RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12804
         (182 letters)



>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E   +    + HRGA   D  +GDGAG+ VA+P  F+   ++
Sbjct: 17  VVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60



 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 46  GFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTG--KQDEEEFKRQIYVLRKVSTHKIP 103
           G+ +   R+       IGE A  + P + Q+ +       +E+F+  +Y++R+     + 
Sbjct: 101 GYYIYGWRQVPINVDIIGEKANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVK 160

Query: 104 KPG-QRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHR 153
                 FYICSLS R ++YKG F A+QL  ++    + E  E     + H+
Sbjct: 161 GEQINDFYICSLSARSIIYKGMFLAEQLTTFY-PDLLDERFES-DFAIYHQ 209



 Score = 34.6 bits (79), Expect = 0.005
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 43 CGVGFIVAIDRKRSHK 58
          CGVGFI AID K    
Sbjct: 1  CGVGFIAAIDGKPRRS 16


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 22/44 (50%), Positives = 26/44 (59%)

Query: 139 IIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPHAFYIQKLR 182
           ++E A K    M HRG C+ DNDSGDGAGV+ AIP     Q   
Sbjct: 17  LVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60



 Score = 60.8 bits (147), Expect = 6e-12
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 28  PAASGLYDPANEREACGVGFIVAIDRKRSHKSAGIGEVARNSEPFMRQVFLTG--KQDEE 85
           P+A  +     E         V   R+    S  +G  A+N++P + Q+ +T       +
Sbjct: 83  PSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPHIEQILVTCPEGCAGD 142

Query: 86  EFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL 137
           E  R++Y+ R +   K+    + FY+CS S R +VYKG   +  L +++ DL
Sbjct: 143 ELDRRLYIARSIIGKKL---AEDFYVCSFSCRTIVYKGMVRSIILGEFYLDL 191



 Score = 34.2 bits (78), Expect = 0.007
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 43 CGVGFIVAIDRKRSHK 58
          CGVGFI  +  K  H 
Sbjct: 1  CGVGFIANLRGKPDHT 16


>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus
           sphaericus [TaxId: 1421]}
          Length = 134

 Score = 30.6 bits (69), Expect = 0.049
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 103 PKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLNIIEDAEKLSMRMNHRGACACDNDS 162
              G +  I      +    G     ++W Y  +   IEDA +L+  M ++ A A   + 
Sbjct: 21  EASGLKAVIAIHDTTLGPALGGA---RMWTYNAEEEAIEDALRLARGMTYKNAAA-GLNL 76

Query: 163 GDGAGVLVAIPHA 175
           G G  V++  P A
Sbjct: 77  GGGKTVIIGDPFA 89


>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
           sp., M4 [TaxId: 1831]}
          Length = 148

 Score = 26.8 bits (59), Expect = 0.95
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 131 WKYFTDLNIIEDAEKLSMRMNHRGACACDNDSGDGAGVLVAIPH 174
            +Y    + + DA KL+  M  + A +     G G  V+     
Sbjct: 44  AQYSNLADALTDAGKLAGAMTLKMAVSN-LPMGGGKSVIALPAP 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 665,528
Number of extensions: 29830
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 9
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)