BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12805
(1429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/853 (43%), Positives = 497/853 (58%), Gaps = 47/853 (5%)
Query: 190 EVHHMCVLLGYGADAICPYLVFEMAKSLRAEG------------NYCDAMERGISKVMAK 237
+ H+ VL+G GA + YL E G NY A++ G+ K+M+K
Sbjct: 651 DTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSK 710
Query: 238 MGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSERT 297
MGIS + SY+G FEA+GL+ ++ + F SR+ GI + ++ ++H +Y+E
Sbjct: 711 MGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGIGLNGIQKKVLEQHATAYNE-- 768
Query: 298 ADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLR 357
+++ L G+Y +R G++H + I LQ+A +N++ + ++ E + LR
Sbjct: 769 -EVVALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSE-QVNKRPPMQLR 826
Query: 358 GQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGE 417
L+ + PV + EVE I KRF T MS G++S EAH TL AMN+IGAKS++GE
Sbjct: 827 DLLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGE 886
Query: 418 GGENPERYLSSGD-ENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPG 476
GGE+P R+ + +N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG+LPG
Sbjct: 887 GGEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPG 946
Query: 477 YKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIXXXXXXXXXX 536
+KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 947 FKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGI 1006
Query: 537 XXXXXXXXXXXXEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVV 596
+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR RV
Sbjct: 1007 GTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVR 1066
Query: 597 LQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK 656
L+ DG ++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +LR+
Sbjct: 1067 LRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQ 1126
Query: 657 KFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAF 716
KF G PE V+N LAEEVR +A LG R +++GRTDLL G A+ L+
Sbjct: 1127 KFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLLHQVSRG----AEHLDDLD 1182
Query: 717 LLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRA 776
L + PG N R + +++ LD ++ + P+ + ++ L Y N RA
Sbjct: 1183 LNPRLAQVDPGENARYCTLQGRNEVPDTLDARIVADARPLFE-EGEKMQLAYNARNTQRA 1241
Query: 777 FTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESF 836
LS ++ K GL I ++L G+AGQS AF V+G+ + + GDAN
Sbjct: 1242 IGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQGIKLEVMGDAN-------- 1293
Query: 837 CAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKA 896
DYVGKGLSGG I++ P +S E++KN I+GN LYGAT+GK
Sbjct: 1294 -----------------DYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKL 1336
Query: 897 FFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLD 956
F G A ERF+VRNSGA VVEG G +GCEYMTGG AVILG G NFAAGM+GG+AYV D
Sbjct: 1337 FAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYD 1396
Query: 957 VDGSFAKKCNMEMVXXXXXXXXXXXXYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVK 1016
+D S N E V +K L+ E +T+S A +L W +F +
Sbjct: 1397 LDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKFWQ 1456
Query: 1017 VTKDIASTRHSVP 1029
V R VP
Sbjct: 1457 VVPKEMLNRLEVP 1469
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 21/157 (13%)
Query: 33 KCVAHNGEINTVRGNVNFMKAREGVMKSP----HIPDIKQLYPVVEPNLSDSGAADCAV- 87
+ +AHNGEINTV+GNVN+MKA E M+ P H+ D+K PV+ LSDSG+ D
Sbjct: 226 RMLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLK---PVIGVGLSDSGSLDTVFE 282
Query: 88 -------------MTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIG 134
M +VP+A + T PD + + MEPWDGPA L TDGR++
Sbjct: 283 VMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVV 342
Query: 135 AILDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANV 171
+DRNGLRP R+ + D +++ SE G+ D V
Sbjct: 343 GGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQV 379
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARI 1064
KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 948 KVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKV 996
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/853 (43%), Positives = 497/853 (58%), Gaps = 47/853 (5%)
Query: 190 EVHHMCVLLGYGADAICPYLVFEMAKSLRAEG------------NYCDAMERGISKVMAK 237
+ H+ VL+G GA + YL E G NY A++ G+ K+M+K
Sbjct: 651 DTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSK 710
Query: 238 MGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSERT 297
MGIS + SY+G FEA+GL+ ++ + F SR+ GI + ++ ++H +Y+E
Sbjct: 711 MGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGIGLNGIQKKVLEQHATAYNE-- 768
Query: 298 ADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLR 357
+++ L G+Y +R G++H + I LQ+A +N++ + ++ E + LR
Sbjct: 769 -EVVALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSE-QVNKRPPMQLR 826
Query: 358 GQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGE 417
L+ + PV + EVE I KRF T MS G++S EAH TL AMN+IGAKS++GE
Sbjct: 827 DLLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGE 886
Query: 418 GGENPERYLSSGD-ENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPG 476
GGE+P R+ + +N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG+LPG
Sbjct: 887 GGEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPG 946
Query: 477 YKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIXXXXXXXXXX 536
+KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 947 FKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGI 1006
Query: 537 XXXXXXXXXXXXEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVV 596
+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR RV
Sbjct: 1007 GTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVR 1066
Query: 597 LQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK 656
L+ DG ++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +LR+
Sbjct: 1067 LRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQ 1126
Query: 657 KFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAF 716
KF G PE V+N LAEEVR +A LG R +++GRTDLL G A+ L+
Sbjct: 1127 KFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLLHQVSRG----AEHLDDLD 1182
Query: 717 LLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRA 776
L + PG N R + +++ LD ++ + P+ + ++ L Y N RA
Sbjct: 1183 LNPRLAQVDPGENARYCTLQGRNEVPDTLDARIVADARPLFE-EGEKMQLAYNARNTQRA 1241
Query: 777 FTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESF 836
LS ++ K GL I ++L G+AGQS AF V+G+ + + GDAN
Sbjct: 1242 IGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQGIKLEVMGDAN-------- 1293
Query: 837 CAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKA 896
DYVGKGLSGG I++ P +S E++KN I+GN LYGAT+GK
Sbjct: 1294 -----------------DYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKL 1336
Query: 897 FFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLD 956
F G A ERF+VRNSGA VVEG G +GCEYMTGG AVILG G NFAAGM+GG+AYV D
Sbjct: 1337 FAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYD 1396
Query: 957 VDGSFAKKCNMEMVXXXXXXXXXXXXYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVK 1016
+D S N E V +K L+ E +T+S A +L W +F +
Sbjct: 1397 LDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKFWQ 1456
Query: 1017 VTKDIASTRHSVP 1029
V R VP
Sbjct: 1457 VVPKEMLNRLEVP 1469
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 21/157 (13%)
Query: 33 KCVAHNGEINTVRGNVNFMKAREGVMKSP----HIPDIKQLYPVVEPNLSDSGAADCAV- 87
+ +AHNGEINTV+GNVN+MKA E M+ P H+ D+K PV+ LSDSG+ D
Sbjct: 226 RMLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLK---PVIGVGLSDSGSLDTVFE 282
Query: 88 -------------MTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIG 134
M +VP+A + T PD + + MEPWDGPA L TDGR++
Sbjct: 283 VMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVV 342
Query: 135 AILDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANV 171
+DRNGLRP R+ + D +++ SE G+ D V
Sbjct: 343 GGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQV 379
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARI 1064
KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 948 KVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKV 996
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/878 (42%), Positives = 481/878 (54%), Gaps = 106/878 (12%)
Query: 192 HHMCVLLGYGADAICPYLVFEMAKSL---------------------RAEGNYCDAMERG 230
HH L+GYGA AICPYL E + A NY ++E G
Sbjct: 651 HHFACLVGYGASAICPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAG 710
Query: 231 ISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHF 290
+ K+++KMGIS L SY GAQIFEA+GL E++ F GT SR+GG+T +A E H
Sbjct: 711 LFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTTSRVGGLTIADVAGEVMVFHG 770
Query: 291 LSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAAS-------NNNKNAYDRF 343
+++ E L N G+ ++R GGE H+N P +L +A + NN AYD +
Sbjct: 771 MAFPEMAKK---LENFGFVNYRPGGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGEAYDHY 827
Query: 344 R--ESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTT 401
++ + LR LDF + + EVE IVKRF TG MS G++S EAH T
Sbjct: 828 ELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREAHET 887
Query: 402 LAKAMNKIGAKSNTGEGGENPERYLSSGD-------------------ENQRSAIKQVAS 442
LA AMN++GAKSN+GEGGE+ RYL+ D + SAIKQ+AS
Sbjct: 888 LAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIAS 947
Query: 443 GRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHH 502
GRFGVT YL L+IKMAQGAKPGEGG+LPG KV++ IA R S PGV LISPPPHH
Sbjct: 948 GRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHH 1007
Query: 503 DIYSIEDLAELIYDLKCANPNARIXXXXXXXXXXXXXXXXXXXXXXEHIVISGHDGGTGA 562
DIYSIEDLA+LIYDL NP A++ + I ISGHDGGTGA
Sbjct: 1008 DIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGA 1067
Query: 563 SSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 622
S + IK+AG PWELGV E H+VL N LR RV+L+ADG ++TG+DVV+AAL+GA+E G
Sbjct: 1068 SPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGF 1127
Query: 623 STAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAK 682
+ +I GC M R CH N CPVG+ATQ LR++F G P V+N+ + +AEEVR+ +A
Sbjct: 1128 GSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAH 1187
Query: 683 LGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLE 742
LG R D++GRTDLLK R K + L LL + Q
Sbjct: 1188 LGYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLDCLL---------------NLPDTKQNR 1232
Query: 743 KRLDNTLIQECEPVLSGKV-PRIDLEYTINNEC------------RAFTATLSYHISIKT 789
+ L++ + PVL + D++ IN++ R LS I+ K
Sbjct: 1233 QWLNHEPVHSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKY 1292
Query: 790 KEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLE 849
G E +I L G+AGQSF AF + G+ + L+G+AN
Sbjct: 1293 GNNGF-EGNITLNFQGAAGQSFGAFNLDGMTLHLQGEAN--------------------- 1330
Query: 850 GDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVR 909
DYVGKG++GGEI+I P ++F + NVI+GN CLYGAT G + G A ERF+VR
Sbjct: 1331 ----DYVGKGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVR 1386
Query: 910 NSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEM 969
NS AV+EG GDH CEYMTGG V+LG GRN AGM+GG+AY LD G +K N E+
Sbjct: 1387 NSVGKAVIEGAGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEI 1446
Query: 970 VXXXXXXXXXXXXYVKSLLVEFHEKTESEIAKNLLQTW 1007
+ +KSL+ E T S K +L W
Sbjct: 1447 ITLQRITASKGEEQLKSLITAHVEHTGSPKGKAILANW 1484
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 18/151 (11%)
Query: 33 KCVAHNGEINTVRGNVNFMKAREGVMKSPHI--PDIKQLYPVVEPNLSDSGAADCAV--- 87
+ + HNGEINT+ GN+N+M ARE ++ +++ L P+V SDS D A+
Sbjct: 222 RLLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELL 281
Query: 88 -----------MTMVPEAWQNDGTMPD--EKRDFYNWAACAMEPWDGPALLTFTDGRYIG 134
M +VPEA++N + D E DF+++ + EPWDGPALL F+DG+ +G
Sbjct: 282 VRTGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVG 341
Query: 135 AILDRNGLRPSRFYVLKDNVMVMASEVGVYD 165
A LDRNGLRP+R+ + KD+ +V+ SE GV D
Sbjct: 342 AGLDRNGLRPARYCITKDDYIVLGSEAGVVD 372
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARI 1064
KV++ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++
Sbjct: 983 KVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQV 1031
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 456
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 1299 GIKTVKVEW-TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRS 1357
G++ V++ DATGR + SE + DLV+ A+GF PE + N D +
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGF-EPED-LPNAFDEPELKVT 393
Query: 1358 NYSTV---EKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSF 1403
+ T+ +T +T + V+AAGD RG SLVVWAI +GR AA I ++
Sbjct: 394 RWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAY 442
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1229 KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALN 1288
+D+ EIYA + QA RC +CGVPFCQ CP+ N IP W L EA
Sbjct: 1 QDFAEIYARFSDERANE-QANRCSQCGVPFCQVH--CPVSNNIPDWLKLTSEGRLEEAYE 57
Query: 1289 QLLQTNNFP 1297
TNNFP
Sbjct: 58 VSQATNNFP 66
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
Wild-Type Nox
Length = 490
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 1283 WSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPE 1342
+ L L+ N GI+ E K+ G K++++ + + D+V+LA+GF P
Sbjct: 234 YDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFR-PN 292
Query: 1343 RYIAN-ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+ N ++DL R+ V K T++P VYA GDC
Sbjct: 293 TTLGNGKIDLF---RNGAFLVNKRQETSIPGVYAIGDC 327
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase:
C44s Nox With Azide
Length = 490
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 1283 WSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPE 1342
+ L L+ N GI+ E K+ G K++++ + + D+V+LA+GF P
Sbjct: 234 YDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFR-PN 292
Query: 1343 RYIAN-ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+ N ++DL R+ V K T++P VYA GDC
Sbjct: 293 TTLGNGKIDLF---RNGAFLVNKRQETSIPGVYAIGDC 327
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1309 KDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLT 1368
K TG D EK+ + D V + +G + P+ + + LD R Y V+ T
Sbjct: 221 KKVTGVKYKDRTTGEEKLIETDGVFIYVGLI-PQTSFLKDSGVKLDER-GYIVVDSRQRT 278
Query: 1369 TVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREIDS 1402
+VP VYAAGD G + + A+ +G +AA + S
Sbjct: 279 SVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS 313
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By 2-Ketopropyl
Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By 2-Ketopropyl
Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 1298 AGIKTVKVEWTKDATGRWK--MDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDP 1355
+G ++E +DA GR + + PN E + D V L +G +A L L L P
Sbjct: 274 SGSNVTRIE--EDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331
Query: 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ V + T+VP VYA GD G + A G AAR +
Sbjct: 332 KGEV-LVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNV 375
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 1284 SEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMD-EVPNSEK--IFKCDLVLLAMGFLG 1340
S+ ++LQ F + T TK + G+ + E + K + CD++L+ +G
Sbjct: 244 SKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 303
Query: 1341 PERYIA-NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEG 1393
+ + EL + LDPR V + T +P +YA GD G L A EG
Sbjct: 304 FTKNLGLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEG 356
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 1284 SEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMD-EVPNSEK--IFKCDLVLLAMGFLG 1340
S+ ++LQ F + T TK + G+ + E + K + CD++L+ +G
Sbjct: 223 SKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 282
Query: 1341 PERYIA-NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEG 1393
+ + EL + LDPR V + T +P +YA GD G L A EG
Sbjct: 283 FTKNLGLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEG 335
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And
Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain)
Subcomplex Of Human Pyruvate Dehydrogenase Complex
Length = 474
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 1284 SEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMD-EVPNSEK--IFKCDLVLLAMGFLG 1340
S+ ++LQ F + T TK + G+ + E + K + CD++L+ +G
Sbjct: 223 SKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 282
Query: 1341 PERYIA-NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEG 1393
+ + EL + LDPR V + T +P +YA GD G L A EG
Sbjct: 283 FTKNLGLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEG 335
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIAN--ELDLTLDPRSNYS 1360
++V W A+G+ E D VL A+G + PE N + ++ +P++
Sbjct: 285 LQVTWEDHASGK---------EDTGTFDTVLWAIGRV-PETRTLNLEKAGISTNPKNQKI 334
Query: 1361 TVEKTYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREI---DSFLMGTSTLPDVGGV 1416
V+ T+VP +YA GD G+ L AI G+ A+ + S LM S +P V
Sbjct: 335 IVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTT--V 392
Query: 1417 ITPYQ 1421
TP +
Sbjct: 393 FTPLE 397
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 383 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 436
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIAN--ELDLTLDPRSNYS 1360
++V W A+G+ E D VL A+G + PE N + ++ +P++
Sbjct: 259 LQVTWEDHASGK---------EDTGTFDTVLWAIGRV-PETRTLNLEKAGISTNPKNQKI 308
Query: 1361 TVEKTYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREI---DSFLMGTSTLPDVGGV 1416
V+ T+VP +YA GD G+ L AI G+ A+ + S LM S +P V
Sbjct: 309 IVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTT--V 366
Query: 1417 ITPYQ 1421
TP +
Sbjct: 367 FTPLE 371
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 289 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 342
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 632
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 287 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 340
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1299 GIKTVKVEWTK---DATGRWKMDEVPNSEKI--FKCDLVLLAMGFLGPERYIANELDLTL 1353
G + V V++ + D TG+W DE ++I K D+V+ A G + + + L
Sbjct: 400 GGRIVAVQFVRTEQDETGKWNEDE----DQIVHLKADVVISAFGSVLRDPKVKEALSPIK 455
Query: 1354 DPRSNYSTVE-KTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
R + V+ +T T+ P V+A GD + V ++++G+QA+ I ++
Sbjct: 456 FNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 507
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 1225 EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWS 1284
EK ++D+I T +G +A RC++C CQ S CP I + I + N+
Sbjct: 53 EKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKS--CPTHLDIKSFITSISNKNYY 110
Query: 1285 EALNQLLQTNNFPAGIKTVKVEWTKD 1310
A + N P G+ V T D
Sbjct: 111 GAAKMIFSDN--PLGLTCGMVCPTSD 134
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1299 GIKTVKVEWTK---DATGRWKMDEVPNSEKI--FKCDLVLLAMGFLGPERYIANELDLTL 1353
G + V V++ + D TG+W DE ++I K D+V+ A G + + + L
Sbjct: 400 GGRIVAVQFVRTEQDETGKWNEDE----DQIVHLKADVVISAFGSVLRDPKVKEALSPIK 455
Query: 1354 DPRSNYSTVE-KTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
R + V+ +T T+ P V+A GD + V ++++G+QA+ I ++
Sbjct: 456 FNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 507
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 1225 EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWS 1284
EK ++D+I T +G +A RC++C CQ S CP I + I + N+
Sbjct: 53 EKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKS--CPTHLDIKSFITSISNKNYY 110
Query: 1285 EALNQLLQTNNFPAGIKTVKVEWTKD 1310
A + N P G+ V T D
Sbjct: 111 GAAKMIFSDN--PLGLTCGMVCPTSD 134
>pdb|1XD7|A Chain A, Crsytal Structure Of A Putative Dna Binding Protein
Length = 145
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 988 LVEFHEKTESEIAKNLLQTWPAPAKQFVKVTK--DIASTRHSVPGVGLISPP 1037
L+ EKT SEI + + T P ++ + + K DI ++R VPG L P
Sbjct: 17 LISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDP 68
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1345 IANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+A + +TLD R + V+ T+VP VYA GD RG L A EG A I
Sbjct: 286 LAADSGVTLDER-GFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERI 340
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 1283 WSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPE 1342
WS L + N + +V + TKD SE+ + D V + ++G +
Sbjct: 200 WSHTLKSI---NEKDGKVGSVTLTSTKDG-----------SEETHEADGVFI---YIGXK 242
Query: 1343 RYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCR-RGQSLVVWAISEGRQAAREID 1401
A DL + Y + T+VP ++AAGD R +G +V A +G AA+
Sbjct: 243 PLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA 302
Query: 1402 SFL 1404
++
Sbjct: 303 EYI 305
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 1294 NNFPAGIKTVKVEWTKDATGRWKMDEVPNSEK-IFKCDLVLLAMGFLGPERYIANELDLT 1352
+N KTV VE +D G + E N+ K + D VL+A G + I+ E
Sbjct: 241 DNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV 298
Query: 1353 LDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397
+ V+K T VP +YA GD L A+ EG AA
Sbjct: 299 AVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAA 343
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 1294 NNFPAGIKTVKVEWTKDATGRWKMDEVPNSEK-IFKCDLVLLAMGFLGPERYIANELDLT 1352
+N KTV VE +D G + E N+ K + D VL+A G + I+ E
Sbjct: 241 DNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV 298
Query: 1353 LDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397
+ V+K T VP +YA GD L A+ EG AA
Sbjct: 299 AVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAA 343
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 336 NKNAYDRFRES-NMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSF 391
N+N YD + ++ + Y+ L GQ+ F +HD+ + + A EI+K+ G SF
Sbjct: 182 NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS---AVEIMKKIKKGDFSF 235
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQA 1396
R NY TV++ T +YAAGDC L A +GR A
Sbjct: 295 RGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIA 335
>pdb|1N7K|A Chain A, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
pdb|1N7K|B Chain B, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
Length = 234
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 597 LQADGQIRTGFDVVVAALLGADEIGLSTA 625
++A G IR+G D V+A GAD IG S+A
Sbjct: 195 VKASGGIRSGIDAVLAVGAGADIIGTSSA 223
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From
Pseudomonas Fluorescens At 2.8 Angstroms Resolution.
Analysis Of Redox And Thermostability Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase From
Pseudomonas Fluorescens At 2.8 Angstroms Resolution.
Analysis Of Redox And Thermostability Properties
Length = 477
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1345 IANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+A + +TLD R + V+ T+VP V+A GD RG L A EG A I
Sbjct: 286 LAADSGVTLDER-GFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERI 340
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 892 TSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMS-GG 950
++GK R I + + +V +SG V V V + G E + GG V+ G N AG++ GG
Sbjct: 99 STGKVIKRNIRSGQ-TVVHSGDVIVFGNV-NKGAEILAGGSVVVFGKAQGNIRAGLNEGG 156
Query: 951 IAYVLDVD 958
A V +D
Sbjct: 157 QAVVAALD 164
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1332 VLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR---GQSLVVW 1388
V + +GF P + A + D + Y V++ T+VP V+AAGDC G V+
Sbjct: 243 VFIEIGFDPPTDF-AKSNGIETDT-NGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVIT 300
Query: 1389 AISEGRQAA 1397
A+++G AA
Sbjct: 301 AVAQGAVAA 309
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1332 VLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR---GQSLVVW 1388
V + +GF P + A + D + Y V++ T+VP V+AAGDC G V+
Sbjct: 243 VFIEIGFDPPTDF-AKSNGIETDT-NGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVIT 300
Query: 1389 AISEGRQAA 1397
A+++G AA
Sbjct: 301 AVAQGAVAA 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,639,578
Number of Sequences: 62578
Number of extensions: 1791860
Number of successful extensions: 4629
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4556
Number of HSP's gapped (non-prelim): 57
length of query: 1429
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1318
effective length of database: 8,027,179
effective search space: 10579821922
effective search space used: 10579821922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)