Query psy12804
Match_columns 182
No_of_seqs 162 out of 1026
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:09:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11750 gltB glutamate syntha 100.0 6.9E-48 1.5E-52 387.0 8.9 143 30-175 2-241 (1485)
2 KOG0399|consensus 100.0 9.6E-46 2.1E-50 362.5 8.1 146 27-175 63-313 (2142)
3 COG0067 GltB Glutamate synthas 100.0 2.5E-44 5.3E-49 323.3 7.6 138 31-175 1-231 (371)
4 cd00713 GltS Glutamine amidotr 100.0 4.7E-43 1E-47 319.0 6.6 114 60-175 115-230 (413)
5 PF00310 GATase_2: Glutamine a 100.0 2.1E-39 4.5E-44 290.7 5.3 113 60-175 112-224 (361)
6 cd00713 GltS Glutamine amidotr 98.6 2.7E-08 5.8E-13 91.7 2.5 35 147-181 25-59 (413)
7 PRK11750 gltB glutamate syntha 98.2 7.3E-07 1.6E-11 92.2 3.1 35 147-181 39-73 (1485)
8 KOG0399|consensus 98.1 1.5E-06 3.3E-11 88.5 3.1 35 147-181 103-137 (2142)
9 cd01907 GlxB Glutamine amidotr 97.7 2.5E-05 5.3E-10 66.9 3.0 78 89-171 17-102 (249)
10 COG0067 GltB Glutamate synthas 97.2 0.00025 5.4E-09 64.9 3.3 38 144-181 34-71 (371)
11 PRK07847 amidophosphoribosyltr 93.2 0.11 2.3E-06 49.6 4.1 75 89-171 38-113 (510)
12 PRK07349 amidophosphoribosyltr 80.8 1.7 3.8E-05 41.4 3.6 76 89-171 48-123 (500)
13 cd00715 GPATase_N Glutamine am 64.2 6.5 0.00014 33.4 2.8 75 89-171 14-89 (252)
14 PRK07272 amidophosphoribosyltr 63.9 9.8 0.00021 36.2 4.2 75 89-171 25-101 (484)
15 PRK07631 amidophosphoribosyltr 59.5 10 0.00022 36.0 3.5 74 89-170 25-99 (475)
16 TIGR01135 glmS glucosamine--fr 57.1 14 0.0003 35.3 4.0 76 89-171 14-89 (607)
17 TIGR01134 purF amidophosphorib 53.6 13 0.00029 34.6 3.2 75 88-170 14-89 (442)
18 PRK09123 amidophosphoribosyltr 53.4 20 0.00043 34.0 4.4 76 89-171 35-111 (479)
19 PRK06781 amidophosphoribosyltr 47.7 18 0.00039 34.3 3.1 74 89-170 25-99 (471)
20 PRK06388 amidophosphoribosyltr 46.6 20 0.00044 34.0 3.3 73 89-170 33-106 (474)
21 PRK05793 amidophosphoribosyltr 45.4 15 0.00033 34.5 2.3 75 89-171 30-105 (469)
22 TIGR01156 cytb6/f_IV cytochrom 39.8 12 0.00026 30.8 0.6 19 135-153 7-25 (159)
23 PRK08341 amidophosphoribosyltr 39.0 26 0.00055 33.0 2.7 72 89-170 17-88 (442)
24 PRK00331 glucosamine--fructose 38.6 36 0.00079 32.5 3.7 75 90-171 16-90 (604)
25 PRK13476 cytochrome b6-f compl 37.2 14 0.0003 30.5 0.6 19 135-153 7-25 (160)
26 CHL00058 petD cytochrome b6/f 36.6 15 0.00032 30.4 0.6 19 135-153 7-25 (160)
27 PLN02981 glucosamine:fructose- 36.2 45 0.00097 32.8 4.0 80 87-171 19-111 (680)
28 PTZ00295 glucosamine-fructose- 36.1 37 0.0008 32.9 3.3 80 89-171 38-120 (640)
29 cd00714 GFAT Glutamine amidotr 35.4 54 0.0012 27.2 3.8 76 89-171 14-89 (215)
30 PRK09246 amidophosphoribosyltr 34.6 28 0.0006 33.1 2.2 74 89-170 15-89 (501)
31 PF10231 DUF2315: Uncharacteri 32.9 42 0.00091 26.6 2.6 78 72-149 13-101 (126)
32 PF00159 Hormone_3: Pancreatic 29.8 22 0.00047 22.5 0.4 15 125-139 12-26 (36)
33 PRK08525 amidophosphoribosyltr 29.6 58 0.0012 30.5 3.4 75 89-171 15-90 (445)
34 PRK03065 hutP anti-terminator 26.4 29 0.00064 28.4 0.7 17 32-48 130-146 (148)
35 PF04558 tRNA_synt_1c_R1: Glut 25.5 22 0.00048 29.1 -0.1 14 37-50 105-118 (164)
36 PTZ00394 glucosamine-fructose- 25.2 64 0.0014 31.8 3.0 80 87-171 19-122 (670)
37 cd00352 Gn_AT_II Glutamine ami 22.9 37 0.00081 27.0 0.7 58 108-171 36-93 (220)
38 PLN02440 amidophosphoribosyltr 21.0 72 0.0016 30.2 2.3 75 88-170 14-89 (479)
No 1
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=6.9e-48 Score=386.98 Aligned_cols=143 Identities=29% Similarity=0.551 Sum_probs=133.6
Q ss_pred CCCCCCCCCcccCCceeEEEeeCCCCcccc--------------------------------------------------
Q psy12804 30 ASGLYDPANEREACGVGFIVAIDRKRSHKS-------------------------------------------------- 59 (182)
Q Consensus 30 ~~gLY~p~~E~DaCGvGfIa~i~g~~sh~i-------------------------------------------------- 59 (182)
++|||||++|||||||||||+|+|++||+|
T Consensus 2 ~~glydp~~E~DaCGvGfiA~i~G~~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~~~~g~~lp 81 (1485)
T PRK11750 2 HMGLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVAEEAGWRLA 81 (1485)
T ss_pred CCCCCCccccccCCcceEEEEcCCCccHHHHHHHHHHHHhccCcCcccCCCCCCCcceeeccCCHHHHHHHHHHcCCCCC
Confidence 579999999999999999999999999999
Q ss_pred ---------------------------------------------cccChhHHhcCCceEEEEEcCC--CChHHHHHHHH
Q psy12804 60 ---------------------------------------------AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIY 92 (182)
Q Consensus 60 ---------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly 92 (182)
++||+.|++++|.|||+||.++ .+..+|||+||
T Consensus 82 ~~yaVgm~Flp~d~~~~~~~~~~~e~~~~~~gl~vlgwR~VPv~~~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fer~Ly 161 (1485)
T PRK11750 82 KNYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERRLF 161 (1485)
T ss_pred ccceEEEEEcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCccccchhHhhCCCeEEEEEEccCCCCChhhHHHHHH
Confidence 7999999999999999999864 24467999999
Q ss_pred HHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccccccc
Q psy12804 93 VLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAI 172 (182)
Q Consensus 93 ~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~i 172 (182)
++||++|+.+.. ..+|||||||+||||||||++|+||.+||+||+||+|+|+|| ++|+||||||.|+|++|||+|.|
T Consensus 162 ~~R~~~e~~~~~-~~~~Yi~SlS~rtiVYKGml~~~ql~~fY~DL~d~~~~s~~a--l~HsRFSTNT~PsW~~AqPFR~l 238 (1485)
T PRK11750 162 IARRRIEKRLAD-DKDFYVCSLSNLVIIYKGLMMPADLPRFYLDLADLRLESAIC--VFHQRFSTNTLPRWPLAQPFRYL 238 (1485)
T ss_pred HHHHHHHHhhcc-CCCEEEEecCCCcceeEecccHHHHHHhhhhhCCcceeEEEE--EEECcCCCCCCCCCCcCCCceee
Confidence 999999987633 346999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cHH
Q psy12804 173 PHA 175 (182)
Q Consensus 173 ph~ 175 (182)
.||
T Consensus 239 aHN 241 (1485)
T PRK11750 239 AHN 241 (1485)
T ss_pred eec
Confidence 997
No 2
>KOG0399|consensus
Probab=100.00 E-value=9.6e-46 Score=362.47 Aligned_cols=146 Identities=40% Similarity=0.687 Sum_probs=136.1
Q ss_pred CCCCCCCCCCCCcccCCceeEEEeeCCCCcccc-----------------------------------------------
Q psy12804 27 GPAASGLYDPANEREACGVGFIVAIDRKRSHKS----------------------------------------------- 59 (182)
Q Consensus 27 ~~~~~gLY~p~~E~DaCGvGfIa~i~g~~sh~i----------------------------------------------- 59 (182)
.|+.+|||||..||||||||||||++|+.||+|
T Consensus 63 ~p~~~~L~dp~~ErdaCGVGFvanl~g~~shkivtDA~~~L~~MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~k~q~g 142 (2142)
T KOG0399|consen 63 APQKAGLYDPQYERDACGVGFVANLKGETSHKIVTDARIMLGRMTHRGACGCDNDSGDGAGILTGIPHDFYNKEAKEQLG 142 (2142)
T ss_pred CchhccccCccccccCccceeEEecCCccccchHHHHHHHHHhhhccCccCCCCCCCCccceeecCCHHHHHHHHhhccC
Confidence 566789999999999999999999999999999
Q ss_pred ---------------------------------------------------cccChhHHhcCCceEEEEEcCC-------
Q psy12804 60 ---------------------------------------------------AGIGEVARNSEPFMRQVFLTGK------- 81 (182)
Q Consensus 60 ---------------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~------- 81 (182)
++||+.|+++||.|.|+|+.+.
T Consensus 143 ~~lp~~g~yavGm~Flp~~d~~rkeak~vf~~~ae~~gl~VLgWR~Vp~d~silG~~A~~teP~i~Qv~l~p~~~~~~ae 222 (2142)
T KOG0399|consen 143 LDLPDLGHYAVGMFFLPAEDNKRKEAKKVFTDLAEKLGLSVLGWRKVPVDNSILGENALSTEPTILQVFLFPTYDAIYAE 222 (2142)
T ss_pred CCCcccCcceEEEEEcchhHhHHHHHHHHHHHHHHHcCceEEEeeccCCcccccChhhhhcCCchhhhccccchhccccc
Confidence 8999999999999999976421
Q ss_pred CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCC
Q psy12804 82 QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDND 161 (182)
Q Consensus 82 ~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~ 161 (182)
.+.++|||.||++||.+++.+.. ...|||||||++||||||||+|+||..||+||+|++|+|+|| ++|+||||||.|
T Consensus 223 ~~~~~fer~ly~lRk~~~~~i~~-~~e~YvcSLsn~TIVYKGql~~~ql~~yY~DL~N~~y~S~~A--lvHsRFSTNTfP 299 (2142)
T KOG0399|consen 223 FDTDKFERSLYLLRKQASLQIGK-EKEFYVCSLSNQTIVYKGQLRPEQLYNYYPDLTNAEYKSHFA--LVHSRFSTNTFP 299 (2142)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhh-cceEEEEeccCceEEEecccCHHHHhhhcccccchhhcccce--eeeeccccCCCC
Confidence 35689999999999999998764 357999999999999999999999999999999999999988 999999999999
Q ss_pred CCCcccccccccHH
Q psy12804 162 SGDGAGVLVAIPHA 175 (182)
Q Consensus 162 ~gDgagil~~iph~ 175 (182)
+||.|||||.++||
T Consensus 300 sWdrAQPmR~l~HN 313 (2142)
T KOG0399|consen 300 SWDRAQPMRFLAHN 313 (2142)
T ss_pred Cccccccchhhhcc
Confidence 99999999999997
No 3
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=323.27 Aligned_cols=138 Identities=33% Similarity=0.536 Sum_probs=131.5
Q ss_pred CCCCCCCCcccCCceeEEEeeCCCCcccc---------------------------------------------------
Q psy12804 31 SGLYDPANEREACGVGFIVAIDRKRSHKS--------------------------------------------------- 59 (182)
Q Consensus 31 ~gLY~p~~E~DaCGvGfIa~i~g~~sh~i--------------------------------------------------- 59 (182)
+|||+|.+||||||||||++++|++||+|
T Consensus 1 ~gly~~~~e~daCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~~~~~~~p~~ 80 (371)
T COG0067 1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEADKGIKLPEA 80 (371)
T ss_pred CCCCCCccccccCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHHhcccCCCCc
Confidence 58999999999999999999999999999
Q ss_pred ------------------------------------------cccChhHHhcCCceEEEEEcCCCChHHHHHHHHHHHHH
Q psy12804 60 ------------------------------------------AGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKV 97 (182)
Q Consensus 60 ------------------------------------------~~LG~~A~~t~P~I~Qvfv~~~~~~~~fEr~Ly~~Rk~ 97 (182)
+++|+.|.+++|.|+||||. .+.++|||+||++||+
T Consensus 81 ~~y~vg~~fl~~~~~~~~~i~~~~~~~e~~~vlgwR~vp~~~~~~g~~a~~~~p~~~qv~i~--~~~~~~e~~l~i~r~~ 158 (371)
T COG0067 81 GFYAVGMVFLPQERAAAREIPEEEAVAEGLSVLGWRDVPVNSSVLGEVALATMPRIEQVFIG--ASGDDFERVLFIARKR 158 (371)
T ss_pred ccccceEEEeccchhhhhhhhhHHHhhcCCceeeEEecccCchhcchhhhhcCCchheeEee--cCchhhhhhhhhhhhh
Confidence 56899999999999999997 4567999999999999
Q ss_pred HhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804 98 STHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA 175 (182)
Q Consensus 98 iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~ 175 (182)
||+++.. +|||||||++|||||||++|+||.+||+||+||+|+|+++ ++|+||||||.|+|.+|+|++.+.||
T Consensus 159 ~~~~~~~---~~yv~S~s~~t~VYKG~~~p~~V~~~y~dl~~~~~~s~~~--l~HsRFSTNT~p~W~~AHPfr~lvHN 231 (371)
T COG0067 159 IEKRIGA---DFYVCSLSSRTIVYKGVGLPEDVAEFYLDLDDERYKSAIA--LVHTRFSTNTFPSWPLAHPFRLLVHN 231 (371)
T ss_pred hhhcccC---CEEEEecCCCeEEEecccCHHHHHHHHhhccchhhceeEE--EEEeccCCCCCCCCCccCcceeeeec
Confidence 9998764 7999999999999999999999999999999999999977 99999999999999999999999997
No 4
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=4.7e-43 Score=318.98 Aligned_cols=114 Identities=32% Similarity=0.516 Sum_probs=105.7
Q ss_pred cccChhHHhcCCceEEEEEcCC--CChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhh
Q psy12804 60 AGIGEVARNSEPFMRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 137 (182)
Q Consensus 60 ~~LG~~A~~t~P~I~Qvfv~~~--~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DL 137 (182)
++||+.|++++|.|||+||.++ .+..+|||+||++||++|+.+.....+|||||||++|||||||++|+||..||+||
T Consensus 115 ~~lG~~a~~~~P~i~Q~fv~~~~~~~~~~~er~l~~~r~~~e~~~~~~~~~~yv~Sls~~~iVyKGm~~~~~v~~~Y~DL 194 (413)
T cd00713 115 SVLGPTARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDL 194 (413)
T ss_pred hhcchhhhhcCCeEEEEEEecCCccCcchHHHHHHHHHHHHHHHHHhcCCCEEEEecccceEEEeccccHHHHHHhcccc
Confidence 8999999999999999999865 23567999999999999998754334699999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804 138 NIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA 175 (182)
Q Consensus 138 qdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~ 175 (182)
+||+|+|++| +.|+||||||.|+|++|||++.|.||
T Consensus 195 ~~~~~~s~~a--l~H~RfSTNT~p~W~~AqPfr~laHN 230 (413)
T cd00713 195 QDPRFESAFA--LVHSRFSTNTFPSWPLAQPFRYLAHN 230 (413)
T ss_pred CcccceEEEE--EEEEecCCCCCCCcccCCcceeEEEc
Confidence 9999999988 99999999999999999999999997
No 5
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=100.00 E-value=2.1e-39 Score=290.66 Aligned_cols=113 Identities=34% Similarity=0.582 Sum_probs=99.9
Q ss_pred cccChhHHhcCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhcc
Q psy12804 60 AGIGEVARNSEPFMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNI 139 (182)
Q Consensus 60 ~~LG~~A~~t~P~I~Qvfv~~~~~~~~fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqd 139 (182)
++||+.|++++|.|||+||.++....+||++||++||++|+..... ..|||||||++|||||||++|+||..||+||+|
T Consensus 112 ~~lg~~a~~~~P~i~Q~fv~~~~~~~~~e~~l~~~rk~~e~~~~~~-~~~yv~SlS~~tivYKg~~~~~~l~~~y~Dl~~ 190 (361)
T PF00310_consen 112 SVLGPIARKTEPLIWQVFVAPPEGEEEFERRLYLIRKRIEKAIEED-DAFYVCSLSSRTIVYKGMGTPEQLAEFYPDLQD 190 (361)
T ss_dssp GGS-HHHHHC--EEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHCCH-TTBEEEEEESSEEEEEECC-GGGHHHHCCGGGC
T ss_pred hhccHhHHhcCCcEEEEEEECCcchhhHHHHHHHHHHHHHHhhhhc-CCEEEEecCcchhhhhhccCHHHHHHHHHhhcc
Confidence 8999999999999999999887557899999999999999987542 239999999999999999999999999999999
Q ss_pred chHHHHHHHhhhccccccCCCCCCCcccccccccHH
Q psy12804 140 IEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHA 175 (182)
Q Consensus 140 p~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~ 175 (182)
++|+++++ +.|.|++||+.++|.+|||++.|.||
T Consensus 191 ~~~~s~~~--i~H~RysTnt~p~w~~AqPf~~laHN 224 (361)
T PF00310_consen 191 EDFKSHFA--IGHQRYSTNTFPSWENAQPFRALAHN 224 (361)
T ss_dssp TTEEBSEE--EEEEEE-SSSSCSGGGSSSEEEEEEE
T ss_pred ccccceEE--EEEEecCCCCCCcchhcChHHHhhhc
Confidence 99999987 99999999999999999999999998
No 6
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.57 E-value=2.7e-08 Score=91.67 Aligned_cols=35 Identities=49% Similarity=0.978 Sum_probs=32.7
Q ss_pred HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804 147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL 181 (182)
Q Consensus 147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~ 181 (182)
..+|.|||++++++++|||||||++|||+||++++
T Consensus 25 L~~m~HRGa~~ad~~tGDGaGil~~iP~~f~~~~~ 59 (413)
T cd00713 25 LERMEHRGGVGADGKTGDGAGILIQIPHEFFREEL 59 (413)
T ss_pred HhhCcCCCcccCCCCCCCcceEeccCCHHHHHHHH
Confidence 36899999999999999999999999999999875
No 7
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.21 E-value=7.3e-07 Score=92.20 Aligned_cols=35 Identities=40% Similarity=0.740 Sum_probs=32.7
Q ss_pred HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804 147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL 181 (182)
Q Consensus 147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~ 181 (182)
..+|+|||++++++++|||||||++|||+||++++
T Consensus 39 L~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~ 73 (1485)
T PRK11750 39 LARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVA 73 (1485)
T ss_pred HHhccCcCcccCCCCCCCcceeeccCCHHHHHHHH
Confidence 45899999999999999999999999999999875
No 8
>KOG0399|consensus
Probab=98.12 E-value=1.5e-06 Score=88.47 Aligned_cols=35 Identities=66% Similarity=1.216 Sum_probs=32.8
Q ss_pred HHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804 147 SMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL 181 (182)
Q Consensus 147 a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~ 181 (182)
..||.|||+|++++.+|||||+|+.|||+||++.+
T Consensus 103 L~~MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~ 137 (2142)
T KOG0399|consen 103 LGRMTHRGACGCDNDSGDGAGILTGIPHDFYNKEA 137 (2142)
T ss_pred HHhhhccCccCCCCCCCCccceeecCCHHHHHHHH
Confidence 46899999999999999999999999999999875
No 9
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=97.70 E-value=2.5e-05 Score=66.94 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhcC-CC-------CCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCC
Q psy12804 89 RQIYVLRKVSTHKIP-KP-------GQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDN 160 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~-~~-------~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~ 160 (182)
..|+..-.+++++-. +. ..++|+.|+|.+++|||++..+.+|.++|. + +.+.+.++ +.|.|.+|+..
T Consensus 17 ~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~-~--~~~~~~~~--igH~R~aT~g~ 91 (249)
T cd01907 17 ALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYD-L--EEYKGYHW--IAHTRQPTNSA 91 (249)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcC-c--hheEEEEE--EEEEeccCCCC
Confidence 456667777787765 32 135788999999999999999999999885 4 56778766 99999999887
Q ss_pred CCCCccccccc
Q psy12804 161 DSGDGAGVLVA 171 (182)
Q Consensus 161 ~~gDgagil~~ 171 (182)
.++.++||++.
T Consensus 92 ~~~~n~qP~~~ 102 (249)
T cd01907 92 VWWYGAHPFSI 102 (249)
T ss_pred CCccCCCCeec
Confidence 77889999975
No 10
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00025 Score=64.95 Aligned_cols=38 Identities=37% Similarity=0.685 Sum_probs=33.6
Q ss_pred HHHHHhhhccccccCCCCCCCcccccccccHHHHHhhh
Q psy12804 144 EKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKL 181 (182)
Q Consensus 144 Sa~a~~m~HRr~~~~~~~~gDgagil~~iph~~~~~~~ 181 (182)
...-.+|.|||+.++++.+||||||++++|+.||.+.+
T Consensus 34 ~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~ 71 (371)
T COG0067 34 LEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEA 71 (371)
T ss_pred HHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHH
Confidence 44456799999999999999999999999999999864
No 11
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=93.16 E-value=0.11 Score=49.62 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-..++++-.+. .=|++... +..+|||+....++ |.|..-+.+...++ +-|.|.+|...+++.++|
T Consensus 38 ~~~~~gL~~LqHRGqds---aGIa~~d~~~i~~~K~~Glv~~v---f~d~~l~~l~G~i~--IGHvR~sT~G~~~~~naQ 109 (510)
T PRK07847 38 KLTYYGLYALQHRGQEA---AGIAVSDGSQILVFKDLGLVSQV---FDEQTLASLQGHVA--IGHCRYSTTGASTWENAQ 109 (510)
T ss_pred HHHHHHHHHHhhhCcCc---ccEEEEeCCEEEEEecCccHHHh---hchhhhhhcCCcEE--EEeccCCcCCCCcccCCC
Confidence 44677777788765432 23444444 57899999887666 55544456677755 889999999888889999
Q ss_pred cccc
Q psy12804 168 VLVA 171 (182)
Q Consensus 168 il~~ 171 (182)
|+..
T Consensus 110 P~~~ 113 (510)
T PRK07847 110 PTFR 113 (510)
T ss_pred CcCc
Confidence 9974
No 12
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=80.78 E-value=1.7 Score=41.39 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV 168 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi 168 (182)
..+|..-..++|+-.+. .++.+.. ..+..++||+....++ |.+..-..+...++ +-|.|.+|....++.+|||
T Consensus 48 ~~~~~gL~~LqHRGqds-aGIa~~~-~~~~~~~K~~Glv~~v---f~~~~l~~l~G~i~--IGHvRysT~G~~~~~naQP 120 (500)
T PRK07349 48 KLTYFGLYALQHRGQES-AGIATFE-GDKVHLHKDMGLVSQV---FDEDILEELPGDLA--VGHTRYSTTGSSRKANAQP 120 (500)
T ss_pred HHHHHHHHHhcccCcCc-ceEEEEe-CCEEEEEecCcchhhh---cchhhhhcCCCCEE--EEEeecccCCCCCccCCCC
Confidence 34666777778765432 1233322 3457899999875554 44322235566655 8899999988777789999
Q ss_pred ccc
Q psy12804 169 LVA 171 (182)
Q Consensus 169 l~~ 171 (182)
+..
T Consensus 121 ~~~ 123 (500)
T PRK07349 121 AVL 123 (500)
T ss_pred eEe
Confidence 973
No 13
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=64.20 E-value=6.5 Score=33.38 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..|+..-++++++-.+. +=|+..+. ..-++|++..+..+ |.|+..+.+.+.++ +.|.|.+++...+.-++|
T Consensus 14 ~~~~~~l~~l~~RG~D~---~Gi~~~d~~~~~~~k~~g~~~~~---~~~~~~~~~~~~~~--lgH~R~at~g~~~~~n~q 85 (252)
T cd00715 14 RLTYLGLYALQHRGQES---AGIATSDGKRFHTHKGMGLVSDV---FDEEKLRRLPGNIA--IGHVRYSTAGSSSLENAQ 85 (252)
T ss_pred HHHHHHHHHHhccCcce---eEEEEEeCCEEEEEecCCcHHHh---hcccchhhCCCcEE--EEEEEcccCCCCCccCCC
Confidence 44566666667665431 23333333 35578988776655 66665566677755 889999888766678999
Q ss_pred cccc
Q psy12804 168 VLVA 171 (182)
Q Consensus 168 il~~ 171 (182)
|+..
T Consensus 86 Pf~~ 89 (252)
T cd00715 86 PFVV 89 (252)
T ss_pred CcEE
Confidence 9974
No 14
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=63.87 E-value=9.8 Score=36.18 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccC-CcceeeecccChhchhhhhhhhcc-chHHHHHHHhhhccccccCCCCCCCcc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLS-NRIVVYKGQFTADQLWKYFTDLNI-IEDAEKLSMRMNHRGACACDNDSGDGA 166 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLS-srTIVYKGml~~~qL~~yY~DLqd-p~~~Sa~a~~m~HRr~~~~~~~~gDga 166 (182)
..+|..-..++++-.+. .=|++.. .+..++||+..-.++ |.++.+ ..+...++ +-|.|.+|...+++-+|
T Consensus 25 ~~~~~gL~~LqHRGqds---aGIa~~d~~~i~~~K~~Glv~~v---f~~~~~l~~l~G~~~--IGH~RysT~G~~~~~na 96 (484)
T PRK07272 25 QLTYFGLHSLQHRGQEG---AGIVSNDNGKLKGHRDLGLLSEV---FKDPADLDKLTGQAA--IGHVRYATAGSASIENI 96 (484)
T ss_pred HHHHHHHHHhcccCCcc---ceEEEEeCCeeEEEecCCcccch---hcchhhHhcCCCcEE--EEEeeccccCCCCcCCC
Confidence 34777777888865432 2334443 346799999976665 433221 23445544 88999998877777899
Q ss_pred ccccc
Q psy12804 167 GVLVA 171 (182)
Q Consensus 167 gil~~ 171 (182)
||+..
T Consensus 97 qP~~~ 101 (484)
T PRK07272 97 QPFLF 101 (484)
T ss_pred CCEEe
Confidence 99964
No 15
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=59.46 E-value=10 Score=36.02 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-.+++++-.+. .=|++... +..++|++....++.+- .+| ..+...++ +-|.|.+|...++.-++|
T Consensus 25 ~~~~~gL~~LqHRG~ds---aGia~~~~~~~~~~k~~Glv~~vf~~-~~l--~~l~G~~g--IGH~RysT~G~~~~~n~Q 96 (475)
T PRK07631 25 QITYYGLHSLQHRGQEG---AGIVVTDGGKLSAHKGLGLVTEVFQN-GEL--DALKGKAA--IGHVRYATAGGGGYENVQ 96 (475)
T ss_pred HHHHHHHHHhcCCCccc---CeEEEEcCCEEEEEEcccccchhhch-hhh--hccCCCEE--EEEeeccccCCCCcCCcC
Confidence 34666667788765432 22333333 46789999877665332 144 24556655 889999998877788999
Q ss_pred ccc
Q psy12804 168 VLV 170 (182)
Q Consensus 168 il~ 170 (182)
|+.
T Consensus 97 P~~ 99 (475)
T PRK07631 97 PLL 99 (475)
T ss_pred CeE
Confidence 994
No 16
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=57.11 E-value=14 Score=35.34 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV 168 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi 168 (182)
..++..-+.++++-.+. .++++.+ ..+..++||......+.+ .+..+.+.+..+ +.|.|.++....+..++||
T Consensus 14 ~~~~~~l~~l~hRG~ds-~Gi~~~~-~~~~~~~k~~g~~~~~~~---~~~~~~~~~~~~--igH~R~at~g~~~~~n~qP 86 (607)
T TIGR01135 14 PILLEGLKRLEYRGYDS-AGIAVVD-EGKLFVRKAVGKVQELAN---KLGEKPLPGGVG--IGHTRWATHGKPTEENAHP 86 (607)
T ss_pred HHHHHHHHHHhccCccc-ceEEEEe-CCEEEEEECCcCHHHHHh---hhhcccCCccEE--EEEeeccCCCCCCccCCCC
Confidence 34666667778765432 2344433 345678999988776654 333344566655 8899998887666779999
Q ss_pred ccc
Q psy12804 169 LVA 171 (182)
Q Consensus 169 l~~ 171 (182)
++.
T Consensus 87 ~~~ 89 (607)
T TIGR01135 87 HTD 89 (607)
T ss_pred cCc
Confidence 974
No 17
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=53.60 E-value=13 Score=34.61 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeccC-CcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcc
Q psy12804 88 KRQIYVLRKVSTHKIPKPGQRFYICSLS-NRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGA 166 (182)
Q Consensus 88 Er~Ly~~Rk~iE~~~~~~~~~fYi~SLS-srTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDga 166 (182)
.+.+|..-..++|+-.+ ..-|++.. .+..+||++....++ |.|-.-+.+.+.++ +-|.|.+|+...+..++
T Consensus 14 ~~~~~~~L~~lqhRG~d---s~Gia~~d~~~~~~~k~~glv~~v---~~~~~l~~l~g~~~--IgHvR~aT~G~~~~~n~ 85 (442)
T TIGR01134 14 ASLTYYGLYALQHRGQE---AAGIAVSDGNKIRTHKGNGLVSDV---FDERHLERLKGNVG--IGHVRYSTAGSSSLSNA 85 (442)
T ss_pred HHHHHHHHHHHHhhCcc---ceEEEEEeCCEEEEEEcCCchhhh---cchhhhhcccCcEE--EEEEEecCCCCCCccCC
Confidence 35566677777776543 24445444 347789999877665 55543345666655 88999988876667799
Q ss_pred cccc
Q psy12804 167 GVLV 170 (182)
Q Consensus 167 gil~ 170 (182)
||+.
T Consensus 86 QPf~ 89 (442)
T TIGR01134 86 QPFV 89 (442)
T ss_pred CCEE
Confidence 9997
No 18
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=53.39 E-value=20 Score=34.01 Aligned_cols=76 Identities=8% Similarity=-0.046 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccC-CcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLS-NRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLS-srTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-.+++++-.+. .++ ++.. .+..++||+....++..=-.+| ..+...++ +-|.|.+|....+..++|
T Consensus 35 ~~~~~gL~~LqHRG~ds-aGi--a~~~~~~~~~~k~~Glv~~vf~~~~~l--~~l~G~~~--IGH~R~sT~G~~~~~n~Q 107 (479)
T PRK09123 35 ALTALGLHALQHRGQEA-AGI--VSFDGERFHSERRMGLVGDHFTDADVI--ARLPGNRA--IGHVRYSTTGETILRNVQ 107 (479)
T ss_pred HHHHHHHHHhcCcCccC-CEE--EEEECCEEEEEecCcchhhhhhhhhhh--hccCCCEE--EEEEecccCCCCCcCCCC
Confidence 34666666777765432 123 3333 3577899998887774311122 24556655 889999988777778999
Q ss_pred cccc
Q psy12804 168 VLVA 171 (182)
Q Consensus 168 il~~ 171 (182)
|+..
T Consensus 108 P~~~ 111 (479)
T PRK09123 108 PLFA 111 (479)
T ss_pred Ccee
Confidence 9963
No 19
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=47.72 E-value=18 Score=34.26 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCc-ceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNR-IVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsr-TIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-.+++++-.+. .=|+++... ..++|++..-.++.+= .+| ..+...++ +-|.|.+|....+.-+||
T Consensus 25 ~~~~~gL~~LqhRG~ds---aGia~~d~~~~~~~k~~GlV~~vf~~-~~l--~~l~g~~~--IGHvRyaT~G~~~~~naq 96 (471)
T PRK06781 25 QVSYYGLHSLQHRGQEG---AGIVVNNGEKIVGHKGLGLISEVFSR-GEL--EGLNGKSA--IGHVRYATAGGSEVANVQ 96 (471)
T ss_pred HHHHHHHHHhhCcCcCc---ceEEEEeCCEEEEEecCcchhhhcch-hhH--hcCCCCEE--EEEeEcccCCCCCcCCCC
Confidence 34666666777765432 223333333 6689999987766331 134 24566655 889999988776778999
Q ss_pred ccc
Q psy12804 168 VLV 170 (182)
Q Consensus 168 il~ 170 (182)
|+.
T Consensus 97 P~~ 99 (471)
T PRK06781 97 PLL 99 (471)
T ss_pred CeE
Confidence 994
No 20
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=46.57 E-value=20 Score=33.98 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCc-ceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNR-IVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsr-TIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-.+++++-.+. .=|+++... ..++||+..-.++ |.++. ..+...++ +-|.|.+|...++..+||
T Consensus 33 ~~~~~gL~~LqhRGqds---aGIa~~d~~~i~~~K~~Glv~~v---f~~~~-~~l~G~~g--IGH~RyaT~G~~~~~naq 103 (474)
T PRK06388 33 SPIITALRTLQHRGQES---AGMAVFDGRKIHLKKGMGLVTDV---FNPAT-DPIKGIVG--VGHTRYSTAGSKGVENAG 103 (474)
T ss_pred HHHHHHHHHhhCcCcCc---ceEEEEcCCEEEEEecCcchHHH---hhhhh-hcCCCcEE--EeeeeeeecCCCCccCCC
Confidence 45788888888875432 124444444 6789999976654 54543 45666655 889999998877788999
Q ss_pred ccc
Q psy12804 168 VLV 170 (182)
Q Consensus 168 il~ 170 (182)
|+.
T Consensus 104 P~~ 106 (474)
T PRK06388 104 PFV 106 (474)
T ss_pred CeE
Confidence 986
No 21
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=45.36 E-value=15 Score=34.55 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-..++|+-.+ ..=|+.++. +..++|++....++.+- .+| ..+.+.++ +-|.|.+|....+..++|
T Consensus 30 ~~~~~gL~~LqhRG~d---saGIa~~~~~~~~~~k~~G~v~~~f~~-~~l--~~l~g~~~--iGHvR~sT~G~~~~~n~q 101 (469)
T PRK05793 30 SLTYYGLYALQHRGQE---SAGIAVSDGEKIKVHKGMGLVSEVFSK-EKL--KGLKGNSA--IGHVRYSTTGASDLDNAQ 101 (469)
T ss_pred HHHHHHHHHHhhhCCC---cceEEEEeCCEEEEEecccccccccch-hhH--hccCCcEE--EEEeecccCCCCCCCCCC
Confidence 4567777778876543 233444443 36789999988766432 133 24556655 889999988766677999
Q ss_pred cccc
Q psy12804 168 VLVA 171 (182)
Q Consensus 168 il~~ 171 (182)
|+..
T Consensus 102 Pf~~ 105 (469)
T PRK05793 102 PLVA 105 (469)
T ss_pred CeEe
Confidence 9964
No 22
>TIGR01156 cytb6/f_IV cytochrome b6/f complex subunit IV. This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene.
Probab=39.84 E-value=12 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=17.9
Q ss_pred hhhccchHHHHHHHhhhcc
Q psy12804 135 TDLNIIEDAEKLSMRMNHR 153 (182)
Q Consensus 135 ~DLqdp~~~Sa~a~~m~HR 153 (182)
|||+||..++++|+.|-|-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (159)
T TIGR01156 7 PDLSDPVLRAKLAKGMGHN 25 (159)
T ss_pred CCCCCHHHHHHHhccCCCC
Confidence 7999999999999999995
No 23
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=39.05 E-value=26 Score=32.98 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV 168 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi 168 (182)
..||..-..++++-.+ ..=|++...+..++||+....++ |.+.....+...++ +-|.|.+|.. ...++||
T Consensus 17 ~~l~~gL~~LqhRG~d---saGIa~~~~~~~~~K~~Glv~~v---f~~~~~~~l~g~~~--IGH~R~sT~G--~~~~~QP 86 (442)
T PRK08341 17 KKAYYALIALQHRGQE---GAGISVWRHRIRTVKGHGLVSEV---FKGGSLSRLKSNLA--IGHVRYSTSG--SLSEVQP 86 (442)
T ss_pred HHHHHHHHHhhccCcc---cceEEEECCcEEEEecCCchhhh---hcccccccCCCCEE--EEEeeccccC--CCcCcCC
Confidence 4577778888886543 23445555568899999976665 55544456777756 8899999775 3568999
Q ss_pred cc
Q psy12804 169 LV 170 (182)
Q Consensus 169 l~ 170 (182)
+.
T Consensus 87 ~~ 88 (442)
T PRK08341 87 LE 88 (442)
T ss_pred EE
Confidence 75
No 24
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=38.63 E-value=36 Score=32.48 Aligned_cols=75 Identities=9% Similarity=-0.085 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccccc
Q psy12804 90 QIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVL 169 (182)
Q Consensus 90 ~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil 169 (182)
.++..-+.++++-.+. .++++.+ ..+..++||......+.. .+.++.+.+..+ |.|.|.++...++..++||+
T Consensus 16 ~~~~~l~~l~hRG~d~-~Gi~~~~-~~~~~~~k~~g~~~~~~~---~~~~~~~~g~~~--igH~R~at~g~~~~~n~qP~ 88 (604)
T PRK00331 16 ILLEGLKRLEYRGYDS-AGIAVLD-DGGLEVRKAVGKVANLEA---KLEEEPLPGTTG--IGHTRWATHGKPTERNAHPH 88 (604)
T ss_pred HHHHHHHHHhccCcCc-ceEEEEe-CCEEEEEECCcCHHHHHh---hhccccCCCcEE--EEEEecCCCCCCccccCCcc
Confidence 4555666777765432 2344444 255788999988665544 333446677655 89999988876666799999
Q ss_pred cc
Q psy12804 170 VA 171 (182)
Q Consensus 170 ~~ 171 (182)
.+
T Consensus 89 ~~ 90 (604)
T PRK00331 89 TD 90 (604)
T ss_pred cc
Confidence 73
No 25
>PRK13476 cytochrome b6-f complex subunit IV; Provisional
Probab=37.17 E-value=14 Score=30.50 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=17.7
Q ss_pred hhhccchHHHHHHHhhhcc
Q psy12804 135 TDLNIIEDAEKLSMRMNHR 153 (182)
Q Consensus 135 ~DLqdp~~~Sa~a~~m~HR 153 (182)
|||.||..++++|+.|-|-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (160)
T PRK13476 7 PDLSDPKLRAKLAKGMGHN 25 (160)
T ss_pred CCCCCHHHHHHHhccCCCC
Confidence 7999999999999999985
No 26
>CHL00058 petD cytochrome b6/f complex subunit IV
Probab=36.59 E-value=15 Score=30.38 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=17.8
Q ss_pred hhhccchHHHHHHHhhhcc
Q psy12804 135 TDLNIIEDAEKLSMRMNHR 153 (182)
Q Consensus 135 ~DLqdp~~~Sa~a~~m~HR 153 (182)
|||+||.+++++|+.|-|-
T Consensus 7 ~~~~~~~~~~~~~~~~g~~ 25 (160)
T CHL00058 7 PDLNDPVLRAKLAKGMGHN 25 (160)
T ss_pred CCCCCHHHHHHHhccCCCC
Confidence 7999999999999999985
No 27
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=36.23 E-value=45 Score=32.85 Aligned_cols=80 Identities=10% Similarity=0.031 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCceEEeccCC------cceeeecccChhchhh-hh-----hhhc-cchHHHHHHHhhhcc
Q psy12804 87 FKRQIYVLRKVSTHKIPKPGQRFYICSLSN------RIVVYKGQFTADQLWK-YF-----TDLN-IIEDAEKLSMRMNHR 153 (182)
Q Consensus 87 fEr~Ly~~Rk~iE~~~~~~~~~fYi~SLSs------rTIVYKGml~~~qL~~-yY-----~DLq-dp~~~Sa~a~~m~HR 153 (182)
....||..-+++|++-.+. .=|+.... +..++|++.....|.. .| .||. +..+....+ +-|.
T Consensus 19 ~~~~l~~gL~~Lq~RG~ds---aGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~--IGH~ 93 (680)
T PLN02981 19 ILEVLFNGLRRLEYRGYDS---AGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAG--IAHT 93 (680)
T ss_pred HHHHHHHHHHHHhcCCccc---ceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEE--EEEc
Confidence 4567899999999876532 12222222 3789999995555543 22 1332 334566655 8899
Q ss_pred ccccCCCCCCCccccccc
Q psy12804 154 GACACDNDSGDGAGVLVA 171 (182)
Q Consensus 154 r~~~~~~~~gDgagil~~ 171 (182)
|.+|...++..++||+..
T Consensus 94 R~at~g~~~~~n~qP~~~ 111 (680)
T PLN02981 94 RWATHGPPAPRNSHPQSS 111 (680)
T ss_pred ccccCCCCCcCCCCCccc
Confidence 999888777889999975
No 28
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=36.14 E-value=37 Score=32.91 Aligned_cols=80 Identities=8% Similarity=-0.010 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCcceeee--cccChhchhhhh-hhhccchHHHHHHHhhhccccccCCCCCCCc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYK--GQFTADQLWKYF-TDLNIIEDAEKLSMRMNHRGACACDNDSGDG 165 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYK--Gml~~~qL~~yY-~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDg 165 (182)
..||..-++++++-.+. .++.+..=-.+..++| |+....+...-. .+|.+..+.+..+ +-|.|.+|...++..+
T Consensus 38 ~~~~~~l~~L~hRG~ds-~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~--igH~R~at~g~~~~~n 114 (640)
T PTZ00295 38 KILLEGIEILQNRGYDS-CGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIG--IAHTRWATHGGKTDEN 114 (640)
T ss_pred HHHHHHHHHHHhcCCCe-eEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEE--EEEeccccCCCCCcCC
Confidence 34677777888876532 2233332113467788 776554432222 2342324556645 8899999887777789
Q ss_pred cccccc
Q psy12804 166 AGVLVA 171 (182)
Q Consensus 166 agil~~ 171 (182)
+||+..
T Consensus 115 ~qP~~~ 120 (640)
T PTZ00295 115 AHPHCD 120 (640)
T ss_pred CCCCCC
Confidence 999974
No 29
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=35.39 E-value=54 Score=27.16 Aligned_cols=76 Identities=8% Similarity=-0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGV 168 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagi 168 (182)
..++..-..++++-.+. ..+++.. -.+.-++|+......+...+ ....+.+..+ +.|.|.++....+..++||
T Consensus 14 ~~~~~~l~~l~hRG~d~-~Gi~~~~-~~~~~~~k~~g~~~~~~~~~---~~~~~~~~~~--igH~R~at~g~~~~~n~qP 86 (215)
T cd00714 14 DILLEGLKRLEYRGYDS-AGIAVIG-DGSLEVVKAVGKVANLEEKL---AEKPLSGHVG--IGHTRWATHGEPTDVNAHP 86 (215)
T ss_pred HHHHHHHHHHhccCcCc-ceEEEEe-CCEEEEEEcCccHHHHHHHh---hhccCCccEE--EEEEEccCCCCCCccCCCC
Confidence 34566666677765432 2333322 13466899987777665543 3334456655 8899998776545568999
Q ss_pred ccc
Q psy12804 169 LVA 171 (182)
Q Consensus 169 l~~ 171 (182)
+..
T Consensus 87 f~~ 89 (215)
T cd00714 87 HRS 89 (215)
T ss_pred CCc
Confidence 974
No 30
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=34.62 E-value=28 Score=33.12 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccC-CcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLS-NRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLS-srTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-..+.|+-.+ ..-|++.. .+.-++||+..-.++ |.|-.=..+...++ +-|.|.+|....+..++|
T Consensus 15 ~~~~~~L~aLqHRGqd---saGi~~~~~~~~~~~k~~Glv~~v---f~~~~l~~l~g~~~--IGHvRysT~G~~~~~n~Q 86 (501)
T PRK09246 15 QSIYDALTVLQHRGQD---AAGIVTIDGNRFRLRKANGLVRDV---FRTRHMRRLQGNMG--IGHVRYPTAGSSSSAEAQ 86 (501)
T ss_pred HHHHHHHHHHhccCcc---eeEEEEEeCCEEEEEccCCccccc---cCcchHhhCCCCEE--EEEEcCCcCCCCCcccCC
Confidence 4566666677776532 23344433 456788998776655 44321123344544 889999988776778999
Q ss_pred ccc
Q psy12804 168 VLV 170 (182)
Q Consensus 168 il~ 170 (182)
|+.
T Consensus 87 P~~ 89 (501)
T PRK09246 87 PFY 89 (501)
T ss_pred CEE
Confidence 996
No 31
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=32.91 E-value=42 Score=26.55 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcC----C------CCCceEEeccCC-cceeeecccChhchhhhhhhhccc
Q psy12804 72 FMRQVFLTGKQDEEEFKRQIYVLRKVSTHKIP----K------PGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNII 140 (182)
Q Consensus 72 ~I~Qvfv~~~~~~~~fEr~Ly~~Rk~iE~~~~----~------~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp 140 (182)
.|+.|....+.++.++|++|-..|..+..-.. . ....=||.|..- +.--=|..+++++|..||.+.-|.
T Consensus 13 NlRpi~~~~~~nEt~lE~klR~~Rqe~~~wNq~FW~~~N~~F~~~K~~fi~~~~l~~~~g~~~~l~a~~mseFYk~FL~~ 92 (126)
T PF10231_consen 13 NLRPIIFHIPENETPLERKLRLLRQETQEWNQEFWAKHNIRFSKEKEEFIESRQLRKESGRKQELSADEMSEFYKEFLDK 92 (126)
T ss_pred CcceeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 34445554455667899999999998753211 0 001235665421 222235678999999999999999
Q ss_pred hHHHHHHHh
Q psy12804 141 EDAEKLSMR 149 (182)
Q Consensus 141 ~~~Sa~a~~ 149 (182)
....++.-.
T Consensus 93 n~~~h~~YN 101 (126)
T PF10231_consen 93 NRKRHMQYN 101 (126)
T ss_pred HHHHHHHHH
Confidence 999886644
No 32
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=29.80 E-value=22 Score=22.52 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.7
Q ss_pred cChhchhhhhhhhcc
Q psy12804 125 FTADQLWKYFTDLNI 139 (182)
Q Consensus 125 l~~~qL~~yY~DLqd 139 (182)
-++++|.+||.+|++
T Consensus 12 aspeel~~Y~~~L~~ 26 (36)
T PF00159_consen 12 ASPEELAQYYAALRH 26 (36)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 368999999999975
No 33
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=29.57 E-value=58 Score=30.51 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhcCCCCCceEEeccCC-cceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccc
Q psy12804 89 RQIYVLRKVSTHKIPKPGQRFYICSLSN-RIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAG 167 (182)
Q Consensus 89 r~Ly~~Rk~iE~~~~~~~~~fYi~SLSs-rTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgag 167 (182)
..+|..-++++++-.+ ..-|+.++. +..++|++....+|.+=. ++ ..+...++ +-|.|.+|...++..++|
T Consensus 15 ~~~~~~L~~LqhRG~D---saGia~~~~~~~~~~k~~G~v~~~f~~~-~~--~~~~g~~~--iGH~R~at~g~~~~~naq 86 (445)
T PRK08525 15 KLAYYALFAMQHRGQE---ASGISVSNGKKIKTIKGRGLVTQVFNED-NL--KTLKGEIA--IGHNRYSTAGNDSILDAQ 86 (445)
T ss_pred HHHHHHHHHhhCcCcc---cceEEEEeCCEEEEEEcCcchhhccchh-hh--hccCCcEE--EeecccccCCCCCCCCCC
Confidence 4456667778876543 233444443 477899999888773211 23 23444544 889999988777778999
Q ss_pred cccc
Q psy12804 168 VLVA 171 (182)
Q Consensus 168 il~~ 171 (182)
|+.+
T Consensus 87 P~~~ 90 (445)
T PRK08525 87 PVFA 90 (445)
T ss_pred CeEe
Confidence 9975
No 34
>PRK03065 hutP anti-terminator HutP; Provisional
Probab=26.40 E-value=29 Score=28.38 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.0
Q ss_pred CCCCCCCcccCCceeEE
Q psy12804 32 GLYDPANEREACGVGFI 48 (182)
Q Consensus 32 gLY~p~~E~DaCGvGfI 48 (182)
|-+.|..||+.||+|+.
T Consensus 130 ~a~~~~~eHer~GlGvm 146 (148)
T PRK03065 130 GAPVKGSEHEAIGLGIN 146 (148)
T ss_pred cCcccccccceeccccc
Confidence 45677889999999974
No 35
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=25.48 E-value=22 Score=29.10 Aligned_cols=14 Identities=50% Similarity=0.921 Sum_probs=7.5
Q ss_pred CCcccCCceeEEEe
Q psy12804 37 ANEREACGVGFIVA 50 (182)
Q Consensus 37 ~~E~DaCGvGfIa~ 50 (182)
+..-.+||||++..
T Consensus 105 ~~Fe~~cGVGV~VT 118 (164)
T PF04558_consen 105 AEFEKACGVGVVVT 118 (164)
T ss_dssp HHHHHTTTTT----
T ss_pred HHHHHHcCCCeEEC
Confidence 33467999999886
No 36
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=25.20 E-value=64 Score=31.80 Aligned_cols=80 Identities=8% Similarity=-0.055 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCceEEecc----------------CCcceeeecccChhchhh-hhhh--hc-----cchH
Q psy12804 87 FKRQIYVLRKVSTHKIPKPGQRFYICSL----------------SNRIVVYKGQFTADQLWK-YFTD--LN-----IIED 142 (182)
Q Consensus 87 fEr~Ly~~Rk~iE~~~~~~~~~fYi~SL----------------SsrTIVYKGml~~~qL~~-yY~D--Lq-----dp~~ 142 (182)
....||..-+++|++-.+. .=|+.. ..+..++|+...-..|.+ .|.+ |. |..+
T Consensus 19 ~~~~~~~gL~~Le~RG~ds---aGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~~~~~~~~~~~~~~~ 95 (670)
T PTZ00394 19 ILNVLLDGIQKVEYRGYDS---AGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFSEAVAATLPPMDATT 95 (670)
T ss_pred HHHHHHHHHHHHhccCccc---ceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhcchhhhhccccccCC
Confidence 3456888888999876532 223331 135789999998888777 4443 11 1134
Q ss_pred HHHHHHhhhccccccCCCCCCCccccccc
Q psy12804 143 AEKLSMRMNHRGACACDNDSGDGAGVLVA 171 (182)
Q Consensus 143 ~Sa~a~~m~HRr~~~~~~~~gDgagil~~ 171 (182)
....+ +-|.|.+|...++..+|||+.+
T Consensus 96 ~g~~~--igH~R~at~g~~~~~n~qP~~~ 122 (670)
T PTZ00394 96 SHHVG--IAHTRWATHGGVCERNCHPQQS 122 (670)
T ss_pred CCCEE--EEEeeceecCCCCcCCCCCcCC
Confidence 55544 8899999888788889999975
No 37
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=22.88 E-value=37 Score=27.00 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=39.1
Q ss_pred ceEEeccCCcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCccccccc
Q psy12804 108 RFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVA 171 (182)
Q Consensus 108 ~fYi~SLSsrTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDgagil~~ 171 (182)
++.+.. ......||..... ..++.+...+.+.+..+ +.|.|..|...++..+++|+..
T Consensus 36 Gi~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--i~H~R~at~g~~~~~n~hPf~~ 93 (220)
T cd00352 36 GIAVYD-GDGLFVEKRAGPV---SDVALDLLDEPLKSGVA--LGHVRLATNGLPSEANAQPFRS 93 (220)
T ss_pred CeEEEC-CCceEEEEeccch---hhhhhhhhhhccCCCEE--EEEeEeeecCCCCCCCCCCcCc
Confidence 344444 2344566665544 44555666677778755 8999998887777889999873
No 38
>PLN02440 amidophosphoribosyltransferase
Probab=20.95 E-value=72 Score=30.20 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCceEEeccC-CcceeeecccChhchhhhhhhhccchHHHHHHHhhhccccccCCCCCCCcc
Q psy12804 88 KRQIYVLRKVSTHKIPKPGQRFYICSLS-NRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGA 166 (182)
Q Consensus 88 Er~Ly~~Rk~iE~~~~~~~~~fYi~SLS-srTIVYKGml~~~qL~~yY~DLqdp~~~Sa~a~~m~HRr~~~~~~~~gDga 166 (182)
...+|..-..+.|+-.+. .=|++.. ....++|++....++ |.|-.-..+...++ +-|.|.+|....+.-++
T Consensus 14 ~~~~~~~L~~LqHRGqds---~Gi~~~d~~~~~~~k~~Glv~~v---f~~~~l~~l~g~~~--IGHvRysT~G~~~~~n~ 85 (479)
T PLN02440 14 SRLCYLGLHALQHRGQEG---AGIVTVDGNRLQSITGNGLVSDV---FDESKLDQLPGDIA--IGHVRYSTAGASSLKNV 85 (479)
T ss_pred HHHHHHHHHHHHhhCccc---ceEEEEcCCEEEEEecCCchhhh---cchhhhhccCCcEE--EEEEeccccCCCCccCC
Confidence 356777777777765432 2222222 335678988876655 33211123445544 88999998876677899
Q ss_pred cccc
Q psy12804 167 GVLV 170 (182)
Q Consensus 167 gil~ 170 (182)
||+.
T Consensus 86 QPf~ 89 (479)
T PLN02440 86 QPFV 89 (479)
T ss_pred CCce
Confidence 9996
Done!