Query psy12805
Match_columns 1429
No_of_seqs 999 out of 5071
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:12:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0399|consensus 100.0 0E+00 0E+00 2937.3 65.1 1247 10-1420 283-2135(2142)
2 PRK11750 gltB glutamate syntha 100.0 1E-260 3E-265 2443.7 78.1 974 9-1020 210-1467(1485)
3 COG0069 GltB Glutamate synthas 100.0 1E-122 3E-127 1085.8 38.5 470 222-700 9-482 (485)
4 PF01645 Glu_synthase: Conserv 100.0 8.1E-88 1.8E-92 780.2 28.9 364 318-686 1-368 (368)
5 COG0070 GltB Glutamate synthas 100.0 9.8E-66 2.1E-70 577.0 19.3 278 710-1022 2-280 (301)
6 cd02808 GltS_FMN Glutamate syn 100.0 5.2E-64 1.1E-68 594.1 32.2 359 335-699 17-391 (392)
7 cd00982 gltB_C gltb_C. This do 100.0 1.8E-63 4E-68 547.3 21.4 250 745-1020 1-251 (251)
8 KOG0399|consensus 100.0 4.6E-55 9.9E-60 527.2 8.9 409 539-1092 683-1129(2142)
9 cd00713 GltS Glutamine amidotr 100.0 3.4E-53 7.4E-58 496.7 12.1 168 7-174 197-381 (413)
10 PRK11750 gltB glutamate syntha 100.0 1.5E-51 3.2E-56 528.1 20.2 398 539-1092 602-1027(1485)
11 COG0067 GltB Glutamate synthas 100.0 4E-53 8.6E-58 486.7 4.2 155 9-163 200-371 (371)
12 PF00310 GATase_2: Glutamine a 100.0 5.9E-46 1.3E-50 433.8 9.2 155 7-161 191-361 (361)
13 COG0069 GltB Glutamate synthas 100.0 1.6E-39 3.4E-44 383.7 10.6 302 662-1092 4-334 (485)
14 cd00981 arch_gltB Archaeal-typ 100.0 3.1E-34 6.8E-39 315.1 18.1 184 787-1020 36-231 (232)
15 PF01493 GXGXG: GXGXG motif; 100.0 3.8E-32 8.2E-37 295.0 12.3 195 767-986 2-201 (202)
16 PRK05437 isopentenyl pyrophosp 100.0 4.6E-29 1E-33 292.6 20.6 279 368-701 42-340 (352)
17 cd00504 GXGXG GXGXG domain. Th 100.0 5.4E-29 1.2E-33 258.3 11.3 148 775-956 1-149 (149)
18 cd02811 IDI-2_FMN Isopentenyl- 99.9 5.7E-27 1.2E-31 272.8 22.0 263 368-691 34-324 (326)
19 TIGR02151 IPP_isom_2 isopenten 99.9 2.8E-26 6E-31 267.7 21.8 276 367-697 34-329 (333)
20 PF04898 Glu_syn_central: Glut 99.9 2.9E-28 6.2E-33 274.6 2.4 71 189-259 205-287 (287)
21 TIGR03122 one_C_dehyd_C formyl 99.9 3.3E-25 7.2E-30 247.2 11.2 173 781-968 45-220 (260)
22 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.1E-23 2.5E-28 253.6 20.0 237 1154-1402 79-334 (454)
23 PF01645 Glu_synthase: Conserv 99.9 5.3E-26 1.1E-30 265.2 -4.2 220 745-1092 3-234 (368)
24 cd00980 FwdC/FmdC FwdC/FmdC. T 99.9 1.3E-23 2.9E-28 227.1 10.9 155 799-965 19-176 (203)
25 COG1304 idi Isopentenyl diphos 99.9 8.4E-22 1.8E-26 230.4 13.7 278 372-702 50-353 (360)
26 PF01070 FMN_dh: FMN-dependent 99.8 6.2E-21 1.4E-25 224.2 13.6 270 369-691 41-350 (356)
27 cd02922 FCB2_FMN Flavocytochro 99.8 6.4E-20 1.4E-24 214.6 19.0 258 379-691 62-341 (344)
28 KOG0405|consensus 99.8 2.3E-20 5E-25 210.2 13.7 211 1188-1403 128-350 (478)
29 cd02809 alpha_hydroxyacid_oxid 99.8 1.7E-19 3.6E-24 208.2 20.6 236 371-691 49-297 (299)
30 cd04737 LOX_like_FMN L-Lactate 99.8 4.3E-19 9.2E-24 207.8 19.3 259 380-696 71-350 (351)
31 TIGR01423 trypano_reduc trypan 99.8 1E-18 2.3E-23 213.9 20.3 182 1210-1401 153-349 (486)
32 KOG1335|consensus 99.8 6.8E-19 1.5E-23 200.7 12.8 183 1211-1401 176-375 (506)
33 TIGR01421 gluta_reduc_1 glutat 99.8 3.3E-18 7.1E-23 207.7 19.1 182 1211-1401 132-326 (450)
34 TIGR02053 MerA mercuric reduct 99.8 4E-18 8.6E-23 207.4 19.6 184 1210-1402 130-328 (463)
35 cd00980 FwdC/FmdC FwdC/FmdC. T 99.8 3.9E-19 8.4E-24 192.6 9.0 127 817-961 17-153 (203)
36 TIGR01438 TGR thioredoxin and 99.8 6E-18 1.3E-22 207.2 20.3 184 1210-1402 145-343 (484)
37 PLN02979 glycolate oxidase 99.8 2.2E-18 4.8E-23 200.3 15.3 279 356-691 40-348 (366)
38 TIGR03122 one_C_dehyd_C formyl 99.8 6.3E-19 1.4E-23 197.2 10.3 132 789-941 73-212 (260)
39 PLN02493 probable peroxisomal 99.8 1.2E-17 2.6E-22 195.8 21.0 138 506-691 212-349 (367)
40 PRK07846 mycothione reductase; 99.8 1.2E-17 2.6E-22 203.0 20.1 180 1210-1401 130-323 (451)
41 TIGR03452 mycothione_red mycot 99.8 1.1E-17 2.4E-22 203.2 19.9 181 1210-1402 133-327 (452)
42 PRK06370 mercuric reductase; V 99.8 1.3E-17 2.7E-22 203.1 20.4 185 1210-1402 135-333 (463)
43 PLN02507 glutathione reductase 99.8 8.4E-18 1.8E-22 206.7 18.2 181 1210-1401 169-361 (499)
44 PLN02546 glutathione reductase 99.8 1.6E-17 3.4E-22 206.2 19.7 182 1210-1401 218-411 (558)
45 PRK07818 dihydrolipoamide dehy 99.8 1.3E-17 2.9E-22 203.1 18.5 183 1210-1401 137-334 (466)
46 PRK06467 dihydrolipoamide dehy 99.8 1.3E-17 2.7E-22 203.8 18.0 183 1210-1401 138-335 (471)
47 TIGR02708 L_lactate_ox L-lacta 99.7 8.6E-17 1.9E-21 188.8 23.0 145 505-698 215-359 (367)
48 TIGR01424 gluta_reduc_2 glutat 99.7 2.3E-17 4.9E-22 200.1 18.8 182 1209-1401 131-324 (446)
49 PRK14727 putative mercuric red 99.7 2.8E-17 6E-22 201.2 19.6 180 1210-1401 152-344 (479)
50 COG2218 FwdC Formylmethanofura 99.7 3.8E-18 8.3E-23 184.8 10.2 145 788-965 77-222 (264)
51 cd03332 LMO_FMN L-Lactate 2-mo 99.7 3E-17 6.5E-22 193.8 18.7 138 506-691 241-378 (383)
52 PRK11197 lldD L-lactate dehydr 99.7 6.4E-17 1.4E-21 190.7 21.3 134 514-691 237-370 (381)
53 PRK07845 flavoprotein disulfid 99.7 2.2E-17 4.7E-22 201.4 17.7 181 1210-1401 141-335 (466)
54 PRK06116 glutathione reductase 99.7 2.4E-17 5.3E-22 199.8 18.0 182 1210-1401 133-326 (450)
55 PRK05249 soluble pyridine nucl 99.7 2.5E-17 5.5E-22 200.0 17.8 181 1210-1401 139-333 (461)
56 PRK06115 dihydrolipoamide dehy 99.7 2.8E-17 6E-22 200.5 18.1 182 1211-1402 139-337 (466)
57 PTZ00153 lipoamide dehydrogena 99.7 5.3E-17 1.1E-21 204.3 19.7 184 1210-1402 276-494 (659)
58 PRK08010 pyridine nucleotide-d 99.7 1.1E-16 2.3E-21 193.8 20.2 180 1210-1401 121-315 (441)
59 PRK06912 acoL dihydrolipoamide 99.7 7E-17 1.5E-21 196.5 18.2 181 1210-1401 134-328 (458)
60 PTZ00058 glutathione reductase 99.7 6.2E-17 1.3E-21 201.0 18.0 181 1210-1401 204-430 (561)
61 PRK13748 putative mercuric red 99.7 6.2E-17 1.4E-21 201.4 17.8 181 1209-1401 233-426 (561)
62 PRK06292 dihydrolipoamide dehy 99.7 7.6E-17 1.7E-21 195.8 18.1 185 1210-1403 132-331 (460)
63 PRK06416 dihydrolipoamide dehy 99.7 9.1E-17 2E-21 195.4 18.0 183 1210-1402 136-333 (462)
64 PRK14694 putative mercuric red 99.7 2.4E-16 5.2E-21 192.3 20.1 179 1210-1401 142-333 (468)
65 PRK06327 dihydrolipoamide dehy 99.7 1.5E-16 3.3E-21 194.4 17.9 183 1210-1401 147-345 (475)
66 PTZ00052 thioredoxin reductase 99.7 3.1E-16 6.6E-21 193.0 20.6 179 1211-1401 147-339 (499)
67 PRK05458 guanosine 5'-monophos 99.7 3.7E-16 8E-21 181.2 19.1 266 367-702 18-318 (326)
68 TIGR01350 lipoamide_DH dihydro 99.7 2.6E-16 5.6E-21 191.2 18.3 184 1210-1402 133-331 (461)
69 PLN02535 glycolate oxidase 99.7 7.9E-16 1.7E-20 180.8 20.9 139 506-692 211-349 (364)
70 PRK12831 putative oxidoreducta 99.7 3.3E-16 7.2E-21 191.1 16.6 194 1210-1407 230-463 (464)
71 COG2218 FwdC Formylmethanofura 99.7 6.3E-17 1.4E-21 175.5 9.0 114 811-962 79-200 (264)
72 TIGR01316 gltA glutamate synth 99.7 3.8E-16 8.3E-21 189.8 16.7 188 1210-1404 220-449 (449)
73 cd04736 MDH_FMN Mandelate dehy 99.7 1.8E-15 3.8E-20 177.5 19.8 133 513-691 227-359 (361)
74 PRK07251 pyridine nucleotide-d 99.7 1.3E-15 2.8E-20 184.2 18.4 180 1210-1401 120-314 (438)
75 PRK05976 dihydrolipoamide dehy 99.7 1.4E-15 3.1E-20 185.7 18.6 183 1210-1401 144-341 (472)
76 PRK14989 nitrite reductase sub 99.7 1.1E-15 2.5E-20 197.4 17.7 188 1209-1401 102-308 (847)
77 KOG0538|consensus 99.7 2.8E-15 6E-20 167.1 18.1 256 378-696 65-352 (363)
78 PRK13512 coenzyme A disulfide 99.7 7.1E-16 1.5E-20 186.8 14.8 177 1209-1401 106-310 (438)
79 TIGR01306 GMP_reduct_2 guanosi 99.6 5.3E-15 1.1E-19 171.0 19.7 266 368-702 16-315 (321)
80 PRK09754 phenylpropionate diox 99.6 3.4E-15 7.3E-20 178.5 16.1 183 1210-1402 102-308 (396)
81 PRK12810 gltD glutamate syntha 99.6 6E-15 1.3E-19 180.4 17.8 169 1240-1411 280-471 (471)
82 PTZ00318 NADH dehydrogenase-li 99.6 5E-15 1.1E-19 178.7 16.9 155 1242-1413 174-357 (424)
83 PRK09564 coenzyme A disulfide 99.6 5.6E-15 1.2E-19 178.6 17.2 181 1209-1401 104-315 (444)
84 TIGR01317 GOGAT_sm_gam glutama 99.6 9.6E-15 2.1E-19 179.3 17.8 172 1240-1411 282-485 (485)
85 COG1252 Ndh NADH dehydrogenase 99.6 1.8E-14 3.8E-19 171.2 16.8 215 1195-1424 84-351 (405)
86 TIGR03385 CoA_CoA_reduc CoA-di 99.6 1.3E-14 2.8E-19 174.8 15.2 184 1209-1401 92-302 (427)
87 PRK11749 dihydropyrimidine deh 99.6 3.7E-14 8.1E-19 172.7 17.4 193 1210-1408 227-455 (457)
88 PRK12778 putative bifunctional 99.6 2.8E-14 6.1E-19 183.7 16.9 192 1209-1407 518-752 (752)
89 PRK12779 putative bifunctional 99.6 2.7E-14 5.8E-19 186.5 16.8 194 1209-1407 393-629 (944)
90 KOG4716|consensus 99.6 7.4E-15 1.6E-19 165.5 9.5 183 1211-1401 164-363 (503)
91 PRK04965 NADH:flavorubredoxin 99.6 4.2E-14 9.1E-19 167.9 16.4 184 1210-1402 101-301 (377)
92 PRK12814 putative NADPH-depend 99.6 5.8E-14 1.2E-18 178.0 18.4 198 1210-1411 280-507 (652)
93 PRK12775 putative trifunctiona 99.5 7.1E-14 1.5E-18 183.9 19.3 197 1209-1411 518-761 (1006)
94 cd01907 GlxB Glutamine amidotr 99.5 2.3E-14 4.9E-19 161.8 11.9 130 11-165 77-228 (249)
95 PRK10262 thioredoxin reductase 99.5 2E-14 4.4E-19 166.8 11.8 192 1210-1408 107-318 (321)
96 PRK12770 putative glutamate sy 99.5 1.1E-13 2.4E-18 163.1 17.8 189 1209-1406 119-351 (352)
97 TIGR02374 nitri_red_nirB nitri 99.5 6.2E-14 1.3E-18 181.0 16.8 188 1205-1401 91-299 (785)
98 PRK12769 putative oxidoreducta 99.5 4.6E-14 9.9E-19 179.1 14.0 163 1241-1406 468-653 (654)
99 TIGR01292 TRX_reduct thioredox 99.5 4.6E-14 1E-18 160.1 12.6 183 1210-1404 102-300 (300)
100 TIGR03169 Nterm_to_SelD pyridi 99.5 2.5E-13 5.3E-18 160.2 17.9 191 1209-1413 96-319 (364)
101 TIGR03140 AhpF alkyl hydropero 99.5 5.9E-14 1.3E-18 173.5 12.1 186 1210-1406 313-514 (515)
102 KOG1336|consensus 99.5 1.1E-13 2.4E-18 163.8 13.4 204 1195-1404 154-384 (478)
103 cd00981 arch_gltB Archaeal-typ 99.5 5E-14 1.1E-18 156.1 8.2 120 801-957 28-154 (232)
104 PRK09853 putative selenate red 99.5 5.8E-13 1.3E-17 172.4 18.1 192 1209-1406 624-843 (1019)
105 cd00504 GXGXG GXGXG domain. Th 99.5 4.6E-14 1E-18 147.3 6.3 108 799-937 41-149 (149)
106 PRK13984 putative oxidoreducta 99.5 3.9E-13 8.4E-18 169.3 15.8 193 1209-1407 369-604 (604)
107 cd00381 IMPDH IMPDH: The catal 99.5 1.4E-12 3E-17 152.6 19.2 169 508-696 120-321 (325)
108 TIGR03315 Se_ygfK putative sel 99.4 1.2E-12 2.6E-17 170.2 18.1 194 1209-1407 622-842 (1012)
109 PRK15317 alkyl hydroperoxide r 99.4 4.6E-13 9.9E-18 165.7 13.4 188 1210-1408 312-515 (517)
110 TIGR01318 gltD_gamma_fam gluta 99.4 1.4E-12 3E-17 159.6 17.1 161 1241-1405 282-466 (467)
111 PRK12809 putative oxidoreducta 99.4 7.7E-13 1.7E-17 167.6 14.6 165 1240-1407 450-637 (639)
112 TIGR03143 AhpF_homolog putativ 99.4 7.2E-13 1.6E-17 165.4 13.9 188 1211-1409 105-313 (555)
113 PF04898 Glu_syn_central: Glut 99.4 4.9E-13 1.1E-17 152.0 10.4 168 491-691 94-274 (287)
114 COG1251 NirB NAD(P)H-nitrite r 99.4 8.5E-13 1.9E-17 162.2 11.9 204 1194-1406 85-309 (793)
115 PRK06843 inosine 5-monophospha 99.4 5.6E-12 1.2E-16 150.0 17.7 173 508-701 179-388 (404)
116 cd02808 GltS_FMN Glutamate syn 99.4 1.4E-13 3E-18 164.7 3.8 91 999-1092 153-245 (392)
117 PRK08649 inosine 5-monophospha 99.4 6.3E-12 1.4E-16 148.8 17.3 175 506-698 175-366 (368)
118 COG0492 TrxB Thioredoxin reduc 99.4 2.6E-12 5.5E-17 149.1 12.3 183 1211-1407 106-303 (305)
119 PF01493 GXGXG: GXGXG motif; 99.4 3.8E-13 8.2E-18 147.1 4.8 123 797-943 52-175 (202)
120 PRK12771 putative glutamate sy 99.3 1.6E-11 3.5E-16 153.6 17.6 162 1240-1410 266-449 (564)
121 TIGR01304 IMP_DH_rel_2 IMP deh 99.3 4E-11 8.7E-16 141.8 16.3 168 506-697 176-367 (369)
122 PTZ00314 inosine-5'-monophosph 99.3 3.2E-11 6.9E-16 148.2 14.4 174 511-693 270-466 (495)
123 PRK07565 dihydroorotate dehydr 99.2 8.3E-11 1.8E-15 138.4 15.9 150 509-695 152-305 (334)
124 PRK05096 guanosine 5'-monophos 99.2 7.2E-11 1.6E-15 136.0 14.3 174 508-701 136-337 (346)
125 TIGR01305 GMP_reduct_1 guanosi 99.2 9.6E-11 2.1E-15 135.1 15.3 174 508-701 135-336 (343)
126 PLN02826 dihydroorotate dehydr 99.2 2.6E-10 5.7E-15 136.8 17.8 178 479-694 203-406 (409)
127 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 2E-10 4.3E-15 140.3 15.7 175 508-702 251-464 (475)
128 TIGR01302 IMP_dehydrog inosine 99.2 1.7E-10 3.6E-15 140.8 14.7 164 508-691 250-448 (450)
129 cd04739 DHOD_like Dihydroorota 99.2 2.8E-10 6E-15 133.5 15.9 146 508-694 149-302 (325)
130 PRK05567 inosine 5'-monophosph 99.2 1.6E-10 3.5E-15 142.2 14.3 174 508-701 254-462 (486)
131 COG0167 PyrD Dihydroorotate de 99.2 3.1E-10 6.7E-15 131.0 15.4 156 502-695 140-307 (310)
132 cd00982 gltB_C gltb_C. This do 99.2 4.6E-11 9.9E-16 133.5 8.0 110 798-940 74-190 (251)
133 PLN02495 oxidoreductase, actin 99.1 6E-10 1.3E-14 132.6 16.3 155 505-695 165-336 (385)
134 COG0493 GltD NADPH-dependent g 99.1 4.2E-11 9.1E-16 145.6 6.6 91 1317-1407 362-454 (457)
135 PRK07107 inosine 5-monophospha 99.1 4.1E-10 8.8E-15 138.5 15.0 189 491-701 253-479 (502)
136 PF00478 IMPDH: IMP dehydrogen 99.1 3.9E-10 8.5E-15 132.2 12.6 173 508-700 134-341 (352)
137 TIGR01037 pyrD_sub1_fam dihydr 99.1 9.4E-10 2E-14 127.5 15.3 150 505-695 140-299 (300)
138 cd04740 DHOD_1B_like Dihydroor 99.1 1.8E-09 4E-14 124.8 16.2 150 505-695 137-296 (296)
139 KOG0404|consensus 99.1 3E-10 6.6E-15 123.1 8.2 160 1240-1406 156-320 (322)
140 PRK02506 dihydroorotate dehydr 99.1 3.1E-09 6.8E-14 124.0 17.0 151 506-695 141-307 (310)
141 PRK07259 dihydroorotate dehydr 99.0 4.7E-09 1E-13 121.8 16.8 150 505-695 140-299 (301)
142 PLN02274 inosine-5'-monophosph 99.0 1.8E-09 3.9E-14 133.1 13.8 165 510-694 276-473 (505)
143 COG3634 AhpF Alkyl hydroperoxi 99.0 3.1E-10 6.7E-15 129.2 6.2 158 1240-1406 353-516 (520)
144 PLN02852 ferredoxin-NADP+ redu 98.9 8.2E-09 1.8E-13 127.0 15.6 86 1321-1407 335-424 (491)
145 TIGR01372 soxA sarcosine oxida 98.9 7.7E-09 1.7E-13 137.3 16.3 183 1210-1406 276-473 (985)
146 PRK08318 dihydropyrimidine deh 98.9 2.2E-08 4.8E-13 121.5 15.5 154 505-695 151-319 (420)
147 COG0446 HcaD Uncharacterized N 98.9 1.6E-08 3.5E-13 119.6 14.0 186 1209-1403 95-310 (415)
148 PRK07807 inosine 5-monophospha 98.9 2.5E-08 5.5E-13 122.3 15.5 182 508-702 253-466 (479)
149 cd00352 Gn_AT_II Glutamine ami 98.8 1.2E-08 2.7E-13 111.7 10.2 126 12-165 69-204 (220)
150 PRK05286 dihydroorotate dehydr 98.8 5.8E-08 1.2E-12 115.0 16.0 146 502-684 186-344 (344)
151 KOG2495|consensus 98.8 4.4E-08 9.6E-13 115.2 13.1 188 1209-1409 159-401 (491)
152 KOG1346|consensus 98.8 1.1E-08 2.4E-13 118.7 7.3 198 1199-1404 288-520 (659)
153 COG1148 HdrA Heterodisulfide r 98.7 1.3E-08 2.8E-13 120.7 6.6 212 1188-1407 299-547 (622)
154 TIGR03151 enACPred_II putative 98.6 1.4E-07 3.1E-12 110.0 11.3 191 379-632 9-199 (307)
155 COG0070 GltB Glutamate synthas 98.6 5.4E-08 1.2E-12 111.6 7.4 111 825-954 109-230 (301)
156 PF03060 NMO: Nitronate monoox 98.6 8.6E-08 1.9E-12 113.0 9.1 206 379-633 9-229 (330)
157 cd00715 GPATase_N Glutamine am 98.6 1.1E-07 2.5E-12 107.8 9.5 126 12-165 65-200 (252)
158 cd02940 DHPD_FMN Dihydropyrimi 98.6 2.7E-07 5.9E-12 107.3 11.2 121 505-628 151-286 (299)
159 cd04741 DHOD_1A_like Dihydroor 98.5 8.6E-07 1.9E-11 103.0 14.7 120 506-628 141-277 (294)
160 COG2070 Dioxygenases related t 98.5 1.1E-06 2.4E-11 103.7 13.3 104 513-633 119-223 (336)
161 TIGR01036 pyrD_sub2 dihydrooro 98.4 1.3E-06 2.7E-11 103.4 12.8 123 502-628 183-322 (335)
162 cd04738 DHOD_2_like Dihydrooro 98.4 1.7E-06 3.8E-11 101.9 13.1 124 503-628 178-314 (327)
163 cd04743 NPD_PKS 2-Nitropropane 98.4 1.3E-06 2.8E-11 101.9 11.4 198 381-633 2-212 (320)
164 PF01180 DHO_dh: Dihydroorotat 98.3 1.5E-06 3.2E-11 101.0 9.7 122 504-628 143-278 (295)
165 cd02810 DHOD_DHPD_FMN Dihydroo 98.3 4.2E-06 9.1E-11 96.6 12.9 121 505-628 145-277 (289)
166 PF07992 Pyr_redox_2: Pyridine 98.3 8E-07 1.7E-11 95.5 5.9 136 1243-1382 1-199 (201)
167 cd04742 NPD_FabD 2-Nitropropan 98.3 4.1E-06 8.8E-11 100.9 11.7 85 539-632 168-257 (418)
168 PLN02440 amidophosphoribosyltr 98.3 1.9E-06 4.1E-11 106.3 8.8 125 12-165 66-200 (479)
169 PRK07847 amidophosphoribosyltr 98.2 2.2E-06 4.9E-11 105.9 8.6 130 13-166 90-230 (510)
170 PRK05329 anaerobic glycerol-3- 98.2 1E-05 2.2E-10 98.5 14.0 154 1244-1404 218-420 (422)
171 TIGR00736 nifR3_rel_arch TIM-b 98.2 1E-05 2.2E-10 90.9 11.2 104 505-627 118-224 (231)
172 PF13522 GATase_6: Glutamine a 98.2 7.9E-06 1.7E-10 84.3 9.5 112 11-160 12-133 (133)
173 KOG2550|consensus 98.1 6E-06 1.3E-10 96.6 8.7 166 511-696 280-478 (503)
174 TIGR01134 purF amidophosphorib 98.1 6.7E-06 1.5E-10 100.6 8.7 126 12-165 66-200 (442)
175 TIGR02814 pfaD_fam PfaD family 98.0 4.8E-05 1E-09 92.4 14.2 84 540-632 174-262 (444)
176 KOG1436|consensus 98.0 7E-05 1.5E-09 85.5 14.1 174 482-695 198-397 (398)
177 PRK07349 amidophosphoribosyltr 98.0 1.2E-05 2.5E-10 99.5 8.4 125 13-165 100-238 (500)
178 PRK07631 amidophosphoribosyltr 98.0 1.5E-05 3.3E-10 98.0 9.2 124 12-165 76-209 (475)
179 PRK09123 amidophosphoribosyltr 98.0 1.8E-05 3.8E-10 97.7 9.6 123 13-165 88-220 (479)
180 PRK06388 amidophosphoribosyltr 97.9 1.7E-05 3.8E-10 97.5 8.5 125 12-165 83-217 (474)
181 PRK08525 amidophosphoribosyltr 97.9 2.1E-05 4.4E-10 96.5 8.3 125 12-165 66-200 (445)
182 PRK09246 amidophosphoribosyltr 97.8 1.9E-05 4.2E-10 98.0 6.3 134 12-165 66-213 (501)
183 PRK06781 amidophosphoribosyltr 97.8 5.8E-05 1.3E-09 93.0 9.8 123 13-165 77-209 (471)
184 PRK08341 amidophosphoribosyltr 97.7 6.2E-05 1.3E-09 92.1 7.5 125 12-165 67-199 (442)
185 PRK10550 tRNA-dihydrouridine s 97.7 0.00022 4.7E-09 83.9 11.6 108 505-628 114-229 (312)
186 cd02911 arch_FMN Archeal FMN-b 97.7 0.0002 4.3E-09 81.0 10.7 98 505-625 123-222 (233)
187 TIGR00737 nifR3_yhdG putative 97.6 0.00024 5.3E-09 83.6 11.2 107 506-628 115-227 (319)
188 PRK05793 amidophosphoribosyltr 97.6 9.4E-05 2E-09 91.3 7.8 123 13-165 82-214 (469)
189 PRK07272 amidophosphoribosyltr 97.6 0.00022 4.7E-09 88.2 9.6 123 13-165 78-211 (484)
190 PRK10415 tRNA-dihydrouridine s 97.6 0.00038 8.3E-09 82.2 11.3 107 505-627 116-228 (321)
191 cd00714 GFAT Glutamine amidotr 97.5 0.00031 6.8E-09 78.3 9.4 124 11-165 64-198 (215)
192 cd02801 DUS_like_FMN Dihydrour 97.5 0.00045 9.7E-09 77.0 9.7 107 506-628 107-218 (231)
193 PRK06567 putative bifunctional 97.4 0.0011 2.3E-08 87.2 14.0 66 1323-1411 711-776 (1028)
194 cd02803 OYE_like_FMN_family Ol 97.4 0.001 2.2E-08 78.3 12.8 109 510-628 194-316 (327)
195 PF13537 GATase_7: Glutamine a 97.4 0.00039 8.4E-09 71.0 7.1 110 17-163 1-122 (125)
196 cd00712 AsnB Glutamine amidotr 97.4 0.00035 7.5E-09 77.9 7.3 116 12-165 41-164 (220)
197 cd04722 TIM_phosphate_binding 97.4 0.00084 1.8E-08 71.3 9.9 102 507-624 98-200 (200)
198 KOG2755|consensus 97.2 0.0014 3E-08 74.1 9.8 58 1322-1381 264-321 (334)
199 TIGR00742 yjbN tRNA dihydrouri 97.2 0.0018 3.8E-08 76.6 11.1 113 505-628 106-228 (318)
200 PRK00507 deoxyribose-phosphate 97.1 0.0044 9.5E-08 69.7 12.5 103 507-628 105-213 (221)
201 PRK11815 tRNA-dihydrouridine s 97.0 0.0035 7.6E-08 74.6 11.3 113 505-628 116-238 (333)
202 PF00070 Pyr_redox: Pyridine n 97.0 0.0016 3.5E-08 61.1 6.2 60 1243-1307 1-68 (80)
203 PRK01130 N-acetylmannosamine-6 96.9 0.0028 6E-08 70.8 8.7 101 508-626 105-205 (221)
204 PF01207 Dus: Dihydrouridine s 96.9 0.0023 4.9E-08 75.4 8.3 108 505-628 105-218 (309)
205 TIGR01317 GOGAT_sm_gam glutama 96.9 0.00016 3.4E-09 89.9 -2.0 91 1207-1298 1-91 (485)
206 COG0042 tRNA-dihydrouridine sy 96.8 0.0047 1E-07 73.2 10.1 109 504-627 117-232 (323)
207 cd02931 ER_like_FMN Enoate red 96.8 0.009 1.9E-07 72.4 12.5 110 510-628 204-340 (382)
208 cd04729 NanE N-acetylmannosami 96.7 0.006 1.3E-07 68.1 9.6 101 509-627 110-210 (219)
209 cd04734 OYE_like_3_FMN Old yel 96.7 0.01 2.2E-07 70.9 11.7 112 510-628 194-320 (343)
210 TIGR01135 glmS glucosamine--fr 96.6 0.0085 1.8E-07 76.7 10.6 122 11-163 64-196 (607)
211 cd02933 OYE_like_FMN Old yello 96.5 0.014 3.1E-07 69.5 11.6 118 494-628 181-319 (338)
212 PRK13523 NADPH dehydrogenase N 96.5 0.019 4.2E-07 68.5 12.2 122 494-628 171-310 (337)
213 cd04735 OYE_like_4_FMN Old yel 96.5 0.019 4.1E-07 68.9 12.0 108 510-628 197-318 (353)
214 cd01908 YafJ Glutamine amidotr 96.4 0.0081 1.8E-07 68.8 8.2 130 13-162 82-237 (257)
215 cd03766 Gn_AT_II_novel Gn_AT_I 96.4 0.0056 1.2E-07 66.7 6.2 47 116-162 116-165 (181)
216 cd02932 OYE_YqiM_FMN Old yello 96.4 0.022 4.8E-07 67.7 11.8 108 509-628 206-325 (336)
217 PF04481 DUF561: Protein of un 96.4 0.041 9E-07 61.0 12.6 110 505-625 100-216 (242)
218 KOG2335|consensus 96.3 0.028 6.1E-07 66.4 11.9 137 505-660 124-268 (358)
219 cd04730 NPD_like 2-Nitropropan 96.3 0.022 4.7E-07 63.9 10.5 100 513-631 94-193 (236)
220 PRK00208 thiG thiazole synthas 96.3 0.046 1E-06 62.1 12.8 103 506-626 105-207 (250)
221 PRK00331 glucosamine--fructose 96.3 0.012 2.6E-07 75.3 9.2 123 11-164 65-198 (604)
222 COG0274 DeoC Deoxyribose-phosp 96.2 0.017 3.6E-07 64.6 9.0 103 506-626 107-215 (228)
223 KOG3851|consensus 96.2 0.011 2.3E-07 68.7 7.7 129 1277-1409 231-365 (446)
224 cd04728 ThiG Thiazole synthase 96.2 0.051 1.1E-06 61.7 12.8 75 536-626 133-207 (248)
225 cd04733 OYE_like_2_FMN Old yel 96.2 0.035 7.7E-07 66.2 12.4 125 494-628 178-327 (338)
226 COG1902 NemA NADH:flavin oxido 96.0 0.058 1.2E-06 65.0 12.9 125 494-628 178-323 (363)
227 PRK12779 putative bifunctional 95.9 0.001 2.2E-08 88.6 -2.5 80 1219-1298 147-247 (944)
228 PTZ00295 glucosamine-fructose- 95.9 0.017 3.8E-07 74.4 8.5 121 13-164 97-228 (640)
229 COG3486 IucD Lysine/ornithine 95.9 0.26 5.7E-06 59.5 17.3 107 1299-1413 298-419 (436)
230 TIGR00126 deoC deoxyribose-pho 95.9 0.1 2.2E-06 58.6 13.0 99 507-625 101-206 (211)
231 TIGR01536 asn_synth_AEB aspara 95.8 0.021 4.5E-07 70.8 8.2 117 10-164 39-163 (467)
232 cd02930 DCR_FMN 2,4-dienoyl-Co 95.6 0.13 2.8E-06 61.8 13.6 110 508-628 188-311 (353)
233 TIGR03442 conserved hypothetic 95.6 0.031 6.8E-07 64.1 7.9 131 13-161 84-223 (251)
234 PRK08385 nicotinate-nucleotide 95.6 0.083 1.8E-06 61.5 11.3 99 500-624 162-260 (278)
235 PRK05848 nicotinate-nucleotide 95.6 0.063 1.4E-06 62.3 10.3 92 508-624 166-258 (273)
236 PRK05283 deoxyribose-phosphate 95.5 0.094 2E-06 60.3 11.3 103 506-621 113-222 (257)
237 TIGR03104 trio_amidotrans aspa 95.4 0.04 8.7E-07 70.4 8.7 116 11-164 41-165 (589)
238 TIGR01318 gltD_gamma_fam gluta 95.4 0.0026 5.6E-08 78.9 -1.9 86 1210-1298 2-87 (467)
239 cd00959 DeoC 2-deoxyribose-5-p 95.4 0.09 2E-06 58.3 10.3 95 508-622 101-202 (203)
240 PRK13125 trpA tryptophan synth 95.3 0.33 7.1E-06 55.5 15.0 105 507-628 115-219 (244)
241 PRK12769 putative oxidoreducta 95.3 0.0025 5.3E-08 82.2 -2.7 80 1216-1298 193-273 (654)
242 PRK12775 putative trifunctiona 95.2 0.0044 9.5E-08 83.4 -0.8 81 1215-1298 298-378 (1006)
243 cd04731 HisF The cyclase subun 95.0 0.088 1.9E-06 59.7 9.2 77 536-628 151-228 (243)
244 PRK12809 putative oxidoreducta 94.9 0.0041 8.9E-08 80.0 -2.3 80 1216-1298 176-256 (639)
245 PF05690 ThiG: Thiazole biosyn 94.8 0.21 4.6E-06 56.3 11.2 75 536-626 133-207 (247)
246 cd04747 OYE_like_5_FMN Old yel 94.8 0.17 3.6E-06 61.1 11.2 104 510-628 197-333 (361)
247 PRK13585 1-(5-phosphoribosyl)- 94.8 0.16 3.5E-06 57.4 10.5 77 536-628 151-227 (241)
248 cd04732 HisA HisA. Phosphorib 94.7 0.19 4.1E-06 56.4 10.7 77 536-628 148-224 (234)
249 PRK10605 N-ethylmaleimide redu 94.7 0.28 6.1E-06 59.3 12.7 117 494-628 188-326 (362)
250 PLN02172 flavin-containing mon 94.7 0.068 1.5E-06 66.5 7.7 180 1209-1412 162-356 (461)
251 PF00724 Oxidored_FMN: NADH:fl 94.7 0.065 1.4E-06 64.1 7.2 128 494-628 178-326 (341)
252 CHL00162 thiG thiamin biosynth 94.6 0.2 4.3E-06 57.1 10.3 77 535-627 146-222 (267)
253 TIGR00007 phosphoribosylformim 94.6 0.17 3.7E-06 56.8 10.0 76 537-628 148-223 (230)
254 PLN02411 12-oxophytodienoate r 94.5 0.29 6.2E-06 59.8 12.4 125 494-628 194-347 (391)
255 cd02929 TMADH_HD_FMN Trimethyl 94.5 0.18 3.9E-06 61.1 10.5 109 510-628 203-324 (370)
256 PRK14024 phosphoribosyl isomer 94.5 0.17 3.6E-06 57.7 9.7 76 537-628 149-227 (241)
257 PF04131 NanE: Putative N-acet 94.4 0.19 4.1E-06 55.2 9.4 95 508-625 79-175 (192)
258 cd04727 pdxS PdxS is a subunit 94.4 0.17 3.7E-06 58.6 9.4 105 510-628 100-230 (283)
259 TIGR03572 WbuZ glycosyl amidat 94.4 0.22 4.8E-06 56.1 10.2 74 537-626 156-230 (232)
260 PRK00748 1-(5-phosphoribosyl)- 94.3 0.17 3.8E-06 56.7 9.3 76 537-628 149-225 (233)
261 PLN02549 asparagine synthase ( 94.3 0.12 2.7E-06 65.9 9.0 113 12-164 43-164 (578)
262 TIGR00343 pyridoxal 5'-phospha 94.3 0.17 3.7E-06 58.6 9.2 104 511-628 103-233 (287)
263 TIGR01304 IMP_DH_rel_2 IMP deh 94.2 0.24 5.2E-06 60.0 10.7 99 505-624 116-217 (369)
264 PRK11749 dihydropyrimidine deh 94.2 0.0065 1.4E-07 75.0 -2.6 86 1210-1298 2-87 (457)
265 PRK08255 salicylyl-CoA 5-hydro 94.2 0.22 4.8E-06 65.7 11.2 108 509-628 603-722 (765)
266 COG0034 PurF Glutamine phospho 94.2 0.2 4.3E-06 61.2 9.6 128 14-169 74-211 (470)
267 cd00331 IGPS Indole-3-glycerol 94.2 0.25 5.5E-06 55.1 10.1 100 507-628 107-206 (217)
268 PRK01033 imidazole glycerol ph 94.1 0.13 2.9E-06 59.2 7.9 76 536-628 154-231 (258)
269 KOG1799|consensus 94.1 0.11 2.4E-06 60.8 7.1 149 506-695 257-422 (471)
270 TIGR00735 hisF imidazoleglycer 94.1 0.3 6.5E-06 56.1 10.7 76 536-627 157-233 (254)
271 TIGR03108 eps_aminotran_1 exos 93.8 0.18 3.8E-06 65.1 9.1 117 11-164 42-166 (628)
272 PRK04180 pyridoxal biosynthesi 93.8 0.16 3.5E-06 59.0 7.7 35 594-628 203-239 (293)
273 PRK07695 transcriptional regul 93.8 0.34 7.3E-06 53.5 10.0 94 515-628 87-182 (201)
274 PRK11840 bifunctional sulfur c 93.8 0.34 7.4E-06 57.3 10.4 75 536-626 207-281 (326)
275 PRK08649 inosine 5-monophospha 93.5 0.28 6.1E-06 59.4 9.5 100 505-624 115-216 (368)
276 PRK09431 asnB asparagine synth 93.5 0.22 4.8E-06 63.3 9.1 114 11-163 42-164 (554)
277 PF13230 GATase_4: Glutamine a 93.3 0.1 2.2E-06 60.6 5.1 103 14-138 74-187 (271)
278 TIGR03378 glycerol3P_GlpB glyc 93.0 0.6 1.3E-05 57.4 11.3 132 1262-1400 245-418 (419)
279 PRK12831 putative oxidoreducta 92.9 0.017 3.8E-07 71.6 -2.0 82 1214-1298 6-87 (464)
280 TIGR03128 RuMP_HxlA 3-hexulose 92.9 0.83 1.8E-05 50.4 11.3 101 508-627 89-190 (206)
281 TIGR00735 hisF imidazoleglycer 92.8 0.29 6.3E-06 56.2 7.8 78 535-628 31-108 (254)
282 TIGR00262 trpA tryptophan synt 92.7 1.4 3.1E-05 50.9 13.3 110 506-630 125-234 (256)
283 TIGR01292 TRX_reduct thioredox 92.7 0.49 1.1E-05 54.1 9.6 94 1243-1341 2-113 (300)
284 PRK08275 putative oxidoreducta 92.7 0.18 3.8E-06 64.2 6.4 50 1357-1407 357-407 (554)
285 PTZ00077 asparagine synthetase 92.5 0.35 7.6E-06 62.0 8.7 115 12-163 48-171 (586)
286 PRK12810 gltD glutamate syntha 92.3 0.022 4.9E-07 70.7 -2.1 90 1206-1298 2-91 (471)
287 PTZ00314 inosine-5'-monophosph 92.3 1.1 2.5E-05 56.3 12.8 65 538-621 244-308 (495)
288 PF01729 QRPTase_C: Quinolinat 92.3 0.67 1.5E-05 50.4 9.3 94 510-628 66-160 (169)
289 cd04731 HisF The cyclase subun 92.3 0.36 7.9E-06 54.7 7.7 76 535-627 28-104 (243)
290 PF00977 His_biosynth: Histidi 92.1 0.78 1.7E-05 52.0 10.1 74 536-627 149-224 (229)
291 PRK14024 phosphoribosyl isomer 91.8 0.63 1.4E-05 53.1 9.0 77 535-628 33-109 (241)
292 PRK06854 adenylylsulfate reduc 91.7 0.21 4.5E-06 64.3 5.5 42 1365-1406 390-433 (608)
293 PRK12778 putative bifunctional 91.7 0.035 7.5E-07 72.9 -1.5 82 1214-1298 294-376 (752)
294 cd04726 KGPDC_HPS 3-Keto-L-gul 91.6 1.2 2.6E-05 48.9 10.5 98 508-626 90-189 (202)
295 cd01571 NAPRTase_B Nicotinate 91.5 1.2 2.7E-05 52.6 11.2 105 509-627 169-277 (302)
296 PRK02083 imidazole glycerol ph 91.5 0.52 1.1E-05 54.0 7.8 78 535-628 31-108 (253)
297 PRK07028 bifunctional hexulose 91.4 0.73 1.6E-05 56.9 9.6 149 509-692 95-245 (430)
298 PRK02083 imidazole glycerol ph 91.4 1.2 2.7E-05 51.0 10.8 75 537-628 156-232 (253)
299 PRK07428 nicotinate-nucleotide 91.2 0.89 1.9E-05 53.4 9.5 90 510-624 182-272 (288)
300 PRK07896 nicotinate-nucleotide 91.2 1.2 2.6E-05 52.4 10.5 91 509-624 185-275 (289)
301 cd01909 betaLS_CarA_N Glutamin 91.1 0.8 1.7E-05 51.1 8.5 48 115-164 97-145 (199)
302 PRK13800 putative oxidoreducta 91.1 0.24 5.2E-06 66.5 5.3 49 1357-1406 362-411 (897)
303 PRK00278 trpC indole-3-glycero 90.4 1.4 3E-05 51.1 10.0 101 506-628 145-245 (260)
304 PLN02274 inosine-5'-monophosph 90.4 1.8 3.9E-05 54.7 11.8 66 538-622 251-316 (505)
305 PF01791 DeoC: DeoC/LacD famil 90.4 1.4 3.1E-05 49.9 10.0 103 507-624 111-229 (236)
306 PRK13587 1-(5-phosphoribosyl)- 90.1 1.9 4.2E-05 49.1 10.7 75 537-628 151-226 (234)
307 cd04724 Tryptophan_synthase_al 89.9 4.1 8.9E-05 46.6 13.2 107 507-629 115-221 (242)
308 PF14691 Fer4_20: Dihydroprymi 89.9 0.053 1.1E-06 54.9 -1.8 68 1227-1297 1-68 (111)
309 PRK09231 fumarate reductase fl 89.9 0.46 9.9E-06 60.9 6.1 51 1356-1407 358-417 (582)
310 CHL00200 trpA tryptophan synth 89.7 8.4 0.00018 44.9 15.6 110 506-630 129-238 (263)
311 PRK13111 trpA tryptophan synth 89.7 4.4 9.6E-05 47.0 13.3 109 506-630 127-235 (258)
312 KOG0572|consensus 89.6 0.95 2.1E-05 54.1 7.8 131 10-165 67-214 (474)
313 cd04723 HisA_HisF Phosphoribos 89.6 2.2 4.7E-05 48.6 10.5 75 536-628 148-223 (233)
314 COG0367 AsnB Asparagine syntha 88.9 1.2 2.5E-05 56.8 8.6 101 26-164 58-164 (542)
315 cd00956 Transaldolase_FSA Tran 88.8 4.5 9.8E-05 45.5 12.2 105 505-624 61-186 (211)
316 PRK08883 ribulose-phosphate 3- 88.8 6.1 0.00013 44.8 13.3 105 508-626 93-198 (220)
317 PRK08071 L-aspartate oxidase; 88.7 0.63 1.4E-05 58.7 6.1 48 1357-1405 333-389 (510)
318 PRK00748 1-(5-phosphoribosyl)- 88.6 1.3 2.8E-05 49.9 7.8 77 535-627 31-107 (233)
319 COG0157 NadC Nicotinate-nucleo 88.5 1.7 3.7E-05 50.5 8.8 91 509-624 173-263 (280)
320 PF00478 IMPDH: IMP dehydrogen 88.3 2 4.2E-05 51.9 9.4 101 504-623 69-177 (352)
321 PRK06843 inosine 5-monophospha 88.3 2 4.3E-05 52.7 9.7 67 538-623 156-222 (404)
322 COG0493 GltD NADPH-dependent g 88.3 0.075 1.6E-06 65.9 -2.4 54 1242-1298 16-69 (457)
323 cd04732 HisA HisA. Phosphorib 88.0 1.3 2.9E-05 49.7 7.5 77 535-627 30-106 (234)
324 PRK00043 thiE thiamine-phospha 87.8 1.3 2.9E-05 48.7 7.2 74 539-627 116-192 (212)
325 TIGR00875 fsa_talC_mipB fructo 87.6 4.8 0.0001 45.5 11.4 103 506-623 62-185 (213)
326 PRK06263 sdhA succinate dehydr 87.5 0.82 1.8E-05 58.1 6.0 49 1357-1406 349-405 (543)
327 PRK05742 nicotinate-nucleotide 87.5 3.3 7.2E-05 48.5 10.4 86 511-624 177-262 (277)
328 COG2509 Uncharacterized FAD-de 87.4 0.54 1.2E-05 57.7 4.0 46 1358-1404 438-483 (486)
329 PLN02981 glucosamine:fructose- 87.3 1.4 3E-05 57.7 8.1 110 12-145 87-208 (680)
330 PRK09016 quinolinate phosphori 87.2 3.5 7.6E-05 48.7 10.5 87 510-624 195-281 (296)
331 cd00945 Aldolase_Class_I Class 87.2 6.1 0.00013 42.5 11.7 100 507-623 96-201 (201)
332 PRK07803 sdhA succinate dehydr 87.1 0.91 2E-05 58.8 6.2 51 1357-1407 392-450 (626)
333 PF00743 FMO-like: Flavin-bind 87.1 4.1 8.8E-05 51.9 11.8 87 1320-1412 312-400 (531)
334 PF13738 Pyr_redox_3: Pyridine 87.0 2 4.3E-05 46.5 7.9 54 1280-1338 81-136 (203)
335 PRK06096 molybdenum transport 86.8 3.9 8.4E-05 48.1 10.5 93 507-624 173-265 (284)
336 TIGR01316 gltA glutamate synth 86.2 0.13 2.7E-06 63.7 -2.1 72 1224-1298 2-75 (449)
337 PRK01362 putative translaldola 86.2 7.8 0.00017 43.9 12.1 104 505-623 61-185 (214)
338 TIGR01334 modD putative molybd 86.1 3.1 6.7E-05 48.8 9.2 92 508-624 173-264 (277)
339 TIGR02061 aprA adenosine phosp 86.0 0.98 2.1E-05 58.3 5.6 43 1365-1407 401-445 (614)
340 PRK06559 nicotinate-nucleotide 85.9 2 4.3E-05 50.5 7.5 95 500-624 175-270 (290)
341 COG2022 ThiG Uncharacterized e 85.6 1.5 3.3E-05 49.5 6.0 75 535-625 139-213 (262)
342 PRK08662 nicotinate phosphorib 85.5 4.9 0.00011 48.5 10.7 104 511-629 187-294 (343)
343 cd01573 modD_like ModD; Quinol 85.5 5 0.00011 46.9 10.5 89 511-624 171-259 (272)
344 PRK04302 triosephosphate isome 85.4 7.7 0.00017 43.8 11.7 108 506-628 99-207 (223)
345 TIGR01176 fum_red_Fp fumarate 85.2 1.1 2.4E-05 57.4 5.6 50 1356-1406 357-415 (580)
346 TIGR01812 sdhA_frdA_Gneg succi 85.2 1.1 2.4E-05 57.1 5.5 49 1357-1406 343-404 (566)
347 PF13434 K_oxygenase: L-lysine 85.0 1.7 3.6E-05 52.3 6.6 53 1212-1264 151-213 (341)
348 PRK07804 L-aspartate oxidase; 85.0 1.1 2.3E-05 57.1 5.2 49 1356-1405 357-414 (541)
349 cd01572 QPRTase Quinolinate ph 84.9 4.8 0.0001 47.0 10.0 86 511-624 169-255 (268)
350 cd00516 PRTase_typeII Phosphor 84.8 5 0.00011 46.7 10.2 100 511-625 169-269 (281)
351 TIGR00078 nadC nicotinate-nucl 84.8 5.6 0.00012 46.4 10.5 87 510-624 164-251 (265)
352 PF00743 FMO-like: Flavin-bind 84.7 2.2 4.7E-05 54.4 7.7 135 1242-1379 2-192 (531)
353 TIGR01305 GMP_reduct_1 guanosi 84.6 3.5 7.5E-05 49.4 8.7 100 502-621 75-176 (343)
354 COG0159 TrpA Tryptophan syntha 84.6 21 0.00044 41.8 14.6 113 505-630 76-240 (265)
355 PRK06543 nicotinate-nucleotide 84.5 3.8 8.2E-05 48.1 8.9 97 500-624 167-266 (281)
356 PRK04176 ribulose-1,5-biphosph 84.4 14 0.0003 42.8 13.5 161 1242-1406 26-256 (257)
357 PRK06452 sdhA succinate dehydr 84.3 1.6 3.5E-05 55.9 6.4 50 1357-1407 347-406 (566)
358 cd01568 QPRTase_NadC Quinolina 84.1 5.6 0.00012 46.4 10.2 87 512-624 169-256 (269)
359 PRK09077 L-aspartate oxidase; 84.0 1.3 2.9E-05 56.2 5.4 48 1357-1405 354-410 (536)
360 PRK07188 nicotinate phosphorib 83.9 7.2 0.00016 47.2 11.2 114 509-625 188-312 (352)
361 COG2072 TrkA Predicted flavopr 83.8 8.3 0.00018 48.1 12.1 136 1242-1380 9-185 (443)
362 cd00958 DhnA Class I fructose- 83.7 4.3 9.3E-05 45.9 8.8 64 540-627 149-218 (235)
363 COG3010 NanE Putative N-acetyl 83.7 5.4 0.00012 44.6 9.0 94 509-624 115-210 (229)
364 TIGR00734 hisAF_rel hisA/hisF 83.7 2.6 5.7E-05 47.6 7.1 34 594-627 184-217 (221)
365 PLN02591 tryptophan synthase 83.7 22 0.00048 41.2 14.6 110 506-630 116-225 (250)
366 PRK12656 fructose-6-phosphate 83.5 25 0.00055 40.1 14.6 70 541-623 120-189 (222)
367 PTZ00394 glucosamine-fructose- 83.3 2.8 6E-05 54.8 8.0 123 12-164 98-253 (670)
368 PRK08641 sdhA succinate dehydr 83.2 1.5 3.3E-05 56.3 5.6 49 1357-1406 356-412 (589)
369 TIGR02129 hisA_euk phosphoribo 83.2 2.4 5.2E-05 49.0 6.5 69 537-628 41-109 (253)
370 PRK13585 1-(5-phosphoribosyl)- 83.1 3.3 7.2E-05 46.9 7.6 77 535-627 33-109 (241)
371 cd00405 PRAI Phosphoribosylant 82.9 5 0.00011 44.4 8.8 33 594-627 152-185 (203)
372 TIGR01811 sdhA_Bsu succinate d 82.9 1.8 4E-05 55.8 6.1 49 1357-1406 371-427 (603)
373 PRK05096 guanosine 5'-monophos 82.6 4.6 0.0001 48.4 8.6 98 502-620 76-176 (346)
374 PRK14114 1-(5-phosphoribosyl)- 82.4 3.5 7.6E-05 47.3 7.5 72 538-627 148-227 (241)
375 PRK06069 sdhA succinate dehydr 82.4 1.9 4.1E-05 55.3 5.9 50 1357-1407 353-417 (577)
376 TIGR00551 nadB L-aspartate oxi 82.3 1.7 3.7E-05 54.5 5.4 48 1357-1405 334-390 (488)
377 PLN02716 nicotinate-nucleotide 82.3 5.7 0.00012 47.2 9.3 101 506-624 185-291 (308)
378 PRK06106 nicotinate-nucleotide 82.3 4.8 0.0001 47.3 8.6 87 510-624 180-267 (281)
379 PRK04128 1-(5-phosphoribosyl)- 82.2 2.8 6.1E-05 47.7 6.5 74 536-627 32-106 (228)
380 PRK13587 1-(5-phosphoribosyl)- 81.8 3.9 8.4E-05 46.7 7.5 74 537-627 34-109 (234)
381 cd00564 TMP_TenI Thiamine mono 81.6 2.8 6.2E-05 45.0 6.1 75 538-627 106-182 (196)
382 COG0107 HisF Imidazoleglycerol 81.5 5.1 0.00011 45.5 8.0 67 539-623 160-229 (256)
383 cd00381 IMPDH IMPDH: The catal 81.2 8.4 0.00018 46.1 10.4 96 505-622 67-162 (325)
384 TIGR03140 AhpF alkyl hydropero 81.1 5.2 0.00011 50.6 9.1 96 1240-1340 211-323 (515)
385 PRK07226 fructose-bisphosphate 81.0 15 0.00033 42.7 12.1 63 540-626 166-234 (267)
386 PF01134 GIDA: Glucose inhibit 80.9 3.5 7.7E-05 50.5 7.2 92 1243-1338 1-150 (392)
387 cd00452 KDPG_aldolase KDPG and 80.6 3.2 6.9E-05 45.7 6.1 32 594-626 143-174 (190)
388 PRK07512 L-aspartate oxidase; 80.4 2 4.2E-05 54.4 5.0 49 1357-1406 342-399 (513)
389 PRK09140 2-dehydro-3-deoxy-6-p 80.3 2.8 6.2E-05 46.9 5.7 33 594-627 151-183 (206)
390 COG0106 HisA Phosphoribosylfor 80.2 6.9 0.00015 44.9 8.7 74 536-626 33-107 (241)
391 PRK08626 fumarate reductase fl 80.2 2.1 4.7E-05 55.7 5.4 50 1357-1407 373-432 (657)
392 PRK06978 nicotinate-nucleotide 79.9 12 0.00025 44.4 10.6 88 506-624 191-278 (294)
393 COG0106 HisA Phosphoribosylfor 79.8 12 0.00027 42.9 10.5 75 536-628 149-226 (241)
394 PRK08401 L-aspartate oxidase; 79.8 2.2 4.7E-05 53.3 5.0 46 1357-1403 311-365 (466)
395 PRK13586 1-(5-phosphoribosyl)- 79.5 4.2 9.1E-05 46.4 6.8 69 540-627 152-222 (232)
396 PRK13802 bifunctional indole-3 79.4 12 0.00025 49.3 11.4 104 504-629 143-246 (695)
397 PRK08205 sdhA succinate dehydr 79.3 2.9 6.4E-05 53.7 6.1 54 1350-1406 358-420 (583)
398 PRK12770 putative glutamate sy 79.1 1.8 3.9E-05 51.8 3.9 30 1238-1267 15-44 (352)
399 TIGR00640 acid_CoA_mut_C methy 79.1 9.3 0.0002 40.0 8.6 75 529-620 35-109 (132)
400 cd04723 HisA_HisF Phosphoribos 79.1 4.1 8.8E-05 46.4 6.5 76 535-627 36-111 (233)
401 PRK05945 sdhA succinate dehydr 79.0 3.2 7E-05 53.2 6.4 40 1367-1406 367-415 (575)
402 PRK01033 imidazole glycerol ph 78.9 5.3 0.00011 46.2 7.5 76 535-626 31-106 (258)
403 PRK09078 sdhA succinate dehydr 78.8 3.2 7E-05 53.5 6.3 57 1350-1406 364-430 (598)
404 TIGR01816 sdhA_forward succina 78.8 2.6 5.7E-05 54.0 5.4 57 1350-1406 333-398 (565)
405 PLN02172 flavin-containing mon 78.6 25 0.00055 44.1 13.8 55 1281-1338 111-171 (461)
406 PRK07573 sdhA succinate dehydr 78.4 2.8 6.1E-05 54.5 5.6 48 1357-1405 407-463 (640)
407 cd00429 RPE Ribulose-5-phospha 78.0 23 0.0005 38.8 11.9 103 509-627 93-198 (211)
408 PRK08072 nicotinate-nucleotide 78.0 13 0.00029 43.7 10.3 87 510-624 174-261 (277)
409 PRK12653 fructose-6-phosphate 77.9 23 0.0005 40.3 12.0 104 505-623 63-187 (220)
410 PRK15317 alkyl hydroperoxide r 77.9 6.7 0.00014 49.7 8.6 94 1242-1340 212-322 (517)
411 PTZ00170 D-ribulose-5-phosphat 77.8 11 0.00023 43.0 9.4 109 512-625 54-203 (228)
412 TIGR01949 AroFGH_arch predicte 77.8 10 0.00022 43.8 9.3 92 512-627 123-231 (258)
413 TIGR02134 transald_staph trans 77.2 15 0.00034 42.1 10.4 94 511-620 102-196 (236)
414 cd01910 Wali7 This domain is p 77.0 3.6 7.7E-05 46.8 5.2 50 116-165 122-173 (224)
415 PLN02815 L-aspartate oxidase 77.0 3.1 6.8E-05 53.6 5.4 48 1357-1405 378-434 (594)
416 TIGR01919 hisA-trpF 1-(5-phosp 77.0 6.2 0.00013 45.4 7.2 72 539-627 36-107 (243)
417 PRK12842 putative succinate de 76.9 7.5 0.00016 49.9 8.8 114 1231-1347 147-282 (574)
418 KOG1606|consensus 76.5 5.7 0.00012 44.2 6.3 35 594-628 207-243 (296)
419 PRK10262 thioredoxin reductase 76.4 12 0.00027 43.9 9.8 94 1240-1340 5-117 (321)
420 TIGR01919 hisA-trpF 1-(5-phosp 76.4 6.3 0.00014 45.3 7.1 70 540-627 155-229 (243)
421 COG0134 TrpC Indole-3-glycerol 76.2 16 0.00035 42.4 10.1 102 505-628 140-241 (254)
422 TIGR02032 GG-red-SF geranylger 76.1 11 0.00024 42.7 9.1 93 1243-1339 2-147 (295)
423 PF00218 IGPS: Indole-3-glycer 76.1 5.8 0.00013 46.0 6.7 103 504-628 141-243 (254)
424 TIGR00693 thiE thiamine-phosph 75.8 7.5 0.00016 42.5 7.3 75 541-627 110-184 (196)
425 TIGR03572 WbuZ glycosyl amidat 75.6 8.6 0.00019 43.4 7.9 77 535-627 31-107 (232)
426 PLN02334 ribulose-phosphate 3- 75.5 17 0.00037 41.2 10.1 101 510-626 104-205 (229)
427 PRK06175 L-aspartate oxidase; 74.5 4.6 9.9E-05 50.0 5.7 48 1357-1405 332-388 (433)
428 TIGR00292 thiazole biosynthesi 74.2 45 0.00097 38.6 13.3 160 1241-1404 21-253 (254)
429 KOG0571|consensus 73.9 8.1 0.00018 47.2 7.2 52 120-171 118-171 (543)
430 COG0029 NadB Aspartate oxidase 73.9 4.1 8.9E-05 50.8 5.0 51 1356-1407 341-400 (518)
431 PRK09427 bifunctional indole-3 73.9 12 0.00026 46.9 9.1 101 505-628 143-243 (454)
432 PRK05675 sdhA succinate dehydr 73.9 3.9 8.5E-05 52.5 5.1 57 1350-1406 341-407 (570)
433 PLN00128 Succinate dehydrogena 73.8 4.6 0.0001 52.5 5.8 57 1350-1406 402-468 (635)
434 TIGR01306 GMP_reduct_2 guanosi 73.6 11 0.00024 45.2 8.2 115 478-621 45-163 (321)
435 KOG1399|consensus 73.4 13 0.00028 46.5 9.2 135 1240-1378 5-194 (448)
436 PRK08958 sdhA succinate dehydr 73.4 4.4 9.4E-05 52.3 5.3 57 1350-1406 359-425 (588)
437 PRK12655 fructose-6-phosphate 73.3 34 0.00073 39.0 11.7 66 543-621 120-185 (220)
438 PF00977 His_biosynth: Histidi 72.7 4.9 0.00011 45.6 5.0 77 535-628 30-107 (229)
439 PRK13957 indole-3-glycerol-pho 72.4 21 0.00045 41.4 9.9 102 504-628 134-235 (247)
440 PRK07395 L-aspartate oxidase; 72.4 3.7 7.9E-05 52.6 4.3 45 1357-1402 348-401 (553)
441 PRK07114 keto-hydroxyglutarate 72.3 13 0.00027 42.4 8.0 111 508-625 55-190 (222)
442 TIGR00007 phosphoribosylformim 72.0 12 0.00026 42.1 7.9 77 535-627 29-105 (230)
443 PRK14114 1-(5-phosphoribosyl)- 71.9 11 0.00023 43.4 7.5 75 535-627 31-106 (241)
444 PRK06847 hypothetical protein; 71.9 13 0.00028 44.4 8.6 27 1241-1267 4-30 (375)
445 COG0269 SgbH 3-hexulose-6-phos 71.9 25 0.00054 39.9 10.0 90 512-622 45-136 (217)
446 cd02072 Glm_B12_BD B12 binding 71.6 27 0.00058 36.7 9.5 72 533-620 36-112 (128)
447 PF01884 PcrB: PcrB family; I 71.6 11 0.00023 43.2 7.2 65 546-628 152-216 (230)
448 PLN02446 (5-phosphoribosyl)-5- 71.3 10 0.00022 44.2 7.1 73 535-628 44-116 (262)
449 TIGR01163 rpe ribulose-phospha 71.3 39 0.00084 37.2 11.5 106 508-627 91-197 (210)
450 cd02812 PcrB_like PcrB_like pr 71.2 11 0.00023 42.9 7.2 69 539-627 140-208 (219)
451 PTZ00139 Succinate dehydrogena 71.1 6 0.00013 51.3 5.9 41 1366-1406 398-447 (617)
452 COG0214 SNZ1 Pyridoxine biosyn 71.0 11 0.00024 42.8 7.0 35 594-628 208-242 (296)
453 PRK07057 sdhA succinate dehydr 70.7 5.5 0.00012 51.4 5.4 56 1350-1406 363-428 (591)
454 COG0107 HisF Imidazoleglycerol 70.7 16 0.00035 41.7 8.2 73 539-628 35-108 (256)
455 PRK09754 phenylpropionate diox 70.4 10 0.00022 46.3 7.3 93 1241-1340 3-112 (396)
456 COG0492 TrxB Thioredoxin reduc 70.4 33 0.00072 40.9 11.4 90 1243-1340 5-115 (305)
457 PRK04128 1-(5-phosphoribosyl)- 69.5 3 6.5E-05 47.4 2.4 35 594-628 182-216 (228)
458 TIGR01182 eda Entner-Doudoroff 69.1 21 0.00046 40.2 8.8 82 508-620 44-125 (204)
459 cd00377 ICL_PEPM Members of th 68.3 52 0.0011 37.9 12.0 120 498-621 45-178 (243)
460 PLN02460 indole-3-glycerol-pho 68.1 20 0.00043 43.2 8.8 105 504-628 213-322 (338)
461 PRK13586 1-(5-phosphoribosyl)- 67.7 15 0.00033 41.9 7.6 76 535-627 31-106 (232)
462 TIGR01769 GGGP geranylgeranylg 67.6 18 0.00038 40.9 7.8 65 540-622 140-204 (205)
463 TIGR01302 IMP_dehydrog inosine 67.6 13 0.00028 46.6 7.5 67 538-623 227-293 (450)
464 PRK08274 tricarballylate dehyd 67.6 6.5 0.00014 48.8 5.0 55 1350-1407 401-464 (466)
465 PF00682 HMGL-like: HMGL-like 67.5 27 0.00059 39.4 9.5 60 504-563 162-224 (237)
466 PRK09722 allulose-6-phosphate 67.1 46 0.001 38.2 11.2 106 509-628 96-202 (229)
467 PRK09564 coenzyme A disulfide 67.0 10 0.00023 46.6 6.6 95 1243-1341 2-116 (444)
468 COG2081 Predicted flavoprotein 66.9 24 0.00051 43.4 9.1 68 1282-1354 112-189 (408)
469 PF00290 Trp_syntA: Tryptophan 66.9 84 0.0018 36.8 13.3 50 577-630 184-233 (259)
470 PF01134 GIDA: Glucose inhibit 66.7 6.7 0.00015 48.1 4.7 43 1365-1408 349-392 (392)
471 PRK08564 5'-methylthioadenosin 66.1 55 0.0012 38.4 11.8 111 510-630 72-198 (267)
472 PRK10157 putative oxidoreducta 65.2 19 0.00042 44.5 8.4 37 1371-1407 295-338 (428)
473 PRK06552 keto-hydroxyglutarate 64.8 26 0.00056 39.7 8.5 68 538-627 120-187 (213)
474 PRK07455 keto-hydroxyglutarate 64.5 9.3 0.0002 42.2 4.9 67 539-626 117-183 (187)
475 PRK09136 5'-methylthioadenosin 64.5 96 0.0021 36.0 13.2 49 582-630 139-191 (245)
476 PRK08091 ribulose-phosphate 3- 64.0 64 0.0014 37.0 11.5 104 509-625 104-209 (228)
477 COG0644 FixC Dehydrogenases (f 63.9 23 0.00051 43.2 8.7 93 1243-1339 5-151 (396)
478 cd00439 Transaldolase Transald 63.7 57 0.0012 37.9 11.2 103 505-623 97-234 (252)
479 cd04726 KGPDC_HPS 3-Keto-L-gul 63.6 52 0.0011 36.1 10.5 89 511-622 41-132 (202)
480 PRK05581 ribulose-phosphate 3- 63.5 60 0.0013 36.0 11.2 106 508-627 96-202 (220)
481 PRK05335 tRNA (uracil-5-)-meth 63.0 9.2 0.0002 47.5 4.9 48 1365-1413 324-372 (436)
482 TIGR01768 GGGP-family geranylg 62.9 25 0.00054 40.2 7.9 65 546-627 148-212 (223)
483 PRK02615 thiamine-phosphate py 62.2 15 0.00033 44.5 6.4 75 539-627 252-326 (347)
484 PRK14057 epimerase; Provisiona 62.1 1.1E+02 0.0023 35.9 12.8 105 510-625 112-223 (254)
485 PLN02617 imidazole glycerol ph 61.1 37 0.0008 43.6 9.9 97 512-626 374-515 (538)
486 PRK08244 hypothetical protein; 61.1 33 0.00072 43.0 9.5 55 1282-1339 101-158 (493)
487 PRK04169 geranylgeranylglycery 61.0 23 0.00049 40.7 7.3 32 596-627 186-217 (232)
488 PF01494 FAD_binding_3: FAD bi 60.4 12 0.00027 43.4 5.2 56 1282-1339 112-171 (356)
489 PRK08745 ribulose-phosphate 3- 60.0 75 0.0016 36.3 11.1 102 509-625 98-201 (223)
490 PRK08227 autoinducer 2 aldolas 59.9 63 0.0014 37.9 10.7 93 505-627 124-230 (264)
491 COG0176 MipB Transaldolase [Ca 59.7 1.9E+02 0.0042 33.5 14.2 126 481-621 51-198 (239)
492 PRK01438 murD UDP-N-acetylmura 59.4 15 0.00031 46.1 5.9 89 1240-1354 15-106 (480)
493 PRK06183 mhpA 3-(3-hydroxyphen 59.3 44 0.00096 42.5 10.3 54 1283-1339 115-173 (538)
494 PRK12842 putative succinate de 59.3 15 0.00033 47.1 6.2 59 1348-1409 505-572 (574)
495 PF02581 TMP-TENI: Thiamine mo 58.4 18 0.00038 39.5 5.6 83 523-623 95-177 (180)
496 PRK03903 transaldolase; Provis 58.2 1.1E+02 0.0023 36.3 12.1 46 575-620 158-207 (274)
497 TIGR01303 IMP_DH_rel_1 IMP deh 58.0 19 0.00041 45.5 6.5 68 538-624 228-295 (475)
498 PRK06184 hypothetical protein; 57.9 45 0.00097 42.0 9.9 66 1283-1354 111-179 (502)
499 cd00331 IGPS Indole-3-glycerol 57.6 11 0.00024 42.1 4.0 71 535-624 32-102 (217)
500 COG0135 TrpF Phosphoribosylant 57.5 57 0.0012 37.0 9.5 84 513-617 89-176 (208)
No 1
>KOG0399|consensus
Probab=100.00 E-value=0 Score=2937.26 Aligned_cols=1247 Identities=60% Similarity=0.996 Sum_probs=1183.0
Q ss_pred hHHHHHhhccCCCCCCCCCC--CCcccccccccccchHhHHHHHHhhhcccCCCCCCC-ccceeeccCCCCCchHHHHH-
Q psy12805 10 EEEFRLLAEKCQLEVLGQHE--NTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPD-IKQLYPVVEPNLSDSGAADC- 85 (1429)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~-~~~~~p~~~~~~sds~~~d~- 85 (1429)
+.-|||+|.||+|||..-|+ -|||+|||||||||||||+|||+|||++|+|.+|.+ +++|+||+++++|||++|||
T Consensus 283 ~S~~AlvHsRFSTNTfPsWdrAQPmR~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~lDnv 362 (2142)
T KOG0399|consen 283 KSHFALVHSRFSTNTFPSWDRAQPMRFLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAALDNV 362 (2142)
T ss_pred cccceeeeeccccCCCCCccccccchhhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhhhhHH
Confidence 45699999999999998777 999999999999999999999999999999999986 99999999999999999999
Q ss_pred --------------HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEe
Q psy12805 86 --------------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLK 151 (1429)
Q Consensus 86 --------------a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~ 151 (1429)
|+||||||||+|+++|+||+++||+|++|.||||||||+++|+|||||||+||||||||+|||+|+
T Consensus 363 ~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDGry~GA~LDRNGLRP~Ryy~Ts 442 (2142)
T KOG0399|consen 363 LELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDGRYCGAILDRNGLRPARYYITS 442 (2142)
T ss_pred HHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCCceeeeeeccCCCcceeeEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeccccccCCCCcccc---------------------------------------------------------
Q psy12805 152 DNVMVMASEVGVYDTDPANVQLK--------------------------------------------------------- 174 (1429)
Q Consensus 152 d~~~~~~se~g~~~~~~~~v~~~--------------------------------------------------------- 174 (1429)
|++||+||||||+++||++|++|
T Consensus 443 dd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~g~v~dd~elK~ris~~~py~~wl~~~~~~l~~~~~~~~~s~~ 522 (2142)
T KOG0399|consen 443 DDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTELGQVVDDKELKKRISSRRPYGSWLSENIILLKPIKDSVLSSTA 522 (2142)
T ss_pred CCEEEEeecccccCCCHHHhhhccCcCCCeEEEEEccCCeEEecHHHHHHHhhcCcHHHHHHHhhhhhhhhhhhhhcccc
Confidence 99999999999999999999998
Q ss_pred --------------------------------CCC-------------chhhhHH----------------------h--
Q psy12805 175 --------------------------------IPM-------------DASLKCL----------------------I-- 185 (1429)
Q Consensus 175 --------------------------------~~m-------------d~pla~l----------------------i-- 185 (1429)
.|| |+||||| |
T Consensus 523 ~~~s~~~~e~~~~~d~~l~afgYt~E~v~mll~pMa~~gkEalgsMGnDaplA~LS~~p~llydYFkQlFAQVTNPpIDP 602 (2142)
T KOG0399|consen 523 VENSYLVLETLRSQDDVLLAFGYTSEQVQMLLEPMAKQGKEALGSMGNDAPLACLSDRPHLLYDYFKQLFAQVTNPPIDP 602 (2142)
T ss_pred cccccccchhhhccchhHHhccCcHHHHHHHHHHHHhcCCccccccCCCcceehhcCCccHHHHHHHHHHHhccCCCCCh
Confidence 344 9999999 0
Q ss_pred --------------------------------------------------------------------------------
Q psy12805 186 -------------------------------------------------------------------------------- 185 (1429)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (1429)
T Consensus 603 iRE~iVmSLec~IGp~gNllE~~~eq~~rl~L~~PvL~~~e~ealk~~~y~~wk~k~iditf~~~~Gv~Gl~~~ld~ic~ 682 (2142)
T KOG0399|consen 603 IREAIVMSLECYIGPEGNLLEPGPEQCSRLILKGPVLNEEEMEALKNDMYPGWKVKEIDITFDKSEGVKGLVKTLDRICE 682 (2142)
T ss_pred hhhhheEEEEeeecCCcCcccCChhHhceeeccCCcCCHHHHHHHhcCCCccceeeeeeeeeehhhhhhhHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------hhc---------------------cchhHHHHHhhccccccchHhH
Q psy12805 186 ----------------------------------LVH---------------------REVHHMCVLLGYGADAICPYLV 210 (1429)
Q Consensus 186 ----------------------------------~vh---------------------r~~h~~~~l~g~ga~av~pyl~ 210 (1429)
||| |++||||||+||||||||||||
T Consensus 683 ~A~eAv~~G~qiLVLSDR~~~~eRv~i~sllAvgaVHhhLIqn~lR~~valV~et~e~revHhfc~LlGyGadaicPyLa 762 (2142)
T KOG0399|consen 683 EADEAVRDGYQILVLSDRNDSAERVPIPSLLAVGAVHHHLIQNKLRMQVALVVETGEAREVHHFCVLLGYGADAICPYLA 762 (2142)
T ss_pred HHHHHHhccceEEEEecccCCcccCChHHHHHHhHHHHHHHHhhhhceEEEEEecCcceeeeeeeeeeccCccccchHHH
Confidence 777 9999999999999999999999
Q ss_pred HHHHHHHHhcC------------------CHHHHHhhhHHhHhhcccccccccCCCccceeecCCCHHHHhhcCCCCCCC
Q psy12805 211 FEMAKSLRAEG------------------NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSR 272 (1429)
Q Consensus 211 ~~~~~~~~~~~------------------~~~~a~~~g~~kvmskmgis~~~sy~gaq~fe~~gl~~~~~~~~f~gt~s~ 272 (1429)
+|++.+|.++| ||++|++.||||||||||||||+||+||||||++||++||||+||+||+||
T Consensus 763 ~Et~~RL~~~~~~~~~nn~~t~t~eq~~knY~kavn~GilKVmsKMGIStl~SYkgAQIFE~lGL~neVVd~cF~gt~Sr 842 (2142)
T KOG0399|consen 763 METLWRLSNKGLLDPRNNGPTVTEEQAQKNYRKAVNAGILKVMSKMGISTLASYKGAQIFEALGLDNEVVDKCFTGTVSR 842 (2142)
T ss_pred HHHHHHHHhccccccccCCCcccHHHHHHHHHHHhhhhHHHHHHHhChHHHhhccchhhhhhhccchHHHHHHhcCChhh
Confidence 99999998776 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccccccc--cccccCCCcceeeccCCCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q psy12805 273 LGGITFEVLAQEAYDRHFLSYSERTA--DMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMES 350 (1429)
Q Consensus 273 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~g~~~~r~~ge~h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 350 (1429)
|+|+||++||+|++.+|++|||++.. ....|++.|+||||.+||+|.|+|..|+.||+|+|+++..+|++|++..++.
T Consensus 843 i~G~Tfe~LA~dal~~h~rafpt~~~~~~s~~L~n~G~~h~R~gGe~H~N~P~aia~Lq~AvR~kne~ay~~Ys~~~~~~ 922 (2142)
T KOG0399|consen 843 IGGATFEELARDALSLHERAFPTDQTARFSKTLPNSGFYHFRDGGEKHVNEPLAIAKLQDAVRNKNEAAYAEYSKQHNEA 922 (2142)
T ss_pred hccccHHHHHHHHHHHHHhcCCCcccccccccCCCCcceEecCCccccCCCHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 99999999999999999999998744 2445999999999999999999999999999999999999999999998888
Q ss_pred cCccccccccccc-cCCCCCCCCCCCcccccccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCC
Q psy12805 351 VKYSTLRGQLDFV-THDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSG 429 (1429)
Q Consensus 351 ~~~~~lr~~l~~~-~~~~~i~~~~v~~~~~i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~ 429 (1429)
.+.|+|||||+|+ +++.|||+++|||+++|+++|++|||||||||.|+|++||+|||++|+++|||||||+|+|+.+..
T Consensus 923 ~r~~tlRglLefk~s~~~~IPl~~VEPaseIv~RFcTGaMS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~ 1002 (2142)
T KOG0399|consen 923 RRWCTLRGLLEFKFSDSVPIPLEEVEPASEIVKRFCTGAMSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLA 1002 (2142)
T ss_pred CccchhhhhheeccccCCcCchhhcCcHHHHHHHHhcccccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhccccc
Confidence 8999999999999 567799999999999999999999999999999999999999999999999999999999987532
Q ss_pred --CcccccceeecccCCCCCChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCH
Q psy12805 430 --DENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSI 507 (1429)
Q Consensus 430 --~~~~~~~I~Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~si 507 (1429)
.+.++|+|||+||||||||+.||.|||++||||+|||||||||+|||+||+..||++||++||+.|||||||||||||
T Consensus 1003 d~~d~~rSAIKQVASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSI 1082 (2142)
T KOG0399|consen 1003 DGVDTMRSAIKQVASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSI 1082 (2142)
T ss_pred ccchHHHHHHHHHhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccH
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
|||+|||++||++||+++|+||||+|+|+|++|.+++|+.||+|.||||+||||||+|++++|+|+||+++|+|+||+|+
T Consensus 1083 EDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv 1162 (2142)
T KOG0399|consen 1083 EDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLV 1162 (2142)
T ss_pred HHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHH
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVIN 667 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~n 667 (1429)
.|+||.||.|++|||+|||+||+.|++||||++||+|.||+++||+|||+||+|+||||||||||.||++|.|.||+|+|
T Consensus 1163 ~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVN 1242 (2142)
T KOG0399|consen 1163 LNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVN 1242 (2142)
T ss_pred hccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhcCCCccccccCCCCCccccCCChhHHHHhhhccCCCcccccCcccccCCccccccH
Q psy12805 668 YLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKRLDN 747 (1429)
Q Consensus 668 y~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~~~~~~k~~gldl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 747 (1429)
||..+++|+|.||+++|+++++|+|||+|+|....... -|+..|||+.||+++..++|+....+ ..+|+|.+...||+
T Consensus 1243 ff~yvaEEvR~imakLGfrtldemvGrtdlLk~~~di~-~K~~~lDls~lL~~a~~i~P~~s~~~-~kkq~h~l~~~LD~ 1320 (2142)
T KOG0399|consen 1243 FFFYVAEEVRGIMAKLGFRTLDEMVGRTDLLKARSDIV-VKATNLDLSPLLTPAGQIRPGASTKG-VKKQDHELGTALDN 1320 (2142)
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHhcchhhhcccccch-hhheeechhhhcchhhhcCCCccccc-hhhhhhcccchhhh
Confidence 99999999999999999999999999999998875443 58889999999999988888866444 78999999999999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEEeecCCcccccchhhhccccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCc
Q psy12805 748 TLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDA 827 (1429)
Q Consensus 748 ~~i~~~~~~~~~~~~~~~~~~~i~n~~r~~g~~l~~~i~~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~ 827 (1429)
++|.++.-.++.+. +++++..|.|+||++|++||++|++|||+.|||.++|+|+|+||||||||||+++|++
T Consensus 1321 ~li~e~ev~~~~~~-~~~~~~~I~NvDRa~g~~ls~~IsKryge~Gl~~~~i~i~~~GsAGQSfgaFLapGi~------- 1392 (2142)
T KOG0399|consen 1321 KLIDEAEVTLEIGL-PVFIEESIINVDRALGTRLSYEISKRYGETGLPKDTININFTGSAGQSFGAFLAPGIT------- 1392 (2142)
T ss_pred hhhhhhhhhhhccC-ceeeeeeEEecchhhhhhhhHHHHHHhcccCCCCceEEEEEEeccccccceeecCCcE-------
Confidence 99999888887665 6788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCccee
Q psy12805 828 NDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFS 907 (1429)
Q Consensus 828 ~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfg 907 (1429)
++|+|++|||||||||||+|||+||+.+.|++++|.|+||+|+||||+|.+|++|.||+||+
T Consensus 1393 ------------------~~L~GdaNDYVGKglsGG~iVI~Ppk~s~fkpeEn~IiGNvclYGATsG~~f~~G~AgERFa 1454 (2142)
T KOG0399|consen 1393 ------------------LRLEGDANDYVGKGLSGGKIVIYPPKASSFKPEENTIIGNVCLYGATSGDAFFRGVAGERFA 1454 (2142)
T ss_pred ------------------EEEeccccchhcccccCCeEEEeCCccCCCCcccceEEcceeeecccccceEEeccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeeecCChhhHHHHHHH
Q psy12805 908 VRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYVKSL 987 (1429)
Q Consensus 908 vr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~~~~~~l~~~ 987 (1429)
||||||.+||||+|||+|||||||+|||||++||||+||||||++|++|+|++|..++|.++|++..++++.|+.+||.|
T Consensus 1455 VRNSgA~aVVEg~GDh~cEYMTGG~vVVLgk~grN~aAgmsGGiAY~ld~d~~f~~kiN~e~Vdl~~vt~~~~~~~lK~l 1534 (2142)
T KOG0399|consen 1455 VRNSGANAVVEGVGDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAYLLDEDDDFLGKINKETVDLDSVTDPVDIAFLKSL 1534 (2142)
T ss_pred eeccCceeeeeeccCccceeecCCEEEEEcccchhhhhcccCceEEEEccccchhhhhhhhhcchhhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHHHHHhhcCCCCCCCeEEEecchhccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHhhhCCCCceeEE
Q psy12805 988 LVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVK 1067 (1429)
Q Consensus 988 ~~~~~~~t~s~~a~~~l~~~~~~~~~f~kV~p~ia~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1429)
|++|.+||+|.+|+.||.+|+.+..+|+|
T Consensus 1535 Iq~h~~~TgS~l~~~IL~~~~k~l~~fik--------------------------------------------------- 1563 (2142)
T KOG0399|consen 1535 IQEHVEYTGSQLAARILTNFEKYLPKFIK--------------------------------------------------- 1563 (2142)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHh---------------------------------------------------
Confidence 99999999999999999999999999988
Q ss_pred EeeeccccceeccccceecceEecCCCCCCCCCCCCCCCcceeeccccchhhhhhhcCCCCcchhcccccccccccccCC
Q psy12805 1068 LVSEVGVGVVASGVAKSIVSFEILPQPNPKRSQDNPWPQFPRIFKVDYGHEEVKVKHNHDPREFCILSSTLSSSLQFRDD 1147 (1429)
Q Consensus 1068 ~~~~~gv~~~a~g~ak~~~~~~~~~~~P~~r~~~~pwP~~p~~~~~~~a~eEa~~~~~~~~R~y~~~~~~~~~~~~~~~~ 1147 (1429)
T Consensus 1564 -------------------------------------------------------------------------------- 1563 (2142)
T KOG0399|consen 1564 -------------------------------------------------------------------------------- 1563 (2142)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccHHHHHHHHHHHHhhhhhhhh---hc-----ccCC----CCC----------CCcccccccccccCc--cceec
Q psy12805 1148 KTSVVFPYEYQRALKQILAEGVENKEK---AI-----EYTP----GFK----------LSNVKDIEDVMGADK--KKVDR 1203 (1429)
Q Consensus 1148 ~~~~v~p~~y~r~l~~~~~~~~~~~~~---~~-----~~~~----~~~----------~~~v~die~~i~~~~--k~~~~ 1203 (1429)
|||+||||+|+.+++++.+++.. ++ +.++ ..+ .+++.|.|+.+.+.. .+..+
T Consensus 1564 ----v~P~dyk~vl~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~e~~kk~~~~~~~~~~~~ee~~~d~~~~~k~~~ 1639 (2142)
T KOG0399|consen 1564 ----VFPRDYKRVLEAEKAERKKAKTGDKAQQSKALLSVDETKPQTIEEHNKKQKTALDAAGFDNEEDLGDAAALEKKSE 1639 (2142)
T ss_pred ----hCCchHhHHHHHhHHHHHhhccchhhhhhhhhcccCCCCcccccchhhhhhhhhhhhhcchhhhccchhhhhcCCc
Confidence 88999999999987776544421 11 1111 000 146677777765443 34556
Q ss_pred ccccccceEEEccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchH
Q psy12805 1204 SIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNW 1283 (1429)
Q Consensus 1204 ~~~k~~gf~kiAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~ 1283 (1429)
+.+|.+||++|.|.+..||.+.+|+.||+|+.+... ++.+..+.+|||+|+.|||+++.|||++++||+|++++|+++|
T Consensus 1640 ~ldk~rgf~~y~r~~~~yrdp~~r~ndw~e~~~~~~-~~~~~~qtarcmdcgtpfc~~~~gcpl~n~ip~~nelvfk~~w 1718 (2142)
T KOG0399|consen 1640 PLDKLRGFMKYNRRKEMYRDPKERLNDWKEVYDFEA-VSNLREQTARCMDCGTPFCQSDSGCPLGNIIPKFNELVFKNQW 1718 (2142)
T ss_pred chhhhcchhhhhhccccccChhhhcccHHHhhhhcc-chhhHHHhhHHhcCCCccccCCCCCccccccccHHHHHHHHHH
Confidence 779999999999999999999999999999999864 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-----------------------------------------------------------------
Q psy12805 1284 SEALNQLLQTNNFPA----------------------------------------------------------------- 1298 (1429)
Q Consensus 1284 ~~al~~~Le~~G~~~----------------------------------------------------------------- 1298 (1429)
.++++++|++|||++
T Consensus 1719 k~al~~ll~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpagl 1798 (2142)
T KOG0399|consen 1719 KEALEQLLETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGL 1798 (2142)
T ss_pred HHHHHHHHhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhh
Confidence 999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q psy12805 1299 -------------------------------------------------------------------------------- 1298 (1429)
Q Consensus 1299 -------------------------------------------------------------------------------- 1298 (1429)
T Consensus 1799 aaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1799 AAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDELKKENDAIVLAT 1878 (2142)
T ss_pred hHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHHHhhccCeEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy12805 1299 -------------------------------------------------------------------------------- 1298 (1429)
Q Consensus 1299 -------------------------------------------------------------------------------- 1298 (1429)
T Consensus 1879 gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp 1958 (2142)
T KOG0399|consen 1879 GSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLP 1958 (2142)
T ss_pred CCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecC
Confidence
Q ss_pred -------------------------------------------------------CcEEEEEEEeecCCCceEEEEeCCC
Q psy12805 1299 -------------------------------------------------------GIKTVKVEWTKDATGRWKMDEVPNS 1323 (1429)
Q Consensus 1299 -------------------------------------------------------gv~v~~Ve~~k~~~G~~~~v~~~gs 1323 (1429)
|+++++|+|++++.|+|+++++.++
T Consensus 1959 ~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~s 2038 (2142)
T KOG0399|consen 1959 QPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNS 2038 (2142)
T ss_pred CCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCc
Confidence 8899999999999999999999999
Q ss_pred eeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy12805 1324 EKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1324 e~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
++.++||+||+|+||.+|+..+.+++++++|++++|.+..+.+.|++++|||||||++++++++||+++||+||++++..
T Consensus 2039 ee~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred ceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999777899999999999999999999999999999999999996
Q ss_pred HhCCCCCCCCCCccccC
Q psy12805 1404 LMGTSTLPDVGGVITPY 1420 (1429)
Q Consensus 1404 L~g~~~~p~~g~v~~~~ 1420 (1429)
..+.+.+|++++++.+.
T Consensus 2119 ~~~~t~l~~~ggiv~~~ 2135 (2142)
T KOG0399|consen 2119 MGGTTDLPGDGGIVQRT 2135 (2142)
T ss_pred hCCcccCCCCCchhhHH
Confidence 67778899999987754
No 2
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=1.3e-260 Score=2443.69 Aligned_cols=974 Identities=48% Similarity=0.799 Sum_probs=925.8
Q ss_pred chHHHHHhhccCCCCCCCCCC--CCcccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHH-
Q psy12805 9 SEEEFRLLAEKCQLEVLGQHE--NTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADC- 85 (1429)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~- 85 (1429)
-+..|+|+|+||||||++||+ ||||+|+|||||||++||+|||+|||..|+|++|.++++|+||+++++|||++|||
T Consensus 210 ~~s~~al~HsRFSTNT~PsW~~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lDn~ 289 (1485)
T PRK11750 210 LESAICVFHQRFSTNTLPRWPLAQPFRYLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLDNM 289 (1485)
T ss_pred eeEEEEEEECcCCCCCCCCCCcCCCceeeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHHHH
Confidence 466789999999999999998 99999999999999999999999999999999997799999999999999999999
Q ss_pred -------------HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeC
Q psy12805 86 -------------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKD 152 (1429)
Q Consensus 86 -------------a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d 152 (1429)
|+||||||||++++.|+|++|+||+|||++||||||||+|+|+||++++|+||||||||+||.+|+|
T Consensus 290 lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g~~i~A~~DrnGlRPlr~~~~~d 369 (1485)
T PRK11750 290 LELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGRYAACNLDRNGLRPARYVITKD 369 (1485)
T ss_pred HHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeCCEEEEecCCCCCccceEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeccccccCCCCcccc----------------------------------------------------------
Q psy12805 153 NVMVMASEVGVYDTDPANVQLK---------------------------------------------------------- 174 (1429)
Q Consensus 153 ~~~~~~se~g~~~~~~~~v~~~---------------------------------------------------------- 174 (1429)
+.+|+|||+|++++++++|++|
T Consensus 370 ~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id~~~g~i~~~~eik~~~a~~~py~~wl~~~~~~L~~~~~~~~~~~~~ 449 (1485)
T PRK11750 370 KLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTGRILHSAEIDNDLKSRHPYKEWLEKNVRRLVPFEELPDEQVGS 449 (1485)
T ss_pred CEEEEEecceeeecccceeEEecccCCCeEEEEeCCCCeEeccHHHHHHHHhcCCHHHHHHhhccccccccccccccccc
Confidence 9999999999999999999985
Q ss_pred --------------------------CCC-------------chhhhHH----------------------h--------
Q psy12805 175 --------------------------IPM-------------DASLKCL----------------------I-------- 185 (1429)
Q Consensus 175 --------------------------~~m-------------d~pla~l----------------------i-------- 185 (1429)
.|| ||||||| |
T Consensus 450 ~~~~~~~l~~~q~afGyt~E~~~~~l~pMa~~g~EpigSMG~D~plAvLS~~~~~l~~yFkQ~FAQVTNPPID~iRE~~v 529 (1485)
T PRK11750 450 RELDDDTLKSYQKQFQYSFEELDQVIRVLAENGQEAVGSMGDDTPMAVLSSQPRSIYDYFRQQFAQVTNPPIDPLREAHV 529 (1485)
T ss_pred cCCChHHHHHHHHHhCCCHHHHHHHHHHHHhcCCcCcccCCCCcchhhhcCCCccHHHHhhhcceeccCCCCchhhhhce
Confidence 233 9999999 0
Q ss_pred --------------------------------------------------------------------------------
Q psy12805 186 -------------------------------------------------------------------------------- 185 (1429)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (1429)
T Consensus 530 mSl~~~lG~~~n~l~~~~~~~~~l~l~~PiL~~~~~~~l~~~~~~~~~~~~l~~~f~~~~~~L~~aL~~L~~~A~~Av~~ 609 (1485)
T PRK11750 530 MSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTLDEEHYRADTLDLNYDPEETGLEAAIKRLCDEAEQAVRD 609 (1485)
T ss_pred eeeeeeeCCCcCcCCCCcccCCeEEeCCceeCHHHHHHHHhccccCCceEEEEEEEeCChHHHHHHHHHHHHHHHHHHHC
Confidence
Q ss_pred --------------------------hhc---------------------cchhHHHHHhhccccccchHhHHHHHHHHH
Q psy12805 186 --------------------------LVH---------------------REVHHMCVLLGYGADAICPYLVFEMAKSLR 218 (1429)
Q Consensus 186 --------------------------~vh---------------------r~~h~~~~l~g~ga~av~pyl~~~~~~~~~ 218 (1429)
+|| ||+|||||||||||+|||||||||++.+|.
T Consensus 610 G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA~eti~~l~ 689 (1485)
T PRK11750 610 GTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGDLV 689 (1485)
T ss_pred CCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 666 999999999999999999999999999987
Q ss_pred hcC-----------CHHHHHhhhHHhHhhcccccccccCCCccceeecCCCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q psy12805 219 AEG-----------NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYD 287 (1429)
Q Consensus 219 ~~~-----------~~~~a~~~g~~kvmskmgis~~~sy~gaq~fe~~gl~~~~~~~~f~gt~s~~~g~~~~~~~~~~~~ 287 (1429)
.+| ||++|++|||+|||||||||||+||+||||||||||++||||+||+||+|||||++|++|++|++.
T Consensus 690 ~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFEaiGL~~~vv~~~F~gt~sri~Gi~~~~i~~e~~~ 769 (1485)
T PRK11750 690 DTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDDVVDLCFKGVVSRIGGASFEDFEQDQKN 769 (1485)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccccccCCCHHHHHHhcCCCCccCCCccHHHHHHHHHH
Confidence 665 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccccCCCcceeeccCCCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHhhcccCccccccccccccCCC
Q psy12805 288 RHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDK 367 (1429)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~g~~~~r~~ge~h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 367 (1429)
||+.||+.. ..|+++|+||||++||+|.|+|++|+.||+++++++|+.|++|+.+.+++ ++++||+||.|+....
T Consensus 770 rh~~a~~~~----~~L~~~g~~~~r~~ge~H~~~p~~i~~lq~a~~~g~~~~y~~y~~~~~~~-~~~~lr~ll~~~~~~~ 844 (1485)
T PRK11750 770 LSKRAWLAR----KPIDQGGLLKYVHGGEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNER-PVATLRDLLALKPADN 844 (1485)
T ss_pred HHHHhcCCc----cCCCCCCeeeeccCCcccccCHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCCHHHHhcccCCCC
Confidence 999999532 23899999999999999999999999999999999999999999999876 5679999999997677
Q ss_pred CCCCCCCCcccccccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecccCCCCC
Q psy12805 368 PVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGV 447 (1429)
Q Consensus 368 ~i~~~~v~~~~~i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv 447 (1429)
|+|+++|||+.+|.+||+|+||||||+|+|||++||+|||++|+++||||||++|+++. ....++|+|++||||||
T Consensus 845 ~~p~~eve~v~~I~~rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~----~~~~~~i~QiaSGrFGv 920 (1485)
T PRK11750 845 PIPLDEVEPAEELFKRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYG----TEKVSKIKQVASGRFGV 920 (1485)
T ss_pred CCCccccccHHHHhcccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHh----cccCCeEEEccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999972 44578999999999999
Q ss_pred ChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEE
Q psy12805 448 TSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIS 527 (1429)
Q Consensus 448 ~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~ 527 (1429)
+++||.++++||||++||||||+||+||+.||+++||++|+++||++||||||||||||||||+|+|++||+.+|++||+
T Consensus 921 ~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~ 1000 (1485)
T PRK11750 921 TPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVS 1000 (1485)
T ss_pred CHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHH
Q psy12805 528 VKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGF 607 (1429)
Q Consensus 528 VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~ 607 (1429)
|||+++.+++++|.+++|||||+|+|||++|||||+|+++++|+|+||+++|+++||+|+++|||++|+|++|||++|+.
T Consensus 1001 VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~ 1080 (1485)
T PRK11750 1001 VKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGL 1080 (1485)
T ss_pred EEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12805 608 DVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK-KFAGKPEHVINYLFMLAEEVRTHMAKLGIR 686 (1429)
Q Consensus 608 Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~-~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~ 686 (1429)
||+||++||||+|++||++|+|+||+|||+||+|+|||||+||||.||+ .+.+.+++|+|||..+.+||+++|+.||++
T Consensus 1081 Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~ 1160 (1485)
T PRK11750 1081 DVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVR 1160 (1485)
T ss_pred HHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999997 567789999999999999999999999999
Q ss_pred ChhhhcCCCccccccCCCCCccccCCChhHHHHhhhccCCCcccccCcccccCCcccc-ccHHHHHHHHhhhcCCCCcEE
Q psy12805 687 KFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKR-LDNTLIQECEPVLSGKVPRID 765 (1429)
Q Consensus 687 sl~ElvGrsdll~~~~~~~~~k~~gldl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~i~~~~~~~~~~~~~~~ 765 (1429)
+++|+|||+|||.+.....+ |++.|||+.||.++.. +..........++|.++.. ||.++++.++++++++. ++.
T Consensus 1161 s~~elvGr~dlL~~~~~~~~-k~~~lDls~lL~~~~~--~~~~~~~~~~~~~~~~~~~~ld~~ll~~~~~ai~~~~-~~~ 1236 (1485)
T PRK11750 1161 SLEDLIGRTDLLEELEGETA-KQQKLDLSPLLETAEP--PAGKALYCTEERNPPFDKGLLNEQMLQQAKPAIEAKQ-GGE 1236 (1485)
T ss_pred CHHHhcCchhccccccCchh-hhcCCChhHHhCCCCC--CCCcccccccccccccccchhHHHHHHHHHHHHHcCC-cEE
Confidence 99999999999988754444 8999999999976531 1111122233467878777 99999999999999875 888
Q ss_pred EEEEEeecCCcccccchhhhccccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccce
Q psy12805 766 LEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVH 845 (1429)
Q Consensus 766 ~~~~i~n~~r~~g~~l~~~i~~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~ 845 (1429)
+++.|.|+||++||+||++|+++||++|||+++|+|+++|+|||||||||.+|++
T Consensus 1237 ~~~~i~N~dR~vGt~ls~~i~~~yg~~gl~~~~i~i~~~G~aGqs~Gaf~~~G~~------------------------- 1291 (1485)
T PRK11750 1237 FWFDIRNTDRSVGARLSGEIARRHGNQGMADAPIKLRFTGTAGQSFGVWNAGGLE------------------------- 1291 (1485)
T ss_pred EEEeEEeccccHHHHHHHHHHHHhCcCCCCCCeEEEEEEccCccccccccCCCCE-------------------------
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccCCceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcccCcccc
Q psy12805 846 VTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGC 925 (1429)
Q Consensus 846 i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G~g~~~~ 925 (1429)
|+|+|+||||+||||+||+|+|+|+.++.|.+.+|.++||+|+||||||++||+|+||+|||+|||||++||||+|||+|
T Consensus 1292 i~v~GdAndyvGkgmsGG~I~V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~i~G~AG~R~gvr~sG~~~VVeG~Gd~~~ 1371 (1485)
T PRK11750 1292 LYLEGDANDYVGKGMAGGKIVIRPPVGSAFRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGC 1371 (1485)
T ss_pred EEEEecccccccccccCCEEEEECCCccccccccccccccceeeccccCEEEEEcccccceeecCCCCeEEEeCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeeecCCh-hhHHHHHHHHHHHHHhhccHHHHHHh
Q psy12805 926 EYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELP-EDLDYVKSLLVEFHEKTESEIAKNLL 1004 (1429)
Q Consensus 926 eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~-~~~~~l~~~~~~~~~~t~s~~a~~~l 1004 (1429)
||||||+|||||++|+|||+||+||++||+|++++|..+||.++|++.+++++ ++.+.||.||++|.++|+|+.|+.||
T Consensus 1372 EyMtgG~vvVlG~~G~~~gagM~gG~~yv~~~~~~~~~~~n~~~V~~~~~~~~~~~~~~l~~li~~h~~~T~S~~a~~iL 1451 (1485)
T PRK11750 1372 EYMTGGIVCVLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVEETGSEWGEEIL 1451 (1485)
T ss_pred hhhcCCEEEEeCCCCcchhcCCCCCEEEEECCccchhhhcCHhHeeecccccChHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877432 33444999999999999999999999
Q ss_pred hcCCCCCCCeEEEecc
Q psy12805 1005 QTWPAPAKQFVKVTKD 1020 (1429)
Q Consensus 1005 ~~~~~~~~~f~kV~p~ 1020 (1429)
+||+.+..+|+||+|.
T Consensus 1452 ~~w~~~~~~F~kv~P~ 1467 (1485)
T PRK11750 1452 ANFDDYLRKFWLVKPK 1467 (1485)
T ss_pred HhHHHHhCcEEEEcCC
Confidence 9999999999999998
No 3
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-122 Score=1085.83 Aligned_cols=470 Identities=60% Similarity=0.937 Sum_probs=457.4
Q ss_pred CHHHHHhhhHHhHhhcccccccccCCCccceeecCCCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhcccccccccc
Q psy12805 222 NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSERTADML 301 (1429)
Q Consensus 222 ~~~~a~~~g~~kvmskmgis~~~sy~gaq~fe~~gl~~~~~~~~f~gt~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1429)
||++++++|++||||||||||++||+|||+||++||+.++++.||+||.+|++|++++++++|+..+|+.+|..+..
T Consensus 9 ~~~~~~~~~~~k~~skmgi~~~~sy~~a~~~~~~gl~~~~v~~~f~g~~~r~~~~~~~~~~~~~~~~~~~a~~~~~~--- 85 (485)
T COG0069 9 NYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIGGISLDEIAQEISRRHRTAGAVKAK--- 85 (485)
T ss_pred HHHHHHHhhhHHHHHHhhccchhhccCceeeccccCCcHHHheecCCCcccccccchHHHhHHHHHHHHhhcccccc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ccCCCcceeeccCCCCCCCCHHHHHHHHHHHh-cCChHHHHHHHHHhhcccCccccccccccccCCC-CCCCCCCCcccc
Q psy12805 302 VLRNPGYYHWRAGGEKHINDPVSIANLQEAAS-NNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDK-PVDISEVEPAAE 379 (1429)
Q Consensus 302 ~l~~~g~~~~r~~ge~h~~~p~~~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~-~i~~~~v~~~~~ 379 (1429)
.++..|+|+||+.||+|.|+|.++..||.+++ .++|+.|++|+..++++. ..++|++++|+...+ ||++++|+|..+
T Consensus 86 ~~~~~G~~~~r~~ge~h~~~p~~~~~~q~a~~~~~~~~~~~~~~~~i~~~~-~~~~r~~~d~~~~~~~~i~~~~vep~~~ 164 (485)
T COG0069 86 ELDVGGFGTERDGGEPHFYDPDTLFALQVATRSEGGYREYKEYSVLIGTRA-STTLRDLLDFIADGSKPIPIEEVEPVLE 164 (485)
T ss_pred cccccCcceecccCCCccCCHHHHhHhhhcccccCchHHHHHHHHHhhccc-chhhhhhhhhccccccccccccccccce
Confidence 58889999999999999999999999999999 889999999999998865 556999999987665 999999999999
Q ss_pred cccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecccCCCCCChhhhccccchh
Q psy12805 380 IVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQ 459 (1429)
Q Consensus 380 i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv~~~~L~~a~~ie 459 (1429)
|.+||.+++|||||+|+|+|++||+|||++|+++||||||++|++| +..++.|+|++||||||+++||.++++||
T Consensus 165 i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~-----~~~~s~I~QvaSGRFGV~~~yL~~a~~ie 239 (485)
T COG0069 165 LKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERY-----EDGRSAIKQVASGRFGVTPEYLANADAIE 239 (485)
T ss_pred eeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHh-----ccccceEEEeccccCccCHHHhCccceEE
Confidence 9999999999999999999999999999999999999999999997 56789999999999999999999999999
Q ss_pred hhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHH
Q psy12805 460 IKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV 539 (1429)
Q Consensus 460 Ik~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~v 539 (1429)
||++||||||+|||||+.||+++||++||++||+++|||+|||||||||||+|+|++||++||.++|+|||+++.+++++
T Consensus 240 IKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~i 319 (485)
T COG0069 240 IKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTI 319 (485)
T ss_pred EEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchh
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 619 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAda 619 (1429)
|.+++||+||+|+|||++|||||||+++++|+|+||+++|+++||+|+++|||++|.|++|||++|+.||+||++||||+
T Consensus 320 aagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~ 399 (485)
T COG0069 320 AAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADA 399 (485)
T ss_pred HhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHhccccccccccCCCCccceecCHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcc
Q psy12805 620 IGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK--FAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDL 697 (1429)
Q Consensus 620 vg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~--~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdl 697 (1429)
|+|||++|+++||+|||+||+|+||+||+||||.||++ |.+.+++|+|||.++++|++++|+.+|+++++||+|++|+
T Consensus 400 v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~~d~ 479 (485)
T COG0069 400 VGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGRTDL 479 (485)
T ss_pred hhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcchhh
Confidence 99999999999999999999999999999999999999 7889999999999999999999999999999999999998
Q ss_pred ccc
Q psy12805 698 LKP 700 (1429)
Q Consensus 698 l~~ 700 (1429)
+..
T Consensus 480 L~~ 482 (485)
T COG0069 480 LRT 482 (485)
T ss_pred hhc
Confidence 864
No 4
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=8.1e-88 Score=780.23 Aligned_cols=364 Identities=51% Similarity=0.760 Sum_probs=285.1
Q ss_pred CCCCHHHHHHHHHHHhcCChHHHHHHHHHhhcccCccccccccccccCCCC-CCCCCCCcccccccceeeCCCCCccchH
Q psy12805 318 HINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKP-VDISEVEPAAEIVKRFATGAMSFGSISI 396 (1429)
Q Consensus 318 h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~-i~~~~v~~~~~i~~pf~i~aMS~GslS~ 396 (1429)
|.|+|++++.||+|++.++|..|++|++..++...++++|++|+|+.++.+ |+.+++++..++..||+|++|||||+|+
T Consensus 1 h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~~i~~~~~~~p~~l~~p~~is~MS~GaLS~ 80 (368)
T PF01645_consen 1 HAYNPEVIKLLQKAVRVNSYESYKEYRERVNEREFPSALRDLLEFKYDEAPSIPGEKVEKPLELSIPFMISAMSYGALSE 80 (368)
T ss_dssp -SS-HHHHHHHHHHHHCT-HHHHHHHHHHHHTS--S-SGGGGEEE--SS-----GGGS--HHHHHTTEEEEEB-CTTC-H
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccccCcccccccCCCCcCchhhcCChhhheeeeecccCChhhcCH
Confidence 899999999999999999999999999999987678999999999877665 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccc-eeecccCCCCCChhhhccccchhhhcccCCCCCCCCCcc
Q psy12805 397 EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA-IKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELP 475 (1429)
Q Consensus 397 ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~-I~Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lp 475 (1429)
++|++||+||+++|+.+||||||++|+++. ..... |+|++||||||++++|.++++||||++||||||+||+||
T Consensus 81 ~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~-----~~~~~~I~Q~~sg~fGv~~~~l~~a~~iEIKigQGAKpG~GG~Lp 155 (368)
T PF01645_consen 81 EAKEALAKGANMAGTASNTGEGGELPEERK-----AAKDLRIKQIASGRFGVRPEYLKQADMIEIKIGQGAKPGEGGHLP 155 (368)
T ss_dssp HHHHHHHHHHHHCT-EEEETTT---GGGCS-----B-TTSSEEEE-TT-TT--HHHHCC-SEEEEE---TTSTTT--EE-
T ss_pred HHHHHHHHHHHHhCceEecCCCCCCHHHhc-----ccCCceEEEcCCCCCCCCHHHhcCCCeEEEEEecCccccCcceec
Confidence 999999999999999999999999999973 33455 999999999999999999999999999999999999999
Q ss_pred cccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEec
Q psy12805 476 GYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISG 555 (1429)
Q Consensus 476 g~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG 555 (1429)
+.||+++||++|+++||++++||++||||||+|||.++|++||+.+|.+||+||+++..++++++..++++|+|+|+|||
T Consensus 156 ~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG 235 (368)
T PF01645_consen 156 GEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDG 235 (368)
T ss_dssp GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-
T ss_pred hhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccc
Q psy12805 556 HDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMM 635 (1429)
Q Consensus 556 ~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~ 635 (1429)
.+||||+||+++++++|+||+++|.++|++|+++|+|++|+|++||||+|+.||+||++||||+|++||++|+|+||+||
T Consensus 236 ~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~ 315 (368)
T PF01645_consen 236 AEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQC 315 (368)
T ss_dssp TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S-
T ss_pred CCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccceecCHHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy12805 636 RKCHLNTCPVGIATQDPELRKKFA--GKPEHVINYLFMLAEEVRTHMAKLGIR 686 (1429)
Q Consensus 636 r~c~~~~cP~giatqd~~lr~~~~--g~~e~v~ny~~~l~~eLr~iMa~mGi~ 686 (1429)
|+||+|+||+||+||||+|+++++ .++++|.||++++.+||+++|+.||++
T Consensus 316 ~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 316 RKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp --CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred hcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999997774 678999999999999999999999975
No 5
>COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-66 Score=577.01 Aligned_cols=278 Identities=48% Similarity=0.742 Sum_probs=258.5
Q ss_pred cCCChhHHHHhhhccCCCcccccCcccccCCccccccHHHHHHHHhhhcCCCCcEEEEEEEeecCCcccccchhhhcccc
Q psy12805 710 KMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKT 789 (1429)
Q Consensus 710 ~gldl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~n~~r~~g~~l~~~i~~~~ 789 (1429)
+++||+.++. +.. +. ..+..+|+|..+..||.+++.. ++++.+.. .+...+++.|++|+++++++++++++|
T Consensus 2 ~~ldls~~l~-~~~--~~---~~~~~~~~~~~~~~lD~~~~~~-~~~~~n~~-~~~~~~~i~N~~r~~g~~~~g~i~~~~ 73 (301)
T COG0070 2 KGLDLSPLLY-PED--PN---TYCEKRQDHGLEPVLDAKLLED-KPALENGE-IVKILAEIRNVDRSVGANLSGEIAKGY 73 (301)
T ss_pred CccccccccC-ccc--cc---ccccccccccccccccchhccc-chhhhccC-ceEEEeeccceEEeeecccCCceeeee
Confidence 5789998887 432 11 3445678888999999999877 77777655 777888999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeC
Q psy12805 790 KEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYP 869 (1429)
Q Consensus 790 g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p 869 (1429)
|..|||+++|+|+++|+||||||||+.+|++ |+|+||||||||||||||+|||+|
T Consensus 74 G~~gl~~~~i~i~~~GsaGqsfGaf~~~G~~-------------------------l~l~GdAnDyvGkgmsgG~IVV~~ 128 (301)
T COG0070 74 GLQGLPEDTVEINFNGSAGQSFGAFNAKGPT-------------------------LELNGDANDYVGKGMSGGKIVVRG 128 (301)
T ss_pred CcCCCCCCcEEEEEEeccchhhhhhhcCCCE-------------------------EEEEeccCCcccCCCCCcEEEEEC
Confidence 9999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcccCccccccccCceEEEeCCCCCcccccccc
Q psy12805 870 PKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSG 949 (1429)
Q Consensus 870 ~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~g 949 (1429)
| ++|.++.|+|+||+|+||||||++||+|+||+||||||||+++||||+|||+|||||||+|||||++|+|||+||||
T Consensus 129 ~--~~~~~~~~~i~Gn~~lyGatgG~~fi~G~AGeRfaVrnsG~~~VVeG~GD~~cEYMtGG~VvVLG~~G~nfgaGMsG 206 (301)
T COG0070 129 P--ARFKAEANIIVGNTVLYGATGGELFIRGNAGERFGVRNSGATAVVEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSG 206 (301)
T ss_pred C--CcccccCCceecceEEEeccCcEEEEecCceeeEEEEccCceEEEeccCcceecccCCCEEEEeCCcchhhcCcccc
Confidence 9 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCC-chhcccCccceEeeecCChhhHHHHHHHHHHHHHhhccHHHHHHhhcCCCCCCCeEEEecchh
Q psy12805 950 GIAYVLDVDG-SFAKKCNMEMVELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKDIA 1022 (1429)
Q Consensus 950 G~~yv~~~~~-~f~~~~n~~~v~~~~~~~~~~~~~l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f~kV~p~ia 1022 (1429)
|+|||+|+++ .|..++|.++|+++.+..+++++.|++||++|+++|+|+.|+.||++|+....+|+||+|...
T Consensus 207 G~aYV~~~~~~~f~~~~n~~~ve~e~~~~ed~~~~L~~li~~h~~~t~s~~a~~iL~~w~~~~~~f~kv~P~~~ 280 (301)
T COG0070 207 GVAYVRGEVGSDFPLGVNAELVELESLTEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKVKPREY 280 (301)
T ss_pred eEEEEecCccchhhcCccceEEEeccCCcHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHHhhhhhEEEEcchhh
Confidence 9999999999 899999999999988887666799999999999999999999999999999999999999743
No 6
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=5.2e-64 Score=594.07 Aligned_cols=359 Identities=52% Similarity=0.786 Sum_probs=326.2
Q ss_pred CChHHHHHHHHHhhccc-CccccccccccccCCCCCCCCC-------------CCcccccccceeeCCCCCccchHHHHH
Q psy12805 335 NNKNAYDRFRESNMESV-KYSTLRGQLDFVTHDKPVDISE-------------VEPAAEIVKRFATGAMSFGSISIEAHT 400 (1429)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~~~~lr~~l~~~~~~~~i~~~~-------------v~~~~~i~~pf~i~aMS~GslS~ea~~ 400 (1429)
+.+..|..|.+..+... ...+.|+++.|.....+.++.+ ++....+..||++++|||||+|++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~ 96 (392)
T cd02808 17 NRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKE 96 (392)
T ss_pred CcHHHHHHHHHhhcCCCCCCCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHHH
Confidence 45677888888765532 3568999999975433333332 344456889999999999999999999
Q ss_pred HHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecccCCCCCChhhhccccchhhhcccCCCCCCCCCcccccch
Q psy12805 401 TLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT 480 (1429)
Q Consensus 401 aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~ 480 (1429)
+||.||+++|+..|+|||+++|+++ ....+.|+|+++++|||+.+++.++++||||++||||||.||+||+.||+
T Consensus 97 aLa~aa~~aG~~~~~Gegg~~~~~~-----~~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~ 171 (392)
T cd02808 97 ALAIGAALAGTASNTGEGGELPEER-----EGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVT 171 (392)
T ss_pred HHHHHHHhcCCceeecCCCCCHHHH-----hhhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCccccccCC
Confidence 9999999999999999999999996 34567899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCC
Q psy12805 481 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGT 560 (1429)
Q Consensus 481 ~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGT 560 (1429)
.+||++||++++++++|||+||||++++++.++|++||+.++++||+||+++.....+++..+.++|+|+|+|||++|||
T Consensus 172 ~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggt 251 (392)
T cd02808 172 EEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGT 251 (392)
T ss_pred HHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999998669999999987666777777777789999999999999
Q ss_pred CccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhcccccccccc
Q psy12805 561 GASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHL 640 (1429)
Q Consensus 561 gaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~ 640 (1429)
|++|+...++||+|++.+|.++++++.+.++|.+++|+++|||+|+.|++||++||||+|++||++|++++|+|+++||+
T Consensus 252 g~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~ 331 (392)
T cd02808 252 GAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHT 331 (392)
T ss_pred CCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceecCHHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcccc
Q psy12805 641 NTCPVGIATQDPELRKKFA--GKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLK 699 (1429)
Q Consensus 641 ~~cP~giatqd~~lr~~~~--g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~ 699 (1429)
|+||+||+||+|.+++++. .+.++|.||++.+.+||+++|+.+|+++++|+ +++|++.
T Consensus 332 ~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l-~~~~l~~ 391 (392)
T cd02808 332 NTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELL-GRSDLLA 391 (392)
T ss_pred CCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHC-CHHHhhc
Confidence 9999999999999987764 57899999999999999999999999999986 8888754
No 7
>cd00982 gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS.
Probab=100.00 E-value=1.8e-63 Score=547.30 Aligned_cols=250 Identities=62% Similarity=0.966 Sum_probs=242.4
Q ss_pred ccHHHHHHHHhhh-cCCCCcEEEEEEEeecCCcccccchhhhccccccCCCCCCcEEEEEeCCccchhhhcccCCeeEee
Q psy12805 745 LDNTLIQECEPVL-SGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTL 823 (1429)
Q Consensus 745 l~~~~i~~~~~~~-~~~~~~~~~~~~i~n~~r~~g~~l~~~i~~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v 823 (1429)
||.++|+++++++ +++ .++.+++.|.|+||++||+||++|+++||+.+||.++|+|+++|+|||||||||++|++
T Consensus 1 ld~~~i~~~~~~~~~~~-~~~~~~~~i~N~dRsvGt~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~--- 76 (251)
T cd00982 1 LDDKLIADAEPALIENG-EPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFEGSAGQSFGAFLAKGVT--- 76 (251)
T ss_pred ChHHHHHHHHHHHHhcC-CeEEEEeeeEecccchhhHHHHHHHHHhcccCCCCCcEEEEEEcCCCceeeeecCCCCE---
Confidence 5788999999999 655 48999999999999999999999999999999999999999999999999999889988
Q ss_pred cCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCCccceeccccccccccCceeEecccC
Q psy12805 824 EGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAA 903 (1429)
Q Consensus 824 ~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag 903 (1429)
|+|+|+||||+||+|+||+|+|+|+.++.|..++|.++||+|+||||||++||+|+||
T Consensus 77 ----------------------i~v~G~A~dyvGk~m~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~AG 134 (251)
T cd00982 77 ----------------------LELEGDANDYVGKGLSGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRAG 134 (251)
T ss_pred ----------------------EEEEecccccccccccCCEEEEECCCcccccccccceehhhhhhccCCCEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeeecCChhhHHH
Q psy12805 904 ERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDY 983 (1429)
Q Consensus 904 ~Rfgvr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~~~~~~ 983 (1429)
+|||+||||+++||||+|||+|||||||+|||||++|+|||+||+||+|||+|++++|.+++|.++|++.++++++|+++
T Consensus 135 ~R~gvr~sG~~iVV~G~Gd~~~EyMtGG~ivVlG~~G~~~gaGM~gG~iyv~~~~~~~~~~~n~~~V~~~~l~~~~d~~~ 214 (251)
T cd00982 135 ERFAVRNSGATAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQ 214 (251)
T ss_pred ceeeeccCCCEEEEEecccceeccccCCEEEEECCCCcCcccCCCCCEEEEECCcCChhhhcCHhhEeeccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876789999
Q ss_pred HHHHHHHHHHhhccHHHHHHhhcCCCCCCCeEEEecc
Q psy12805 984 VKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKD 1020 (1429)
Q Consensus 984 l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f~kV~p~ 1020 (1429)
|++||++|+++|+|+.|+.||++|+.+..+|+||+|.
T Consensus 215 l~~ll~~h~~~t~s~~a~~iL~~~~~~~~~F~~v~P~ 251 (251)
T cd00982 215 LKELIEEHVEYTGSEKAKEILANWEAYLKKFVKVIPR 251 (251)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhHHHHhCcEEEEEeC
Confidence 9999999999999999999999999999999999994
No 8
>KOG0399|consensus
Probab=100.00 E-value=4.6e-55 Score=527.18 Aligned_cols=409 Identities=31% Similarity=0.444 Sum_probs=330.2
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEE-cCCcccHHHHHHHHHhcc
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-DGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Lia-sGGIrtg~Dv~kAlaLGA 617 (1429)
.|..+++.|-.+++||++.-+ .++..||.++|+..+||+|++++||.+|.|++ +|.-|.-+|+...+..||
T Consensus 683 ~A~eAv~~G~qiLVLSDR~~~--------~eRv~i~sllAvgaVHhhLIqn~lR~~valV~et~e~revHhfc~LlGyGa 754 (2142)
T KOG0399|consen 683 EADEAVRDGYQILVLSDRNDS--------AERVPIPSLLAVGAVHHHLIQNKLRMQVALVVETGEAREVHHFCVLLGYGA 754 (2142)
T ss_pred HHHHHHhccceEEEEecccCC--------cccCChHHHHHHhHHHHHHHHhhhhceEEEEEecCcceeeeeeeeeeccCc
Confidence 566688889999999999744 45889999999999999999999999999995 577788899988899999
Q ss_pred hhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC----CcHHHHHHHHHHHHHHHHHHHHhcCCCChh----
Q psy12805 618 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA----GKPEHVINYLFMLAEEVRTHMAKLGIRKFA---- 689 (1429)
Q Consensus 618 davg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~----g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~---- 689 (1429)
|+| .||+|+... .|--..+ .+..+.. ...+.+.||.+++..+|.++|++|||++++
T Consensus 755 dai----cPyLa~Et~-~RL~~~~-----------~~~~~nn~~t~t~eq~~knY~kavn~GilKVmsKMGIStl~SYkg 818 (2142)
T KOG0399|consen 755 DAI----CPYLAMETL-WRLSNKG-----------LLDPRNNGPTVTEEQAQKNYRKAVNAGILKVMSKMGISTLASYKG 818 (2142)
T ss_pred ccc----chHHHHHHH-HHHHhcc-----------ccccccCCCcccHHHHHHHHHHHhhhhHHHHHHHhChHHHhhccc
Confidence 988 699988521 1111111 1111111 135778999999999999999999999998
Q ss_pred ----hhcCCC-ccccccCCCCCccccCCChhHHHHhhhccC----CC--------cccccCcccccCCccccc-cHHHHH
Q psy12805 690 ----DLVGRT-DLLKPREVGANPKAKMLNFAFLLKNALHMR----PG--------VNIRAGSETQDHQLEKRL-DNTLIQ 751 (1429)
Q Consensus 690 ----ElvGrs-dll~~~~~~~~~k~~gldl~~l~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~l-~~~~i~ 751 (1429)
|++|+. +++..++.++.++++|+.|+.|..++...+ |. .....+.+.++.+.|+|. +|..|+
T Consensus 819 AQIFE~lGL~neVVd~cF~gt~Sri~G~Tfe~LA~dal~~h~rafpt~~~~~~s~~L~n~G~~h~R~gGe~H~N~P~aia 898 (2142)
T KOG0399|consen 819 AQIFEALGLDNEVVDKCFTGTVSRIGGATFEELARDALSLHERAFPTDQTARFSKTLPNSGFYHFRDGGEKHVNEPLAIA 898 (2142)
T ss_pred hhhhhhhccchHHHHHHhcCChhhhccccHHHHHHHHHHHHHhcCCCcccccccccCCCCcceEecCCccccCCCHHHHH
Confidence 788998 788889999999999999999988765432 11 112345677888999998 489999
Q ss_pred HHHhhhcCCCCcEEEEE-EEeecCCcccccchhhhccccc-cCCCCCCcEE-----EEEeCCccchhhhcccCCeeEeec
Q psy12805 752 ECEPVLSGKVPRIDLEY-TINNECRAFTATLSYHISIKTK-EEGLPENSIN-----LKLTGSAGQSFCAFLVRGVHVTLE 824 (1429)
Q Consensus 752 ~~~~~~~~~~~~~~~~~-~i~n~~r~~g~~l~~~i~~~~g-~~glp~~~i~-----i~~~g~aG~s~Ga~~~~G~~i~v~ 824 (1429)
.+|++.+.+....+.+| .-.|..|.. .+||+++.++|. ...+|.+.++ ++.+-+.+||||+.
T Consensus 899 ~Lq~AvR~kne~ay~~Ys~~~~~~~r~-~tlRglLefk~s~~~~IPl~~VEPaseIv~RFcTGaMS~GsI---------- 967 (2142)
T KOG0399|consen 899 KLQDAVRNKNEAAYAEYSKQHNEARRW-CTLRGLLEFKFSDSVPIPLEEVEPASEIVKRFCTGAMSYGSI---------- 967 (2142)
T ss_pred HHHHHHHhcchhHHHHHHHHHHhhCcc-chhhhhheeccccCCcCchhhcCcHHHHHHHHhccccccccc----------
Confidence 99999987765556666 334555534 459999999975 4688887665 46677899999999
Q ss_pred CCcccccCccchhhhhcccceEEEecccccccccccC--CceEEEeCCCCCCCCCCccceeccccccccccCceeEeccc
Q psy12805 825 GDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLS--GGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIA 902 (1429)
Q Consensus 825 g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgms--GG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~a 902 (1429)
++|.+..+++ ++|...||+++ ||+.- .|+.+..++. .--+..|+|+|
T Consensus 968 -------S~EtH~tlAI---------AMNRlGgKSNtGEGGEdp------~R~~~l~d~~---------d~~rSAIKQVA 1016 (2142)
T KOG0399|consen 968 -------SMETHTTLAI---------AMNRLGGKSNTGEGGEDP------ERSKPLADGV---------DTMRSAIKQVA 1016 (2142)
T ss_pred -------chhhHHHHHH---------HHHhhcCcCCCCCCCCCh------hhcccccccc---------hHHHHHHHHHh
Confidence 6677777766 99999999999 79963 3444444432 11234689999
Q ss_pred CcceeeeecCceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeeecCChhhHH
Q psy12805 903 AERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLD 982 (1429)
Q Consensus 903 g~Rfgvr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~~~~~ 982 (1429)
++||||. . -|+ .|+++++|+
T Consensus 1017 SgRFGVT-----s----------~yL------------------------------------~nADeLqIK--------- 1036 (2142)
T KOG0399|consen 1017 SGRFGVT-----S----------YYL------------------------------------SNADELQIK--------- 1036 (2142)
T ss_pred ccccccc-----h----------hhc------------------------------------cCchhhhhH---------
Confidence 9999996 2 344 388888774
Q ss_pred HHHHHHHHHHHhhccHHHHHHhhcCCCCCCCe--EEEecchhccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHhhhCC
Q psy12805 983 YVKSLLVEFHEKTESEIAKNLLQTWPAPAKQF--VKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANP 1060 (1429)
Q Consensus 983 ~l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f--~kV~p~ia~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1060 (1429)
+||+ +||++++++ .||..+||++||++|||+||||||||||||||||+||||||||+||
T Consensus 1037 ----------------mAQG---AKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~aNP 1097 (2142)
T KOG0399|consen 1037 ----------------MAQG---AKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANP 1097 (2142)
T ss_pred ----------------HhcC---CCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHHHHhhccCC
Confidence 9999 999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeeeccccceeccccceecceEecC
Q psy12805 1061 NARISVKLVSEVGVGVVASGVAKSIVSFEILP 1092 (1429)
Q Consensus 1061 ~~~~~~~~~~~~gv~~~a~g~ak~~~~~~~~~ 1092 (1429)
+|+||||||||+|||+||+||||+.+|.+...
T Consensus 1098 ~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vS 1129 (2142)
T KOG0399|consen 1098 RARVSVKLVSEAGVGIVASGVAKGNADHILVS 1129 (2142)
T ss_pred CceeEEEEEecccceeeeeccccccCceEEEe
Confidence 99999999999999999999999999987765
No 9
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=3.4e-53 Score=496.67 Aligned_cols=168 Identities=48% Similarity=0.848 Sum_probs=163.1
Q ss_pred CcchHHHHHhhccCCCCCCCCCC--CCcccccccccccchHhHHHHHHhhhcccCCCCCCC-ccceeeccCCCCCchHHH
Q psy12805 7 SQSEEEFRLLAEKCQLEVLGQHE--NTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPD-IKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~-~~~~~p~~~~~~sds~~~ 83 (1429)
..-+..|+++|.||||||..||+ ||||+|+|||||||++||+|||++||+.|+|++|++ +++++||+++++|||++|
T Consensus 197 ~~~~s~~al~H~RfSTNT~p~W~~AqPfr~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~l 276 (413)
T cd00713 197 PRFESAFALVHSRFSTNTFPSWPLAQPFRYLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASL 276 (413)
T ss_pred ccceEEEEEEEEecCCCCCCCcccCCcceeEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHH
Confidence 34567799999999999999999 999999999999999999999999999999999997 999999999999999999
Q ss_pred HH--------------HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEE
Q psy12805 84 DC--------------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYV 149 (1429)
Q Consensus 84 d~--------------a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~ 149 (1429)
|| |+||||||||++++.|+|++|+||+||+++||||||||+++|+||+.++|++|||||||+||.+
T Consensus 277 d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg~~i~a~rDrnGlRPl~~~~ 356 (413)
T cd00713 277 DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDRNGLRPARYVI 356 (413)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeCCEEEEEeCCCCCcceEEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEeeccccccCCCCcccc
Q psy12805 150 LKDNVMVMASEVGVYDTDPANVQLK 174 (1429)
Q Consensus 150 ~~d~~~~~~se~g~~~~~~~~v~~~ 174 (1429)
|+|+.+++|||+|++++++++|.+|
T Consensus 357 t~d~~~v~ASE~gal~~~~~~V~~k 381 (413)
T cd00713 357 TKDGLLIMSSEVGVVDVPPEKVVEK 381 (413)
T ss_pred ECCCEEEEEeCCcccCCCcceeeec
Confidence 9999999999999999999999877
No 10
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=1.5e-51 Score=528.06 Aligned_cols=398 Identities=28% Similarity=0.371 Sum_probs=328.7
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEE-cCCcccHHHHHHHHHhcc
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-DGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Lia-sGGIrtg~Dv~kAlaLGA 617 (1429)
.|..+++.|+.+|+||++.-+ .+++.||.++|++.+|++|+++|+|.+++||+ ||.+|+.+|+++++.+||
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~--------~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA 673 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIA--------KGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGA 673 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCC--------CCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcCh
Confidence 455677889999999998533 56899999999999999999999999999997 999999999999999999
Q ss_pred hhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHhcCCCChh-------
Q psy12805 618 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA-GKPEHVINYLFMLAEEVRTHMAKLGIRKFA------- 689 (1429)
Q Consensus 618 davg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~-g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~------- 689 (1429)
++| +||+|+.++. ..|..+ ++. ...+.+.||++++.+||.|+|++|||++++
T Consensus 674 ~AV----~PYLA~eti~-~l~~~g---------------~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqi 733 (1485)
T PRK11750 674 TAV----YPYLAYETLG-DLVDTG---------------EILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQL 733 (1485)
T ss_pred hhh----hhHHHHHHHH-HHHhcC---------------CCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccc
Confidence 999 7999987321 112221 122 124889999999999999999999999999
Q ss_pred -hhcCCC-ccccccCCCCCccccCCChhHHHHhhhccC-----CC-cccccCcccccCCcccc-ccHHHHHHHHhhhcCC
Q psy12805 690 -DLVGRT-DLLKPREVGANPKAKMLNFAFLLKNALHMR-----PG-VNIRAGSETQDHQLEKR-LDNTLIQECEPVLSGK 760 (1429)
Q Consensus 690 -ElvGrs-dll~~~~~~~~~k~~gldl~~l~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~-l~~~~i~~~~~~~~~~ 760 (1429)
|.||++ +++..+++++.+++.|++|+.|.++....+ +. ....++.++++...|+| ++|++|..+|.+.+.+
T Consensus 734 FEaiGL~~~vv~~~F~gt~sri~Gi~~~~i~~e~~~rh~~a~~~~~~L~~~g~~~~r~~ge~H~~~p~~i~~lq~a~~~g 813 (1485)
T PRK11750 734 FEAVGLHDDVVDLCFKGVVSRIGGASFEDFEQDQKNLSKRAWLARKPIDQGGLLKYVHGGEYHAYNPDVVNTLQKAVQSG 813 (1485)
T ss_pred ccccCCCHHHHHHhcCCCCccCCCccHHHHHHHHHHHHHHhcCCccCCCCCCeeeeccCCcccccCHHHHHHHHHHHHcC
Confidence 889999 688888899999999999999987643321 11 12467788899999999 5899999999999877
Q ss_pred CCcEEEEEE-EeecCCcccccchhhhccccccCCCCCCcEE-----EEEeCCccchhhhcccCCeeEeecCCcccccCcc
Q psy12805 761 VPRIDLEYT-INNECRAFTATLSYHISIKTKEEGLPENSIN-----LKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKE 834 (1429)
Q Consensus 761 ~~~~~~~~~-i~n~~r~~g~~l~~~i~~~~g~~glp~~~i~-----i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~ 834 (1429)
.+..+.+|. ..+.+ ... +|++++.++.....+|.+.++ ...+.+++|||||+ |.+
T Consensus 814 ~~~~y~~y~~~~~~~-~~~-~lr~ll~~~~~~~~~p~~eve~v~~I~~rf~~~aMSfGal-----------------S~e 874 (1485)
T PRK11750 814 DYSDYQEYAKLVNER-PVA-TLRDLLALKPADNPIPLDEVEPAEELFKRFDSAAMSIGAL-----------------SPE 874 (1485)
T ss_pred CHHHHHHHHHHhccC-CCC-CHHHHhcccCCCCCCCccccccHHHHhcccccccCCCCcc-----------------CHH
Confidence 655555553 45544 343 699999988755567764332 35678999999999 677
Q ss_pred chhhhhcccceEEEecccccccccccC--CceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecC
Q psy12805 835 SFCAFLVRGVHVTLEGDANDYVGKGLS--GGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSG 912 (1429)
Q Consensus 835 ~~~g~~~~~~~i~l~G~and~vgkgms--GG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg 912 (1429)
++.++++ .||...++.+| ||++- .++ +. .+.-.|+|+|++||||+
T Consensus 875 A~~aLA~---------a~~~~G~~sntGEGG~~p------~~~--------------~~-~~~~~i~QiaSGrFGv~--- 921 (1485)
T PRK11750 875 AHEALAI---------AMNRLGGRSNSGEGGEDP------ARY--------------GT-EKVSKIKQVASGRFGVT--- 921 (1485)
T ss_pred HHHHHHH---------HHHHhCCceecCCCCCCH------HHH--------------hc-ccCCeEEEccCCcCCCC---
Confidence 8888855 88888888777 67751 111 21 13346899999999997
Q ss_pred ceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeeecCChhhHHHHHHHHHHHH
Q psy12805 913 AVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFH 992 (1429)
Q Consensus 913 ~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~~~~~~l~~~~~~~~ 992 (1429)
. ||+. +.++|||+
T Consensus 922 --~----------e~l~------------------------------------~a~~ieIK------------------- 934 (1485)
T PRK11750 922 --P----------AYLV------------------------------------NAEVLQIK------------------- 934 (1485)
T ss_pred --H----------HHhc------------------------------------cCCEEEEE-------------------
Confidence 2 6662 77888886
Q ss_pred HhhccHHHHHHhhcCCCCCCCe--EEEecchhccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHhhhCCCCceeEEEee
Q psy12805 993 EKTESEIAKNLLQTWPAPAKQF--VKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVS 1070 (1429)
Q Consensus 993 ~~t~s~~a~~~l~~~~~~~~~f--~kV~p~ia~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1070 (1429)
++|+ +||++++++ .||+|+||++|+++||++||||||||||||||||+|+|++||++||++||+|||||
T Consensus 935 ------i~QG---AKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a 1005 (1485)
T PRK11750 935 ------VAQG---AKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVS 1005 (1485)
T ss_pred ------ecCC---CCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 8999 999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccccceeccccceecceEecC
Q psy12805 1071 EVGVGVVASGVAKSIVSFEILP 1092 (1429)
Q Consensus 1071 ~~gv~~~a~g~ak~~~~~~~~~ 1092 (1429)
+.||||||+|+||+.+||...+
T Consensus 1006 ~~~vg~ia~gvaka~aD~I~Id 1027 (1485)
T PRK11750 1006 EPGVGTIATGVAKAYADLITIS 1027 (1485)
T ss_pred CCCccHHHhChhhcCCCEEEEe
Confidence 9999999999999999999988
No 11
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-53 Score=486.74 Aligned_cols=155 Identities=41% Similarity=0.657 Sum_probs=151.6
Q ss_pred chHHHHHhhccCCCCCCCCCC--CCcccccccccccchHhHHHHHHhhhcccCCCCCCC-ccceeeccCCCCCchHHHHH
Q psy12805 9 SEEEFRLLAEKCQLEVLGQHE--NTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPD-IKQLYPVVEPNLSDSGAADC 85 (1429)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~-~~~~~p~~~~~~sds~~~d~ 85 (1429)
-|..++++|.||||||++||| ||||+|+|||||||++||+|||+||+..++|++|++ +.+++|++.+++|||++|||
T Consensus 200 ~~s~~~l~HsRFSTNT~p~W~~AHPfr~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~dn 279 (371)
T COG0067 200 YKSAIALVHTRFSTNTFPSWPLAHPFRLLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASLDN 279 (371)
T ss_pred hceeEEEEEeccCCCCCCCCCccCcceeeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchhhhH
Confidence 356789999999999999999 999999999999999999999999999999999996 99999999999999999999
Q ss_pred --------------HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEe
Q psy12805 86 --------------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLK 151 (1429)
Q Consensus 86 --------------a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~ 151 (1429)
|+|||+||||++++.|+++.++||+|++++||||||||+++||||+++||+||||||||+||++|+
T Consensus 280 ~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~~f~dgse~gA~ldrngLrp~Ry~~t~ 359 (371)
T COG0067 280 ALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARYWITK 359 (371)
T ss_pred HHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCcceeEEeeeeeeeeeccCCCCcceEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeccc
Q psy12805 152 DNVMVMASEVGV 163 (1429)
Q Consensus 152 d~~~~~~se~g~ 163 (1429)
|+.+|++||+|+
T Consensus 360 d~~vv~~se~gv 371 (371)
T COG0067 360 DGEVVVASEAGV 371 (371)
T ss_pred CCEEEEEEeccC
Confidence 999999999996
No 12
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=100.00 E-value=5.9e-46 Score=433.76 Aligned_cols=155 Identities=45% Similarity=0.785 Sum_probs=137.6
Q ss_pred CcchHHHHHhhccCCCCCCCCCC--CCcccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 7 SQSEEEFRLLAEKCQLEVLGQHE--NTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
..-+..++++|.||||||.+||+ ||||+|||||||||+++|+|||++|+..+.+++|+++++++||+++++|||++||
T Consensus 191 ~~~~s~~~i~H~RysTnt~p~w~~AqPf~~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~ 270 (361)
T PF00310_consen 191 EDFKSHFAIGHQRYSTNTFPSWENAQPFRALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLD 270 (361)
T ss_dssp TTEEBSEEEEEEEE-SSSSCSGGGSSSEEEEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHH
T ss_pred ccccceEEEEEEecCCCCCCcchhcChHHHhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHH
Confidence 34456789999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred H--------------HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEE
Q psy12805 85 C--------------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVL 150 (1429)
Q Consensus 85 ~--------------a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~ 150 (1429)
| |+|||+||+|++++.|++++++||+|++++||||||||+|+|+||++++|++|||||||+||++|
T Consensus 271 ~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g~~~~a~~Dr~GLRP~~~~~~ 350 (361)
T PF00310_consen 271 NLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDGNGVGAFLDRNGLRPLRYGIT 350 (361)
T ss_dssp HHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECSSEEEEEE-TT--S--EEEEE
T ss_pred HHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEECCCCCcceEEEEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEeec
Q psy12805 151 KDNVMVMASEV 161 (1429)
Q Consensus 151 ~d~~~~~~se~ 161 (1429)
+|+.+++|||+
T Consensus 351 ~d~~~v~aSE~ 361 (361)
T PF00310_consen 351 EDGLVVLASEA 361 (361)
T ss_dssp TTCEEEEESST
T ss_pred CCCEEEEEeCC
Confidence 99999999995
No 13
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=383.72 Aligned_cols=302 Identities=34% Similarity=0.435 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChh--------hhcCCC-ccccccCCCCCccccCCChhHHHHhhhccC-------
Q psy12805 662 PEHVINYLFMLAEEVRTHMAKLGIRKFA--------DLVGRT-DLLKPREVGANPKAKMLNFAFLLKNALHMR------- 725 (1429)
Q Consensus 662 ~e~v~ny~~~l~~eLr~iMa~mGi~sl~--------ElvGrs-dll~~~~~~~~~k~~gldl~~l~~~~~~~~------- 725 (1429)
.+.+.||.+.+.+++.++|++||+++++ |.+|.+ +++..++.+..+++.++.+..++.+.....
T Consensus 4 ~~~~~~~~~~~~~~~~k~~skmgi~~~~sy~~a~~~~~~gl~~~~v~~~f~g~~~r~~~~~~~~~~~~~~~~~~~a~~~~ 83 (485)
T COG0069 4 EEALKNYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIGGISLDEIAQEISRRHRTAGAVK 83 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhccchhhccCceeeccccCCcHHHheecCCCcccccccchHHHhHHHHHHHHhhcccc
Confidence 4778999999999999999999999998 566776 566777778888999999998887643211
Q ss_pred CCcccccCcccccCCccccc-cHHHHHHHHhhhc-CCCCcEEEEEE-EeecCCcccccchhhhccccccC-CCCCCc---
Q psy12805 726 PGVNIRAGSETQDHQLEKRL-DNTLIQECEPVLS-GKVPRIDLEYT-INNECRAFTATLSYHISIKTKEE-GLPENS--- 798 (1429)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~l-~~~~i~~~~~~~~-~~~~~~~~~~~-i~n~~r~~g~~l~~~i~~~~g~~-glp~~~--- 798 (1429)
+......+..+++...+.|+ ++.++..+|.+.. ...+..+.+|+ ..|+ |...+ |++.+...+... .++.+.
T Consensus 84 ~~~~~~~G~~~~r~~ge~h~~~p~~~~~~q~a~~~~~~~~~~~~~~~~i~~-~~~~~-~r~~~d~~~~~~~~i~~~~vep 161 (485)
T COG0069 84 AKELDVGGFGTERDGGEPHFYDPDTLFALQVATRSEGGYREYKEYSVLIGT-RASTT-LRDLLDFIADGSKPIPIEEVEP 161 (485)
T ss_pred cccccccCcceecccCCCccCCHHHHhHhhhcccccCchHHHHHHHHHhhc-ccchh-hhhhhhhccccccccccccccc
Confidence 00112345556666677775 6889998888775 33334445554 3344 44444 999998887654 555553
Q ss_pred -EEE-EEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccC--CceEEEeCCCCCC
Q psy12805 799 -INL-KLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLS--GGEIIIYPPKTST 874 (1429)
Q Consensus 799 -i~i-~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgms--GG~ivv~p~~~~~ 874 (1429)
.+| +.+.+++|||||. |++++..++. .+|...++.++ ||+...
T Consensus 162 ~~~i~~~~~~~aMS~GAl-----------------S~eA~~alA~---------a~~~~G~~sntGEGGe~~~------- 208 (485)
T COG0069 162 VLELKKRFVTGAMSFGAL-----------------SKEAHEALAR---------AMNRIGTKSNTGEGGEDPE------- 208 (485)
T ss_pred cceeeecccccccCCccc-----------------cHHHHHHHHH---------HHHHhcCcccCCCCCCCHH-------
Confidence 334 4788999999999 6778888866 88888888888 788622
Q ss_pred CCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEE
Q psy12805 875 FESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYV 954 (1429)
Q Consensus 875 ~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv 954 (1429)
-+..++..|+|.|++||||+ . +|++
T Consensus 209 ---------------~~~~~~s~I~QvaSGRFGV~-----~----------~yL~------------------------- 233 (485)
T COG0069 209 ---------------RYEDGRSAIKQVASGRFGVT-----P----------EYLA------------------------- 233 (485)
T ss_pred ---------------HhccccceEEEeccccCccC-----H----------HHhC-------------------------
Confidence 22455667899999999997 2 4653
Q ss_pred ecCCCchhcccCccceEeeecCChhhHHHHHHHHHHHHHhhccHHHHHHhhcCCCCCCCe--EEEecchhccccCCCCCc
Q psy12805 955 LDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQF--VKVTKDIASTRHSVPGVG 1032 (1429)
Q Consensus 955 ~~~~~~f~~~~n~~~v~~~~~~~~~~~~~l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f--~kV~p~ia~~r~~~~~~~ 1032 (1429)
|.+.+||+ ++|+ +||++++|+ .||+|+||++|+++||++
T Consensus 234 -----------~a~~ieIK-------------------------iaQG---AKPGeGG~Lpg~KV~~~IA~~R~~~pG~~ 274 (485)
T COG0069 234 -----------NADAIEIK-------------------------IAQG---AKPGEGGQLPGEKVTPEIAKTRGSPPGVG 274 (485)
T ss_pred -----------ccceEEEE-------------------------eccC---CCCCCCCCCCCccCCHHHHHhcCCCCCCC
Confidence 78888986 9999 999999998 999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhhCCCCceeEEEeeeccccceeccccceecceEecC
Q psy12805 1033 LISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKSIVSFEILP 1092 (1429)
Q Consensus 1033 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gv~~~a~g~ak~~~~~~~~~ 1092 (1429)
+|||||||||||||||+|||++||++||.++|+|||||+.||||||+|+||+.+|+...+
T Consensus 275 ~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~Id 334 (485)
T COG0069 275 LISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITID 334 (485)
T ss_pred CcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999988
No 14
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=100.00 E-value=3.1e-34 Score=315.15 Aligned_cols=184 Identities=32% Similarity=0.564 Sum_probs=163.0
Q ss_pred cccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEE
Q psy12805 787 IKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEII 866 (1429)
Q Consensus 787 ~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~iv 866 (1429)
++|...+|| ++++|+++|++||+||+|| +|.+ |+|+|||+|++|++|+||+|+
T Consensus 36 ~~~ig~gl~-~~~~I~v~G~aG~~~G~~m-~gg~-------------------------I~v~Gna~d~~G~~m~GG~I~ 88 (232)
T cd00981 36 QRYIGDGLP-GNVRINIYGVPGNDLGAFM-SGPT-------------------------IIVYGNAQDDVGNTMNDGKIV 88 (232)
T ss_pred ceecccCCC-CCEEEEEEecCcHHHHhhc-CCCE-------------------------EEEEecchhhhhccccCcEEE
Confidence 567778887 7899999999999999994 4666 999999999999999999999
Q ss_pred EeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeec-----CceEEEcc-cCccccccccCceEEEeCC--
Q psy12805 867 IYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNS-----GAVAVVEG-VGDHGCEYMTGGCAVILGL-- 938 (1429)
Q Consensus 867 v~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~s-----g~~~vv~G-~g~~~~eyM~gG~ivvlG~-- 938 (1429)
|+ +.+||.+.|+|+||+|+|+|+||+|||+||+ ++++||+| +|||+||||+||+|+|+|+
T Consensus 89 V~------------G~aG~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~ivV~G~~~ 156 (232)
T cd00981 89 IH------------GSAGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVIIVLGLGT 156 (232)
T ss_pred EE------------CChHHHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEEEEECCCc
Confidence 98 5579999999999999999999999999999 99999999 9999999999999999999
Q ss_pred ----CCCcccccccccEEEEecCCCchhcccCccceEeeecCChhhHHHHHHHHHHHHHhhccHHHHHHhhcCCCCCCCe
Q psy12805 939 ----TGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQF 1014 (1429)
Q Consensus 939 ----~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~~~~~~~~~~l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f 1014 (1429)
+|.++|++|+||+|||++..+. .+++.+.+ +.+++ ++|.++|+.+|++|.++|+|++++- |+ ..|
T Consensus 157 ~~~~~G~~~G~gM~gG~i~v~G~~~~--~~~~~~~~-~~~~~-~~d~~~L~~li~~~~~~~~~~~~~~-~~------~~~ 225 (232)
T cd00981 157 DEEPVGRYIGTGMHGGVIYIRGKVER--SKLGKEVP-KFELT-EEDLEFIEKYIEEFCKEFGYDKAEI-LD------EEF 225 (232)
T ss_pred ccccccccccCCCcceEEEEEcCCCc--cccCcCcE-EecCC-HHHHHHHHHHHHHHHHHHCccHHHH-hh------cCc
Confidence 9999999999999999987654 23444433 55554 6799999999999999999999854 43 579
Q ss_pred EEEecc
Q psy12805 1015 VKVTKD 1020 (1429)
Q Consensus 1015 ~kV~p~ 1020 (1429)
.|+.|.
T Consensus 226 ~kl~~~ 231 (232)
T cd00981 226 TKLKPK 231 (232)
T ss_pred eEEecC
Confidence 999885
No 15
>PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation []. GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.97 E-value=3.8e-32 Score=294.97 Aligned_cols=195 Identities=37% Similarity=0.509 Sum_probs=150.0
Q ss_pred EEEEeecCCcccccchhhhccccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceE
Q psy12805 767 EYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHV 846 (1429)
Q Consensus 767 ~~~i~n~~r~~g~~l~~~i~~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i 846 (1429)
++++.|.+|.+++.|..++.+++++..++.+..++.++|++||+||+++..|++ |
T Consensus 2 ~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g~~G~~~ga~~~~g~~-------------------------I 56 (202)
T PF01493_consen 2 DEPVINADRFTGRRLNQSIVKRLGEGMLKKDTGTVIINGNAGQRFGAFMSGGLK-------------------------I 56 (202)
T ss_dssp -EEE-TT--STTHHHHHHHHHHCTTTSS-TTCEEEEEEEEE-TTTTTT-BTTEE-------------------------E
T ss_pred CeeeEcCCcchhhhhhHHHHHHHhcCCCCCCcEEEEEeCCCCCEEEecCCCCeE-------------------------E
Confidence 467889999999999999999999877777889999999999999999999998 7
Q ss_pred EEecccccccccccCCceEEEeCCCCC--CCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCcc
Q psy12805 847 TLEGDANDYVGKGLSGGEIIIYPPKTS--TFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDH 923 (1429)
Q Consensus 847 ~l~G~and~vgkgmsGG~ivv~p~~~~--~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~ 923 (1429)
+|+|+++||+|++|+||+|+|+++... ......++++||.+.|||++|+|+|+|+||.|+|++|++++++|+| +|+|
T Consensus 57 ~V~G~ag~~~G~~m~GG~I~V~Gn~~~~~~~~~~~~~~~G~~~~~Gm~gG~i~V~G~aG~r~g~~m~gg~iiV~G~~g~~ 136 (202)
T PF01493_consen 57 VVEGDAGDYVGKGMSGGTIIVKGNAGDDDGGGIVVSGSAGDYLGYGMRGGTIFVQGNAGSRAGIRMSGGTIIVEGNAGDF 136 (202)
T ss_dssp EEEEEE-STTTTT-ECCEEEEE--TT---SS-GGGSEEC-SSTTTT--CEEEEESSEE-TTTTTT-CCEEEEESEB--SS
T ss_pred EEEecccchhHhhCCCCEEEEECCcccccccceEeeeeeeccccccccceEEEEEeccccceeeecceeEEEEeccccCC
Confidence 777777777777777777777766654 3334456899999999999999999999999999999999999999 7999
Q ss_pred ccccccCceEEEeCCCCCcccccccccEEEEecCCC-chhcccCccceEeeecCC-hhhHHHHHH
Q psy12805 924 GCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDG-SFAKKCNMEMVELLPLEL-PEDLDYVKS 986 (1429)
Q Consensus 924 ~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~-~f~~~~n~~~v~~~~~~~-~~~~~~l~~ 986 (1429)
+||||+||+|+|+|++|+++|++|+||+|||+++.+ .|...++.+.|+...|+. +++.++||+
T Consensus 137 ~g~~M~gG~ivV~G~~G~~~g~~m~gG~I~v~g~~~~~l~~~~~~~~v~~~~i~~~~~~~~~~~~ 201 (202)
T PF01493_consen 137 AGEYMTGGTIVVLGDAGDNAGAGMKGGTIYVRGPVEDSLPGFVNEEEVEDEDIEKLDEELKQLKN 201 (202)
T ss_dssp TTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS-THHHHB-CCCEEEEES-S-CCHHHHHHH
T ss_pred eeecccCCEEEEecCCCcccCCCCCCeEEEEcCCCccccccccceeeeecccccCCHHHHHhhcc
Confidence 999999999999999999999999999999999988 899999999999999987 777777765
No 16
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.96 E-value=4.6e-29 Score=292.59 Aligned_cols=279 Identities=24% Similarity=0.318 Sum_probs=210.1
Q ss_pred CCCCCCCCcccc-----cccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCC---CCccccccCCCccccccee
Q psy12805 368 PVDISEVEPAAE-----IVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGG---ENPERYLSSGDENQRSAIK 438 (1429)
Q Consensus 368 ~i~~~~v~~~~~-----i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg---~~~~~~~~~~~~~~~~~I~ 438 (1429)
.+++++||+.++ |..||+|++||+|+ .++++|.+||++|.++|+++++|+++ ++|+ + ....+.++
T Consensus 42 ~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~-----~~~~~~vr 115 (352)
T PRK05437 42 ELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-L-----ADSFSVVR 115 (352)
T ss_pred CCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-h-----HHHHHHHH
Confidence 468899998887 56999999999996 89999999999999999999999986 3444 2 23445677
Q ss_pred ecccCCCCCChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHH
Q psy12805 439 QVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLK 518 (1429)
Q Consensus 439 Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk 518 (1429)
+.++.++ .+.|..+.+++ |-.+.. .....+.....|...|++++|++++|++++|| +.+.+.|+.++
T Consensus 116 ~~~p~~p-----~~aNl~~~~~~---~~~~~~--~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f---~~~le~i~~i~ 182 (352)
T PRK05437 116 KVAPDGL-----LFANLGAVQLY---GYGVEE--AQRAVEMIEADALQIHLNPLQELVQPEGDRDF---RGWLDNIAEIV 182 (352)
T ss_pred HHCCCce-----EEeecCccccC---CCCHHH--HHHHHHhcCCCcEEEeCccchhhcCCCCcccH---HHHHHHHHHHH
Confidence 7775443 34444443331 000000 00000001122445588999999999999876 46667788888
Q ss_pred HhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccc-----------cccccCCChHHHHHHHHHHHH
Q psy12805 519 CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWT-----------GIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 519 ~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~-----------~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.. ++||+||.+...-....|..+.++|+|+|+|+|+ |||++++.. ...+||+|+..+|.++.+.+
T Consensus 183 ~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~-GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~- 259 (352)
T PRK05437 183 SAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGA-GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL- 259 (352)
T ss_pred Hhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCC-CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-
Confidence 876 7999999774322335778889999999999998 567665433 23478999999999988753
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHH
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVIN 667 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~n 667 (1429)
.+++||++|||+|+.|++|++++|||+|++|+++|.++. .+++++|.+
T Consensus 260 -----~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~---------------------------~~g~~~v~~ 307 (352)
T PRK05437 260 -----PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAAL---------------------------EGGEEAVIE 307 (352)
T ss_pred -----CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHH---------------------------hccHHHHHH
Confidence 368999999999999999999999999999999888652 456899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhcCCCcccccc
Q psy12805 668 YLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701 (1429)
Q Consensus 668 y~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~ 701 (1429)
|++.+.+||+.+|..+|+++++||.+ .+++...
T Consensus 308 ~i~~~~~eL~~~m~~~G~~~i~eL~~-~~~~~~~ 340 (352)
T PRK05437 308 LIEQWIEELKIAMFLTGAKNIAELRK-VPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCC-CCEEecH
Confidence 99999999999999999999999854 4444433
No 17
>cd00504 GXGXG GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met
Probab=99.96 E-value=5.4e-29 Score=258.33 Aligned_cols=148 Identities=59% Similarity=0.944 Sum_probs=137.7
Q ss_pred CcccccchhhhccccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEeccccc
Q psy12805 775 RAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDAND 854 (1429)
Q Consensus 775 r~~g~~l~~~i~~~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and 854 (1429)
|.+|++++++|.++ ..++..+++|.++|+++|++|++|. |.+ |+|+|+++|
T Consensus 1 ~~~g~~~~~~~~~~---~~~~~~~~~i~i~G~~g~~~G~~m~-gg~-------------------------I~v~G~agd 51 (149)
T cd00504 1 RAVGTRGSRYIGKR---PGLPEDTVEIIINGSAGQSFGAFMA-GGT-------------------------ITVEGNAND 51 (149)
T ss_pred CcEeEeeehhhhhc---cCCCCCcEEEEEEccCchHhhhhcC-CCE-------------------------EEEEEcCch
Confidence 56888999999988 4667789999999999999999944 545 999999999
Q ss_pred ccccccCCceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceE
Q psy12805 855 YVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCA 933 (1429)
Q Consensus 855 ~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~i 933 (1429)
++|++|+||+|+|+++.. +.++++||.+.|+|++|+++|+|+||+|+|++|+++++||+| +|+|+||||++|+|
T Consensus 52 ~~G~~m~GG~I~V~g~~~-----~~~G~ag~~~~~gm~gG~i~V~G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~i 126 (149)
T cd00504 52 YVGKGMSGGEIVIHPPAG-----DENGIAGNVALYGATGGKIFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTI 126 (149)
T ss_pred hhhccccCCEEEEecCCc-----ccceeehHhhhhhccCCEEEEEecchhhhhhhccCcEEEEEeecCccccccccCCEE
Confidence 999999999999998876 677999999999999999999999999999999999999999 89999999999999
Q ss_pred EEeCCCCCcccccccccEEEEec
Q psy12805 934 VILGLTGRNFAAGMSGGIAYVLD 956 (1429)
Q Consensus 934 vvlG~~g~~~g~gM~gG~~yv~~ 956 (1429)
+|+|++|.++|++|++|+|||++
T Consensus 127 vV~G~~g~~~g~~M~gG~i~v~g 149 (149)
T cd00504 127 VVLGDAGRNFGAGMSGGVIYVRG 149 (149)
T ss_pred EEeCCCCcCccccCcceEEEEeC
Confidence 99999999999999999999985
No 18
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.95 E-value=5.7e-27 Score=272.76 Aligned_cols=263 Identities=25% Similarity=0.300 Sum_probs=202.4
Q ss_pred CCCCCCCCcccc-----cccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCCC---CccccccCCCccccccee
Q psy12805 368 PVDISEVEPAAE-----IVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGE---NPERYLSSGDENQRSAIK 438 (1429)
Q Consensus 368 ~i~~~~v~~~~~-----i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg~---~~~~~~~~~~~~~~~~I~ 438 (1429)
.+++++|++.++ +..||++++||+|+ .+++++..||++|.++|+++++|+++. +|+. ....+.++
T Consensus 34 ~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~------~~~~~~vr 107 (326)
T cd02811 34 ELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPEL------AESFTVVR 107 (326)
T ss_pred CCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhh------hhHHHHHH
Confidence 467899998888 77999999999995 899999999999999999999999842 3332 13345567
Q ss_pred ecccCCCCCChhhhccccchhhhcccCCCCCCCCCcccccch------HHHHhccCCCCccccccCCCCCCCCCHHHHHH
Q psy12805 439 QVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT------KDIASTRHSVPGVGLISPPPHHDIYSIEDLAE 512 (1429)
Q Consensus 439 Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~------~~iA~~r~~~pg~~LisP~~h~di~siedL~q 512 (1429)
+..+..+ .+.|....+++ |- ....+. +..|...|++|.|++++|++++|| +.+.+
T Consensus 108 ~~~~~~p-----~~~Nl~~~~~~---~~--------~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df---~~~~~ 168 (326)
T cd02811 108 EAPPNGP-----LIANLGAVQLN---GY--------GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDF---RGWLE 168 (326)
T ss_pred HhCCCce-----EEeecCccccC---CC--------CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCH---HHHHH
Confidence 7766333 34444444442 00 001111 112444588999999999998876 45666
Q ss_pred HHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCcccc-------------ccccccCCChHHHH
Q psy12805 513 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW-------------TGIKNAGLPWELGV 579 (1429)
Q Consensus 513 lI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~-------------~~~~~~GiP~~laL 579 (1429)
.|+.+++.. ++||+||.+...-....|..+.++|+|+|+++|+ |||.++.. ....+||+|+..+|
T Consensus 169 ~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l 246 (326)
T cd02811 169 RIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASL 246 (326)
T ss_pred HHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccccccccccccccccccccccccccHHHHH
Confidence 777777765 7999999764422345788899999999999998 55554421 23457899999999
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 659 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~ 659 (1429)
.++.+.+ .+++||++|||+++.|++|++++||++|++|+++|.++- .
T Consensus 247 ~~~~~~~------~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~---------------------------~ 293 (326)
T cd02811 247 LEVRSAL------PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL---------------------------E 293 (326)
T ss_pred HHHHHHc------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh---------------------------c
Confidence 8887653 168999999999999999999999999999998887652 3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 660 GKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 660 g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
+.++|.+|++.+.+||+.+|..+|+++++|+
T Consensus 294 -g~~~~~~~i~~~~~el~~~m~~~G~~si~el 324 (326)
T cd02811 294 -GEEAVIETIEQIIEELRTAMFLTGAKNLAEL 324 (326)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 6799999999999999999999999999997
No 19
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.94 E-value=2.8e-26 Score=267.70 Aligned_cols=276 Identities=22% Similarity=0.273 Sum_probs=207.8
Q ss_pred CCCCCCCCCcccc-----cccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCCC---CccccccCCCcccccce
Q psy12805 367 KPVDISEVEPAAE-----IVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGE---NPERYLSSGDENQRSAI 437 (1429)
Q Consensus 367 ~~i~~~~v~~~~~-----i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg~---~~~~~~~~~~~~~~~~I 437 (1429)
+.+++++|+++++ |..||++++||+|+ .+.+++.+||++|++.|+++++|+++. +|+. ......+
T Consensus 34 p~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~------~~~~~~v 107 (333)
T TIGR02151 34 PEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET------ADTFEVV 107 (333)
T ss_pred CCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh------HhHHHHH
Confidence 4688999998777 56999999999996 889999999999999999999998752 2332 1223556
Q ss_pred eecccCCCCCChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHH
Q psy12805 438 KQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDL 517 (1429)
Q Consensus 438 ~Q~asgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~L 517 (1429)
++.++..+ .+.|..+.|+... + +-+ .....+..+..|...|+++.|++++|+++++| +.+.+.|+.+
T Consensus 108 r~~~~~~p-----~i~nl~~~~~~~~-~--~~~--~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f---~~~le~i~~i 174 (333)
T TIGR02151 108 REEAPNGP-----LIANIGAPQLVEG-G--PEE--AQEAIDMIEADALAIHLNVLQELVQPEGDRNF---KGWLEKIAEI 174 (333)
T ss_pred HHhCCCCc-----EEeecCchhhccc-c--HHH--HHHHHHHhcCCCEEEcCcccccccCCCCCcCH---HHHHHHHHHH
Confidence 66665543 5566655554210 0 000 00000111222556699999999999999887 5677788888
Q ss_pred HHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCcccc-----------ccccccCCChHHHHHHHHHHH
Q psy12805 518 KCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW-----------TGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 518 k~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~-----------~~~~~~GiP~~laL~ev~q~L 586 (1429)
++.. ++||+||.+...-....|..+.++|+|+|+|+|++ ||.+... ....+||+|+..+|.++.+
T Consensus 175 ~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-- 250 (333)
T TIGR02151 175 CSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-- 250 (333)
T ss_pred HHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHHHh--
Confidence 8876 79999997643223457788999999999999974 5654432 2235789999888888764
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVI 666 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ 666 (1429)
++.+++||++|||+|+.|++|++++|||+|++|+++|.++- ..+++.|.
T Consensus 251 ----~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~---------------------------~~g~~~v~ 299 (333)
T TIGR02151 251 ----DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAAL---------------------------DEGEEAVI 299 (333)
T ss_pred ----cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHH---------------------------hcCHHHHH
Confidence 23469999999999999999999999999999998887651 35789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhhcCCCcc
Q psy12805 667 NYLFMLAEEVRTHMAKLGIRKFADLVGRTDL 697 (1429)
Q Consensus 667 ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdl 697 (1429)
+|++.+.+||+.+|..+|+++++||. +.++
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~-~~~~ 329 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELK-KVPL 329 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHc-cCCe
Confidence 99999999999999999999999984 4443
No 20
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.94 E-value=2.9e-28 Score=274.60 Aligned_cols=71 Identities=63% Similarity=1.095 Sum_probs=61.2
Q ss_pred cchhHHHHHhhccccccchHhHHHHHHHHHhcC------------CHHHHHhhhHHhHhhcccccccccCCCccceeecC
Q psy12805 189 REVHHMCVLLGYGADAICPYLVFEMAKSLRAEG------------NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVG 256 (1429)
Q Consensus 189 r~~h~~~~l~g~ga~av~pyl~~~~~~~~~~~~------------~~~~a~~~g~~kvmskmgis~~~sy~gaq~fe~~g 256 (1429)
||+|||||||||||+||||||+||++.++.+++ ||++|++|||+|||||||||||+||+|||||||||
T Consensus 205 re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiFeaiG 284 (287)
T PF04898_consen 205 REVHHFATLLGYGADAVNPYLAYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIFEAIG 284 (287)
T ss_dssp -SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEESS
T ss_pred ccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceeeeecc
Confidence 999999999999999999999999999987665 99999999999999999999999999999999999
Q ss_pred CCH
Q psy12805 257 LAE 259 (1429)
Q Consensus 257 l~~ 259 (1429)
|++
T Consensus 285 L~~ 287 (287)
T PF04898_consen 285 LSQ 287 (287)
T ss_dssp B--
T ss_pred CCC
Confidence 985
No 21
>TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C. Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme.
Probab=99.92 E-value=3.3e-25 Score=247.19 Aligned_cols=173 Identities=23% Similarity=0.330 Sum_probs=139.3
Q ss_pred chhhhccccccCCCCCCcEEEEEeCCc--cchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEeccccccccc
Q psy12805 781 LSYHISIKTKEEGLPENSINLKLTGSA--GQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGK 858 (1429)
Q Consensus 781 l~~~i~~~~g~~glp~~~i~i~~~g~a--G~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgk 858 (1429)
|+.++...... .++..+|.+.|.. =-.+|+.|+.| +|+|+||+|.|+|..|++|. |+|+|+|+|++|+
T Consensus 45 ~~d~f~v~~~~---~~~~~~l~i~g~~~r~~~IG~~m~~g-~I~v~G~~G~~~G~~M~gG~------I~V~G~ag~~~G~ 114 (260)
T TIGR03122 45 LGDLFEVEGDG---KPDETRLVIDGDTSRVKRIGERMSAG-EIVVEGDVGMHVGAEMKGGK------IVVNGNADSWLGC 114 (260)
T ss_pred ehheeeeeecC---CCCceEEEEECCCccCCeeeCCCCCC-EEEEEccchhHHhccCCCCE------EEEEecCchhhhC
Confidence 55555554432 2344567788875 45678887665 89999999988876666665 9999999999999
Q ss_pred ccCCceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeC
Q psy12805 859 GLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILG 937 (1429)
Q Consensus 859 gmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG 937 (1429)
.|+||+|+|+++....... ...|+. .||+||+|+|+|+||+|+|.+|++++++|+| +|+|+|+||.||+|+|+|
T Consensus 115 ~m~GG~I~V~GnAg~~~G~---~~~G~~--~gM~GG~I~V~GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G 189 (260)
T TIGR03122 115 EMKGGEIEVKGNAGDYVGS---AYRGEW--RGMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDG 189 (260)
T ss_pred cccCCEEEEECCCcccccc---eeeccc--ccccCCEEEEEechhHhhhhhccCcEEEEeeecccceeccccCCEEEEec
Confidence 9999999998554322211 111222 4999999999999999999999999999999 999999999999999999
Q ss_pred CCCCcccccccccEEEEecCCCchhcccCcc
Q psy12805 938 LTGRNFAAGMSGGIAYVLDVDGSFAKKCNME 968 (1429)
Q Consensus 938 ~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~ 968 (1429)
++|.++|++|.+|+|||+++...|.+.++..
T Consensus 190 ~~g~~~g~~M~~GtI~v~g~~~~~~p~F~~~ 220 (260)
T TIGR03122 190 DVGRRPGGEMKRGTIVVGGKPDELLPSFKFE 220 (260)
T ss_pred ccCcccccCCcceEEEEeCCccccCCCcccc
Confidence 9999999999999999999998888777554
No 22
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.91 E-value=1.1e-23 Score=253.59 Aligned_cols=237 Identities=20% Similarity=0.183 Sum_probs=179.8
Q ss_pred cHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccccccccccCccceecccc---ccc--ceEEEccCCCCCcCC----
Q psy12805 1154 PYEYQRALKQILAEGVENKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRSID---KTR--GFIKYSRETAPYRPA---- 1224 (1429)
Q Consensus 1154 p~~y~r~l~~~~~~~~~~~~~~~~~~~~~~~~~v~die~~i~~~~k~~~~~~~---k~~--gf~kiAtGs~P~~p~---- 1224 (1429)
..||+++++.... ...+....++.--...+=++...++.+.++. .+.+.+ .+. .++.|||||+|+.|+
T Consensus 79 ~id~~~~~~~k~~-v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~--~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~ 155 (454)
T COG1249 79 KIDFEKLLARKDK-VVRLLTGGVEGLLKKNGVDVIRGEARFVDPH--TVEVTGEDKETITADNIIIATGSRPRIPPGPGI 155 (454)
T ss_pred CcCHHHHHHHHHH-HHHHHhhhHHHHHhhCCCEEEEEEEEECCCC--EEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCC
Confidence 4677788777655 2222222111100000113444455555533 333332 232 338899999999884
Q ss_pred -ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhccchHHHHHHHHHHhCC--
Q psy12805 1225 -EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYHNNWSEALNQLLQTNN-- 1295 (1429)
Q Consensus 1225 -~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~~e~~~al~~~Le~~G-- 1295 (1429)
..++.|+++.+.+...|++++|+|||+||||+++.++++|++| +++||.+|+ ++++.+.+.|++.+
T Consensus 156 ~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~-----ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 156 DGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDP-----EISKELTKQLEKGGVK 230 (454)
T ss_pred CCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCH-----HHHHHHHHHHHhCCeE
Confidence 5668899997777799999999999999999999999999999 889999998 99999999999966
Q ss_pred CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCCCEEecCCCCccCCCCEE
Q psy12805 1296 FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRSNYSTVEKTYLTTVPRVY 1374 (1429)
Q Consensus 1296 ~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G~I~VD~~~~~TSvPgVF 1374 (1429)
+.++.+++.++.. .++ +.....+++..++++|.||+|+|++|+...| |+++||++|++|+|+|| .+++|++|+||
T Consensus 231 i~~~~~v~~~~~~--~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~Iy 306 (454)
T COG1249 231 ILLNTKVTAVEKK--DDG-VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIY 306 (454)
T ss_pred EEccceEEEEEec--CCe-EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEE
Confidence 5667888777552 223 3333334433378999999999999777778 99999999999999999 58999999999
Q ss_pred EeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1375 AAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1375 AAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
|+|||+.++++.+.|..||++||.+|..
T Consensus 307 A~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 307 AIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred EeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999987
No 23
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.90 E-value=5.3e-26 Score=265.24 Aligned_cols=220 Identities=34% Similarity=0.453 Sum_probs=141.8
Q ss_pred ccHHHHHHHHhhhcCCCCcEEEEEE-EeecCCcccccchhhhccccccCC-CCCCc----EEE-EEeCCccchhhhcccC
Q psy12805 745 LDNTLIQECEPVLSGKVPRIDLEYT-INNECRAFTATLSYHISIKTKEEG-LPENS----INL-KLTGSAGQSFCAFLVR 817 (1429)
Q Consensus 745 l~~~~i~~~~~~~~~~~~~~~~~~~-i~n~~r~~g~~l~~~i~~~~g~~g-lp~~~----i~i-~~~g~aG~s~Ga~~~~ 817 (1429)
.++++++.+|.+.+.+.+..+..|. ..| +|.....+++.+..++.... ++.+. +++ ....+++|||||+
T Consensus 3 ~~p~~~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~r~~L~~~~~~~~~i~~~~~~~p~~l~~p~~is~MS~GaL--- 78 (368)
T PF01645_consen 3 YNPEVIKLLQKAVRVNSYESYKEYRERVN-EREFPSALRDLLEFKYDEAPSIPGEKVEKPLELSIPFMISAMSYGAL--- 78 (368)
T ss_dssp S-HHHHHHHHHHHHCT-HHHHHHHHHHHH-TS--S-SGGGGEEE--SS-----GGGS--HHHHHTTEEEEEB-CTTC---
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCccccCcccccccCCCCcCchhhcCChhhheeeeecccCChhhc---
Confidence 4688899999888865544445553 334 45566789999998876543 33322 111 2345799999999
Q ss_pred CeeEeecCCcccccCccchhhhhcccceEEEecccccccccccC--CceEEEeCCCCCCCCCCccceeccccccccccC-
Q psy12805 818 GVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLS--GGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG- 894 (1429)
Q Consensus 818 G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgms--GG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG- 894 (1429)
|.+++.++++ .++......++ ||.+ .|....+
T Consensus 79 --------------S~~a~~Ala~---------ga~~~G~~~ntGEGg~~----------------------~~~~~~~~ 113 (368)
T PF01645_consen 79 --------------SEEAKEALAK---------GANMAGTASNTGEGGEL----------------------PEERKAAK 113 (368)
T ss_dssp ---------------HHHHHHHHH---------HHHHCT-EEEETTT-------------------------GGGCSB-T
T ss_pred --------------CHHHHHHHHH---------HHHHhCceEecCCCCCC----------------------HHHhcccC
Confidence 6778888855 55555544444 4554 3333333
Q ss_pred ceeEecccCcceeeeecCceEEEcccCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchhcccCccceEeee
Q psy12805 895 KAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLP 974 (1429)
Q Consensus 895 ~~~i~g~ag~Rfgvr~sg~~~vv~G~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~~~~n~~~v~~~~ 974 (1429)
+..|.|.+++||||+. +|+ .+.++|||+
T Consensus 114 ~~~I~Q~~sg~fGv~~---------------~~l------------------------------------~~a~~iEIK- 141 (368)
T PF01645_consen 114 DLRIKQIASGRFGVRP---------------EYL------------------------------------KQADMIEIK- 141 (368)
T ss_dssp TSSEEEE-TT-TT--H---------------HHH------------------------------------CC-SEEEEE-
T ss_pred CceEEEcCCCCCCCCH---------------HHh------------------------------------cCCCeEEEE-
Confidence 3348999999999971 455 277889986
Q ss_pred cCChhhHHHHHHHHHHHHHhhccHHHHHHhhcCCCCCCCe--EEEecchhccccCCCCCcccCCCCCCCCCCHHHHHHHH
Q psy12805 975 LELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQF--VKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELI 1052 (1429)
Q Consensus 975 ~~~~~~~~~l~~~~~~~~~~t~s~~a~~~l~~~~~~~~~f--~kV~p~ia~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1052 (1429)
++|+ +||++++++ .||+|+||++|+++||+++|||||||||||+|||+++|
T Consensus 142 ------------------------igQG---AKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I 194 (368)
T PF01645_consen 142 ------------------------IGQG---AKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLI 194 (368)
T ss_dssp ---------------------------T---TSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHH
T ss_pred ------------------------EecC---ccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHH
Confidence 9999 999999998 99999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCceeEEEeeeccccceeccccceecceEecC
Q psy12805 1053 YDLKCANPNARISVKLVSEVGVGVVASGVAKSIVSFEILP 1092 (1429)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~gv~~~a~g~ak~~~~~~~~~ 1092 (1429)
++||+++|++||+||+++..++++++++++|+.+||...+
T Consensus 195 ~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItID 234 (368)
T PF01645_consen 195 EELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITID 234 (368)
T ss_dssp HHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEe
Confidence 9999999999999999999999999999999999998877
No 24
>cd00980 FwdC/FmdC FwdC/FmdC. This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif.
Probab=99.89 E-value=1.3e-23 Score=227.09 Aligned_cols=155 Identities=23% Similarity=0.335 Sum_probs=128.7
Q ss_pred EEEEEeCCcc--chhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCC
Q psy12805 799 INLKLTGSAG--QSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFE 876 (1429)
Q Consensus 799 i~i~~~g~aG--~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~ 876 (1429)
-+|.+.|... -.+|+-|+.| +|+|+||+++|+|..|++|. |+|+|++++++|.+|+||+|+|+.+......
T Consensus 19 ~~i~i~g~~~r~~~iG~~m~~g-~I~v~G~~g~~~G~~M~gG~------I~V~G~ag~~~G~~m~GG~I~V~GnAg~~~G 91 (203)
T cd00980 19 TKLVIEGDVPRLKRIGARMTAG-EIVVEGDVGMYVGAGMKGGK------LVVEGNAGSWAGCEMKGGEITIKGNAGDYVG 91 (203)
T ss_pred ceEEEECCcchhchhhcCcCcC-EEEEEeCCchHhhCcCcCCE------EEEECCCCchHhccCCCcEEEEEcccccccc
Confidence 3567777777 6788886664 78899999988876666665 9999999999999999999999855443322
Q ss_pred CCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCCCcccccccccEEEEe
Q psy12805 877 SDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVL 955 (1429)
Q Consensus 877 ~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~ 955 (1429)
.. ..|+ .+||+||+|+|+|+||.|+|.+|++++++|+| +|+++|+||.+|+|+|+|++|.++|++|.+|+|||+
T Consensus 92 ~~---~~G~--~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~~M~~Gtivv~ 166 (203)
T cd00980 92 SA---YRGD--WRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAHPGYEMKRGTIVIG 166 (203)
T ss_pred ce---eecc--cccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCccccCcCcceEEEEe
Confidence 21 1122 35899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCchhccc
Q psy12805 956 DVDGSFAKKC 965 (1429)
Q Consensus 956 ~~~~~f~~~~ 965 (1429)
.....+.+.+
T Consensus 167 g~~~~~~P~f 176 (203)
T cd00980 167 GEIEELLPTF 176 (203)
T ss_pred CCCcccCCce
Confidence 9877666544
No 25
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.86 E-value=8.4e-22 Score=230.36 Aligned_cols=278 Identities=22% Similarity=0.204 Sum_probs=195.3
Q ss_pred CCCCcccc-----cccceeeCCCCCc---c-chHHHHHHHHHHHHHhCCcEEecCCCCCccccccCC-Ccccccceeecc
Q psy12805 372 SEVEPAAE-----IVKRFATGAMSFG---S-ISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSG-DENQRSAIKQVA 441 (1429)
Q Consensus 372 ~~v~~~~~-----i~~pf~i~aMS~G---s-lS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~-~~~~~~~I~Q~a 441 (1429)
++++..++ +..||+|++|++| . ..+.++..+|.++...++.|..|.... +...... -....+..++++
T Consensus 50 ~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~i--e~~~~~~~~q~y~~~~R~~~ 127 (360)
T COG1304 50 DDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRI--EEVAAAPPFQLYFSKDREFA 127 (360)
T ss_pred ccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcH--HHhhcCcchhhhhHHHHHhh
Confidence 35555555 6699999999999 3 788999999999999999999997754 1111100 001111222332
Q ss_pred cCCCCCChhhhccccchhhhcccCCCCCCCCCcccccch--HHHHhccCCCCccccccCCCCCCCCCHH-HHHHHH----
Q psy12805 442 SGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT--KDIASTRHSVPGVGLISPPPHHDIYSIE-DLAELI---- 514 (1429)
Q Consensus 442 sgrfGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~--~~iA~~r~~~pg~~LisP~~h~di~sie-dL~qlI---- 514 (1429)
+.. .....|+++.|+...-..- .+|+-.-.+++ ..-+.+.|.|+.|++.+|+++.+++... .+.+..
T Consensus 128 ~~~----~~~a~n~G~~~lv~t~d~~--~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~ 201 (360)
T COG1304 128 PNL----VDRAANAGAKQLVLTVDSP--VGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALS 201 (360)
T ss_pred HHH----HHHHHhcCCcceeeccCcc--chHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcC
Confidence 211 1134577777776531111 12221111111 1225688999999999999999988654 233332
Q ss_pred ---------HHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 515 ---------YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 515 ---------~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+.+++.+ ..|+.+|-+ -....+.++.+.|+|.|.+|.|+|. ..+||+|+..+|.++...
T Consensus 202 ~P~i~ked~~~i~~~~-~~~lv~kGV---~~~~D~~~a~~tg~~~I~vsnhggr--------qlD~g~st~~~L~ei~~a 269 (360)
T COG1304 202 VPVISKEDGAGISKEW-AGPLVLKGI---LAPEDAAGAGGTGADGIEVSNHGGR--------QLDWGISTADSLPEIVEA 269 (360)
T ss_pred CCcccHHHHhHHHHhc-CCcHHHhCC---CCHHHHHhhccCCceEEEEEcCCCc--------cccCCCChHHHHHHHHHH
Confidence 2333333 344444411 1112456677889999999999764 679999999999999988
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v 665 (1429)
+ .++++|++|||||+|.|++||++|||++|++|+++|.++. .++.++|
T Consensus 270 v-----~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~---------------------------~~g~~GV 317 (360)
T COG1304 270 V-----GDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLA---------------------------AGGEAGV 317 (360)
T ss_pred h-----CCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHH---------------------------hccHHHH
Confidence 6 3469999999999999999999999999999999988875 4667889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccccC
Q psy12805 666 INYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702 (1429)
Q Consensus 666 ~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~ 702 (1429)
.+.++.+.+||+..|..+|++||+|| .++.++....
T Consensus 318 ~~~le~~~~El~~~M~L~G~~~i~el-~~~~l~~~~~ 353 (360)
T COG1304 318 ERVLEIIRKELKIAMALTGAKNIEEL-KRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHh-ccCceeeccc
Confidence 99999999999999999999999997 7777665544
No 26
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.84 E-value=6.2e-21 Score=224.22 Aligned_cols=270 Identities=23% Similarity=0.277 Sum_probs=168.1
Q ss_pred CCCCCCCcccc-----cccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeeccc
Q psy12805 369 VDISEVEPAAE-----IVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVAS 442 (1429)
Q Consensus 369 i~~~~v~~~~~-----i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~as 442 (1429)
.+++++|+.++ +..||+|++|+++. ..++.+.+||+||++.|+++.+|.+...+.+-... ........|+..
T Consensus 41 ~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~--~~~~~~~~Qly~ 118 (356)
T PF01070_consen 41 RDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAA--ASGGPLWFQLYP 118 (356)
T ss_dssp SBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHH--HCTSEEEEEEEG
T ss_pred CCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHh--hccCCeEEEEEE
Confidence 44556666666 56999999999985 56899999999999999999999876543321100 000122344422
Q ss_pred CC-CCCChhhhcc-----ccchhhhcc---------------------------cCC-CCCCCCCcccccchHHHHhccC
Q psy12805 443 GR-FGVTSSYLAH-----ADDLQIKMA---------------------------QGA-KPGEGGELPGYKVTKDIASTRH 488 (1429)
Q Consensus 443 gr-fGv~~~~L~~-----a~~ieIk~g---------------------------QGA-KpG~GG~lpg~KV~~~iA~~r~ 488 (1429)
-+ -....+.+.. ++++.|.+- +++ +|..+ . +..+-.+......+
T Consensus 119 ~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~-~-~~~~~~~~~~~~~~ 196 (356)
T PF01070_consen 119 PRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSG-M-PRLENNEAPPPGDN 196 (356)
T ss_dssp BSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TT-T-GG-----CSSSSTS
T ss_pred ecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccc-c-ccccccccccCCCc
Confidence 11 1111111111 222222210 000 11000 0 00000000000000
Q ss_pred CCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccc
Q psy12805 489 SVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGI 568 (1429)
Q Consensus 489 ~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~ 568 (1429)
............+++ .++++ |+.+++.+ +.||+||-+ =-...|..+.++|+|.|+||||+|. .
T Consensus 197 ~~~~~~~~~~~~~~~-~~w~~----i~~~~~~~-~~pvivKgv---~~~~da~~~~~~G~~~i~vs~hGGr--------~ 259 (356)
T PF01070_consen 197 GAAAARFVGSQFDPS-LTWDD----IEWIRKQW-KLPVIVKGV---LSPEDAKRAVDAGVDGIDVSNHGGR--------Q 259 (356)
T ss_dssp TCHHHHHHHCHB-TT--SHHH----HHHHHHHC-SSEEEEEEE----SHHHHHHHHHTT-SEEEEESGTGT--------S
T ss_pred chhHHHHHHHhcCCC-CCHHH----HHHHhccc-CCceEEEec---ccHHHHHHHHhcCCCEEEecCCCcc--------c
Confidence 001111222222333 34444 55666665 899999944 3445678899999999999999665 3
Q ss_pred cccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccce
Q psy12805 569 KNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIA 648 (1429)
Q Consensus 569 ~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~gia 648 (1429)
.+||+|++.+|.++.+.+ ..+++|++|||||+|.||+||++|||++|++|+++|.++.
T Consensus 260 ~d~~~~~~~~L~~i~~~~-----~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~----------------- 317 (356)
T PF01070_consen 260 LDWGPPTIDALPEIRAAV-----GDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALA----------------- 317 (356)
T ss_dssp STTS-BHHHHHHHHHHHH-----TTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHH-----------------
T ss_pred CccccccccccHHHHhhh-----cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHH-----------------
Confidence 589999999999999976 2579999999999999999999999999999999998774
Q ss_pred ecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 649 TQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 649 tqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
..+.++|.++++.+.+||+..|..+|+++++||
T Consensus 318 ----------~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l 350 (356)
T PF01070_consen 318 ----------AGGEEGVERVLEILKEELKRAMFLLGARSIAEL 350 (356)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGH
T ss_pred ----------HhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 245799999999999999999999999999997
No 27
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.83 E-value=6.4e-20 Score=214.60 Aligned_cols=258 Identities=19% Similarity=0.162 Sum_probs=168.7
Q ss_pred ccccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCCCCc-cccccCCCcccccceeecccCC-CCCChhhhcc-
Q psy12805 379 EIVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGENP-ERYLSSGDENQRSAIKQVASGR-FGVTSSYLAH- 454 (1429)
Q Consensus 379 ~i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg~~~-~~~~~~~~~~~~~~I~Q~asgr-fGv~~~~L~~- 454 (1429)
++..||+|++|++-. ..++.-.++|+||.+.|+.+..+.....+ +......... .....|+...+ -..+.+.+..
T Consensus 62 ~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~-~~~w~Qly~~~d~~~~~~l~~ra 140 (344)
T cd02922 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPD-QPLFFQLYVNKDRTKTEELLKRA 140 (344)
T ss_pred ccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCC-CcEEEEEeecCCHHHHHHHHHHH
Confidence 367999999998654 35778899999999999999999765322 2211110000 12234543211 1122222322
Q ss_pred ----ccchhhhcccCCCCCCCCCcccccchHHHHhccC--CCCccccccCC---------CCCC---CCCHHHHHHHHHH
Q psy12805 455 ----ADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRH--SVPGVGLISPP---------PHHD---IYSIEDLAELIYD 516 (1429)
Q Consensus 455 ----a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~--~~pg~~LisP~---------~h~d---i~siedL~qlI~~ 516 (1429)
+++|-|.+. -|..| . ....+|+ ..|- .+-.|+ .... ..+.....+.|++
T Consensus 141 ~~ag~~alvltvD---~p~~g-----~----r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (344)
T cd02922 141 EKLGAKAIFLTVD---APVLG-----K----RERDERLKAEEAV-SDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKW 207 (344)
T ss_pred HHcCCCEEEEECC---CCCcC-----c----chhhhhhcCCcCc-cccccccccccccchHHHHHhhccCCCCCHHHHHH
Confidence 223333221 01000 0 0000110 0000 000000 0000 0001112344667
Q ss_pred HHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceE
Q psy12805 517 LKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVV 596 (1429)
Q Consensus 517 Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~ 596 (1429)
||+.+ +.||+|| +++....|..+.++|+|.|+|+||+|.. ++ ..+|++.+|.++++.+...+ ++++
T Consensus 208 l~~~~-~~PvivK---gv~~~~dA~~a~~~G~d~I~vsnhgG~~-------~d-~~~~~~~~L~~i~~~~~~~~--~~~~ 273 (344)
T cd02922 208 LRKHT-KLPIVLK---GVQTVEDAVLAAEYGVDGIVLSNHGGRQ-------LD-TAPAPIEVLLEIRKHCPEVF--DKIE 273 (344)
T ss_pred HHHhc-CCcEEEE---cCCCHHHHHHHHHcCCCEEEEECCCccc-------CC-CCCCHHHHHHHHHHHHHHhC--CCce
Confidence 77766 7899999 5567778888999999999999997542 33 46788899999998775554 3699
Q ss_pred EEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy12805 597 LQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 676 (1429)
Q Consensus 597 LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eL 676 (1429)
||+|||||+|.||+||++|||++|++|+++|.++.| ++.+.|.++++.+.+||
T Consensus 274 vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~---------------------------~G~~gv~~~l~~l~~EL 326 (344)
T cd02922 274 VYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSA---------------------------YGEEGVEKAIQILKDEI 326 (344)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhh---------------------------ccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998763 46799999999999999
Q ss_pred HHHHHhcCCCChhhh
Q psy12805 677 RTHMAKLGIRKFADL 691 (1429)
Q Consensus 677 r~iMa~mGi~sl~El 691 (1429)
+.+|..+|+++++||
T Consensus 327 ~~~m~l~G~~~i~~l 341 (344)
T cd02922 327 ETTMRLLGVTSLDQL 341 (344)
T ss_pred HHHHHHhCCCCHHHh
Confidence 999999999999997
No 28
>KOG0405|consensus
Probab=99.83 E-value=2.3e-20 Score=210.22 Aligned_cols=211 Identities=17% Similarity=0.100 Sum_probs=163.1
Q ss_pred cccccccccCccceecccccc-c----ceEEEccCCCCCcC---CccCccchHHHHhhccCCCceEEEccccccccHHHH
Q psy12805 1188 KDIEDVMGADKKKVDRSIDKT-R----GFIKYSRETAPYRP---AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFC 1259 (1429)
Q Consensus 1188 ~die~~i~~~~k~~~~~~~k~-~----gf~kiAtGs~P~~p---~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c 1259 (1429)
+..++.+...++..+++.+.+ . .++.||+|++|..| ..+.-.|+|.++++...|++++|+|+|||++|+|..
T Consensus 128 i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi 207 (478)
T KOG0405|consen 128 IEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGI 207 (478)
T ss_pred EeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhH
Confidence 444444444443344444332 2 34889999999887 345568999999999999999999999999999999
Q ss_pred HHhCCCCccccccccchh-hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEec
Q psy12805 1260 QSSHGCPLGNIIPKWNDL-IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAM 1336 (1429)
Q Consensus 1260 ~s~~Gc~V~~iLp~~d~l-vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAi 1336 (1429)
++.+||+++.+|++...+ -|.+.+++.+.+.++..| ++....+.++.. ..+|........+ ....+|.|+||+
T Consensus 208 ~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K--~~~g~~~~i~~~~--~i~~vd~llwAi 283 (478)
T KOG0405|consen 208 FAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIK--TDDGLELVITSHG--TIEDVDTLLWAI 283 (478)
T ss_pred HhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeee--cCCCceEEEEecc--ccccccEEEEEe
Confidence 999999996555543222 344489999999999888 455555566643 3455433333334 234589999999
Q ss_pred cccCchhhh-hhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy12805 1337 GFLGPERYI-ANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1337 G~~pp~~~L-le~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
|+.|+...| +++.|+++|++|.|+||+ +.+||+|+|||.||+++...+...|+++||..|..+...
T Consensus 284 GR~Pntk~L~le~vGVk~~~~g~IivDe-Yq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 284 GRKPNTKGLNLENVGVKTDKNGAIIVDE-YQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred cCCCCcccccchhcceeeCCCCCEEEec-cccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcC
Confidence 999888888 999999999999999997 899999999999999999999999999999988766543
No 29
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.83 E-value=1.7e-19 Score=208.22 Aligned_cols=236 Identities=20% Similarity=0.204 Sum_probs=166.8
Q ss_pred CCCCCccccc-----ccceeeCCCCCccc-hHHHHHHHHHHHHHhCCcEEecCCC-CCccccccCCCcccccceeecccC
Q psy12805 371 ISEVEPAAEI-----VKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGG-ENPERYLSSGDENQRSAIKQVASG 443 (1429)
Q Consensus 371 ~~~v~~~~~i-----~~pf~i~aMS~Gsl-S~ea~~aLA~aa~~~G~~~~tGEGg-~~~~~~~~~~~~~~~~~I~Q~asg 443 (1429)
+++||+.++| ..||+|++|++++. +.+++..||++++++|+.++.|+.. .+++..... .+ .-...|+...
T Consensus 49 ~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~-~~--~~~~~ql~~~ 125 (299)
T cd02809 49 VSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAA-AP--GPRWFQLYVP 125 (299)
T ss_pred CCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHh-cC--CCeEEEEeec
Confidence 4556665554 68999999998886 8999999999999999999988743 444432111 00 2233444221
Q ss_pred -CCCCChhhh-----ccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHH
Q psy12805 444 -RFGVTSSYL-----AHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDL 517 (1429)
Q Consensus 444 -rfGv~~~~L-----~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~L 517 (1429)
......+.+ ..++.|+|.++ +- . ++.+ ..+ +.|+.+
T Consensus 126 ~~~~~~~~~i~~~~~~g~~~i~l~~~---------------------------~p----~-~~~~--~~~----~~i~~l 167 (299)
T cd02809 126 RDREITEDLLRRAEAAGYKALVLTVD---------------------------TP----V-LGRR--LTW----DDLAWL 167 (299)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC---------------------------CC----C-CCCC--CCH----HHHHHH
Confidence 000001111 01222222221 00 0 0111 233 467777
Q ss_pred HHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEE
Q psy12805 518 KCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVL 597 (1429)
Q Consensus 518 k~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~L 597 (1429)
|+.+ +.||+||.+ .....|..+.++|+|.|+++|++|. ..++|+|+...|.++.+.+ ..+++|
T Consensus 168 ~~~~-~~pvivK~v---~s~~~a~~a~~~G~d~I~v~~~gG~--------~~~~g~~~~~~l~~i~~~~-----~~~ipv 230 (299)
T cd02809 168 RSQW-KGPLILKGI---LTPEDALRAVDAGADGIVVSNHGGR--------QLDGAPATIDALPEIVAAV-----GGRIEV 230 (299)
T ss_pred HHhc-CCCEEEeec---CCHHHHHHHHHCCCCEEEEcCCCCC--------CCCCCcCHHHHHHHHHHHh-----cCCCeE
Confidence 7776 589999954 3345678899999999999998653 3368999999999998765 236999
Q ss_pred EEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHHH
Q psy12805 598 QADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVR 677 (1429)
Q Consensus 598 iasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr 677 (1429)
|++|||+++.|++|++++|||+|++|++++.++. .++.+.+.++++.+.+||+
T Consensus 231 ia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~---------------------------~~g~~~v~~~i~~l~~el~ 283 (299)
T cd02809 231 LLDGGIRRGTDVLKALALGADAVLIGRPFLYGLA---------------------------AGGEAGVAHVLEILRDELE 283 (299)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHH---------------------------hcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887664 1356899999999999999
Q ss_pred HHHHhcCCCChhhh
Q psy12805 678 THMAKLGIRKFADL 691 (1429)
Q Consensus 678 ~iMa~mGi~sl~El 691 (1429)
.+|..+|+++++|+
T Consensus 284 ~~m~~~G~~~i~~l 297 (299)
T cd02809 284 RAMALLGCASLADL 297 (299)
T ss_pred HHHHHHCCCCHHHh
Confidence 99999999999997
No 30
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.81 E-value=4.3e-19 Score=207.76 Aligned_cols=259 Identities=19% Similarity=0.203 Sum_probs=175.7
Q ss_pred cccceeeCCCCCccc-hHHHHHHHHHHHHHhCCcEE-ecCCCCCccccccCCCcccccceeecccCCCCCChhhhccccc
Q psy12805 380 IVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSN-TGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADD 457 (1429)
Q Consensus 380 i~~pf~i~aMS~Gsl-S~ea~~aLA~aa~~~G~~~~-tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv~~~~L~~a~~ 457 (1429)
+..||+|+.|++..+ .++.-.++|+||.+.|++++ |..+..+.|+..... .....+++.+......++.+.|..+++
T Consensus 71 ~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~-~~~~~wfQlY~~~d~~~~~~ll~rA~~ 149 (351)
T cd04737 71 LKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKAS-NGGPKWFQLYMSKDDGFNRSLLDRAKA 149 (351)
T ss_pred ccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhc-CCCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 679999999999975 45888999999999999998 455555556543211 011234444555556666666665543
Q ss_pred h---hhhcccCCCCCCCCCcccccchHHHHhccCCC----------------CccccccCCCCCCCCCHHHHHHHHHHHH
Q psy12805 458 L---QIKMAQGAKPGEGGELPGYKVTKDIASTRHSV----------------PGVGLISPPPHHDIYSIEDLAELIYDLK 518 (1429)
Q Consensus 458 i---eIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~----------------pg~~LisP~~h~di~siedL~qlI~~Lk 518 (1429)
. .|.+.+.+-. .| +-..++..-...+ ++..-+++.-+++ .+++++ .+||
T Consensus 150 aG~~alvlTvD~p~-~g------~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l----~~lr 217 (351)
T cd04737 150 AGAKAIILTADATV-GG------NREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQK-LSPADI----EFIA 217 (351)
T ss_pred cCCCEEEEecCCCC-CC------cchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCC-CCHHHH----HHHH
Confidence 3 4444444311 00 1111111100000 0111111111112 255554 5666
Q ss_pred HhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEE
Q psy12805 519 CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQ 598 (1429)
Q Consensus 519 ~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Li 598 (1429)
+.+ +.||+||. +.....|..+.++|+|.|+||||+|.. + +-+.+.+..|.++.+.+ +.+++|+
T Consensus 218 ~~~-~~PvivKg---v~~~~dA~~a~~~G~d~I~vsnhGGr~-------l-d~~~~~~~~l~~i~~a~-----~~~i~vi 280 (351)
T cd04737 218 KIS-GLPVIVKG---IQSPEDADVAINAGADGIWVSNHGGRQ-------L-DGGPASFDSLPEIAEAV-----NHRVPII 280 (351)
T ss_pred HHh-CCcEEEec---CCCHHHHHHHHHcCCCEEEEeCCCCcc-------C-CCCchHHHHHHHHHHHh-----CCCCeEE
Confidence 665 78999993 344567888999999999999997642 1 23455667778776664 3469999
Q ss_pred EcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q psy12805 599 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRT 678 (1429)
Q Consensus 599 asGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr~ 678 (1429)
++|||+++.|++||+++||++|++|++++.+++ .++.+.|.++++.+.+||+.
T Consensus 281 ~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la---------------------------~~G~~gv~~~l~~l~~El~~ 333 (351)
T cd04737 281 FDSGVRRGEHVFKALASGADAVAVGRPVLYGLA---------------------------LGGAQGVASVLEHLNKELKI 333 (351)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEECHHHHHHHh---------------------------hchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988775 35678999999999999999
Q ss_pred HHHhcCCCChhhhcCCCc
Q psy12805 679 HMAKLGIRKFADLVGRTD 696 (1429)
Q Consensus 679 iMa~mGi~sl~ElvGrsd 696 (1429)
.|..+|+++++|+ .+.+
T Consensus 334 ~m~l~G~~~i~el-~~~~ 350 (351)
T cd04737 334 VMQLAGTRTIEDV-KRTF 350 (351)
T ss_pred HHHHHCCCCHHHh-CCCC
Confidence 9999999999997 4443
No 31
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.80 E-value=1e-18 Score=213.86 Aligned_cols=182 Identities=17% Similarity=0.213 Sum_probs=149.1
Q ss_pred ceEEEccCCCCCcCCc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhC---CCCc------cccccccchh
Q psy12805 1210 GFIKYSRETAPYRPAE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSH---GCPL------GNIIPKWNDL 1277 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~---Gc~V------~~iLp~~d~l 1277 (1429)
.++.+|||+.|..|+. +.+.++++++.+...|++++|+|+|++|||++..++.+ |++| ++++|.+++
T Consensus 153 d~lIIATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~- 231 (486)
T TIGR01423 153 EHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDS- 231 (486)
T ss_pred CEEEEecCCCCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCH-
Confidence 3488999999987742 34678888888777899999999999999999888765 8888 566777776
Q ss_pred hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1278 IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++| +.++..+.+++.. +++.... ...+ .+++++|.||+|+|++|+...+ ++++|++++
T Consensus 232 ----~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v-~~~~-g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~ 303 (486)
T TIGR01423 232 ----TLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHV-TFES-GKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303 (486)
T ss_pred ----HHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEE-EEcC-CCEEEcCEEEEeeCCCcCcccCCchhhCceEC
Confidence 89999999999988 5668888888542 2332222 2222 2379999999999999665554 688999999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|+|.||+ +++||+|+|||+|||+..+++++.|+.||+.||.+|.
T Consensus 304 ~~G~I~Vd~-~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 304 KKGAIQVDE-FSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred CCCCEecCC-CCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHh
Confidence 999999997 8899999999999999999999999999999999985
No 32
>KOG1335|consensus
Probab=99.78 E-value=6.8e-19 Score=200.67 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=158.8
Q ss_pred eEEEccCC-CCCcC----CccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhc
Q psy12805 1211 FIKYSRET-APYRP----AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIY 1279 (1429)
Q Consensus 1211 f~kiAtGs-~P~~p----~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf 1279 (1429)
++.||||| .+.-| +++.+.+++..+++...|+++.|+|+|+||+|+....+++|.+| +.+.+.+|.
T Consensus 176 nIiiATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~--- 252 (506)
T KOG1335|consen 176 NIIIATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDG--- 252 (506)
T ss_pred eEEEEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCH---
Confidence 57899998 44555 78889999999999999999999999999999999999999999 666677776
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEE---eCCCeeEEEecEEEEeccccCchhhh-hhccCccc
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDE---VPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTL 1353 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~---~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLel 1353 (1429)
+++++.++.|+..+ |.+++++...+. +.+|.+.... ..+..++++||.+++++|++|-...| +++.|++.
T Consensus 253 --Eisk~~qr~L~kQgikF~l~tkv~~a~~--~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~ 328 (506)
T KOG1335|consen 253 --EISKAFQRVLQKQGIKFKLGTKVTSATR--NGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIEL 328 (506)
T ss_pred --HHHHHHHHHHHhcCceeEeccEEEEeec--cCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhccccc
Confidence 99999999999998 666788777755 3455544332 23556799999999999999888889 99999999
Q ss_pred cCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1354 DPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1354 d~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
|++|++.+|. .++|.+|+||++|||+.+|++++.|..||..|.+.|.
T Consensus 329 D~r~rv~v~~-~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 329 DKRGRVIVNT-RFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIA 375 (506)
T ss_pred ccccceeccc-cccccCCceEEecccCCcchhhhhhhhhchhheeeec
Confidence 9999999997 8999999999999999999999999999999877764
No 33
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.78 E-value=3.3e-18 Score=207.75 Aligned_cols=182 Identities=20% Similarity=0.229 Sum_probs=149.5
Q ss_pred eEEEccCCCCCcC-Cc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhcc
Q psy12805 1211 FIKYSRETAPYRP-AE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1211 f~kiAtGs~P~~p-~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~ 1280 (1429)
++.+|||+.|..| .. +...++++++.+...|++++|+|+|+++||++..++.+|++| +++++.+++
T Consensus 132 ~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~---- 207 (450)
T TIGR01421 132 HILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDS---- 207 (450)
T ss_pred EEEEecCCCCCCCCCCCCCceeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCH----
Confidence 4889999999877 32 223578888888778999999999999999999999999999 445666665
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++.+.+.+.|+++| +..+..+++++.. .++... +..++..+.++||.||+++|++|+...| ++.+|++++++|
T Consensus 208 -~~~~~~~~~l~~~gI~i~~~~~v~~i~~~--~~~~~~-v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G 283 (450)
T TIGR01421 208 -MISETITEEYEKEGINVHKLSKPVKVEKT--VEGKLV-IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKG 283 (450)
T ss_pred -HHHHHHHHHHHHcCCEEEcCCEEEEEEEe--CCceEE-EEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCC
Confidence 88999999999988 5668888888642 233222 2333333579999999999999655544 788999999999
Q ss_pred CEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|.||+ +++|++|+|||+|||+..+.+++.|+.||+.||.+|.
T Consensus 284 ~i~vd~-~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 284 QIIVDE-YQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLF 326 (450)
T ss_pred cEEeCC-CCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 999997 7999999999999999999999999999999999985
No 34
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.78 E-value=4e-18 Score=207.36 Aligned_cols=184 Identities=20% Similarity=0.223 Sum_probs=149.8
Q ss_pred ceEEEccCCCCCcCCc-----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPAE-----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~-----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+. ..+.+++++++....|++++|+|+|++++|++..++..|++| ++++|.+++
T Consensus 130 ~~lIiATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~-- 207 (463)
T TIGR02053 130 KRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEP-- 207 (463)
T ss_pred CEEEEcCCCCCCCCCCCCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCH--
Confidence 4488999999987732 236778888877677899999999999999999999999998 456666665
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEE-EeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMD-EVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v-~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.++++| +..+.++.+++.. ++..... ..+++.+++++|.||+|+|++|+...| ++.+|++++
T Consensus 208 ---~~~~~l~~~l~~~gV~i~~~~~V~~i~~~---~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~ 281 (463)
T TIGR02053 208 ---EISAAVEEALAEEGIEVVTSAQVKAVSVR---GGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLD 281 (463)
T ss_pred ---HHHHHHHHHHHHcCCEEEcCcEEEEEEEc---CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEEC
Confidence 88889999999888 4567778887542 2222222 223445689999999999999665546 888999999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
++|+|.||+ +++||+|+|||+|||+..+.+++.|+.||+.||.+|..
T Consensus 282 ~~G~i~vd~-~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 282 ERGGILVDE-TLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CCCcEeECC-CccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcC
Confidence 999999997 89999999999999999999999999999999999963
No 35
>cd00980 FwdC/FmdC FwdC/FmdC. This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif.
Probab=99.77 E-value=3.9e-19 Score=192.62 Aligned_cols=127 Identities=27% Similarity=0.404 Sum_probs=117.6
Q ss_pred CCeeEeecCCcc--cccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCCccceeccccccccccC
Q psy12805 817 RGVHVTLEGDAN--DYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG 894 (1429)
Q Consensus 817 ~G~~i~v~g~~~--~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG 894 (1429)
...+|.++||.. .|+|..|..|. |+|+|+++||+|++|+||+|+|+ +.+|+.+.++|+||
T Consensus 17 ~~~~i~i~g~~~r~~~iG~~m~~g~------I~v~G~~g~~~G~~M~gG~I~V~------------G~ag~~~G~~m~GG 78 (203)
T cd00980 17 ADTKLVIEGDVPRLKRIGARMTAGE------IVVEGDVGMYVGAGMKGGKLVVE------------GNAGSWAGCEMKGG 78 (203)
T ss_pred CCceEEEECCcchhchhhcCcCcCE------EEEEeCCchHhhCcCcCCEEEEE------------CCCCchHhccCCCc
Confidence 345799999999 89988888777 99999999999999999999998 55677889999999
Q ss_pred ceeEecccCcceeee-------ecCceEEEcc-cCccccccccCceEEEeCCCCCcccccccccEEEEecCCCch
Q psy12805 895 KAFFRGIAAERFSVR-------NSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSF 961 (1429)
Q Consensus 895 ~~~i~g~ag~Rfgvr-------~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f 961 (1429)
+|+|+|+|++++|.. |+||+++|+| +|+++|++|+||+|+|.|++|.++|..|.+|+|+|...-+.+
T Consensus 79 ~I~V~GnAg~~~G~~~~G~~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~ 153 (203)
T cd00980 79 EITIKGNAGDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAH 153 (203)
T ss_pred EEEEEccccccccceeecccccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCcc
Confidence 999999999999996 9999999999 999999999999999999999999999999999999876655
No 36
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.77 E-value=6e-18 Score=207.24 Aligned_cols=184 Identities=18% Similarity=0.207 Sum_probs=146.5
Q ss_pred ceEEEccCCCCCcCCc----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc-----cccccccchhhcc
Q psy12805 1210 GFIKYSRETAPYRPAE----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL-----GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V-----~~iLp~~d~lvf~ 1280 (1429)
.++.+|||+.|..|+. +...++++++.+...|++++|+|+|+++||++..++.+|++| ..++|.+++
T Consensus 145 d~lVIATGs~p~~p~ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~---- 220 (484)
T TIGR01438 145 ERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ---- 220 (484)
T ss_pred CEEEEecCCCCCCCCCCCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCH----
Confidence 3488999999987743 234688899988888999999999999999999999999999 344555555
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCC-eeEEEecEEEEeccccCchhhh-hhccCccccC-
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNS-EKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP- 1355 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gs-e~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~- 1355 (1429)
++++.+.+.|+++| +.++..+.+++.. ++.......+++ .+++++|.||+|+|++|+...| ++++|+++++
T Consensus 221 -~~~~~l~~~L~~~gV~i~~~~~v~~v~~~---~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~ 296 (484)
T TIGR01438 221 -DCANKVGEHMEEHGVKFKRQFVPIKVEQI---EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKK 296 (484)
T ss_pred -HHHHHHHHHHHHcCCEEEeCceEEEEEEc---CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCc
Confidence 88999999999988 4567777777542 222222222332 3479999999999999655444 6889999985
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+|+|.||+ +++||+|+|||+|||+. .+.+.+.|+.||+.||++|..
T Consensus 297 ~G~I~Vd~-~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 297 TGKIPADE-EEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CCeEecCC-CcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 48999997 89999999999999986 678999999999999999863
No 37
>PLN02979 glycolate oxidase
Probab=99.77 E-value=2.2e-18 Score=200.33 Aligned_cols=279 Identities=20% Similarity=0.205 Sum_probs=177.9
Q ss_pred cccccccccCCCCCCCCCCCcccc-----cccceeeCCCCCcc-chHHHHHHHHHHHHHhCCcEEecCCCC-CccccccC
Q psy12805 356 LRGQLDFVTHDKPVDISEVEPAAE-----IVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGE-NPERYLSS 428 (1429)
Q Consensus 356 lr~~l~~~~~~~~i~~~~v~~~~~-----i~~pf~i~aMS~Gs-lS~ea~~aLA~aa~~~G~~~~tGEGg~-~~~~~~~~ 428 (1429)
|-+.+.|++ +--.+.+++++.++ +..||+|+.|.+-. ..++.-.++|+||.+.|+++..+.... +.|+....
T Consensus 40 ~~~~~~lrP-RvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 40 LGGFCDFRP-RILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred hCCeeEEEC-ccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 556666653 23445666666666 56999999998875 467788899999999999998875322 22222110
Q ss_pred CCcccccceeeccc-CCCCCChhhhccccc-----hhhhcccCCCCCC---------CCCcccccch-HHHHhccCCCCc
Q psy12805 429 GDENQRSAIKQVAS-GRFGVTSSYLAHADD-----LQIKMAQGAKPGE---------GGELPGYKVT-KDIASTRHSVPG 492 (1429)
Q Consensus 429 ~~~~~~~~I~Q~as-grfGv~~~~L~~a~~-----ieIk~gQGAKpG~---------GG~lpg~KV~-~~iA~~r~~~pg 492 (1429)
. ......|..- .--..+.+.|..|.+ |-+.+- -|.. |-.+|. +++ ......+..++.
T Consensus 119 -~--~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD---~pv~G~R~rd~rn~~~~p~-~~~~~~~~~~~~~~~~ 191 (366)
T PLN02979 119 -G--PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVD---TPRLGRRESDIKNRFTLPP-NLTLKNFEGLDLGKMD 191 (366)
T ss_pred -c--CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEec---CCCCCCchhhhccCCCCCc-ccchhhhhhccccCCC
Confidence 0 0122233321 111122222222211 111100 0000 001111 110 000000100000
Q ss_pred c------c-cccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCcccc
Q psy12805 493 V------G-LISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW 565 (1429)
Q Consensus 493 ~------~-LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~ 565 (1429)
. . ...-..++ -.+++| |++||+.+ +.||+|| ++.....|..+.++|+|.|+||||+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~-~ltW~d----l~wlr~~~-~~PvivK---gV~~~~dA~~a~~~Gvd~I~VsnhGGrq----- 257 (366)
T PLN02979 192 EANDSGLASYVAGQIDR-TLSWKD----VQWLQTIT-KLPILVK---GVLTGEDARIAIQAGAAGIIVSNHGARQ----- 257 (366)
T ss_pred cccchhHHHHHhhcCCC-CCCHHH----HHHHHhcc-CCCEEee---cCCCHHHHHHHHhcCCCEEEECCCCcCC-----
Confidence 0 0 00000011 135666 56777776 7999999 5566778889999999999999997652
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCc
Q psy12805 566 TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPV 645 (1429)
Q Consensus 566 ~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~ 645 (1429)
.++++|++.+|.++.+.+ ..+++|++|||||+|.||+||++|||++|++|+++|.++.
T Consensus 258 ---ld~~p~t~~~L~ei~~~~-----~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la-------------- 315 (366)
T PLN02979 258 ---LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLA-------------- 315 (366)
T ss_pred ---CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH--------------
Confidence 356778999999998765 2469999999999999999999999999999999998764
Q ss_pred cceecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 646 GIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 646 giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
.++.+.|.++++.+.+||+..|+.+|+++++|+
T Consensus 316 -------------~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el 348 (366)
T PLN02979 316 -------------AEGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 348 (366)
T ss_pred -------------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 356788999999999999999999999999997
No 38
>TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C. Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme.
Probab=99.77 E-value=6.3e-19 Score=197.15 Aligned_cols=132 Identities=25% Similarity=0.418 Sum_probs=118.9
Q ss_pred cccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEeccccccccc-------ccC
Q psy12805 789 TKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGK-------GLS 861 (1429)
Q Consensus 789 ~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgk-------gms 861 (1429)
|-..+++.. +|.++|++||++|++|+.| +|+|+|||++|+|.+|.+|. |+|+|||+|++|. +|+
T Consensus 73 ~IG~~m~~g--~I~v~G~~G~~~G~~M~gG-~I~V~G~ag~~~G~~m~GG~------I~V~GnAg~~~G~~~~G~~~gM~ 143 (260)
T TIGR03122 73 RIGERMSAG--EIVVEGDVGMHVGAEMKGG-KIVVNGNADSWLGCEMKGGE------IEVKGNAGDYVGSAYRGEWRGMS 143 (260)
T ss_pred eeeCCCCCC--EEEEEccchhHHhccCCCC-EEEEEecCchhhhCcccCCE------EEEECCCcccccceeeccccccc
Confidence 434466655 5678999999999996655 99999999999988888777 9999999999995 899
Q ss_pred CceEEEeCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCC
Q psy12805 862 GGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTG 940 (1429)
Q Consensus 862 GG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g 940 (1429)
||+|+|+ +.+|+-+...|++|+++|.|++|.++|.+|.+|+++|.| +|.+.|..|.+|+|+|.|...
T Consensus 144 GG~I~V~------------GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~~M~~GtI~v~g~~~ 211 (260)
T TIGR03122 144 GGKIIVE------------GNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRRPGGEMKRGTIVVGGKPD 211 (260)
T ss_pred CCEEEEE------------echhHhhhhhccCcEEEEeeecccceeccccCCEEEEecccCcccccCCcceEEEEeCCcc
Confidence 9999998 777888888999999999999999999999999999999 999999999999999999986
Q ss_pred C
Q psy12805 941 R 941 (1429)
Q Consensus 941 ~ 941 (1429)
.
T Consensus 212 ~ 212 (260)
T TIGR03122 212 E 212 (260)
T ss_pred c
Confidence 4
No 39
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.77 E-value=1.2e-17 Score=195.80 Aligned_cols=138 Identities=26% Similarity=0.260 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+++| |++||+.+ +.||+|| ++.....|..+.++|+|.|+||||+|+ ..++++|++.+|.++.+.
T Consensus 212 tW~d----i~wlr~~~-~~PiivK---gV~~~~dA~~a~~~Gvd~I~VsnhGGr--------qld~~~~t~~~L~ei~~a 275 (367)
T PLN02493 212 SWKD----VQWLQTIT-KLPILVK---GVLTGEDARIAIQAGAAGIIVSNHGAR--------QLDYVPATISALEEVVKA 275 (367)
T ss_pred CHHH----HHHHHhcc-CCCEEee---cCCCHHHHHHHHHcCCCEEEECCCCCC--------CCCCchhHHHHHHHHHHH
Confidence 5666 56778776 7999999 556677888899999999999999775 235667899999999877
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v 665 (1429)
+ .++++|++|||||+|.||+||++|||++|++|+++|.++. .++.+.|
T Consensus 276 v-----~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~---------------------------~~G~~gv 323 (367)
T PLN02493 276 T-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLA---------------------------AEGEAGV 323 (367)
T ss_pred h-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH---------------------------hcCHHHH
Confidence 5 3469999999999999999999999999999999988764 3567889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 666 INYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 666 ~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
.++++.+.+|++..|..+|+++++|+
T Consensus 324 ~~~l~~l~~el~~~m~l~G~~~i~~l 349 (367)
T PLN02493 324 RKVLQMLRDEFELTMALSGCRSLKEI 349 (367)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 99999999999999999999999997
No 40
>PRK07846 mycothione reductase; Reviewed
Probab=99.76 E-value=1.2e-17 Score=202.99 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=144.2
Q ss_pred ceEEEccCCCCCcCCc-----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPAE-----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~-----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+. ..+.+++++.++...|++++|+|+|.++||++..++++|.+| +++++.++.
T Consensus 130 d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~-- 207 (451)
T PRK07846 130 DQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDD-- 207 (451)
T ss_pred CEEEEcCCCCCCCCCCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCH--
Confidence 3488999999987742 246788899888888999999999999999999999999998 455565555
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.++++ .+ +..+.++.+++.. ++.... ...+ +++++||.||+|+|++|+...+ ++++|+++++
T Consensus 208 ---~~~~~l~~l~~-~~v~i~~~~~v~~i~~~---~~~v~v-~~~~-g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~ 278 (451)
T PRK07846 208 ---DISERFTELAS-KRWDVRLGRNVVGVSQD---GSGVTL-RLDD-GSTVEADVLLVATGRVPNGDLLDAAAAGVDVDE 278 (451)
T ss_pred ---HHHHHHHHHHh-cCeEEEeCCEEEEEEEc---CCEEEE-EECC-CcEeecCEEEEEECCccCccccCchhcCceECC
Confidence 77777776654 44 4567777777542 223222 2232 3479999999999999554444 6789999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|+|.||+ +++||+|+|||+|||+..+++.+.|.+||+.+|.||.
T Consensus 279 ~G~i~Vd~-~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 279 DGRVVVDE-YQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLL 323 (451)
T ss_pred CCcEeECC-CcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHc
Confidence 99999997 8999999999999999999999999999999999996
No 41
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.76 E-value=1.1e-17 Score=203.22 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=143.9
Q ss_pred ceEEEccCCCCCcCCc-----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPAE-----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~-----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+. ..+.++++++++...|++++|+|+|+++||++..++.+|++| ..+++.++.
T Consensus 133 d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~-- 210 (452)
T TIGR03452 133 DQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDE-- 210 (452)
T ss_pred CEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCH--
Confidence 4488999999987741 236788999988778999999999999999999999999999 344555554
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.++ .+ +.++..+.+++.. ++.+... ..++ +++++|.||+++|++|+...+ ++++|+++++
T Consensus 211 ---~~~~~l~~~~~-~gI~i~~~~~V~~i~~~---~~~v~v~-~~~g-~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~ 281 (452)
T TIGR03452 211 ---DISDRFTEIAK-KKWDIRLGRNVTAVEQD---GDGVTLT-LDDG-STVTADVLLVATGRVPNGDLLDAEAAGVEVDE 281 (452)
T ss_pred ---HHHHHHHHHHh-cCCEEEeCCEEEEEEEc---CCeEEEE-EcCC-CEEEcCEEEEeeccCcCCCCcCchhcCeeECC
Confidence 77777776654 45 5567777777542 2333322 2332 479999999999999554444 6788999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+|+|.||+ +++||+|+|||+|||+..+++.+.|.+||+.||.||..
T Consensus 282 ~G~i~vd~-~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 282 DGRIKVDE-YGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CCcEeeCC-CcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcC
Confidence 99999997 89999999999999999999999999999999999963
No 42
>PRK06370 mercuric reductase; Validated
Probab=99.76 E-value=1.3e-17 Score=203.06 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=149.1
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+ ...+.+++++++....|++++|+|+|.+++|++..++..|++| ..+++.++.
T Consensus 135 d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~-- 212 (463)
T PRK06370 135 KRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDE-- 212 (463)
T ss_pred CEEEEcCCCCCCCCCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCH--
Confidence 348899999998874 2346778888877778999999999999999999999999988 445555554
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.|+++| +..+.++.+++.. +++........++..++++|.||+|+|++|+...| ++.+|+++++
T Consensus 213 ---~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~ 287 (463)
T PRK06370 213 ---DVAAAVREILEREGIDVRLNAECIRVERD--GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDA 287 (463)
T ss_pred ---HHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECC
Confidence 78888999998888 4567778777542 22221111223445679999999999999665546 7889999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+|+|.||+ +++||+|+|||+|||+..+.+.+.|..||+.||.||..
T Consensus 288 ~G~i~vd~-~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 288 RGYIKVDD-QLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcEeECc-CCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 99999997 89999999999999999999999999999999999853
No 43
>PLN02507 glutathione reductase
Probab=99.76 E-value=8.4e-18 Score=206.70 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=148.1
Q ss_pred ceEEEccCCCCCcCCc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhcc
Q psy12805 1210 GFIKYSRETAPYRPAE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~ 1280 (1429)
.++.+|||+.|..|+. ....++++++++...|++++|+|+|+++||++..++.+|++| ..+++.++.
T Consensus 169 d~LIIATGs~p~~p~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~---- 244 (499)
T PLN02507 169 KHILIATGSRAQRPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDD---- 244 (499)
T ss_pred CEEEEecCCCCCCCCCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCH----
Confidence 4588999999987742 234678888888778999999999999999999999999999 345555555
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++.+.+.+.|+++| +..+..+.+++.. ++.+... .. +.+++++|.||+++|++|+...+ ++++|++++++|
T Consensus 245 -~~~~~l~~~l~~~GI~i~~~~~V~~i~~~---~~~~~v~-~~-~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G 318 (499)
T PLN02507 245 -EMRAVVARNLEGRGINLHPRTNLTQLTKT---EGGIKVI-TD-HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAG 318 (499)
T ss_pred -HHHHHHHHHHHhCCCEEEeCCEEEEEEEe---CCeEEEE-EC-CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCC
Confidence 88999999999988 5567788888642 2233222 22 23479999999999999665544 788999999999
Q ss_pred CEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|.||+ +++||+|+|||+|||+..+.+++.|..||+.||.||.
T Consensus 319 ~I~Vd~-~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 319 AVKVDE-YSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVF 361 (499)
T ss_pred cEecCC-CCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHc
Confidence 999997 8999999999999999989999999999999999985
No 44
>PLN02546 glutathione reductase
Probab=99.75 E-value=1.6e-17 Score=206.23 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=148.1
Q ss_pred ceEEEccCCCCCcCC---ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhcc
Q psy12805 1210 GFIKYSRETAPYRPA---EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~---~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~ 1280 (1429)
.++.+|||+.|..|+ ...+.++++++++...+++++|+|+|.++||++..++.+|++| ..+++.+++
T Consensus 218 D~LVIATGs~p~~P~IpG~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~---- 293 (558)
T PLN02546 218 RNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDE---- 293 (558)
T ss_pred CEEEEeCCCCCCCCCCCChhhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCH----
Confidence 348899999998774 2346788999888778999999999999999999999999998 445565655
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++.+.+.+.|+++| +..+..+.+++.. .++.+.. .. ++.+...+|.||+++|++|+...| ++++|++++++|
T Consensus 294 -~~~~~l~~~L~~~GV~i~~~~~v~~i~~~--~~g~v~v-~~-~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G 368 (558)
T PLN02546 294 -EVRDFVAEQMSLRGIEFHTEESPQAIIKS--ADGSLSL-KT-NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNG 368 (558)
T ss_pred -HHHHHHHHHHHHCCcEEEeCCEEEEEEEc--CCCEEEE-EE-CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCC
Confidence 88889999999988 4557777777542 2343322 22 233345589999999999665545 789999999999
Q ss_pred CEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|.||+ +++||+|+|||+|||+..+.+++.|+.||+.+|.+|.
T Consensus 369 ~I~VD~-~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 369 AIEVDE-YSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLF 411 (558)
T ss_pred cEeECC-CceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHc
Confidence 999997 8999999999999999999999999999999999985
No 45
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.75 E-value=1.3e-17 Score=203.09 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=148.3
Q ss_pred ceEEEccCCCCCcCCc----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhc
Q psy12805 1210 GFIKYSRETAPYRPAE----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIY 1279 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf 1279 (1429)
.++.+|||+.|..|+. .++.++++.......|++++|+|+|.++||++..+++.|++| .+++|.++.
T Consensus 137 d~lViATGs~p~~~pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~--- 213 (466)
T PRK07818 137 DNAIIATGSSTRLLPGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDA--- 213 (466)
T ss_pred CEEEEeCCCCCCCCCCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCH---
Confidence 4488999999976532 346777776655567899999999999999999999999988 456676665
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEe--CCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEV--PNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~--~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++| +..+.++++++.. ++.+..... +++.+++++|.||+|+|++|+...+ ++++|++++
T Consensus 214 --~~~~~l~~~l~~~gV~i~~~~~v~~i~~~---~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~ 288 (466)
T PRK07818 214 --EVSKEIAKQYKKLGVKILTGTKVESIDDN---GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALT 288 (466)
T ss_pred --HHHHHHHHHHHHCCCEEEECCEEEEEEEe---CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEEC
Confidence 78899999999888 4567788888542 222222222 4444689999999999999665544 788999999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|+|.||+ +++||+|+|||+|||+..+++++.|..||+.||.+|.
T Consensus 289 ~~g~i~vd~-~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 289 DRGAIAIDD-YMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred CCCcEeeCC-CcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHc
Confidence 899999997 8999999999999999989999999999999999996
No 46
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.75 E-value=1.3e-17 Score=203.77 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=147.6
Q ss_pred ceEEEccCCCCCc-C----CccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYR-P----AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~-p----~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|.. | ...++.++++++++...|++++|+|+|.+|||++..++.+|++| ++++|.++.
T Consensus 138 d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~-- 215 (471)
T PRK06467 138 DNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADK-- 215 (471)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCH--
Confidence 4588999999974 3 23457888899988878999999999999999999999999999 556777665
Q ss_pred ccchHHHHHHHHHHhC-CCCCCcEEEEEEEeecCCCceEEEEeC--CCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1279 YHNNWSEALNQLLQTN-NFPAGIKTVKVEWTKDATGRWKMDEVP--NSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~-G~~~gv~v~~Ve~~k~~~G~~~~v~~~--gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++ .+..+..+..++.. ++.+...... ++.+++++|.||+++|++|+...+ ++.+|++++
T Consensus 216 ---~~~~~~~~~l~~~v~i~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~ 289 (471)
T PRK06467 216 ---DIVKVFTKRIKKQFNIMLETKVTAVEAK---EDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVD 289 (471)
T ss_pred ---HHHHHHHHHHhhceEEEcCCEEEEEEEc---CCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceEC
Confidence 8888888888654 34567777777542 2223322222 224579999999999999665544 688899999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|+|.||+ +++||+|+|||+|||+..+.+++.|+.||+.||.+|.
T Consensus 290 ~~G~I~Vd~-~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 290 ERGFIRVDK-QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCCcEeeCC-CcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHc
Confidence 999999997 8999999999999999888999999999999999986
No 47
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.75 E-value=8.6e-17 Score=188.84 Aligned_cols=145 Identities=22% Similarity=0.228 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
.++++ |++|++.+ +.||+|| +++....|..+.++|+|.|+||+|+|. ..+-+.+....|.++.+
T Consensus 215 ~~w~~----i~~l~~~~-~~PvivK---Gv~~~eda~~a~~~Gvd~I~VS~HGGr--------q~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 215 LSPRD----IEEIAGYS-GLPVYVK---GPQCPEDADRALKAGASGIWVTNHGGR--------QLDGGPAAFDSLQEVAE 278 (367)
T ss_pred CCHHH----HHHHHHhc-CCCEEEe---CCCCHHHHHHHHHcCcCEEEECCcCcc--------CCCCCCcHHHHHHHHHH
Confidence 35555 55566665 6899999 556667889999999999999999764 22334555678888877
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEH 664 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~ 664 (1429)
.+ ..+++|++|||||++.|++||++|||++|++|+++|.++. .++.+.
T Consensus 279 av-----~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la---------------------------~~G~~g 326 (367)
T TIGR02708 279 AV-----DKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLA---------------------------LGGSQG 326 (367)
T ss_pred Hh-----CCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHH---------------------------hcCHHH
Confidence 63 3469999999999999999999999999999999998764 356799
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccc
Q psy12805 665 VINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLL 698 (1429)
Q Consensus 665 v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll 698 (1429)
|.++++.+.+||+..|..+|+++++|| .++.+.
T Consensus 327 v~~~l~~l~~El~~~M~l~G~~~i~eL-~~~~l~ 359 (367)
T TIGR02708 327 ARQVFEYLNKELKRVMQLTGTQTIEDV-KGFDLR 359 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHh-Cccccc
Confidence 999999999999999999999999997 555543
No 48
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.74 E-value=2.3e-17 Score=200.10 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=146.4
Q ss_pred cceEEEccCCCCCcCCc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhc
Q psy12805 1209 RGFIKYSRETAPYRPAE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIY 1279 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf 1279 (1429)
..++.+|||+.|..|+. ....++++++.+...+++++|+|+|.+++|++..++..|++| ..+++.+++
T Consensus 131 ~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~--- 207 (446)
T TIGR01424 131 AKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDD--- 207 (446)
T ss_pred cCEEEEecCCcCCCCCCCCccceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCH---
Confidence 34588999999987642 234677888887777999999999999999999999999998 444555554
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCC
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPR 1356 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~ 1356 (1429)
++.+.+.+.|+++| +..+..+.+++.. +++ ... ...+ .+++++|.||+|+|++|+...+ ++.+|++++++
T Consensus 208 --~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v-~~~~-g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~ 280 (446)
T TIGR01424 208 --DMRALLARNMEGRGIRIHPQTSLTSITKT--DDG-LKV-TLSH-GEEIVADVVLFATGRSPNTKGLGLEAAGVELNDA 280 (446)
T ss_pred --HHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-EEE-EEcC-CcEeecCEEEEeeCCCcCCCcCCccccCeEECCC
Confidence 88888888998888 4557777777542 223 222 2222 3479999999999999655545 78899999999
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
|+|.||+ +++||+|+|||+|||+..+.+++.|+.||+.||.+|.
T Consensus 281 G~i~vd~-~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 281 GAIAVDE-YSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEF 324 (446)
T ss_pred CcEEeCC-CCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHh
Confidence 9999997 8999999999999999999999999999999999985
No 49
>PRK14727 putative mercuric reductase; Provisional
Probab=99.74 E-value=2.8e-17 Score=201.15 Aligned_cols=180 Identities=14% Similarity=0.201 Sum_probs=143.6
Q ss_pred ceEEEccCCCCCcCCcc-----CccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc-----cccccccchhhc
Q psy12805 1210 GFIKYSRETAPYRPAEK-----RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL-----GNIIPKWNDLIY 1279 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~-----rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V-----~~iLp~~d~lvf 1279 (1429)
.++.+|||+.|..|+.. .+.+..+.+.....|++++|+|+|.++||++..++.+|++| .++++.+++
T Consensus 152 d~lViATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~--- 228 (479)
T PRK14727 152 DRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDP--- 228 (479)
T ss_pred CEEEEecCCCCCCCCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchH---
Confidence 44889999999887422 34555666655567899999999999999999999999998 345555554
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCC
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPR 1356 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~ 1356 (1429)
++.+.+.+.|+++| +.++.++..++.. ++.+.. ...+ .++++|.||+|+|+.|+...| ++.+|++++++
T Consensus 229 --~~~~~l~~~L~~~GV~i~~~~~V~~i~~~---~~~~~v-~~~~--g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~ 300 (479)
T PRK14727 229 --LLGETLTACFEKEGIEVLNNTQASLVEHD---DNGFVL-TTGH--GELRAEKLLISTGRHANTHDLNLEAVGVTTDTS 300 (479)
T ss_pred --HHHHHHHHHHHhCCCEEEcCcEEEEEEEe---CCEEEE-EEcC--CeEEeCEEEEccCCCCCccCCCchhhCceecCC
Confidence 78888999999888 4567788777542 222222 2222 258999999999999655544 78889999999
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
|+|.||+ +++||+|+|||+|||+..+.+++.|+.||+.||.+|.
T Consensus 301 G~i~Vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 301 GAIVVNP-AMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred CCEEECC-CeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHc
Confidence 9999997 8999999999999999999999999999999999985
No 50
>COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion]
Probab=99.74 E-value=3.8e-18 Score=184.82 Aligned_cols=145 Identities=27% Similarity=0.408 Sum_probs=96.6
Q ss_pred ccccCCCCCCcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEE
Q psy12805 788 KTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIII 867 (1429)
Q Consensus 788 ~~g~~glp~~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv 867 (1429)
++....+.... |.++|++||.+|+- |.|.+|.|+|||.+|+|.||++|. +.+.|+|.||||++.-| +
T Consensus 77 k~iG~~M~aGe--I~V~GdVg~~~G~~-MkgGkI~V~G~a~sw~G~Em~gge------~~i~gna~dyVg~~YRg-e--- 143 (264)
T COG2218 77 KRIGERMSAGE--IIVEGDVGMHVGAG-MKGGKIVVNGNADSWAGIEMKGGE------IKIFGNAGDYVGCAYRG-E--- 143 (264)
T ss_pred ccccccccccE--EEEeccccceeeee-eeccEEEEeCCCCCcccceeeCCe------EEEeechHHhccceeec-c---
Confidence 34444555444 56789999999999 666699999999999998888887 99999999999954331 1
Q ss_pred eCCCCCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCCCccccc
Q psy12805 868 YPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFAAG 946 (1429)
Q Consensus 868 ~p~~~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~g~g 946 (1429)
--||+||+|.|+|+|+...|..|++|++.|+| +|.++|-.|.||+|+|-|++++.+|..
T Consensus 144 --------------------~rgm~Gg~Iiv~Gna~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~G~e 203 (264)
T COG2218 144 --------------------WRGMSGGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGE 203 (264)
T ss_pred --------------------cccCcCCEEEEecCcccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccccce
Confidence 12444555555555555555555555555555 555555556666666666666666666
Q ss_pred ccccEEEEecCCCchhccc
Q psy12805 947 MSGGIAYVLDVDGSFAKKC 965 (1429)
Q Consensus 947 M~gG~~yv~~~~~~f~~~~ 965 (1429)
|.+|+|.|...-++|.+.+
T Consensus 204 M~~G~IvV~G~~~~~Lp~f 222 (264)
T COG2218 204 MKGGTIVVDGKAGEFLPGF 222 (264)
T ss_pred eeCcEEEEccCHHHhCccc
Confidence 6666666655555554433
No 51
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.74 E-value=3e-17 Score=193.77 Aligned_cols=138 Identities=23% Similarity=0.269 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
++++ |++||+.+ +.||+|| ++.....|..+.++|+|.|+||||+|+. .+.++|++.+|.++.+.
T Consensus 241 tW~~----i~~lr~~~-~~pvivK---gV~~~~dA~~a~~~G~d~I~vsnhGGr~--------~d~~~~t~~~L~ei~~~ 304 (383)
T cd03332 241 TWED----LAFLREWT-DLPIVLK---GILHPDDARRAVEAGVDGVVVSNHGGRQ--------VDGSIAALDALPEIVEA 304 (383)
T ss_pred CHHH----HHHHHHhc-CCCEEEe---cCCCHHHHHHHHHCCCCEEEEcCCCCcC--------CCCCcCHHHHHHHHHHH
Confidence 5555 45566665 6899999 4445567888999999999999997752 35689999999999987
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v 665 (1429)
+ .++++|++|||||+|.||+||++|||++|++|+++|.++. .++.++|
T Consensus 305 ~-----~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~---------------------------~~G~~gv 352 (383)
T cd03332 305 V-----GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLA---------------------------LGGEDGV 352 (383)
T ss_pred h-----cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH---------------------------hccHHHH
Confidence 6 2469999999999999999999999999999999998774 2467999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 666 INYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 666 ~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
.++++.+.+||+..|..+|+++++||
T Consensus 353 ~~~l~~l~~El~~~m~l~G~~~i~~l 378 (383)
T cd03332 353 EHVLRNLLAELDLTMGLAGIRSIAEL 378 (383)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 99999999999999999999999997
No 52
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.74 E-value=6.4e-17 Score=190.68 Aligned_cols=134 Identities=23% Similarity=0.298 Sum_probs=113.8
Q ss_pred HHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCC
Q psy12805 514 IYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRS 593 (1429)
Q Consensus 514 I~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~ 593 (1429)
|++||+.+ +.||+|| ++--...|..+.++|+|.|+||||+|.. .+..+|+...|.++.+.+ ..
T Consensus 237 i~~lr~~~-~~pvivK---gV~s~~dA~~a~~~Gvd~I~Vs~hGGr~--------~d~~~~t~~~L~~i~~a~-----~~ 299 (381)
T PRK11197 237 LEWIRDFW-DGPMVIK---GILDPEDARDAVRFGADGIVVSNHGGRQ--------LDGVLSSARALPAIADAV-----KG 299 (381)
T ss_pred HHHHHHhC-CCCEEEE---ecCCHHHHHHHHhCCCCEEEECCCCCCC--------CCCcccHHHHHHHHHHHh-----cC
Confidence 55666666 7899999 4445567888999999999999996542 233478888898887754 23
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLA 673 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~ 673 (1429)
+++|++|||||+|.||+||++|||++|++|+++|.++. .++.++|.++++.+.
T Consensus 300 ~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la---------------------------~~G~~gv~~~l~~l~ 352 (381)
T PRK11197 300 DITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALA---------------------------AAGQAGVANLLDLIE 352 (381)
T ss_pred CCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHH---------------------------hccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998875 356899999999999
Q ss_pred HHHHHHHHhcCCCChhhh
Q psy12805 674 EEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 674 ~eLr~iMa~mGi~sl~El 691 (1429)
+||+..|..+|+++++||
T Consensus 353 ~El~~~m~l~G~~~i~el 370 (381)
T PRK11197 353 KEMRVAMTLTGAKSISEI 370 (381)
T ss_pred HHHHHHHHHHCCCCHHHh
Confidence 999999999999999997
No 53
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.74 E-value=2.2e-17 Score=201.43 Aligned_cols=181 Identities=18% Similarity=0.272 Sum_probs=148.7
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
-++.+|||+.|..|+ ..++.+++++++....|++++|+|+|.++||++..++.+|++| .+++|.++.
T Consensus 141 d~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~-- 218 (466)
T PRK07845 141 DVVLIATGASPRILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDA-- 218 (466)
T ss_pred CEEEEcCCCCCCCCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCH--
Confidence 348899999997553 3457789999888778999999999999999999999999998 455666655
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.|+++| +..+.++.+++.. ++.+... ..+ .+++++|.||+++|++|+...+ ++++|+++++
T Consensus 219 ---~~~~~l~~~L~~~gV~i~~~~~v~~v~~~---~~~~~v~-~~~-g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~ 290 (466)
T PRK07845 219 ---DAAEVLEEVFARRGMTVLKRSRAESVERT---GDGVVVT-LTD-GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTP 290 (466)
T ss_pred ---HHHHHHHHHHHHCCcEEEcCCEEEEEEEe---CCEEEEE-ECC-CcEEEecEEEEeecCCcCCCCCCchhhCceECC
Confidence 78889999999988 4567788888542 2233322 233 3479999999999999655544 7889999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|+|.||+ +++||+|+|||+|||+..+++++.|..||+.|+.++.
T Consensus 291 ~G~i~Vd~-~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 291 SGHITVDR-VSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCcEeECC-CcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHc
Confidence 99999997 8999999999999999999999999999999999885
No 54
>PRK06116 glutathione reductase; Validated
Probab=99.74 E-value=2.4e-17 Score=199.83 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=148.1
Q ss_pred ceEEEccCCCCCcCCc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhcc
Q psy12805 1210 GFIKYSRETAPYRPAE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~ 1280 (1429)
.++.+|||+.|..|+. ..+.++++++.....|++++|+|+|.+++|++..+++.|++| ..+++.+++
T Consensus 133 d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~---- 208 (450)
T PRK06116 133 DHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDP---- 208 (450)
T ss_pred CEEEEecCCCCCCCCCCCcceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCH----
Confidence 3488999999987742 345678888887778999999999999999999999999998 334454444
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++.+.+.+.|+++| +..+.++.+++.. +++.+.....++ ++++||.||+|+|++|+...+ ++.+|++++++|
T Consensus 209 -~~~~~l~~~L~~~GV~i~~~~~V~~i~~~--~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G 283 (450)
T PRK06116 209 -DIRETLVEEMEKKGIRLHTNAVPKAVEKN--ADGSLTLTLEDG--ETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKG 283 (450)
T ss_pred -HHHHHHHHHHHHCCcEEECCCEEEEEEEc--CCceEEEEEcCC--cEEEeCEEEEeeCCCcCCCCCCchhcCceECCCC
Confidence 88889999999988 5568888888642 334333332233 479999999999999655545 788999999999
Q ss_pred CEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|.||+ +++||+|+|||+|||+..+++++.|+.||+.||.+|.
T Consensus 284 ~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 284 YIIVDE-YQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLF 326 (450)
T ss_pred cEecCC-CCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHh
Confidence 999997 8999999999999999889999999999999999995
No 55
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.74 E-value=2.5e-17 Score=200.03 Aligned_cols=181 Identities=27% Similarity=0.351 Sum_probs=149.8
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+ ...+.|++++++....|++++|+|+|.++||++..++..|.+| .++++.++.
T Consensus 139 d~lviATGs~p~~p~~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~-- 216 (461)
T PRK05249 139 DKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDD-- 216 (461)
T ss_pred CEEEEcCCCCCCCCCCCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCH--
Confidence 348899999998874 3457889999988888999999999999999999999999998 456666665
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.++++| +..+..+.+++.. ++.+... ..++ +++++|.||+|+|++|+...+ ++++|+++++
T Consensus 217 ---~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~-~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~ 288 (461)
T PRK05249 217 ---EISDALSYHLRDSGVTIRHNEEVEKVEGG---DDGVIVH-LKSG-KKIKADCLLYANGRTGNTDGLNLENAGLEADS 288 (461)
T ss_pred ---HHHHHHHHHHHHcCCEEEECCEEEEEEEe---CCeEEEE-ECCC-CEEEeCEEEEeecCCccccCCCchhhCcEecC
Confidence 88899999999888 4457777777542 2233322 2332 379999999999999655444 7889999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|+|.||+ +++|+.|+|||+|||+..+.+++.|+.||+.||.+|.
T Consensus 289 ~G~i~vd~-~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 289 RGQLKVNE-NYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCcEeeCC-CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 99999997 8999999999999999888999999999999999996
No 56
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.74 E-value=2.8e-17 Score=200.49 Aligned_cols=182 Identities=20% Similarity=0.221 Sum_probs=145.7
Q ss_pred eEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhc
Q psy12805 1211 FIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIY 1279 (1429)
Q Consensus 1211 f~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf 1279 (1429)
++.+|||+.|..++ ..++.++++++.+...|++++|+|+|+++||++..++.+|++| .+++|.++.
T Consensus 139 ~lVIATGs~p~~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~--- 215 (466)
T PRK06115 139 DIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDT--- 215 (466)
T ss_pred EEEEeCCCCCCCCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCH---
Confidence 48899999986432 2346788888887778999999999999999999999999998 455666555
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEe---CCCeeEEEecEEEEeccccCchhhh-hhccCccc
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEV---PNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTL 1353 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~---~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLel 1353 (1429)
++.+.+.+.|+++| +..+..+.+++.. +++ +..... .++.+++++|.||+++|++|+...| ++.+|+++
T Consensus 216 --~~~~~l~~~l~~~gV~i~~~~~V~~i~~~--~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~ 290 (466)
T PRK06115 216 --ETAKTLQKALTKQGMKFKLGSKVTGATAG--ADG-VSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLET 290 (466)
T ss_pred --HHHHHHHHHHHhcCCEEEECcEEEEEEEc--CCe-EEEEEEEcCCCceeEEEeCEEEEccCCccccccCCccccccee
Confidence 78889999999888 4567788888542 223 222211 2445689999999999999655445 77889999
Q ss_pred cCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1354 DPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1354 d~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+++| +.||+ +++||+|+|||+|||+..+++++.|..||+.||.+|..
T Consensus 291 ~~~G-~~vd~-~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 291 DKRG-MLAND-HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CCCC-EEECC-CeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 8877 77886 89999999999999999999999999999999999963
No 57
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.73 E-value=5.3e-17 Score=204.29 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=146.8
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+ ...+.+++++..+...|++++|+|+|++|||++..++.+|++| ++++|.++.
T Consensus 276 d~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~-- 353 (659)
T PTZ00153 276 KNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDA-- 353 (659)
T ss_pred CEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCH--
Confidence 348899999998874 2357888999888778999999999999999999999999998 566776666
Q ss_pred ccchHHHHHHHHH-HhCC--CCCCcEEEEEEEeecCCCc-eEEEEeC---C----------CeeEEEecEEEEeccccCc
Q psy12805 1279 YHNNWSEALNQLL-QTNN--FPAGIKTVKVEWTKDATGR-WKMDEVP---N----------SEKIFKCDLVLLAMGFLGP 1341 (1429)
Q Consensus 1279 f~~e~~~al~~~L-e~~G--~~~gv~v~~Ve~~k~~~G~-~~~v~~~---g----------se~~ieaDlVLlAiG~~pp 1341 (1429)
++.+.+.+.+ +++| +..+..+.+++.. +++. +.....+ + +.+++++|.||+|+|++|+
T Consensus 354 ---eis~~l~~~ll~~~GV~I~~~~~V~~I~~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 354 ---DVAKYFERVFLKSKPVRVHLNTLIEYVRAG--KGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred ---HHHHHHHHHHhhcCCcEEEcCCEEEEEEec--CCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 8888888875 5677 5568888888642 2222 2222111 1 1247999999999999966
Q ss_pred hhhh-hhccCccccCCCCEEecCCCCccC------CCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1342 ERYI-ANELDLTLDPRSNYSTVEKTYLTT------VPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1342 ~~~L-le~lGLeld~~G~I~VD~~~~~TS------vPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
...| ++.+++++++ |+|.||+ +++|+ +|+|||+|||++.+++++.|..||+.||++|..
T Consensus 429 t~~L~l~~~gi~~~~-G~I~VDe-~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 429 TNNLGLDKLKIQMKR-GFVSVDE-HLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CccCCchhcCCcccC-CEEeECC-CCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcC
Confidence 5555 6888998874 9999997 89997 699999999999899999999999999999963
No 58
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.72 E-value=1.1e-16 Score=193.82 Aligned_cols=180 Identities=12% Similarity=0.169 Sum_probs=146.1
Q ss_pred ceEEEccCCCCCcCCc------cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchh
Q psy12805 1210 GFIKYSRETAPYRPAE------KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDL 1277 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~------~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~l 1277 (1429)
.++.+|||+.|..|+. ..+.++++++.....|++++|+|+|+++||++..++.+|++| ..++|.++.
T Consensus 121 d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~- 199 (441)
T PRK08010 121 EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDR- 199 (441)
T ss_pred CEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCH-
Confidence 3488999999987742 236678888887778999999999999999999999999998 445666655
Q ss_pred hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1278 IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++| +..+.++.+++.. ++.+.. ..++ .++++|.|++|+|++|+...+ ++++|++++
T Consensus 200 ----~~~~~l~~~l~~~gV~v~~~~~v~~i~~~---~~~v~v-~~~~--g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~ 269 (441)
T PRK08010 200 ----DIADNIATILRDQGVDIILNAHVERISHH---ENQVQV-HSEH--AQLAVDALLIASGRQPATASLHPENAGIAVN 269 (441)
T ss_pred ----HHHHHHHHHHHhCCCEEEeCCEEEEEEEc---CCEEEE-EEcC--CeEEeCEEEEeecCCcCCCCcCchhcCcEEC
Confidence 78888999999988 4567788888542 233322 2222 258999999999999655444 678899999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|+|.||+ +++||+|+|||+|||+..+++.+.|..+|+.++.+|.
T Consensus 270 ~~G~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 270 ERGAIVVDK-YLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELL 315 (441)
T ss_pred CCCcEEECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHc
Confidence 899999997 8999999999999999999999999999999999984
No 59
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.72 E-value=7e-17 Score=196.50 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=146.3
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+ ...+.++++++++...|++++|+|+|++++|++..+++.|++| +.++|.++.
T Consensus 134 d~lviATGs~p~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~-- 211 (458)
T PRK06912 134 EQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDE-- 211 (458)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccH--
Confidence 458899999997653 2346788889988888999999999999999999999999988 455665554
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.|+++| +.++.++.+++.. +..+. ...+++.++++||.||+|+|++|+...+ ++..|+++++
T Consensus 212 ---e~~~~l~~~L~~~GI~i~~~~~V~~i~~~---~~~v~-~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~ 284 (458)
T PRK06912 212 ---DIAHILREKLENDGVKIFTGAALKGLNSY---KKQAL-FEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSN 284 (458)
T ss_pred ---HHHHHHHHHHHHCCCEEEECCEEEEEEEc---CCEEE-EEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecC
Confidence 78889999999888 4567777777532 22222 2234444579999999999999655444 6788999887
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+| |.||+ +++|+.|+|||+|||+.+++++++|+.||+.||.++.
T Consensus 285 ~g-i~Vd~-~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 285 KG-ISVNE-HMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred CC-EEeCC-CeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHc
Confidence 77 99997 8999999999999999989999999999999999984
No 60
>PTZ00058 glutathione reductase; Provisional
Probab=99.72 E-value=6.2e-17 Score=200.97 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=143.8
Q ss_pred ceEEEccCCCCCcCCc---cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhhcc
Q psy12805 1210 GFIKYSRETAPYRPAE---KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYH 1280 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~---~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~ 1280 (1429)
.++.+|||+.|..|+. +.+.++++++++.. |++++|+|+|+++||++..++.+|++| .+++|.+++
T Consensus 204 d~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~---- 278 (561)
T PTZ00058 204 KNILIAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE---- 278 (561)
T ss_pred CEEEEecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH----
Confidence 3488999999987742 23678888888755 999999999999999999999999999 445666665
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++.+.+.+.|+++| +..+..+.+++.. +++.+... ..++.+++++|.||+|+|++|+...+ ++.+++.. ++|
T Consensus 279 -~i~~~l~~~L~~~GV~i~~~~~V~~I~~~--~~~~v~v~-~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~-~~G 353 (561)
T PTZ00058 279 -TIINELENDMKKNNINIITHANVEEIEKV--KEKNLTIY-LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKT-PKG 353 (561)
T ss_pred -HHHHHHHHHHHHCCCEEEeCCEEEEEEec--CCCcEEEE-ECCCCEEEECCEEEECcCCCCCccccCccccceec-CCC
Confidence 88899999999988 4567778888642 22233322 23444579999999999999554444 45556654 579
Q ss_pred CEEecCCCCccCCCCEEEeCCCCC----------------------------------CCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRR----------------------------------GQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~----------------------------------g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|.||+ +++||+|+|||+|||+. ..++++.|..||+.||.+|.
T Consensus 354 ~I~VDe-~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 354 YIKVDD-NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred eEEECc-CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 999997 89999999999999998 67899999999999999995
No 61
>PRK13748 putative mercuric reductase; Provisional
Probab=99.72 E-value=6.2e-17 Score=201.35 Aligned_cols=181 Identities=16% Similarity=0.217 Sum_probs=145.2
Q ss_pred cceEEEccCCCCCcCCcc-----CccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCcc-----ccccccchhh
Q psy12805 1209 RGFIKYSRETAPYRPAEK-----RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLG-----NIIPKWNDLI 1278 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~~-----rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~-----~iLp~~d~lv 1278 (1429)
..++.+|||+.|..|+.. .+++..+.+.....|++++|+|+|+++||++..++.+|++|. .+++.+++
T Consensus 233 ~d~lviAtGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~-- 310 (561)
T PRK13748 233 FDRCLIATGASPAVPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDP-- 310 (561)
T ss_pred cCEEEEcCCCCCCCCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCH--
Confidence 345889999999877422 245666766666678999999999999999999999999983 34455554
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccC
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDP 1355 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~ 1355 (1429)
++.+.+.+.|+++| +.++..+.+++.. ++.+. +..++ . ++++|.||+|+|++|+...+ ++++|+++++
T Consensus 311 ---~~~~~l~~~l~~~gI~i~~~~~v~~i~~~---~~~~~-v~~~~-~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~ 381 (561)
T PRK13748 311 ---AIGEAVTAAFRAEGIEVLEHTQASQVAHV---DGEFV-LTTGH-G-ELRADKLLVATGRAPNTRSLALDAAGVTVNA 381 (561)
T ss_pred ---HHHHHHHHHHHHCCCEEEcCCEEEEEEec---CCEEE-EEecC-C-eEEeCEEEEccCCCcCCCCcCchhcCceECC
Confidence 88899999999988 5567788877542 33322 22222 2 59999999999999655444 6889999999
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|+|.||+ +++||+|+|||+|||+..+.+++.|..+|+.||.+|.
T Consensus 382 ~g~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 382 QGAIVIDQ-GMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCEeECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHc
Confidence 99999997 8999999999999999999999999999999999985
No 62
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.72 E-value=7.6e-17 Score=195.84 Aligned_cols=185 Identities=24% Similarity=0.272 Sum_probs=147.9
Q ss_pred ceEEEccCCC-CCcCCc-----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchh
Q psy12805 1210 GFIKYSRETA-PYRPAE-----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDL 1277 (1429)
Q Consensus 1210 gf~kiAtGs~-P~~p~~-----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~l 1277 (1429)
.++.+|||+. |..|.. ..+.++++++++...|++++|+|+|.++||++..++.+|++| ++++|.+++
T Consensus 132 d~lIiATGs~~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~- 210 (460)
T PRK06292 132 KNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDP- 210 (460)
T ss_pred CEEEEeCCCCCCCCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhH-
Confidence 3488999998 766532 356788888877778999999999999999999999999998 445555555
Q ss_pred hccchHHHHHHHHHHhCCCC--CCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1278 IYHNNWSEALNQLLQTNNFP--AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G~~--~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++ +. .+.++.+++.. .+..+.....+++++++++|.||+++|++|+...| ++.+|++++
T Consensus 211 ----~~~~~~~~~l~~~-I~i~~~~~v~~i~~~--~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~ 283 (460)
T PRK06292 211 ----EVSKQAQKILSKE-FKIKLGAKVTSVEKS--GDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELD 283 (460)
T ss_pred ----HHHHHHHHHHhhc-cEEEcCCEEEEEEEc--CCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEec
Confidence 7888888888876 54 57777777542 11122222224556689999999999999665544 788999999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
++|+|.||+ +++||+|+|||+|||+..+++++.|+.||+.||.+|...
T Consensus 284 ~~g~i~vd~-~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 284 ERGRPVVDE-HTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CCCcEeECC-CcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 999999997 899999999999999998899999999999999999653
No 63
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.71 E-value=9.1e-17 Score=195.37 Aligned_cols=183 Identities=25% Similarity=0.267 Sum_probs=147.7
Q ss_pred ceEEEccCCCCCcCCc-----cCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPAE-----KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~-----~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..|+. ..+.+++++.++...|++++|+|+|.+++|++..++..|++| ++++|.+++
T Consensus 136 d~lViAtGs~p~~~pg~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~-- 213 (462)
T PRK06416 136 KNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDK-- 213 (462)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCH--
Confidence 4588999999976642 236688888887778899999999999999999999999998 455665554
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeC-CCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVP-NSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~-gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|++.| +..+.++.+++.. ++.+.....+ ++.++++||.||+++|++|+...+ ++++|++++
T Consensus 214 ---~~~~~l~~~l~~~gV~i~~~~~V~~i~~~---~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~ 287 (462)
T PRK06416 214 ---EISKLAERALKKRGIKIKTGAKAKKVEQT---DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD 287 (462)
T ss_pred ---HHHHHHHHHHHHcCCEEEeCCEEEEEEEe---CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec
Confidence 88899999999888 5567888888642 2233322222 333679999999999999554444 578999998
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+|+|.||+ +++|++|+|||+|||+..+.+++.|..||+.||.||..
T Consensus 288 -~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 288 -RGFIEVDE-QLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred -CCEEeECC-CCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 89999997 89999999999999998889999999999999999964
No 64
>PRK14694 putative mercuric reductase; Provisional
Probab=99.71 E-value=2.4e-16 Score=192.34 Aligned_cols=179 Identities=16% Similarity=0.225 Sum_probs=140.8
Q ss_pred ceEEEccCCCCCcCCcc-----CccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc-----cccccccchhhc
Q psy12805 1210 GFIKYSRETAPYRPAEK-----RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL-----GNIIPKWNDLIY 1279 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~-----rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V-----~~iLp~~d~lvf 1279 (1429)
.++.+|||+.|..|+.. .+.++++.+.+...|++++|+|+|+++||++..++..|++| .+++|.+++
T Consensus 142 d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~--- 218 (468)
T PRK14694 142 DRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDP--- 218 (468)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCH---
Confidence 44889999999877422 34566666666667899999999999999999999999988 344454444
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCC
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPR 1356 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~ 1356 (1429)
++.+.+.+.|+++| +.++..+.+++.. ++.+. +..+++ ++++|.||+|+|++|+...+ ++++|++. ++
T Consensus 219 --~~~~~l~~~l~~~GI~v~~~~~v~~i~~~---~~~~~-v~~~~~--~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~ 289 (468)
T PRK14694 219 --AVGEAIEAAFRREGIEVLKQTQASEVDYN---GREFI-LETNAG--TLRAEQLLVATGRTPNTENLNLESIGVET-ER 289 (468)
T ss_pred --HHHHHHHHHHHhCCCEEEeCCEEEEEEEc---CCEEE-EEECCC--EEEeCEEEEccCCCCCcCCCCchhcCccc-CC
Confidence 78899999999988 4567777777542 23222 222332 59999999999999554433 57788986 47
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
|+|.||+ +++||+|+|||+|||+..+.+++.|..||+.||.+|.
T Consensus 290 G~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 290 GAIRIDE-HLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred CeEeeCC-CcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhc
Confidence 8999997 8999999999999999999999999999999999985
No 65
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.70 E-value=1.5e-16 Score=194.44 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=146.1
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..++ ...+.++++++.+...|++++|+|+|.+++|++..++++|++| +.+++.+++
T Consensus 147 d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~-- 224 (475)
T PRK06327 147 KHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADE-- 224 (475)
T ss_pred CEEEEeCCCCCCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCH--
Confidence 348899999996442 2346788888887778999999999999999999999999998 334444444
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeC--CCeeEEEecEEEEeccccCchhhh-hhccCccc
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVP--NSEKIFKCDLVLLAMGFLGPERYI-ANELDLTL 1353 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~--gse~~ieaDlVLlAiG~~pp~~~L-le~lGLel 1353 (1429)
++.+.+.+.|+++| +..+.++.+++.. ++.+.....+ ++.+++++|.||+++|++|+...| ++.+|+++
T Consensus 225 ---~~~~~~~~~l~~~gi~i~~~~~v~~i~~~---~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~ 298 (475)
T PRK06327 225 ---QVAKEAAKAFTKQGLDIHLGVKIGEIKTG---GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKL 298 (475)
T ss_pred ---HHHHHHHHHHHHcCcEEEeCcEEEEEEEc---CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCcee
Confidence 78888888898888 4567788888642 2223222222 344579999999999999665544 68889999
Q ss_pred cCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1354 DPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1354 d~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+++|+|.||+ +++|++|+|||+|||+..+.+++.|..||+.||.+|.
T Consensus 299 ~~~G~i~vd~-~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 299 DERGFIPVDD-HCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred CCCCeEeECC-CCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHc
Confidence 9999999997 7999999999999999988999999999999999985
No 66
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.70 E-value=3.1e-16 Score=192.98 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=141.4
Q ss_pred eEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCcccc-----ccccchhhcc
Q psy12805 1211 FIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNI-----IPKWNDLIYH 1280 (1429)
Q Consensus 1211 f~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~i-----Lp~~d~lvf~ 1280 (1429)
++.+|||+.|..|. .....++++++.+...|++++|+|+|+++||++..++.+|++|..+ ++.++.
T Consensus 147 ~lIIATGs~p~~p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~---- 222 (499)
T PTZ00052 147 YILIATGGRPSIPEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDR---- 222 (499)
T ss_pred EEEEecCCCCCCCCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCH----
Confidence 48899999998763 1234678889888778999999999999999999999999999433 344444
Q ss_pred chHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCC
Q psy12805 1281 NNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRS 1357 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G 1357 (1429)
++++.+.+.|+++| +..+..+.+++.. ++..... ..+. +++++|.||+++|++|+...+ ++++|++++++|
T Consensus 223 -~~~~~l~~~l~~~GV~i~~~~~v~~v~~~---~~~~~v~-~~~g-~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G 296 (499)
T PTZ00052 223 -QCSEKVVEYMKEQGTLFLEGVVPINIEKM---DDKIKVL-FSDG-TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSN 296 (499)
T ss_pred -HHHHHHHHHHHHcCCEEEcCCeEEEEEEc---CCeEEEE-ECCC-CEEEcCEEEEeeCCCCCccccCchhcCcEECCCC
Confidence 78899999999988 4567777777542 2222222 2322 368999999999999654444 578999999999
Q ss_pred CEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++.+++ . +||+|+|||+|||+. .+.+++.|+.||+.||.+|.
T Consensus 297 ~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 297 KIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLF 339 (499)
T ss_pred CEeeCC-C-cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 988876 4 999999999999985 57899999999999999995
No 67
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.70 E-value=3.7e-16 Score=181.18 Aligned_cols=266 Identities=15% Similarity=0.112 Sum_probs=171.7
Q ss_pred CCCCCCCCCcccc-----cccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecc
Q psy12805 367 KPVDISEVEPAAE-----IVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVA 441 (1429)
Q Consensus 367 ~~i~~~~v~~~~~-----i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~a 441 (1429)
+.++.+||+.+++ +..||+|+||+ ..+|+.||++|++.|..+..=. .+++.. .+.++++.
T Consensus 18 p~~s~~dvdlst~~~~~~l~~P~~inAM~-----t~iN~~LA~~a~~~G~~~~~~k--~~~e~~--------~~~~r~~~ 82 (326)
T PRK05458 18 IVNSRSECDTSVTLGPRTFKLPVVPANMQ-----TIIDEKIAEWLAENGYFYIMHR--FDPEAR--------IPFIKDMH 82 (326)
T ss_pred CCCCHHHcccceEECCcEecCcEEEeccc-----chhHHHHHHHHHHcCCEEEEec--CCHHHH--------HHHHHhcc
Confidence 4577788888777 56999999995 3999999999999966544321 223321 12223333
Q ss_pred cCC------CCCChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccC-CCCCCCCCHHHHHHHH
Q psy12805 442 SGR------FGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISP-PPHHDIYSIEDLAELI 514 (1429)
Q Consensus 442 sgr------fGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP-~~h~di~siedL~qlI 514 (1429)
+.+ -|++++++. ++.++.....+.+.|.= ..| -..+.+.++|
T Consensus 83 ~~~l~v~~~vg~~~~~~~----------------------------~~~~Lv~ag~~~d~i~iD~a~---gh~~~~~e~I 131 (326)
T PRK05458 83 EQGLIASISVGVKDDEYD----------------------------FVDQLAAEGLTPEYITIDIAH---GHSDSVINMI 131 (326)
T ss_pred ccccEEEEEecCCHHHHH----------------------------HHHHHHhcCCCCCEEEEECCC---CchHHHHHHH
Confidence 321 122222111 11111111111122211 111 1235577789
Q ss_pred HHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC--hHHHHHHHHHHHHhcCCC
Q psy12805 515 YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLR 592 (1429)
Q Consensus 515 ~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP--~~laL~ev~q~L~~~gLR 592 (1429)
+++|+.+|++||++| +++....|..+.++|+|+|.+++++|.+..... ....+.| .+.++.++.+.+
T Consensus 132 ~~ir~~~p~~~vi~g---~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~--~~g~~~~~w~l~ai~~~~~~~------ 200 (326)
T PRK05458 132 QHIKKHLPETFVIAG---NVGTPEAVRELENAGADATKVGIGPGKVCITKI--KTGFGTGGWQLAALRWCAKAA------ 200 (326)
T ss_pred HHHHhhCCCCeEEEE---ecCCHHHHHHHHHcCcCEEEECCCCCccccccc--ccCCCCCccHHHHHHHHHHHc------
Confidence 999999999999999 556667788899999999999988765311111 1123455 444566666543
Q ss_pred CceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC-------------
Q psy12805 593 SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA------------- 659 (1429)
Q Consensus 593 ~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~------------- 659 (1429)
+++||++|||+++.|++||+++||++|++|++++- +.+.|-.+...+..+.+.+-
T Consensus 201 -~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~-----------~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~ 268 (326)
T PRK05458 201 -RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAG-----------HEESPGKTVEIDGKLYKEYFGSASEFQKGEYKN 268 (326)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcC-----------CccCCCceeeecchhHHHhhCcHhhhccccccc
Confidence 48999999999999999999999999999986552 23444444444433333221
Q ss_pred -CcHH-------HHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccccC
Q psy12805 660 -GKPE-------HVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702 (1429)
Q Consensus 660 -g~~e-------~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~ 702 (1429)
.+.+ ++.+++..+..+||..|..+|.+++.||. +.+++....
T Consensus 269 ~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~-~~~~v~~~~ 318 (326)
T PRK05458 269 VEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIR-KVDYVIVKN 318 (326)
T ss_pred cCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHh-cCCEEEEec
Confidence 1222 68899999999999999999999999996 577666543
No 68
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.70 E-value=2.6e-16 Score=191.18 Aligned_cols=184 Identities=21% Similarity=0.191 Sum_probs=149.8
Q ss_pred ceEEEccCCCCCcCCcc------CccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchh
Q psy12805 1210 GFIKYSRETAPYRPAEK------RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDL 1277 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~------rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~l 1277 (1429)
.++.+|||+.|..|+.. .+.++++++.+...|++++|+|+|.+++|++..++..|++| +.++|.++.
T Consensus 133 d~lVlAtG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~- 211 (461)
T TIGR01350 133 KNIIIATGSRPRSLPGPFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDA- 211 (461)
T ss_pred CEEEEcCCCCCCCCCCCCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCH-
Confidence 45889999999876432 36788888887778999999999999999999999999998 445565554
Q ss_pred hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhh-hhhccCcccc
Q psy12805 1278 IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERY-IANELDLTLD 1354 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~-Lle~lGLeld 1354 (1429)
++.+.+.+.++++| +..+.++.+++.. ++.+......++.+++++|.|++|+|+.|+... ++++++++++
T Consensus 212 ----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~---~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~ 284 (461)
T TIGR01350 212 ----EVSKVVAKALKKKGVKILTNTKVTAVEKN---DDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELD 284 (461)
T ss_pred ----HHHHHHHHHHHHcCCEEEeCCEEEEEEEe---CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceEC
Confidence 78888899999888 4567788877542 333333333344457999999999999965544 4788999999
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
++|+|.||+ +++|+.|+|||+|||+..+.++..|+.||+.||.+|..
T Consensus 285 ~~g~i~vd~-~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 285 ERGRIVVDE-YMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred CCCcEeeCC-CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 999999996 89999999999999999899999999999999999864
No 69
>PLN02535 glycolate oxidase
Probab=99.69 E-value=7.9e-16 Score=180.78 Aligned_cols=139 Identities=25% Similarity=0.226 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
++++ |+.||+.+ +.||+||-+ --...|..+.++|+|+|+++|++|. ..++++|++.+|.++.+.
T Consensus 211 tW~~----i~~lr~~~-~~PvivKgV---~~~~dA~~a~~~GvD~I~vsn~GGr--------~~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 211 SWKD----IEWLRSIT-NLPILIKGV---LTREDAIKAVEVGVAGIIVSNHGAR--------QLDYSPATISVLEEVVQA 274 (364)
T ss_pred CHHH----HHHHHhcc-CCCEEEecC---CCHHHHHHHHhcCCCEEEEeCCCcC--------CCCCChHHHHHHHHHHHH
Confidence 5555 55666655 799999944 2334578899999999999999764 336789999999999876
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v 665 (1429)
+ ..+++||++|||+++.||+||++|||++|++|+++|.++. .++.+.+
T Consensus 275 v-----~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~---------------------------~~g~~gv 322 (364)
T PLN02535 275 V-----GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA---------------------------AKGEDGV 322 (364)
T ss_pred H-----hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh---------------------------hccHHHH
Confidence 5 2358999999999999999999999999999999988653 3467889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhhc
Q psy12805 666 INYLFMLAEEVRTHMAKLGIRKFADLV 692 (1429)
Q Consensus 666 ~ny~~~l~~eLr~iMa~mGi~sl~Elv 692 (1429)
.+.++.+.+||+..|+.+|+.+++|+.
T Consensus 323 ~~~l~~l~~el~~~m~l~G~~~i~el~ 349 (364)
T PLN02535 323 RKVIEMLKDELEITMALSGCPSVKDIT 349 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhh
Confidence 999999999999999999999999983
No 70
>PRK12831 putative oxidoreductase; Provisional
Probab=99.68 E-value=3.3e-16 Score=191.08 Aligned_cols=194 Identities=19% Similarity=0.243 Sum_probs=135.3
Q ss_pred ceEEEccCC-CCCcCC-----ccCccchHHHHhh--------------ccCCCceEEEccccccccHHHHHHhCCCCccc
Q psy12805 1210 GFIKYSRET-APYRPA-----EKRLKDWDEIYAT--------------QHVRKGLRIQAARCMECGVPFCQSSHGCPLGN 1269 (1429)
Q Consensus 1210 gf~kiAtGs-~P~~p~-----~~rv~D~~el~~l--------------~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~ 1269 (1429)
..+.+|||+ .|..++ ...+.+..+++.. ...+++++|+|+|.++++++..+.++|.+|..
T Consensus 230 d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtl 309 (464)
T PRK12831 230 DAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHI 309 (464)
T ss_pred CEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence 458899998 576542 2346666666533 13568999999999999999999999999854
Q ss_pred cccccchhhccchHHHHHHHHHHhCCC--CCCcEEEEEEEee-----------------cCCCceEEEEeCCCeeEEEec
Q psy12805 1270 IIPKWNDLIYHNNWSEALNQLLQTNNF--PAGIKTVKVEWTK-----------------DATGRWKMDEVPNSEKIFKCD 1330 (1429)
Q Consensus 1270 iLp~~d~lvf~~e~~~al~~~Le~~G~--~~gv~v~~Ve~~k-----------------~~~G~~~~v~~~gse~~ieaD 1330 (1429)
+.+.-..- .. .....+.+ +++.|+ .....++++...+ +.+|+...+..++++++++||
T Consensus 310 v~r~~~~~-m~-a~~~e~~~-a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D 386 (464)
T PRK12831 310 VYRRSEEE-LP-ARVEEVHH-AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD 386 (464)
T ss_pred EeecCccc-CC-CCHHHHHH-HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC
Confidence 43321110 00 11112222 345563 3344444443210 112222222335666689999
Q ss_pred EEEEeccccCchhhhhhc-cCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1331 LVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1331 lVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
+||+|+|+.| +..+++. .|++++++|+|.||+.+++||+|+|||+|||+.++.+++.|+++|+.||.+|++||+++
T Consensus 387 ~Vi~AiG~~p-~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 387 TVIMSLGTSP-NPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred EEEECCCCCC-ChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999995 5566665 79999999999999744999999999999999999999999999999999999999863
No 71
>COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion]
Probab=99.68 E-value=6.3e-17 Score=175.50 Aligned_cols=114 Identities=29% Similarity=0.473 Sum_probs=90.4
Q ss_pred hhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCCccceeccccccc
Q psy12805 811 FCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYG 890 (1429)
Q Consensus 811 ~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg 890 (1429)
.|.-|+.| +|+|+||+|-++|.+|++|. |+|+|+|.++.|.-|.||+|.|+
T Consensus 79 iG~~M~aG-eI~V~GdVg~~~G~~MkgGk------I~V~G~a~sw~G~Em~gge~~i~---------------------- 129 (264)
T COG2218 79 IGERMSAG-EIIVEGDVGMHVGAGMKGGK------IVVNGNADSWAGIEMKGGEIKIF---------------------- 129 (264)
T ss_pred cccccccc-EEEEeccccceeeeeeeccE------EEEeCCCCCcccceeeCCeEEEe----------------------
Confidence 34554444 67788888866655555444 88888888888877777777664
Q ss_pred cccCceeEecccCcceeee-------ecCceEEEcc-cCccccccccCceEEEeCCCCCcccccccccEEEEecCCCchh
Q psy12805 891 ATSGKAFFRGIAAERFSVR-------NSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFA 962 (1429)
Q Consensus 891 ~tgG~~~i~g~ag~Rfgvr-------~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv~~~~~~f~ 962 (1429)
|+|++.+|.+ ||||+|+|+| +|+..||+|.+|.|.|.|++|.+.|+-|.||+|.+...-+.|.
T Consensus 130 ---------gna~dyVg~~YRge~rgm~Gg~Iiv~Gna~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~ 200 (264)
T COG2218 130 ---------GNAGDYVGCAYRGEWRGMSGGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFV 200 (264)
T ss_pred ---------echHHhccceeecccccCcCCEEEEecCcccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccc
Confidence 5555555543 8999999999 9999999999999999999999999999999999998877775
No 72
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.68 E-value=3.8e-16 Score=189.78 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=133.9
Q ss_pred ceEEEccCC-CCCcCC-----ccCccchHHHHhh---------------ccCCCceEEEccccccccHHHHHHhCCCCcc
Q psy12805 1210 GFIKYSRET-APYRPA-----EKRLKDWDEIYAT---------------QHVRKGLRIQAARCMECGVPFCQSSHGCPLG 1268 (1429)
Q Consensus 1210 gf~kiAtGs-~P~~p~-----~~rv~D~~el~~l---------------~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~ 1268 (1429)
.++.+|||+ .|..++ ...+.+..+++.. ....++++|+|+|.++++++..+.++|++|.
T Consensus 220 d~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vt 299 (449)
T TIGR01316 220 DAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVH 299 (449)
T ss_pred CEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 468899997 576552 2234555554321 1135899999999999999999999999985
Q ss_pred ccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCce-------------------EEEEeCCCeeEE
Q psy12805 1269 NIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRW-------------------KMDEVPNSEKIF 1327 (1429)
Q Consensus 1269 ~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~-------------------~~v~~~gse~~i 1327 (1429)
.+.+.-.... .......+.+++.| |.++..++++.. +++|++ ..+...++++++
T Consensus 300 lv~~~~~~~~---~~~~~~~~~l~~~GV~~~~~~~~~~i~~--~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i 374 (449)
T TIGR01316 300 CLYRRTREDM---TARVEEIAHAEEEGVKFHFLCQPVEIIG--DEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL 374 (449)
T ss_pred EEeecCcccC---CCCHHHHHHHHhCCCEEEeccCcEEEEE--cCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEE
Confidence 5443311100 01112224456667 334455555532 122322 222234556689
Q ss_pred EecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy12805 1328 KCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1328 eaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L 1404 (1429)
+||+||+|+|+. |+..+++.+|++++++|+|.||+ +++||+|+|||+|||+.++.+++.|+++|+.||.+|++||
T Consensus 375 ~~D~Vi~AiG~~-p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 375 EADAVIVAIGNG-SNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred ECCEEEECCCCC-CCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999 55667888999999999999997 7999999999999999999999999999999999999986
No 73
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.67 E-value=1.8e-15 Score=177.55 Aligned_cols=133 Identities=25% Similarity=0.241 Sum_probs=113.1
Q ss_pred HHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCC
Q psy12805 513 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 592 (1429)
Q Consensus 513 lI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR 592 (1429)
.|++||+.+ +.||++| ++--...|..+.++|+|.|++|+|+|.. .+...+++.+|.++.+.+
T Consensus 227 ~i~~ir~~~-~~pviiK---gV~~~eda~~a~~~G~d~I~VSnhGGrq--------ld~~~~~~~~L~ei~~~~------ 288 (361)
T cd04736 227 DLRWLRDLW-PHKLLVK---GIVTAEDAKRCIELGADGVILSNHGGRQ--------LDDAIAPIEALAEIVAAT------ 288 (361)
T ss_pred HHHHHHHhC-CCCEEEe---cCCCHHHHHHHHHCCcCEEEECCCCcCC--------CcCCccHHHHHHHHHHHh------
Confidence 466777777 5799999 3344557888999999999999997652 234567888999887764
Q ss_pred CceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHH
Q psy12805 593 SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFML 672 (1429)
Q Consensus 593 ~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l 672 (1429)
.++||+|||||+|.||+||++|||++|++|+++|.++. .++.+.|.++++.+
T Consensus 289 -~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la---------------------------~~G~~gv~~~l~~l 340 (361)
T cd04736 289 -YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLA---------------------------ARGEAGVSEVLRLL 340 (361)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH---------------------------hcCHHHHHHHHHHH
Confidence 38899999999999999999999999999999998774 34679999999999
Q ss_pred HHHHHHHHHhcCCCChhhh
Q psy12805 673 AEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 673 ~~eLr~iMa~mGi~sl~El 691 (1429)
.+||+..|..+|+++++|+
T Consensus 341 ~~el~~~m~l~G~~~i~~l 359 (361)
T cd04736 341 KEEIDRTLALIGCPDIASL 359 (361)
T ss_pred HHHHHHHHHHhCCCCHHHc
Confidence 9999999999999999996
No 74
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.66 E-value=1.3e-15 Score=184.19 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=144.6
Q ss_pred ceEEEccCCCCCcCC------ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchh
Q psy12805 1210 GFIKYSRETAPYRPA------EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDL 1277 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~------~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~l 1277 (1429)
.++.+|||+.|..|+ ...+.+++++.++...|++++|+|+|.++||++..++..|++| ..++|.+++
T Consensus 120 d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~- 198 (438)
T PRK07251 120 ETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEP- 198 (438)
T ss_pred CEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCH-
Confidence 448899999997763 1246788888888778999999999999999999999999998 445555554
Q ss_pred hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1278 IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.++++| +..+.++.+++.. ++.+. +..+ .+++++|.||+|+|++|+...+ +++.+++++
T Consensus 199 ----~~~~~~~~~l~~~GI~i~~~~~V~~i~~~---~~~v~-v~~~--g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~ 268 (438)
T PRK07251 199 ----SVAALAKQYMEEDGITFLLNAHTTEVKND---GDQVL-VVTE--DETYRFDALLYATGRKPNTEPLGLENTDIELT 268 (438)
T ss_pred ----HHHHHHHHHHHHcCCEEEcCCEEEEEEec---CCEEE-EEEC--CeEEEcCEEEEeeCCCCCcccCCchhcCcEEC
Confidence 78888888899888 4567778887542 23322 2222 3479999999999999655444 667788888
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|+|.||+ +++|++|+|||+|||+.++.+.+.|..+|+.++.++.
T Consensus 269 ~~g~i~vd~-~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 269 ERGAIKVDD-YCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred CCCcEEECC-CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 889999997 8999999999999999999999999999999987775
No 75
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.66 E-value=1.4e-15 Score=185.67 Aligned_cols=183 Identities=20% Similarity=0.227 Sum_probs=144.6
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccccchhh
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lv 1278 (1429)
.++.+|||+.|..++ ...+.++++++++...|++++|+|+|.+++|++..++++|++| ++++|.++.
T Consensus 144 d~lViATGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~-- 221 (472)
T PRK05976 144 ENLLIATGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDA-- 221 (472)
T ss_pred CEEEEeCCCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCH--
Confidence 458899999996542 2236678888887778999999999999999999999999998 445566555
Q ss_pred ccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEE-EeCCCeeEEEecEEEEeccccCchhhh-hhccCcccc
Q psy12805 1279 YHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMD-EVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD 1354 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v-~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld 1354 (1429)
++.+.+.+.|+++| +..+.++.+++.. .++..... ..+++.+++++|.||+|+|++|+...+ ++.+++..+
T Consensus 222 ---~~~~~l~~~l~~~gI~i~~~~~v~~i~~~--~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~ 296 (472)
T PRK05976 222 ---ELSKEVARLLKKLGVRVVTGAKVLGLTLK--KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE 296 (472)
T ss_pred ---HHHHHHHHHHHhcCCEEEeCcEEEEEEEe--cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec
Confidence 78888989998888 4567778777531 12222222 234555689999999999999665444 567777764
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+|+|.||+ +++|+.|+|||+|||+..+++++.|+.+|+.||.+|.
T Consensus 297 -~g~i~Vd~-~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 297 -GGFIQIDD-FCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred -CCEEEECC-CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 68899997 8999999999999999888999999999999999984
No 76
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.65 E-value=1.1e-15 Score=197.44 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=140.1
Q ss_pred cceEEEccCCCCCcCCc-----cC---ccchHHHHhh---ccCCCceEEEccccccccHHHHHHhCCCCccccc--cccc
Q psy12805 1209 RGFIKYSRETAPYRPAE-----KR---LKDWDEIYAT---QHVRKGLRIQAARCMECGVPFCQSSHGCPLGNII--PKWN 1275 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~-----~r---v~D~~el~~l---~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iL--p~~d 1275 (1429)
+.++.+|||+.|..|+. .. +.+.+++.++ ...+++++|||+|.+|+|++..++..|.+|..+- |.+.
T Consensus 102 yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 102 YDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 34488999999987632 11 1255555443 4467899999999999999999999999983221 1111
Q ss_pred hhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccc
Q psy12805 1276 DLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTL 1353 (1429)
Q Consensus 1276 ~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLel 1353 (1429)
...+..+.++.+.+.|++.| +.++..++++... .++....+...+ .+++++|+||+|+|++ |+..|++++|+++
T Consensus 182 ~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~--~~~~~~~v~~~d-G~~i~~D~Vv~A~G~r-Pn~~L~~~~Gl~~ 257 (847)
T PRK14989 182 AEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQE--GVEARKTMRFAD-GSELEVDFIVFSTGIR-PQDKLATQCGLAV 257 (847)
T ss_pred hhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEec--CCCceEEEEECC-CCEEEcCEEEECCCcc-cCchHHhhcCccC
Confidence 11233488899999999998 5668888888542 112222223333 3479999999999999 5566899999999
Q ss_pred cCCCCEEecCCCCccCCCCEEEeCCCCCCC----CcHHHHHHHHHHHHHHHH
Q psy12805 1354 DPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ----SLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1354 d~~G~I~VD~~~~~TSvPgVFAAGD~a~g~----~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+++|+|.||+ +++||.|+|||+|||+... .++..|..+|++||.+|.
T Consensus 258 ~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 258 APRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLL 308 (847)
T ss_pred CCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhc
Confidence 9999999997 8999999999999999653 378899999999999885
No 77
>KOG0538|consensus
Probab=99.65 E-value=2.8e-15 Score=167.13 Aligned_cols=256 Identities=20% Similarity=0.201 Sum_probs=175.0
Q ss_pred cccccceeeCCCCCccc-hHHHHHHHHHHHHHhCCcEEecC------------CCCCcccccc---CC------------
Q psy12805 378 AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSNTGE------------GGENPERYLS---SG------------ 429 (1429)
Q Consensus 378 ~~i~~pf~i~aMS~Gsl-S~ea~~aLA~aa~~~G~~~~tGE------------Gg~~~~~~~~---~~------------ 429 (1429)
.+|+.||+|++-.+-.+ .++=-.+-|+||...|+.|..-. ++....+|+. .+
T Consensus 65 ~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raE 144 (363)
T KOG0538|consen 65 QKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAE 144 (363)
T ss_pred ccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHH
Confidence 34789999998666542 24555677899999999775441 2233334431 11
Q ss_pred CcccccceeecccCCCCCChhhhcc----ccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCC
Q psy12805 430 DENQRSAIKQVASGRFGVTSSYLAH----ADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIY 505 (1429)
Q Consensus 430 ~~~~~~~I~Q~asgrfGv~~~~L~~----a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~ 505 (1429)
....+.++..+..-++|.+...+.| -.-+.+|--||-+-++-+.- -..-++.. -..+|.|.+
T Consensus 145 k~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~----~~sg~~~~-------~~~~id~Sl--- 210 (363)
T KOG0538|consen 145 KAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEA----GDSGLAAY-------VSSQIDPSL--- 210 (363)
T ss_pred HcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcc----cchhhhhh-------hhcCCCCCC---
Confidence 1223344556666778877766555 23333343344433221110 00000000 011233334
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+++| |+.||..+ +.||.||-+- .+..|..++++|++.|++|+|+|. +-+....++.+|.|+.++
T Consensus 211 ~W~D----i~wLr~~T-~LPIvvKGil---t~eDA~~Ave~G~~GIIVSNHGgR--------QlD~vpAtI~~L~Evv~a 274 (363)
T KOG0538|consen 211 SWKD----IKWLRSIT-KLPIVVKGVL---TGEDARKAVEAGVAGIIVSNHGGR--------QLDYVPATIEALPEVVKA 274 (363)
T ss_pred Chhh----hHHHHhcC-cCCeEEEeec---ccHHHHHHHHhCCceEEEeCCCcc--------ccCcccchHHHHHHHHHH
Confidence 4455 45778877 8999999432 344688899999999999999876 456667788999999988
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v 665 (1429)
+ .+++++..|||+|+|.||+||++|||..|.+|++.+..+.|. +..+|
T Consensus 275 V-----~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~---------------------------Ge~GV 322 (363)
T KOG0538|consen 275 V-----EGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAK---------------------------GEAGV 322 (363)
T ss_pred h-----cCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccc---------------------------cchhH
Confidence 6 457999999999999999999999999999999999887642 35678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhhcCCCc
Q psy12805 666 INYLFMLAEEVRTHMAKLGIRKFADLVGRTD 696 (1429)
Q Consensus 666 ~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsd 696 (1429)
...+..+.+|+...|+..|++|+.|+ .+..
T Consensus 323 ~~vl~iL~~efe~tmaLsGc~sv~ei-~~~~ 352 (363)
T KOG0538|consen 323 KKVLDILRDEFELTMALSGCRSVKEI-TRNH 352 (363)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhh-Cccc
Confidence 88899999999999999999999996 5554
No 78
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.65 E-value=7.1e-16 Score=186.78 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=135.3
Q ss_pred cceEEEccCCCCCcCCcc--Cc---cchHH---HHhh--ccCCCceEEEccccccccHHHHHHhCCCCc------ccccc
Q psy12805 1209 RGFIKYSRETAPYRPAEK--RL---KDWDE---IYAT--QHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIP 1272 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~~--rv---~D~~e---l~~l--~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp 1272 (1429)
+.++.+|||+.|..|... .+ .+..+ +.+. ...|++++|+|+|++++|++..+++.|++| .++++
T Consensus 106 yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 106 YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred cCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 456899999999877532 22 22222 2222 125789999999999999999999999998 34455
Q ss_pred ccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccC
Q psy12805 1273 KWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELD 1350 (1429)
Q Consensus 1273 ~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lG 1350 (1429)
.+++ ++.+.+.+.|+++| +..+.++++++. .. +...++ ++++||.|++++|++ |+..+++++|
T Consensus 186 ~~d~-----~~~~~l~~~l~~~gI~i~~~~~v~~i~~-----~~---v~~~~g-~~~~~D~vl~a~G~~-pn~~~l~~~g 250 (438)
T PRK13512 186 LMDA-----DMNQPILDELDKREIPYRLNEEIDAING-----NE---VTFKSG-KVEHYDMIIEGVGTH-PNSKFIESSN 250 (438)
T ss_pred hcCH-----HHHHHHHHHHHhcCCEEEECCeEEEEeC-----CE---EEECCC-CEEEeCEEEECcCCC-cChHHHHhcC
Confidence 5554 88889999999988 445677777732 11 222222 368999999999999 5566789999
Q ss_pred ccccCCCCEEecCCCCccCCCCEEEeCCCCC----------CCCcHHHHHHHHHHHHHHHH
Q psy12805 1351 LTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR----------GQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1351 Leld~~G~I~VD~~~~~TSvPgVFAAGD~a~----------g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++++++|+|.||+ +++|+.|+|||+|||+. ..++.+.|..+|+.+|++|.
T Consensus 251 l~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 251 IKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred cccCCCCcEEECC-CcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 9999899999997 79999999999999985 23677889999999999985
No 79
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.64 E-value=5.3e-15 Score=171.01 Aligned_cols=266 Identities=15% Similarity=0.174 Sum_probs=173.1
Q ss_pred CCCCCCCCcccc-----cccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeeccc
Q psy12805 368 PVDISEVEPAAE-----IVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVAS 442 (1429)
Q Consensus 368 ~i~~~~v~~~~~-----i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~as 442 (1429)
-++.+||+..++ +..||+|+||+ ..+|+.||++|++.|.....=+ .+++... +.++++.+
T Consensus 16 ~~s~~dVdlst~~~~~~l~~P~~inAM~-----t~in~~LA~~a~~~G~~~i~hK--~~~E~~~--------sfvrk~k~ 80 (321)
T TIGR01306 16 VNSRSECDTSVTLGKHKFKLPVVPANMQ-----TIIDEKLAEQLAENGYFYIMHR--FDEESRI--------PFIKDMQE 80 (321)
T ss_pred CCCHHHceeeEEECCcEecCcEEeeccc-----hhhhHHHHHHHHHcCCEEEEec--CCHHHHH--------HHHHhccc
Confidence 466788888777 56999999995 3999999999999988777654 3444421 12333332
Q ss_pred CC------CCCChhhhccccchhhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHH
Q psy12805 443 GR------FGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYD 516 (1429)
Q Consensus 443 gr------fGv~~~~L~~a~~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~ 516 (1429)
.. -|++++.+.. ++.+.......+.+.=...|. .-+.+.+.|+.
T Consensus 81 ~~L~v~~SvG~t~e~~~r----------------------------~~~lv~a~~~~d~i~~D~ahg--~s~~~~~~i~~ 130 (321)
T TIGR01306 81 RGLFASISVGVKACEYEF----------------------------VTQLAEEALTPEYITIDIAHG--HSNSVINMIKH 130 (321)
T ss_pred cccEEEEEcCCCHHHHHH----------------------------HHHHHhcCCCCCEEEEeCccC--chHHHHHHHHH
Confidence 21 1222222111 111111100012111111111 11446778889
Q ss_pred HHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC--hHHHHHHHHHHHHhcCCCCc
Q psy12805 517 LKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLRSR 594 (1429)
Q Consensus 517 Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP--~~laL~ev~q~L~~~gLR~~ 594 (1429)
+|+.+|...|+++ +++....|..+.++|||.|.++-+.|++.+..... -.|.| .+.++.++.+.. +
T Consensus 131 i~~~~p~~~vi~G---nV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~--g~g~~~~~l~ai~ev~~a~-------~ 198 (321)
T TIGR01306 131 IKTHLPDSFVIAG---NVGTPEAVRELENAGADATKVGIGPGKVCITKIKT--GFGTGGWQLAALRWCAKAA-------R 198 (321)
T ss_pred HHHhCCCCEEEEe---cCCCHHHHHHHHHcCcCEEEECCCCCccccceeee--ccCCCchHHHHHHHHHHhc-------C
Confidence 9998865446666 56677788999999999999996667776655432 22333 567788877643 5
Q ss_pred eEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC--------------
Q psy12805 595 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG-------------- 660 (1429)
Q Consensus 595 V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g-------------- 660 (1429)
++||+|||||++.|++||+++|||+|++|+. +| | +.++|-.+...+..+.|.|-+
T Consensus 199 ~pVIadGGIr~~~Di~KALa~GAd~Vmig~~--~a-g--------~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~e 267 (321)
T TIGR01306 199 KPIIADGGIRTHGDIAKSIRFGASMVMIGSL--FA-G--------HEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVE 267 (321)
T ss_pred CeEEEECCcCcHHHHHHHHHcCCCEEeechh--hc-C--------cccCCCceEeeCCeEHhhhcCchhhhccccccccc
Confidence 8999999999999999999999999999972 22 2 334555555444332222211
Q ss_pred -------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccccC
Q psy12805 661 -------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702 (1429)
Q Consensus 661 -------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~ 702 (1429)
....+.+++..+..+||.-|..+|.++|.|+. ..+++....
T Consensus 268 g~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~ 315 (321)
T TIGR01306 268 GKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKN 315 (321)
T ss_pred ceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEec
Confidence 01247888999999999999999999999985 777776543
No 80
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.62 E-value=3.4e-15 Score=178.51 Aligned_cols=183 Identities=14% Similarity=0.054 Sum_probs=132.0
Q ss_pred ceEEEccCCCCCcCC-----ccCcc---chHHHH---hhccCCCceEEEccccccccHHHHHHhCCCCccccccc--cch
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLK---DWDEIY---ATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPK--WND 1276 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~---D~~el~---~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~--~d~ 1276 (1429)
.++.+|||+.|..++ ..++. +.++.. +....+++++|+|+|+++||++..+...|++|..+-+. ...
T Consensus 102 d~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 102 DQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 348899999987653 12222 344443 33335789999999999999999999999998433221 111
Q ss_pred hhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1277 LIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1277 lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
..+...+.+.+.+.++++| +.++.++++++. ++.+. +...++ ++++||.|++++|++ |+..|++++|++.+
T Consensus 182 ~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~----~~~~~-v~l~~g-~~i~aD~Vv~a~G~~-pn~~l~~~~gl~~~ 254 (396)
T PRK09754 182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD----GEKVE-LTLQSG-ETLQADVVIYGIGIS-ANDQLAREANLDTA 254 (396)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc----CCEEE-EEECCC-CEEECCEEEECCCCC-hhhHHHHhcCCCcC
Confidence 1233467788888888888 455777777743 22232 223333 369999999999999 45668888898875
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCC---------CCcHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRG---------QSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g---------~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
+.|.||+ +++||.|+|||+|||+.. ..++..|..||+.||.||..
T Consensus 255 --~gi~vd~-~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 255 --NGIVIDE-ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred --CCEEECC-CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 4599997 899999999999999852 24578899999999999964
No 81
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.62 E-value=6e-15 Score=180.39 Aligned_cols=169 Identities=34% Similarity=0.491 Sum_probs=121.1
Q ss_pred CCCceEEEccccccccHHHHHHhCCC-Ccccc----ccccch--hhccchHHH-HHHHHHHhCC--CCCCcEEEEEEEee
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGC-PLGNI----IPKWND--LIYHNNWSE-ALNQLLQTNN--FPAGIKTVKVEWTK 1309 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~i----Lp~~d~--lvf~~e~~~-al~~~Le~~G--~~~gv~v~~Ve~~k 1309 (1429)
.+++++|+|+|.++++++..+.+.|. +|... +|..+. ......+.. ...+.+++.| +..+..++++..
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-- 357 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-- 357 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc--
Confidence 46899999999999999987777776 45311 111110 000001111 1233455566 445666666642
Q ss_pred cCCCceEEEE-------------eCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEe
Q psy12805 1310 DATGRWKMDE-------------VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAA 1376 (1429)
Q Consensus 1310 ~~~G~~~~v~-------------~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAA 1376 (1429)
++|++..+. .++++++++||.||+|+|++|+...|++.+|++++++|++.+|+.+++||.|+|||+
T Consensus 358 -~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~ 436 (471)
T PRK12810 358 -ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAA 436 (471)
T ss_pred -cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEc
Confidence 234432111 235567899999999999996656688999999999999999844799999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy12805 1377 GDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411 (1429)
Q Consensus 1377 GD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p 1411 (1429)
|||+.++.++++|+.+|+.||.+|+++|.+++.+|
T Consensus 437 GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 471 (471)
T PRK12810 437 GDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTALP 471 (471)
T ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999888999999999999999999999877654
No 82
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.62 E-value=5e-15 Score=178.72 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=123.2
Q ss_pred CceEEEccccccccHHHHHHh--------------CCCCc------cccccccchhhccchHHHHHHHHHHhCC--CCCC
Q psy12805 1242 KGLRIQAARCMECGVPFCQSS--------------HGCPL------GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAG 1299 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~--------------~Gc~V------~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~g 1299 (1429)
++++|+|+|.+|+|++..++. .+++| ++++|.+++ ++++.+.+.|++.| +..+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~-----~~~~~~~~~L~~~gV~v~~~ 248 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ-----ALRKYGQRRLRRLGVDIRTK 248 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCH-----HHHHHHHHHHHHCCCEEEeC
Confidence 389999999999999988764 25666 356666555 78899999999988 4557
Q ss_pred cEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCc-cCCCCEEEeCC
Q psy12805 1300 IKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYL-TTVPRVYAAGD 1378 (1429)
Q Consensus 1300 v~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~-TSvPgVFAAGD 1378 (1429)
.+++++.. +. +.+.++ +++++|+||+++|.+|+ .+++.++++++++|+|.||+ +++ |+.|+|||+||
T Consensus 249 ~~v~~v~~-----~~---v~~~~g-~~i~~d~vi~~~G~~~~--~~~~~~~l~~~~~G~I~Vd~-~l~~~~~~~IfAiGD 316 (424)
T PTZ00318 249 TAVKEVLD-----KE---VVLKDG-EVIPTGLVVWSTGVGPG--PLTKQLKVDKTSRGRISVDD-HLRVKPIPNVFALGD 316 (424)
T ss_pred CeEEEEeC-----CE---EEECCC-CEEEccEEEEccCCCCc--chhhhcCCcccCCCcEEeCC-CcccCCCCCEEEEec
Confidence 77777732 12 223332 37999999999999854 47888999999899999998 677 69999999999
Q ss_pred CCCC-----CCcHHHHHHHHHHHHHHHHHHHhCCC-CCCCC
Q psy12805 1379 CRRG-----QSLVVWAISEGRQAAREIDSFLMGTS-TLPDV 1413 (1429)
Q Consensus 1379 ~a~g-----~~lvv~Ai~qGr~AA~nI~~~L~g~~-~~p~~ 1413 (1429)
|+.. +++...|++||+.+|+||.+.+.+.+ ..|..
T Consensus 317 ~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~ 357 (424)
T PTZ00318 317 CAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFV 357 (424)
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCe
Confidence 9973 56889999999999999999999875 55554
No 83
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.62 E-value=5.6e-15 Score=178.59 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=136.8
Q ss_pred cceEEEccCCCCCcCCc-----cCc---cchHHHHhh---c--cCCCceEEEccccccccHHHHHHhCCCCccc------
Q psy12805 1209 RGFIKYSRETAPYRPAE-----KRL---KDWDEIYAT---Q--HVRKGLRIQAARCMECGVPFCQSSHGCPLGN------ 1269 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~-----~rv---~D~~el~~l---~--~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~------ 1269 (1429)
..++.+|||+.|..|.. ..+ .++.+..++ . ..+++++|+|+|++++|++..++..|++|..
T Consensus 104 yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 104 YDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 45689999999876632 222 233333332 1 2468999999999999999999999999843
Q ss_pred cccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhh
Q psy12805 1270 IIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIAN 1347 (1429)
Q Consensus 1270 iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle 1347 (1429)
+++. .+..++.+.+.+.+++.| +..+.++.+++. ++....+..+++ +++||.||+|+|+. |+..+++
T Consensus 184 ~l~~----~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~----~~~~~~v~~~~~--~i~~d~vi~a~G~~-p~~~~l~ 252 (444)
T PRK09564 184 ILPD----SFDKEITDVMEEELRENGVELHLNEFVKSLIG----EDKVEGVVTDKG--EYEADVVIVATGVK-PNTEFLE 252 (444)
T ss_pred cCch----hcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec----CCcEEEEEeCCC--EEEcCEEEECcCCC-cCHHHHH
Confidence 3331 133488899999999988 456777777742 233222233332 69999999999998 5567889
Q ss_pred ccCccccCCCCEEecCCCCccCCCCEEEeCCCCCC----------CCcHHHHHHHHHHHHHHHH
Q psy12805 1348 ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG----------QSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1348 ~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g----------~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++|++++++|+|.||+ +++|+.|+|||+|||+.. +++.+.|..||+.+|.||.
T Consensus 253 ~~gl~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 253 DTGLKTLKNGAIIVDE-YGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred hcCccccCCCCEEECC-CcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 9999998889999997 789999999999999863 4678999999999999986
No 84
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.60 E-value=9.6e-15 Score=179.26 Aligned_cols=172 Identities=37% Similarity=0.628 Sum_probs=119.1
Q ss_pred CCCceEEEccccccccHHHHHHhCCC-Ccccc--ccccchhhcc----c------hHHHHHHHHHHhCCC---CCCcEEE
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGC-PLGNI--IPKWNDLIYH----N------NWSEALNQLLQTNNF---PAGIKTV 1303 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~i--Lp~~d~lvf~----~------e~~~al~~~Le~~G~---~~gv~v~ 1303 (1429)
..++++|+|+|.++++++....+.|. .|..+ .|........ . ++..+.++..+..|+ ..+..++
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~ 361 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTK 361 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcE
Confidence 46899999999999998766666664 45221 1111100000 0 122333333333331 1122222
Q ss_pred EE----------------EEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCc
Q psy12805 1304 KV----------------EWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYL 1367 (1429)
Q Consensus 1304 ~V----------------e~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~ 1367 (1429)
++ +...+++|+...+...+++++++||+||+|+|+.+|+..+++.+|++++++|.+.+++.+++
T Consensus 362 ~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~ 441 (485)
T TIGR01317 362 EFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYS 441 (485)
T ss_pred EEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCce
Confidence 22 11223455555555667777899999999999975667788999999998999977655899
Q ss_pred cCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy12805 1368 TTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411 (1429)
Q Consensus 1368 TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p 1411 (1429)
||+|+|||+|||+.++.++++|+.+|+.||.+|++||.+.+.+|
T Consensus 442 Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 485 (485)
T TIGR01317 442 TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSVLP 485 (485)
T ss_pred ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999877654
No 85
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.58 E-value=1.8e-14 Score=171.23 Aligned_cols=215 Identities=18% Similarity=0.139 Sum_probs=156.3
Q ss_pred ccCccceecccccc--cceEEEccCCCCCcC----------CccCccchHHHHhhcc--------CCC-----ceEEEcc
Q psy12805 1195 GADKKKVDRSIDKT--RGFIKYSRETAPYRP----------AEKRLKDWDEIYATQH--------VRK-----GLRIQAA 1249 (1429)
Q Consensus 1195 ~~~~k~~~~~~~k~--~gf~kiAtGs~P~~p----------~~~rv~D~~el~~l~~--------~pk-----~lvVIGa 1249 (1429)
+..+|++....... +-++.++.|+.+..+ ..+.+.|..++++... .++ .++|+||
T Consensus 84 D~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGg 163 (405)
T COG1252 84 DRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163 (405)
T ss_pred cccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECC
Confidence 33444444333333 445889999988765 2233344433332211 222 6999999
Q ss_pred ccccccHHHHHHhCC-------------CCc------cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEe
Q psy12805 1250 RCMECGVPFCQSSHG-------------CPL------GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWT 1308 (1429)
Q Consensus 1250 GcIgcE~a~c~s~~G-------------c~V------~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~ 1308 (1429)
|.-|+|++.-+...- ..| +++||.+++ +++++.++.|++.| +.++..|++|+.
T Consensus 164 G~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----~l~~~a~~~L~~~GV~v~l~~~Vt~v~~- 237 (405)
T COG1252 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----KLSKYAERALEKLGVEVLLGTPVTEVTP- 237 (405)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----HHHHHHHHHHHHCCCEEEcCCceEEECC-
Confidence 999999988766310 122 788888887 99999999999999 567888888843
Q ss_pred ecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhc-cCccccCCCCEEecCCCCccCCCCEEEeCCCCCC-----
Q psy12805 1309 KDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG----- 1382 (1429)
Q Consensus 1309 k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g----- 1382 (1429)
++ +....++++|++|++|||+|.+++ .++++ .+++.|++|++.||+....++.|+|||+|||+..
T Consensus 238 ---~~----v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p 308 (405)
T COG1252 238 ---DG----VTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRP 308 (405)
T ss_pred ---Cc----EEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCC
Confidence 33 222222327999999999999964 46777 4899999999999985555699999999999852
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccc
Q psy12805 1383 -QSLVVWAISEGRQAAREIDSFLMGTSTLPDVGGVITPYQSTG 1424 (1429)
Q Consensus 1383 -~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p~~g~v~~~~~r~G 1424 (1429)
|+.+..|.+||+.+|+||.+.+.|.+.+|..+...+...++|
T Consensus 309 ~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~Gtl~~lG 351 (405)
T COG1252 309 VPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDKGTLASLG 351 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccceEEEEEcc
Confidence 578999999999999999999999999988766555555544
No 86
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.58 E-value=1.3e-14 Score=174.80 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=135.0
Q ss_pred cceEEEccCCCCCcCCc-----cCccchH------HHHhhc--cCCCceEEEccccccccHHHHHHhCCCCccccccccc
Q psy12805 1209 RGFIKYSRETAPYRPAE-----KRLKDWD------EIYATQ--HVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWN 1275 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~-----~rv~D~~------el~~l~--~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d 1275 (1429)
..++.+|||+.|..|+. .++.+++ .+.... ..+++++|+|+|++++|++.-+++.|++|..+-+.-.
T Consensus 92 yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 92 YDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 45689999999987632 2333222 222222 3578999999999999999988888998833322110
Q ss_pred --hhhccchHHHHHHHHHHhCCC--CCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCc
Q psy12805 1276 --DLIYHNNWSEALNQLLQTNNF--PAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDL 1351 (1429)
Q Consensus 1276 --~lvf~~e~~~al~~~Le~~G~--~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGL 1351 (1429)
...+..++.+.+.+.|++.|+ ..+..+.++.. ++.+ +...+ .+++++|.|++++|++ |+..+++++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~~~--v~~~~-g~~i~~D~vi~a~G~~-p~~~~l~~~gl 243 (427)
T TIGR03385 172 ILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG----EERV--KVFTS-GGVYQADMVILATGIK-PNSELAKDSGL 243 (427)
T ss_pred cCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec----CCCE--EEEcC-CCEEEeCEEEECCCcc-CCHHHHHhcCc
Confidence 011234788888889998884 45677777743 2332 12222 2369999999999999 55678899999
Q ss_pred cccCCCCEEecCCCCccCCCCEEEeCCCCCC----------CCcHHHHHHHHHHHHHHHH
Q psy12805 1352 TLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG----------QSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1352 eld~~G~I~VD~~~~~TSvPgVFAAGD~a~g----------~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+++++|+|.||+ +++|+.|+|||+|||+.. .++++.|.+||+.||+||.
T Consensus 244 ~~~~~G~i~vd~-~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 244 KLGETGAIWVNE-KFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred ccCCCCCEEECC-CcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999997 799999999999999852 3578899999999999995
No 87
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.56 E-value=3.7e-14 Score=172.71 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=132.6
Q ss_pred ceEEEccCCC-CCcCC-----ccCccchHHHHhhc---------cCCCceEEEccccccccHHHHHHhCCC-Cccccccc
Q psy12805 1210 GFIKYSRETA-PYRPA-----EKRLKDWDEIYATQ---------HVRKGLRIQAARCMECGVPFCQSSHGC-PLGNIIPK 1273 (1429)
Q Consensus 1210 gf~kiAtGs~-P~~p~-----~~rv~D~~el~~l~---------~~pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~iLp~ 1273 (1429)
.++.+|||+. |..+. ...+.+..+++... ..+++++|+|+|.++++++..+.+.|. +|..+-+.
T Consensus 227 d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 227 DAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4578999985 44321 12244444443322 146899999999999999999988888 56433221
Q ss_pred cchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCc--eEEEE---------------eCCCeeEEEecEEEE
Q psy12805 1274 WNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGR--WKMDE---------------VPNSEKIFKCDLVLL 1334 (1429)
Q Consensus 1274 ~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~--~~~v~---------------~~gse~~ieaDlVLl 1334 (1429)
-.. .+. .. ....+.+++.| +.++..++++... .++. +.... .++++++++||+||+
T Consensus 307 ~~~-~~~-~~-~~~~~~~~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~ 381 (457)
T PRK11749 307 GRE-EMP-AS-EEEVEHAKEEGVEFEWLAAPVEILGD--EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIK 381 (457)
T ss_pred Ccc-cCC-CC-HHHHHHHHHCCCEEEecCCcEEEEec--CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEE
Confidence 000 000 01 11234456677 4456666666432 1111 11111 135667899999999
Q ss_pred eccccCchhhhh-hccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy12805 1335 AMGFLGPERYIA-NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTS 1408 (1429)
Q Consensus 1335 AiG~~pp~~~Ll-e~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~ 1408 (1429)
|+|++|+ ..++ +..+++++++|+|.||+.+++||.|+|||+|||+.++.+++.|+.+|+.||.+|+++|+++.
T Consensus 382 a~G~~p~-~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 382 AIGQTPN-PLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred CccCCCC-chhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999954 5554 46789999999999997578999999999999998888999999999999999999998864
No 88
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.56 E-value=2.8e-14 Score=183.70 Aligned_cols=192 Identities=17% Similarity=0.231 Sum_probs=132.3
Q ss_pred cceEEEccCC-CCCcCC-----ccCccchHHHHhhc--------------cCCCceEEEccccccccHHHHHHhCCCC-c
Q psy12805 1209 RGFIKYSRET-APYRPA-----EKRLKDWDEIYATQ--------------HVRKGLRIQAARCMECGVPFCQSSHGCP-L 1267 (1429)
Q Consensus 1209 ~gf~kiAtGs-~P~~p~-----~~rv~D~~el~~l~--------------~~pk~lvVIGaGcIgcE~a~c~s~~Gc~-V 1267 (1429)
+..+.+|||+ .|..++ ...+.+..+++... ...++++|+|+|.++++++....++|++ |
T Consensus 518 ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 597 (752)
T PRK12778 518 FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERV 597 (752)
T ss_pred CCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 3458899998 466542 23456666655421 1348999999999999999999999987 6
Q ss_pred cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCce-------------------EEEEeCCCeeE
Q psy12805 1268 GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRW-------------------KMDEVPNSEKI 1326 (1429)
Q Consensus 1268 ~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~-------------------~~v~~~gse~~ 1326 (1429)
..+-+.-.. ...... ..+ +.+++.| +..+..++++.. +++|++ ..+..++++++
T Consensus 598 tlv~r~~~~-~~~~~~-~e~-~~~~~~GV~i~~~~~~~~i~~--~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~ 672 (752)
T PRK12778 598 TIVYRRSEE-EMPARL-EEV-KHAKEEGIEFLTLHNPIEYLA--DEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFT 672 (752)
T ss_pred EEeeecCcc-cCCCCH-HHH-HHHHHcCCEEEecCcceEEEE--CCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEE
Confidence 433222100 000011 112 2345566 333444444432 122322 22223456678
Q ss_pred EEecEEEEeccccCchhhhhhc-cCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1327 FKCDLVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1327 ieaDlVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
++||+||+|+|+.|+ ..+++. .|++++++|+|.||+ .++||.|+|||+|||+.++.++++|+.+|+.||.+|+++|+
T Consensus 673 i~~D~Vi~A~G~~p~-~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 673 VDVDLVIVSVGVSPN-PLVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EECCEEEECcCCCCC-ccccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999954 456555 489999999999997 67999999999999999999999999999999999999997
Q ss_pred CC
Q psy12805 1406 GT 1407 (1429)
Q Consensus 1406 g~ 1407 (1429)
++
T Consensus 751 ~~ 752 (752)
T PRK12778 751 SK 752 (752)
T ss_pred cC
Confidence 63
No 89
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.56 E-value=2.7e-14 Score=186.47 Aligned_cols=194 Identities=17% Similarity=0.121 Sum_probs=132.8
Q ss_pred cceEEEccCCC-CCcCC-----ccCccchHHHHhhc----------------cCCCceEEEccccccccHHHHHHhCCCC
Q psy12805 1209 RGFIKYSRETA-PYRPA-----EKRLKDWDEIYATQ----------------HVRKGLRIQAARCMECGVPFCQSSHGCP 1266 (1429)
Q Consensus 1209 ~gf~kiAtGs~-P~~p~-----~~rv~D~~el~~l~----------------~~pk~lvVIGaGcIgcE~a~c~s~~Gc~ 1266 (1429)
+..+.++||+. |..+. ...+.+..+++... ...++++|||+|.++++++....+.|++
T Consensus 393 yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~ 472 (944)
T PRK12779 393 FWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN 472 (944)
T ss_pred CCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 44588999984 65432 23355555555321 1347999999999999999999999998
Q ss_pred ccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEe------------------ecCCCceEEEEeCCCeeE
Q psy12805 1267 LGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWT------------------KDATGRWKMDEVPNSEKI 1326 (1429)
Q Consensus 1267 V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~------------------k~~~G~~~~v~~~gse~~ 1326 (1429)
|..+..+-.. .-..+...+...+ +.| |.+...++++... .+.+|+...+. +|++++
T Consensus 473 Vtlv~rr~~~--~mpa~~~e~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~-~G~e~~ 548 (944)
T PRK12779 473 VTIVYRRTKS--EMPARVEELHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP-TGEIER 548 (944)
T ss_pred EEEEEecCcc--cccccHHHHHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec-CCceEE
Confidence 7433222110 0012223333333 345 3344444444321 11223322222 466678
Q ss_pred EEecEEEEeccccCchhhh-hhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1327 FKCDLVLLAMGFLGPERYI-ANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1327 ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
++||+||+|+|+.|+. .+ ....|++++++|+|+||+..++||+|+|||+|||+++++++++|+++|+.||.+|++||.
T Consensus 549 i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 549 VPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred EECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999654 34 345689999999999997678999999999999999999999999999999999999987
Q ss_pred CC
Q psy12805 1406 GT 1407 (1429)
Q Consensus 1406 g~ 1407 (1429)
..
T Consensus 628 ~~ 629 (944)
T PRK12779 628 FT 629 (944)
T ss_pred cc
Confidence 53
No 90
>KOG4716|consensus
Probab=99.56 E-value=7.4e-15 Score=165.52 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=148.3
Q ss_pred eEEEccCCCCCcC----CccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCc-----cccccccchhhccc
Q psy12805 1211 FIKYSRETAPYRP----AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPL-----GNIIPKWNDLIYHN 1281 (1429)
Q Consensus 1211 f~kiAtGs~P~~p----~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V-----~~iLp~~d~lvf~~ 1281 (1429)
.+.|+||.+|+-| +.+--.++|+++.+...|.+-.|+|+|++++|.|..++.+|.+| +-+|+.||.
T Consensus 164 ~fvIatG~RPrYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDq----- 238 (503)
T KOG4716|consen 164 NFVIATGLRPRYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQ----- 238 (503)
T ss_pred eEEEEecCCCCCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccH-----
Confidence 3679999999877 34556899999999999999999999999999999999999988 444556666
Q ss_pred hHHHHHHHHHHhCCCC--CCcEEEEEEEeecCCCceEEEE---eCCCeeEEEecEEEEeccccCchhhh-hhccCcccc-
Q psy12805 1282 NWSEALNQLLQTNNFP--AGIKTVKVEWTKDATGRWKMDE---VPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLD- 1354 (1429)
Q Consensus 1282 e~~~al~~~Le~~G~~--~gv~v~~Ve~~k~~~G~~~~v~---~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld- 1354 (1429)
++.+.+.+.+++.|++ ......+|+.. ++|++.... ..+++-+-+.|.|+||+|+.+...++ |++.|+++|
T Consensus 239 dmae~v~~~m~~~Gikf~~~~vp~~Veq~--~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ 316 (503)
T KOG4716|consen 239 DMAELVAEHMEERGIKFLRKTVPERVEQI--DDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNE 316 (503)
T ss_pred HHHHHHHHHHHHhCCceeecccceeeeec--cCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecc
Confidence 9999999999999954 45556667654 355433221 22333356789999999999887888 999999996
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
+.|.|.+|+ .-+||+|+|||+||+.. .|.+...|++.||..|+.+.
T Consensus 317 ks~KI~v~~-~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716|consen 317 KSGKIPVDD-EEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred cCCccccCh-HHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence 457788886 78999999999999986 58899999999999988764
No 91
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.55 E-value=4.2e-14 Score=167.89 Aligned_cols=184 Identities=14% Similarity=0.140 Sum_probs=132.0
Q ss_pred ceEEEccCCCCCcCCccC------ccchHHH---HhhccCCCceEEEccccccccHHHHHHhCCCCccccccc--cchhh
Q psy12805 1210 GFIKYSRETAPYRPAEKR------LKDWDEI---YATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPK--WNDLI 1278 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~r------v~D~~el---~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~--~d~lv 1278 (1429)
.++.+|||+.|..|+... +.+.++. .......++++|+|+|.++||++..+...|++|..+-+. .....
T Consensus 101 d~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~ 180 (377)
T PRK04965 101 DKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180 (377)
T ss_pred CEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh
Confidence 348899999998774221 2233333 233335689999999999999999999889988333221 11111
Q ss_pred ccchHHHHHHHHHHhCCC--CCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCC
Q psy12805 1279 YHNNWSEALNQLLQTNNF--PAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPR 1356 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G~--~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~ 1356 (1429)
+..++.+.+.+.+++.|+ ..+.++.+++.. ++.+.. ...+ .++++||.||+|+|.+ |+..+++.+|++++ +
T Consensus 181 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~---~~~~~v-~~~~-g~~i~~D~vI~a~G~~-p~~~l~~~~gl~~~-~ 253 (377)
T PRK04965 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT---DSGIRA-TLDS-GRSIEVDAVIAAAGLR-PNTALARRAGLAVN-R 253 (377)
T ss_pred CCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc---CCEEEE-EEcC-CcEEECCEEEECcCCC-cchHHHHHCCCCcC-C
Confidence 224678888888988884 456777777542 223332 2333 3479999999999999 56668888999986 4
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCC----CcHHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQ----SLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~----~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
| |.||+ +++||.|+|||+|||+... ..+..|..||+.||+||..
T Consensus 254 g-i~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 254 G-IVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred C-EEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcC
Confidence 6 99997 8999999999999998632 3567799999999999964
No 92
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.55 E-value=5.8e-14 Score=178.04 Aligned_cols=198 Identities=18% Similarity=0.215 Sum_probs=135.3
Q ss_pred ceEEEccCCCCCc-C-----CccCccchHHHHhh------ccCCCceEEEccccccccHHHHHHhCCCC-ccccccccch
Q psy12805 1210 GFIKYSRETAPYR-P-----AEKRLKDWDEIYAT------QHVRKGLRIQAARCMECGVPFCQSSHGCP-LGNIIPKWND 1276 (1429)
Q Consensus 1210 gf~kiAtGs~P~~-p-----~~~rv~D~~el~~l------~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~-V~~iLp~~d~ 1276 (1429)
..+.+|||+.+.+ + +...+.+..+++.. ....++++|+|+|.++++++..+.++|.+ |..+.+....
T Consensus 280 DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~ 359 (652)
T PRK12814 280 DAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE 359 (652)
T ss_pred CEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 4577899987542 2 12223444444432 23568999999999999999988888874 5333222110
Q ss_pred hhccchHHHHHHHHHHhCC--CCCCcEEEEEEEe---------------ecCCCceEEEEeCCCeeEEEecEEEEecccc
Q psy12805 1277 LIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWT---------------KDATGRWKMDEVPNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1277 lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~---------------k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~ 1339 (1429)
.+ . .....+.+.+ +.| |..+..++++... .+.+|+...+..++++.++++|.||+|+|+.
T Consensus 360 ~m-p-a~~~ei~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 360 EM-P-ANRAEIEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred cC-C-CCHHHHHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 00 0 1112233333 345 3334444444321 0122332233345666789999999999999
Q ss_pred CchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy12805 1340 GPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411 (1429)
Q Consensus 1340 pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p 1411 (1429)
|+..+++..|++++++|+|.||+.+++||.|+|||+|||+.++.+++.|+++|+.||.+|+++|.+++..+
T Consensus 437 -p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~~~~~ 507 (652)
T PRK12814 437 -VDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGKPVTA 507 (652)
T ss_pred -CCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55668888999999999999997679999999999999999999999999999999999999999976543
No 93
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.55 E-value=7.1e-14 Score=183.88 Aligned_cols=197 Identities=20% Similarity=0.227 Sum_probs=133.9
Q ss_pred cceEEEccCCC-CCcCC-----ccCccchHHHHhhc---------------cCCCceEEEccccccccHHHHHHhCCCCc
Q psy12805 1209 RGFIKYSRETA-PYRPA-----EKRLKDWDEIYATQ---------------HVRKGLRIQAARCMECGVPFCQSSHGCPL 1267 (1429)
Q Consensus 1209 ~gf~kiAtGs~-P~~p~-----~~rv~D~~el~~l~---------------~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V 1267 (1429)
+..+.+|||+. |..++ ...+.+..+++... ..+++++|||+|.++++++....++|.+.
T Consensus 518 yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~ 597 (1006)
T PRK12775 518 FDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPT 597 (1006)
T ss_pred CCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence 34588999984 65542 23455666554331 24689999999999999988888899874
Q ss_pred -cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEE------------------eCCCeeE
Q psy12805 1268 -GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDE------------------VPNSEKI 1326 (1429)
Q Consensus 1268 -~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~------------------~~gse~~ 1326 (1429)
..+.++.+.-. ......+ +.+++.| |..+..++++.. +++|++..+. .++++++
T Consensus 598 Vtiv~rr~~~em--~a~~~e~-~~a~eeGI~~~~~~~p~~i~~--~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 598 VRCVYRRSEAEA--PARIEEI-RHAKEEGIDFFFLHSPVEIYV--DAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred EEEEeecCcccC--CCCHHHH-HHHHhCCCEEEecCCcEEEEe--CCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 32332222100 0111112 2345566 344455555532 2233322110 1344568
Q ss_pred EEecEEEEeccccCchhhhhhc-cCccccCCCCEEecC----CCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy12805 1327 FKCDLVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVE----KTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1327 ieaDlVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~----~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~ 1401 (1429)
++||+||+|+|+.|+ ..++.. .|++++++|+|.+|+ .+++||+|+|||+|||+.++.++++|+.+|+.||.+|+
T Consensus 673 i~~D~Vi~AiG~~p~-~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 673 LECDTVIYALGTKAN-PIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred EEcCEEEECCCcCCC-hhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999955 445443 588999999999986 37899999999999999999999999999999999999
Q ss_pred HHHhCCCCCC
Q psy12805 1402 SFLMGTSTLP 1411 (1429)
Q Consensus 1402 ~~L~g~~~~p 1411 (1429)
++|.+....+
T Consensus 752 ~~L~~~~~~~ 761 (1006)
T PRK12775 752 TYLRLGKKWP 761 (1006)
T ss_pred HHHhcCCCcC
Confidence 9999865443
No 94
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.54 E-value=2.3e-14 Score=161.82 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=104.4
Q ss_pred HHHHHhhccCCCCCCCCC--CCCccc----ccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 11 EEFRLLAEKCQLEVLGQH--ENTRKC----VAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~~r~----~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
....+.|.||+||....+ .|||+. ++|||||...+.+++|+..+-. .-...|||..+-
T Consensus 77 ~~~~igH~R~aT~g~~~~~n~qP~~~~~~~lvhNG~I~N~~~lr~~L~~~g~----------------~~~~~sDsEvi~ 140 (249)
T cd01907 77 GYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNREYLERFGY----------------KFETETDTEVIA 140 (249)
T ss_pred EEEEEEEEeccCCCCCCccCCCCeecCCEEEEeCCeecCHHHHHHHHHhcCC----------------CCCCCCHHHHHH
Confidence 457899999999986432 266665 8999999999999999975422 123567776654
Q ss_pred H--------------HHHhhCccccccCCCCCHHHHHHHHH--HhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEE
Q psy12805 85 C--------------AVMTMVPEAWQNDGTMPDEKRDFYNW--AACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFY 148 (1429)
Q Consensus 85 ~--------------a~~~~~p~a~~~~~~~~~~~~~~y~~--~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~ 148 (1429)
+ |++++| .|++++++||.+ ....|+.||||.++++.|++.+.+..||+|+||..|.
T Consensus 141 ~ll~~~~~~~g~~~~a~~~~i--------~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~~~~~RD~~G~rPL~~g 212 (249)
T cd01907 141 YYLDLLLRKGGLPLEYYKHII--------RMPEEERELLLALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVVA 212 (249)
T ss_pred HHHHHHHHhCCChHHHHHHHh--------cCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeCCeEEEEecCCCCccEEEE
Confidence 4 444444 689999999988 5678999999999999999999999999999999654
Q ss_pred EEeCCEEEEEeeccccc
Q psy12805 149 VLKDNVMVMASEVGVYD 165 (1429)
Q Consensus 149 ~~~d~~~~~~se~g~~~ 165 (1429)
.+|+.+++|||...+.
T Consensus 213 -~~~~~~~~ASE~~al~ 228 (249)
T cd01907 213 -ETDDYVAIASEECAIR 228 (249)
T ss_pred -EECCEEEEEEcHHHHh
Confidence 5577899999999987
No 95
>PRK10262 thioredoxin reductase; Provisional
Probab=99.54 E-value=2e-14 Score=166.79 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=132.8
Q ss_pred ceEEEccCCCCCcCCccC--------ccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccc
Q psy12805 1210 GFIKYSRETAPYRPAEKR--------LKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHN 1281 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~r--------v~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~ 1281 (1429)
.++.+|||+.|..|+... +..+.........+++++|+|+|+++++++.-++..|++|..+-+. +...+..
T Consensus 107 d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~-~~~~~~~ 185 (321)
T PRK10262 107 DALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR-DGFRAEK 185 (321)
T ss_pred CEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC-CccCCCH
Confidence 458899999987763221 1111111122245789999999999999999999889888543322 1111123
Q ss_pred hHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEe-----CCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1282 NWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEV-----PNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1282 e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~-----~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
.+.+.+.+.|++.+ +..+..+++++.. ++.+..+.+ .++.+++++|.||+++|++| +..+++. +++++
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~---~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p-~~~l~~~-~l~~~ 260 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGD---QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP-NTAIFEG-QLELE 260 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcC---CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc-ChhHhhc-ccccc
Confidence 46677777777777 4457777777542 222211111 12345799999999999995 5556553 56664
Q ss_pred CCCCEEecC----CCCccCCCCEEEeCCCCCC-CCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy12805 1355 PRSNYSTVE----KTYLTTVPRVYAAGDCRRG-QSLVVWAISEGRQAAREIDSFLMGTS 1408 (1429)
Q Consensus 1355 ~~G~I~VD~----~~~~TSvPgVFAAGD~a~g-~~lvv~Ai~qGr~AA~nI~~~L~g~~ 1408 (1429)
+|+|.||+ .+++||+|+|||+|||+.. ..++..|+++|+.||..|+++|.+..
T Consensus 261 -~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~~ 318 (321)
T PRK10262 261 -NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred -CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhcc
Confidence 58899985 2579999999999999964 56888899999999999999997653
No 96
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.54 E-value=1.1e-13 Score=163.08 Aligned_cols=189 Identities=20% Similarity=0.173 Sum_probs=131.6
Q ss_pred cceEEEccCC-CCCcCC-----ccCccchHHHHhh-----------ccC----CCceEEEccccccccHHHHHHhCCCC-
Q psy12805 1209 RGFIKYSRET-APYRPA-----EKRLKDWDEIYAT-----------QHV----RKGLRIQAARCMECGVPFCQSSHGCP- 1266 (1429)
Q Consensus 1209 ~gf~kiAtGs-~P~~p~-----~~rv~D~~el~~l-----------~~~----pk~lvVIGaGcIgcE~a~c~s~~Gc~- 1266 (1429)
..++.+|||+ .|..|+ ...+.++.+.... ... .++++|+|+|.++++++..+...|++
T Consensus 119 ~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~ 198 (352)
T PRK12770 119 YDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEK 198 (352)
T ss_pred CCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 4568899998 465542 2234444333211 011 37899999999999999888878887
Q ss_pred ccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEE-------------------EeCCCee
Q psy12805 1267 LGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMD-------------------EVPNSEK 1325 (1429)
Q Consensus 1267 V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v-------------------~~~gse~ 1325 (1429)
|..+.+.... .........+.|++++ +.++..+++++.. +++..+ ..+++++
T Consensus 199 Vtvi~~~~~~---~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (352)
T PRK12770 199 VYLAYRRTIN---EAPAGKYEIERLIARGVEFLELVTPVRIIGE----GRVEGVELAKMRLGEPDESGRPRPVPIPGSEF 271 (352)
T ss_pred EEEEeecchh---hCCCCHHHHHHHHHcCCEEeeccCceeeecC----CcEeEEEEEEEEecCcCcccCcCceecCCCeE
Confidence 6444332100 0111133345577777 4455666666431 221111 1234556
Q ss_pred EEEecEEEEeccccCchhhhhhc-cCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy12805 1326 IFKCDLVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1326 ~ieaDlVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L 1404 (1429)
+++||.||+++|++| +..+..+ +|++++++|+|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.++|
T Consensus 272 ~i~~D~vi~a~G~~p-~~~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 272 VLEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDE-KHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred EEECCEEEECcccCC-CchhhhcccCceecCCCcEeeCC-CcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 899999999999995 5566655 899999889999997 7899999999999999989999999999999999999998
Q ss_pred hC
Q psy12805 1405 MG 1406 (1429)
Q Consensus 1405 ~g 1406 (1429)
..
T Consensus 350 ~~ 351 (352)
T PRK12770 350 DL 351 (352)
T ss_pred hc
Confidence 64
No 97
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.53 E-value=6.2e-14 Score=181.02 Aligned_cols=188 Identities=16% Similarity=0.219 Sum_probs=136.6
Q ss_pred cccccce--EEEccCCCCCcCCcc-----Cc------cchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccc
Q psy12805 1205 IDKTRGF--IKYSRETAPYRPAEK-----RL------KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNII 1271 (1429)
Q Consensus 1205 ~~k~~gf--~kiAtGs~P~~p~~~-----rv------~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iL 1271 (1429)
.++...| +.+|||+.|..|+.. .+ .|.+.+.+.....++++|+|+|.+++|++..++..|.+|..+-
T Consensus 91 ~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~ 170 (785)
T TIGR02374 91 AGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIH 170 (785)
T ss_pred CCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEc
Confidence 3444444 889999999876321 11 2344455544567899999999999999999999999884221
Q ss_pred --cccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhh
Q psy12805 1272 --PKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIAN 1347 (1429)
Q Consensus 1272 --p~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle 1347 (1429)
|.+....+..+..+.+.+.++++| +.++..++++.. ++....+.+.++ +++++|+||+++|++ |+..|++
T Consensus 171 ~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~----~~~~~~v~~~dG-~~i~~D~Vi~a~G~~-Pn~~la~ 244 (785)
T TIGR02374 171 HAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG----ATKADRIRFKDG-SSLEADLIVMAAGIR-PNDELAV 244 (785)
T ss_pred cCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc----CCceEEEEECCC-CEEEcCEEEECCCCC-cCcHHHH
Confidence 221111233477888899999988 456777777743 222222333333 379999999999999 5667888
Q ss_pred ccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCC----CcHHHHHHHHHHHHHHHH
Q psy12805 1348 ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ----SLVVWAISEGRQAAREID 1401 (1429)
Q Consensus 1348 ~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~----~lvv~Ai~qGr~AA~nI~ 1401 (1429)
.+|++++ |.|.||+ +++||.|+|||+|||+..+ .++..|..||+.||.||.
T Consensus 245 ~~gl~~~--ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 245 SAGIKVN--RGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred hcCCccC--CCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhc
Confidence 8999886 5599997 8999999999999998632 367889999999999995
No 98
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.52 E-value=4.6e-14 Score=179.13 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=116.4
Q ss_pred CCceEEEccccccccHHHHHHhCCC-CccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEe---------
Q psy12805 1241 RKGLRIQAARCMECGVPFCQSSHGC-PLGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWT--------- 1308 (1429)
Q Consensus 1241 pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~--------- 1308 (1429)
.++++|+|+|.++++++....+.|. .|..+... +...+ ......+ +.++++| |.++..++++...
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~-~~~~~-~~~~~e~-~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~ 544 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR-DEANM-PGSKKEV-KNAREEGANFEFNVQPVALELNEQGHVCGIR 544 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec-CCCCC-CCCHHHH-HHHHHcCCeEEeccCcEEEEECCCCeEEEEE
Confidence 4789999999999999887777886 45322211 10000 0111222 3455666 3344444454321
Q ss_pred --------ecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCC---CCccCCCCEEEeC
Q psy12805 1309 --------KDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEK---TYLTTVPRVYAAG 1377 (1429)
Q Consensus 1309 --------k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~---~~~TSvPgVFAAG 1377 (1429)
.+.+|+.....++|+++++++|+||+|+|+.|++..+++.+|++++++|+|+||+. +++||+|+|||+|
T Consensus 545 ~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaG 624 (654)
T PRK12769 545 FLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGG 624 (654)
T ss_pred EEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 01223333333456677899999999999996655678889999999999999852 4899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1378 DCRRGQSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1378 D~a~g~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
||+.+++++++|+++|+.||.+|++||..
T Consensus 625 D~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 625 DAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999975
No 99
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.52 E-value=4.6e-14 Score=160.14 Aligned_cols=183 Identities=19% Similarity=0.143 Sum_probs=127.3
Q ss_pred ceEEEccCCCCCcCCccC--------ccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccc
Q psy12805 1210 GFIKYSRETAPYRPAEKR--------LKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHN 1281 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~r--------v~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~ 1281 (1429)
.++.+|+|+.|..|.... +.............++++|+|+|..+++++..++..+.+|..+.+.-..
T Consensus 102 d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~----- 176 (300)
T TIGR01292 102 KAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF----- 176 (300)
T ss_pred CEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc-----
Confidence 348899999887553211 1000000111224579999999999999998888888887433332111
Q ss_pred hHHHHHHHHHHhC-C--CCCCcEEEEEEEeecCCCceEEEE----eCCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1282 NWSEALNQLLQTN-N--FPAGIKTVKVEWTKDATGRWKMDE----VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1282 e~~~al~~~Le~~-G--~~~gv~v~~Ve~~k~~~G~~~~v~----~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
.....+.+.+++. | +..+..+.+++.. +....+. ..++++++++|+|++++|++| +..+++.+ ++++
T Consensus 177 ~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~----~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~-~~~~l~~~-~~~~ 250 (300)
T TIGR01292 177 RAEKILLDRLRKNPNIEFLWNSTVKEIVGD----NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP-NTELLKGL-LELD 250 (300)
T ss_pred CcCHHHHHHHHhCCCeEEEeccEEEEEEcc----CcEEEEEEEecCCCceEEEEccEEEEeeCCCC-ChHHHHHh-heec
Confidence 1123445555555 6 4456777777532 2221111 235567899999999999995 45677777 7888
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHHHHH
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~~~L 1404 (1429)
++|++.||+ +++|+.|+|||+|||+. .+.++..|+.||+.||.+|+++|
T Consensus 251 ~~g~i~v~~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 251 EGGYIVTDE-GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCcEEECC-CCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 889999997 79999999999999998 67889999999999999999875
No 100
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.51 E-value=2.5e-13 Score=160.16 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=134.1
Q ss_pred cceEEEccCCCCCcCCcc----C---ccchH---H----HHhhc---cCCCceEEEccccccccHHHHHHh----CC--C
Q psy12805 1209 RGFIKYSRETAPYRPAEK----R---LKDWD---E----IYATQ---HVRKGLRIQAARCMECGVPFCQSS----HG--C 1265 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~~~----r---v~D~~---e----l~~l~---~~pk~lvVIGaGcIgcE~a~c~s~----~G--c 1265 (1429)
+.++.+|||+.|..|... . +.+.+ + +.... ...++++|+|+|.+++|++.-+.. .| +
T Consensus 96 yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~ 175 (364)
T TIGR03169 96 YDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRG 175 (364)
T ss_pred ccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCc
Confidence 445889999998766321 1 12222 2 33221 134689999999999999988763 34 3
Q ss_pred Cccccccccchh--hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCc
Q psy12805 1266 PLGNIIPKWNDL--IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGP 1341 (1429)
Q Consensus 1266 ~V~~iLp~~d~l--vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp 1341 (1429)
+|..+ .. ..+ .+..++.+.+.+.|++.| +..+.++++++. +. +.+.+ .+++++|.|++++|.+|+
T Consensus 176 ~V~li-~~-~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-----~~---v~~~~-g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 176 QVTLI-AG-ASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-----GA---LILAD-GRTLPADAILWATGARAP 244 (364)
T ss_pred eEEEE-eC-CcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC-----Ce---EEeCC-CCEEecCEEEEccCCChh
Confidence 45222 11 111 133478888999999988 445666666621 22 22222 347999999999999954
Q ss_pred hhhhhhccCccccCCCCEEecCCCCcc-CCCCEEEeCCCCCC-----CCcHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy12805 1342 ERYIANELDLTLDPRSNYSTVEKTYLT-TVPRVYAAGDCRRG-----QSLVVWAISEGRQAAREIDSFLMGTSTLPDV 1413 (1429)
Q Consensus 1342 ~~~Lle~lGLeld~~G~I~VD~~~~~T-SvPgVFAAGD~a~g-----~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p~~ 1413 (1429)
.++...+++++++|+|.||+ +++| +.|+|||+|||+.. +....+|+.||+.+|+||.+.+.+++..+..
T Consensus 245 --~~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~ 319 (364)
T TIGR03169 245 --PWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPLRPFR 319 (364)
T ss_pred --hHHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence 35667789998889999997 7887 99999999999853 3567899999999999999999998765553
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.50 E-value=5.9e-14 Score=173.51 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=129.5
Q ss_pred ceEEEccCCCCCcCCccCc--------cchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccc
Q psy12805 1210 GFIKYSRETAPYRPAEKRL--------KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHN 1281 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~rv--------~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~ 1281 (1429)
.++.+|||+.|..|..... ............+++++|+|+|++++|++..++.+|.+|..+-. .+.+
T Consensus 313 d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~-~~~l---- 387 (515)
T TIGR03140 313 KSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEF-ADEL---- 387 (515)
T ss_pred CEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEe-CCcC----
Confidence 3588999998866532111 00000001112468999999999999999999888887743321 1221
Q ss_pred hHHHHHHHHHHh-CC--CCCCcEEEEEEEeecCCCceEEEEe----CCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1282 NWSEALNQLLQT-NN--FPAGIKTVKVEWTKDATGRWKMDEV----PNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1282 e~~~al~~~Le~-~G--~~~gv~v~~Ve~~k~~~G~~~~v~~----~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
.....+.+.+++ +| +..+..+.+++. +++.+..+.. +++.++++||.||+++|++ |+..+++.. ++++
T Consensus 388 ~~~~~l~~~l~~~~gV~i~~~~~v~~i~~---~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~-Pn~~~l~~~-~~~~ 462 (515)
T TIGR03140 388 KADKVLQDKLKSLPNVDILTSAQTTEIVG---DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV-PNTEWLKDA-VELN 462 (515)
T ss_pred ChhHHHHHHHhcCCCCEEEECCeeEEEEc---CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc-CCchHHhhh-cccC
Confidence 123345556655 46 445666667743 2233322221 2445689999999999999 566677766 8888
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCC-CcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~-~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
++|+|.||+ +++||+|+|||+|||+..+ .++..|+.+|+.||.+|..||+.
T Consensus 463 ~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 463 RRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 899999997 8999999999999999854 57889999999999999999864
No 102
>KOG1336|consensus
Probab=99.50 E-value=1.1e-13 Score=163.84 Aligned_cols=204 Identities=18% Similarity=0.225 Sum_probs=155.3
Q ss_pred ccCccceecccccccce--EEEccCCCCCcCCc-----c------CccchHHHHhhccCCCceEEEccccccccHHHHHH
Q psy12805 1195 GADKKKVDRSIDKTRGF--IKYSRETAPYRPAE-----K------RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQS 1261 (1429)
Q Consensus 1195 ~~~~k~~~~~~~k~~gf--~kiAtGs~P~~p~~-----~------rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s 1261 (1429)
+...|+++.-.+++..| +++|||+.|.+++. + .+.|.+.+.........++|+|+|+|++|++..+.
T Consensus 154 D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~ 233 (478)
T KOG1336|consen 154 DLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALV 233 (478)
T ss_pred eccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHH
Confidence 44556677777777666 88999998877632 2 23455555555555678999999999999999998
Q ss_pred hCCCCcccccccc--chhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEecc
Q psy12805 1262 SHGCPLGNIIPKW--NDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG 1337 (1429)
Q Consensus 1262 ~~Gc~V~~iLp~~--d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG 1337 (1429)
..+.+|..+-|.. .+++|...+.+.++.++++++ |.+++.+...+. .++|++..+.+.+ .++++||+|++.+|
T Consensus 234 ~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~d-g~~l~adlvv~GiG 310 (478)
T KOG1336|consen 234 SKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKD-GKTLEADLVVVGIG 310 (478)
T ss_pred hcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEecc-CCEeccCeEEEeec
Confidence 7788886666654 334788899999999999999 556777777754 3457665555444 34899999999999
Q ss_pred ccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCC----------CcHHHHHHHHHHHHHHHHHHH
Q psy12805 1338 FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ----------SLVVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1338 ~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~----------~lvv~Ai~qGr~AA~nI~~~L 1404 (1429)
.+ |++.+++. |..++++|+|.||+ .++|++|+|||+|||++.+ .-+..|..+|++|...|...-
T Consensus 311 ~~-p~t~~~~~-g~~~~~~G~i~V~~-~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~ 384 (478)
T KOG1336|consen 311 IK-PNTSFLEK-GILLDSKGGIKVDE-FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAP 384 (478)
T ss_pred cc-cccccccc-cceecccCCEeehh-ceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccC
Confidence 99 66777777 88899999999997 9999999999999998743 335568888888777665443
No 103
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=99.48 E-value=5e-14 Score=156.12 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=108.4
Q ss_pred EEEeCCccchhhhccc-CCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCCc
Q psy12805 801 LKLTGSAGQSFCAFLV-RGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDK 879 (1429)
Q Consensus 801 i~~~g~aG~s~Ga~~~-~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~~ 879 (1429)
+.+.+..||.+....+ ...+ |+|+|++++++|..|+||+|+|.
T Consensus 28 ~~i~n~~g~~~ig~gl~~~~~-------------------------I~v~G~aG~~~G~~m~gg~I~v~----------- 71 (232)
T cd00981 28 IVLDNVLGQRYIGDGLPGNVR-------------------------INIYGVPGNDLGAFMSGPTIIVY----------- 71 (232)
T ss_pred EEEECCCCceecccCCCCCEE-------------------------EEEEecCcHHHHhhcCCCEEEEE-----------
Confidence 6677888887755534 3444 89999999999999999999997
Q ss_pred cceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCcccccccc-----CceEEEeCCCCCcccccccccEEE
Q psy12805 880 NVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMT-----GGCAVILGLTGRNFAAGMSGGIAY 953 (1429)
Q Consensus 880 n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~-----gG~ivvlG~~g~~~g~gM~gG~~y 953 (1429)
+.+|+.+..+|+||+|+|+|+||..+|.-|+||+++|+| +|+++|.+|. ||+|||.|++|..+|.-|.||+|+
T Consensus 72 -Gna~d~~G~~m~GG~I~V~G~aG~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~iv 150 (232)
T cd00981 72 -GNAQDDVGNTMNDGKIVIHGSAGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVII 150 (232)
T ss_pred -ecchhhhhccccCcEEEEECChHHHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEEE
Confidence 667777888999999999999999999999999999999 9999999999 999999999999999999999999
Q ss_pred EecC
Q psy12805 954 VLDV 957 (1429)
Q Consensus 954 v~~~ 957 (1429)
|+..
T Consensus 151 V~G~ 154 (232)
T cd00981 151 VLGL 154 (232)
T ss_pred EECC
Confidence 9986
No 104
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.47 E-value=5.8e-13 Score=172.42 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=129.7
Q ss_pred cceEEEccCCCCCcC---C--ccCccchHHHHhh-------ccCCCceEEEccccccccHHHHHHhC-C-CCcccccccc
Q psy12805 1209 RGFIKYSRETAPYRP---A--EKRLKDWDEIYAT-------QHVRKGLRIQAARCMECGVPFCQSSH-G-CPLGNIIPKW 1274 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p---~--~~rv~D~~el~~l-------~~~pk~lvVIGaGcIgcE~a~c~s~~-G-c~V~~iLp~~ 1274 (1429)
+.++.+|||+.+.++ + ...+.+..+++.. ...+++++|||+|.++++++....+. | .+|..+.+.-
T Consensus 624 YDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 624 YDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 456889999875432 1 2234433333322 23568999999999999999877766 4 2563332211
Q ss_pred chhhccchHHHHHHHHHHhCC--CCCCcEEEEEEE------------eecCCCceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1275 NDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEW------------TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1275 d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~------------~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
... -..+.+.+.+.++ .| |.....+.+++. ..+.+|+...+. .+++++++||.||+|+|+.
T Consensus 704 ~~~--MPA~~eEle~Ale-eGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~-tg~~~~I~aD~VIvAIG~~- 778 (1019)
T PRK09853 704 KQE--MPAWREEYEEALE-DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVE-TGETVTLEADTVITAIGEQ- 778 (1019)
T ss_pred ccc--ccccHHHHHHHHH-cCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEee-CCCeEEEEeCEEEECCCCc-
Confidence 000 0012233344443 45 333444444431 012234333222 4566789999999999999
Q ss_pred chhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1341 PERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1341 p~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+..+++..|++++++|++.||+ +++|+.|+|||+|||+.++.+++.|+.+|+.||.+|+..+..
T Consensus 779 Pntelle~~GL~ld~~G~I~VDe-tlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 779 VDTELLKANGIPLDKKGWPVVDA-NGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred CChhHHHhcCccccCCCCEEeCC-CcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCC
Confidence 55678888999999999999986 899999999999999999999999999999999999988763
No 105
>cd00504 GXGXG GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met
Probab=99.47 E-value=4.6e-14 Score=147.28 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=93.9
Q ss_pred EEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCCCC
Q psy12805 799 INLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESD 878 (1429)
Q Consensus 799 i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~~~ 878 (1429)
-+|.++|+++..+|+.|. |-+|+|+||+++++ |++.+..+.+|.||+|+|+
T Consensus 41 g~I~v~G~agd~~G~~m~-GG~I~V~g~~~~~~------------------G~ag~~~~~gm~gG~i~V~---------- 91 (149)
T cd00504 41 GTITVEGNANDYVGKGMS-GGEIVIHPPAGDEN------------------GIAGNVALYGATGGKIFVR---------- 91 (149)
T ss_pred CEEEEEEcCchhhhcccc-CCEEEEecCCcccc------------------eeehHhhhhhccCCEEEEE----------
Confidence 467899999999999944 66889998888666 7888888888888888887
Q ss_pred ccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeC
Q psy12805 879 KNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILG 937 (1429)
Q Consensus 879 ~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG 937 (1429)
+.+|+-+...|++|+++|.|+++.++|.+|.+++++|.| +|+++|++|++|+|+|.|
T Consensus 92 --G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~ivV~G~~g~~~g~~M~gG~i~v~g 149 (149)
T cd00504 92 --GNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIYVRG 149 (149)
T ss_pred --ecchhhhhhhccCcEEEEEeecCccccccccCCEEEEeCCCCcCccccCcceEEEEeC
Confidence 566777777888888888899999999999999999999 999999999999999976
No 106
>PRK13984 putative oxidoreductase; Provisional
Probab=99.47 E-value=3.9e-13 Score=169.26 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=120.0
Q ss_pred cceEEEccCCCC-CcC-----CccCccchHHHHhh-----------ccCCCceEEEccccccccHHHHHHhCCC------
Q psy12805 1209 RGFIKYSRETAP-YRP-----AEKRLKDWDEIYAT-----------QHVRKGLRIQAARCMECGVPFCQSSHGC------ 1265 (1429)
Q Consensus 1209 ~gf~kiAtGs~P-~~p-----~~~rv~D~~el~~l-----------~~~pk~lvVIGaGcIgcE~a~c~s~~Gc------ 1265 (1429)
+.++.+|||+.+ ..+ ....+.+..+.+.. ...+++++|+|||.++++++..+.++++
T Consensus 369 yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~ 448 (604)
T PRK13984 369 HDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEV 448 (604)
T ss_pred CCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCce
Confidence 456889999864 332 12223333333221 1236899999999999999999887754
Q ss_pred Cccccccc-cchhhccchHHHHHHHHHHhCCC--CCCcEEEEEEE---------------eecCCCceEEEEeCCCeeEE
Q psy12805 1266 PLGNIIPK-WNDLIYHNNWSEALNQLLQTNNF--PAGIKTVKVEW---------------TKDATGRWKMDEVPNSEKIF 1327 (1429)
Q Consensus 1266 ~V~~iLp~-~d~lvf~~e~~~al~~~Le~~G~--~~gv~v~~Ve~---------------~k~~~G~~~~v~~~gse~~i 1327 (1429)
+|..+... ... .+.... ..+.+.+ +.|+ ..+..++++.. ..+.+|++.....+++++++
T Consensus 449 ~V~v~~~~r~~~-~~~~~~-~e~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i 525 (604)
T PRK13984 449 NVKVTSLERTFE-EMPADM-EEIEEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIV 525 (604)
T ss_pred EEEEeccccCcc-cCCCCH-HHHHHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEE
Confidence 33322111 100 011122 2233333 3453 33333333321 11123333233334566789
Q ss_pred EecEEEEeccccCchhhhhhcc--CccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1328 KCDLVLLAMGFLGPERYIANEL--DLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1328 eaDlVLlAiG~~pp~~~Lle~l--GLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
++|+||+|+|++|+...|...+ +++++ +|+|.||+ +++||+|+|||+|||+.+++ +++|+++|+.||.+|++||+
T Consensus 526 ~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~-~G~i~vd~-~~~Ts~~gVfAaGD~~~~~~-~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 526 EADMVVEAIGQAPDYSYLPEELKSKLEFV-RGRILTNE-YGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred ECCEEEEeeCCCCChhhhhhhhccCcccc-CCeEEeCC-CCccCCCCEEEecCcCCchH-HHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995544333333 46554 68899997 89999999999999998775 58899999999999999997
Q ss_pred CC
Q psy12805 1406 GT 1407 (1429)
Q Consensus 1406 g~ 1407 (1429)
++
T Consensus 603 ~~ 604 (604)
T PRK13984 603 KQ 604 (604)
T ss_pred cC
Confidence 64
No 107
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.46 E-value=1.4e-12 Score=152.63 Aligned_cols=169 Identities=22% Similarity=0.237 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.+.|+.+|+..|++||++. .+.....|..+.++|||+|++.+..|..+..+ ....+|.|...++.++.+.+.
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G---~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~--~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAG---NVVTAEAARDLIDAGADGVKVGIGPGSICTTR--IVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEEC---CCCCHHHHHHHHhcCCCEEEECCCCCcCcccc--eeCCCCCCHHHHHHHHHHHHh
Confidence 5678899999998777888874 44455667889999999999965443322221 234678999999999988775
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC-------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG------- 660 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g------- 660 (1429)
.. .++||++|||+++.|++||+++||++|.+||.+.-+ .+||..+...|....+.|-+
T Consensus 195 ~~----~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t-----------~Es~g~~~~~~g~~~~~~~g~~s~~~~ 259 (325)
T cd00381 195 DY----GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT-----------DESPGEYIEINGKRYKEYRGMGSLGAM 259 (325)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc-----------ccCCCcEEEECCeeeeeEecccchhhh
Confidence 43 489999999999999999999999999999966653 35665555444322221110
Q ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCc
Q psy12805 661 --------------------------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTD 696 (1429)
Q Consensus 661 --------------------------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsd 696 (1429)
.+-.+.+.+..+..+||.-|..+|.++|.|+..+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 260 KKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred hcCccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 012488899999999999999999999999855443
No 108
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.44 E-value=1.2e-12 Score=170.18 Aligned_cols=194 Identities=19% Similarity=0.166 Sum_probs=129.6
Q ss_pred cceEEEccCCCCCcC-----CccCccchHHHHhh-------ccCCCceEEEccccccccHHHHHHhC-CC-Ccccccccc
Q psy12805 1209 RGFIKYSRETAPYRP-----AEKRLKDWDEIYAT-------QHVRKGLRIQAARCMECGVPFCQSSH-GC-PLGNIIPKW 1274 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p-----~~~rv~D~~el~~l-------~~~pk~lvVIGaGcIgcE~a~c~s~~-Gc-~V~~iLp~~ 1274 (1429)
+.++.+|||+.+.++ ....+.+..+++.. ...+++++|+|+|.++++++....+. |. +|..+.+..
T Consensus 622 YDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 622 YKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred ccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 346889999876443 11234444333321 23579999999999999999877665 75 453332211
Q ss_pred chhhccchHHHHHHHHHHhCC--CCCCcEEEEEE----------E-eecCCCceEEEEeCCCeeEEEecEEEEeccccCc
Q psy12805 1275 NDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVE----------W-TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGP 1341 (1429)
Q Consensus 1275 d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve----------~-~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp 1341 (1429)
... .....+.+.+.++ +| |..+..+.+++ . ..+.+|+...+ .+|++.+++||+||+|+|+. |
T Consensus 702 ~~~--Mpa~~eEl~~ale-eGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v-~~Gee~~I~aD~VIvAiG~~-P 776 (1012)
T TIGR03315 702 KRY--MPASREELEEALE-DGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV-GTGETVDLPADTVIAAVGEQ-V 776 (1012)
T ss_pred ccc--cccCHHHHHHHHH-cCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeee-cCCCeEEEEeCEEEEecCCc-C
Confidence 000 0012223333333 45 33333333332 0 11233443222 24666789999999999999 5
Q ss_pred hhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1342 ERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1342 ~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
+..+++.+|++++++|++.||+..++|+.|+|||+|||+.++.+++.|+.+|+.||.+|.+.....
T Consensus 777 nt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~~ 842 (1012)
T TIGR03315 777 DTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGLN 842 (1012)
T ss_pred ChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccCC
Confidence 567888899999999999999755899999999999999999999999999999999998665443
No 109
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.44 E-value=4.6e-13 Score=165.74 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=130.8
Q ss_pred ceEEEccCCCCCcCCccCccc--------hHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccc
Q psy12805 1210 GFIKYSRETAPYRPAEKRLKD--------WDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHN 1281 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~rv~D--------~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~ 1281 (1429)
..+.+|||+.|..+......+ ...........++++|+|+|.+++|++.-++..+.+|..+-+. +.+
T Consensus 312 ~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~-~~l---- 386 (517)
T PRK15317 312 KTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA-PEL---- 386 (517)
T ss_pred CEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC-ccc----
Confidence 347899998876653211100 0000011124579999999999999999998888877533222 111
Q ss_pred hHHHHHHHHHHh-CC--CCCCcEEEEEEEeecCCCceEEEE----eCCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1282 NWSEALNQLLQT-NN--FPAGIKTVKVEWTKDATGRWKMDE----VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1282 e~~~al~~~Le~-~G--~~~gv~v~~Ve~~k~~~G~~~~v~----~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
...+.+.+.+.+ .| +..+..+..++. .++++..+. .+++.++++||.|++++|++ |+..+++.. ++++
T Consensus 387 ~~~~~l~~~l~~~~gI~i~~~~~v~~i~~---~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~-p~~~~l~~~-v~~~ 461 (517)
T PRK15317 387 KADQVLQDKLRSLPNVTIITNAQTTEVTG---DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV-PNTEWLKGT-VELN 461 (517)
T ss_pred cccHHHHHHHhcCCCcEEEECcEEEEEEc---CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc-cCchHHhhh-eeeC
Confidence 112344555554 45 555777777753 234433222 13445689999999999999 556677766 8888
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCC-CcHHHHHHHHHHHHHHHHHHHhCCC
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREIDSFLMGTS 1408 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~-~lvv~Ai~qGr~AA~nI~~~L~g~~ 1408 (1429)
++|+|.||+ +++||+|+|||||||+..+ .+++.|+.+|..||.++..+|+...
T Consensus 462 ~~g~i~vd~-~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 462 RRGEIIVDA-RGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred CCCcEEECc-CCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 899999997 8999999999999998854 7899999999999999999998653
No 110
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.43 E-value=1.4e-12 Score=159.64 Aligned_cols=161 Identities=26% Similarity=0.321 Sum_probs=114.0
Q ss_pred CCceEEEccccccccHHHHHHhCCC-Ccccccccc-chhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEee-------
Q psy12805 1241 RKGLRIQAARCMECGVPFCQSSHGC-PLGNIIPKW-NDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTK------- 1309 (1429)
Q Consensus 1241 pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~iLp~~-d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k------- 1309 (1429)
.++++|+|+|.++++.+.....+|+ +|..+...- ..+ . .....+. .+++.| |..+..++++...+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~--~-~~~~e~~-~~~~~GV~~~~~~~~~~i~~~~~g~v~~v 357 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANM--P-GSRREVA-NAREEGVEFLFNVQPVYIECDEDGRVTGV 357 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccC--C-CCHHHHH-HHHhcCCEEEecCCcEEEEECCCCeEEEE
Confidence 4899999999999998888778886 464332211 000 0 1112222 344566 34455555553210
Q ss_pred ----------cCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecC---CCCccCCCCEEEe
Q psy12805 1310 ----------DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVE---KTYLTTVPRVYAA 1376 (1429)
Q Consensus 1310 ----------~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~---~~~~TSvPgVFAA 1376 (1429)
+.+|+......++++++++||.||+|+|++|+...+++.++++++++|+|.||+ .+++|+.|+|||+
T Consensus 358 ~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~ 437 (467)
T TIGR01318 358 GLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAG 437 (467)
T ss_pred EEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEE
Confidence 112222222234566789999999999999655567888899999999999983 3689999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1377 GDCRRGQSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1377 GD~a~g~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|||+.++.++++|+.+|+.||.+|++||.
T Consensus 438 GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 438 GDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999984
No 111
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.43 E-value=7.7e-13 Score=167.61 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=116.2
Q ss_pred CCCceEEEccccccccHHHHHHhCCC-CccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEe--------
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGC-PLGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWT-------- 1308 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~-------- 1308 (1429)
..++++|+|+|.++++.+....++|. +|..+.+.- .... ......+.. ++++| |.++..++++...
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~-~~~~-~~~~~e~~~-a~~eGv~~~~~~~~~~i~~~~~g~v~~v 526 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD-EVSM-PGSRKEVVN-AREEGVEFQFNVQPQYIACDEDGRLTAV 526 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC-cccC-CCCHHHHHH-HHHcCCeEEeccCCEEEEECCCCeEEEE
Confidence 35789999999999998877667785 453322210 0000 011122222 34556 3334434444221
Q ss_pred ---------ecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCC---CCccCCCCEEEe
Q psy12805 1309 ---------KDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEK---TYLTTVPRVYAA 1376 (1429)
Q Consensus 1309 ---------k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~---~~~TSvPgVFAA 1376 (1429)
.+++|+......++++++++||+||+|+|+.|++..+++.+|++++++|+|.||+. +++||+|+|||+
T Consensus 527 ~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~ 606 (639)
T PRK12809 527 GLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAG 606 (639)
T ss_pred EEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEc
Confidence 12234434444467778999999999999996656678889999999999999752 489999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1377 GDCRRGQSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1377 GD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|||+.+++++++|+++|+.||.+|+.||.+.
T Consensus 607 GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 607 GDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999764
No 112
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.42 E-value=7.2e-13 Score=165.38 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=127.9
Q ss_pred eEEEccCCCCCcCCccCcc--chHHHH------hhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccch
Q psy12805 1211 FIKYSRETAPYRPAEKRLK--DWDEIY------ATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNN 1282 (1429)
Q Consensus 1211 f~kiAtGs~P~~p~~~rv~--D~~el~------~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e 1282 (1429)
++.+|||+.|..|+..... +.+.+. .....+++++|+|+|.+++|++..++..|++|..+.+. +.+...
T Consensus 105 ~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~-~~~~~~-- 181 (555)
T TIGR03143 105 AVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE-PDFTCA-- 181 (555)
T ss_pred EEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeC-CccccC--
Confidence 4789999999877432211 011110 11224689999999999999999998889988544332 111111
Q ss_pred HHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEE---E-eCCCeeEE--EecE----EEEeccccCchhhhhhccC
Q psy12805 1283 WSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMD---E-VPNSEKIF--KCDL----VLLAMGFLGPERYIANELD 1350 (1429)
Q Consensus 1283 ~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v---~-~~gse~~i--eaDl----VLlAiG~~pp~~~Lle~lG 1350 (1429)
.....++++.+| +..+..++++.. ++.+..+ . .+|+..++ +||. |++++|++ |+..|++. +
T Consensus 182 -~~~~~~~~~~~gV~i~~~~~V~~i~~----~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~-Pn~~l~~~-~ 254 (555)
T TIGR03143 182 -KLIAEKVKNHPKIEVKFNTELKEATG----DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA-PSSELFKG-V 254 (555)
T ss_pred -HHHHHHHHhCCCcEEEeCCEEEEEEc----CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCC-CChhHHhh-h
Confidence 222333444456 455777777743 2222221 1 13444343 4776 99999999 55667665 6
Q ss_pred ccccCCCCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy12805 1351 LTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREIDSFLMGTST 1409 (1429)
Q Consensus 1351 Leld~~G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~~~L~g~~~ 1409 (1429)
++++++|+|.||+ +++||+|+|||+|||+. .+..+..|+.||+.||.+|.+||.+...
T Consensus 255 l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 255 VELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred cccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhhh
Confidence 8889899999997 89999999999999975 3567889999999999999999977544
No 113
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.41 E-value=4.9e-13 Score=151.95 Aligned_cols=168 Identities=24% Similarity=0.308 Sum_probs=108.3
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHH-hCCCCeEEEEeccc---cChH-------HHHHHHHhcCCcEEEEecCCCC
Q psy12805 491 PGVGLISPPPHHDIYSIEDLAELIYDLKC-ANPNARISVKLVSE---VGVG-------VVASGVAKGKAEHIVISGHDGG 559 (1429)
Q Consensus 491 pg~~LisP~~h~di~siedL~qlI~~Lk~-~~~~~pV~VKLv~e---~Gvg-------~vA~~~akaGaD~I~IsG~~GG 559 (1429)
....|-|| |-+.+++.++ ..+.. .+....+......+ .++. ..|..+++.|+.+|+||++..+
T Consensus 94 ~~l~l~sP-----iL~~~~l~~l-~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~ 167 (287)
T PF04898_consen 94 RRLELDSP-----ILSNGQLEKL-RSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILILSDRNAS 167 (287)
T ss_dssp -CEEESSS-----B--HHHHHHH-HHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-C
T ss_pred eEEEecCC-----EECHHHHHHH-HHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEECCCCCC
Confidence 34566677 7888887763 33322 22222233333322 1222 2456678889999999999744
Q ss_pred CCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEE-EcCCcccHHHHHHHHHhcchhhhcchhHHHHhcccccccc
Q psy12805 560 TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQ-ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKC 638 (1429)
Q Consensus 560 Tgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Li-asGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c 638 (1429)
.+++.||.+++++.+|++|++.|+|.+++|| -||.+|+.+|++..+.+||++| +||+++..+. ..+
T Consensus 168 --------~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV----~PYla~e~~~-~~~ 234 (287)
T PF04898_consen 168 --------PDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAV----NPYLAYETIR-ELA 234 (287)
T ss_dssp --------TTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEE----EEHCCHHHHH-HCC
T ss_pred --------cCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhh----cHHHHHHHHH-HHH
Confidence 5688899999999999999999999999998 6799999999999999999998 6888775221 011
Q ss_pred ccCCCCccceecCHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 639 HLNTCPVGIATQDPELRKKFA-GKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 639 ~~~~cP~giatqd~~lr~~~~-g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
..+..+ . ...+.+.||.+++.++|.|+|++|||++++.=
T Consensus 235 ~~~~~~--------------~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY 274 (287)
T PF04898_consen 235 ERGELP--------------ELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSY 274 (287)
T ss_dssp CCCCCC--------------T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHH
T ss_pred hcCCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhc
Confidence 111111 1 12478899999999999999999999999953
No 114
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.40 E-value=8.5e-13 Score=162.18 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=152.7
Q ss_pred cccCccceecccccccce--EEEccCCCCCcCCcc-----C---ccchH---HHHhhccCCCceEEEccccccccHHHHH
Q psy12805 1194 MGADKKKVDRSIDKTRGF--IKYSRETAPYRPAEK-----R---LKDWD---EIYATQHVRKGLRIQAARCMECGVPFCQ 1260 (1429)
Q Consensus 1194 i~~~~k~~~~~~~k~~gf--~kiAtGs~P~~p~~~-----r---v~D~~---el~~l~~~pk~lvVIGaGcIgcE~a~c~ 1260 (1429)
|+.+.|.++...+....| +.+||||.|++++.. . +.|.+ .+.+.....++.+|||+|-.|+|.|..+
T Consensus 85 idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L 164 (793)
T COG1251 85 IDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGL 164 (793)
T ss_pred eccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHH
Confidence 455667777777777788 559999999987421 1 23344 4444455667899999999999999999
Q ss_pred HhCCCCc--cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEec
Q psy12805 1261 SSHGCPL--GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAM 1336 (1429)
Q Consensus 1261 s~~Gc~V--~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAi 1336 (1429)
.+.|.++ ..++|....+-..+.-...+++.+++.| |.++..+..+.. ++++..+.+.+.. .+++|+|++|+
T Consensus 165 ~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g----~~~~~~vr~~DG~-~i~ad~VV~a~ 239 (793)
T COG1251 165 KDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG----EDKVEGVRFADGT-EIPADLVVMAV 239 (793)
T ss_pred HhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc----CcceeeEeecCCC-cccceeEEEec
Confidence 9999988 4445544433344567788888999988 455665555533 3344444444433 69999999999
Q ss_pred cccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCC----CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1337 GFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG----QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1337 G~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g----~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|++ |+..|+..+|+++++ | |.||+ +|+||+|+|||+|+|+.. +.++..+..|++++|.++..-..+
T Consensus 240 GIr-Pn~ela~~aGlavnr-G-Ivvnd-~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 240 GIR-PNDELAKEAGLAVNR-G-IVVND-YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred ccc-cccHhHHhcCcCcCC-C-eeecc-cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc
Confidence 999 778999999999996 5 89997 999999999999999863 578888999999999988655443
No 115
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.39 E-value=5.6e-12 Score=149.95 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCC-CccccccccccCCChHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGT-GASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGT-gaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
+.+.++|+++|+.+|+.+|+++-+ .....|..+.++|||+|.+ |.+.|+ +... ....+|.|.+.++.++.+.+
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr--~~~g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLISVGADCLKV-GIGPGSICTTR--IVAGVGVPQITAICDVYEVC 252 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHHcCCCEEEE-CCCCCcCCcce--eecCCCCChHHHHHHHHHHH
Confidence 557788999999999999999944 3455678899999999997 543332 2221 23456889999998888876
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC--c---
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG--K--- 661 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g--~--- 661 (1429)
... .++||++|||+++.|++||+++||++|.+|+.+.- +.+||..+...+....|.|.| .
T Consensus 253 ~~~----~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag-----------t~Espg~~~~~~g~~~K~yrGmgS~~A 317 (404)
T PRK06843 253 KNT----NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG-----------TKESPSEEIIYNGKKFKSYVGMGSISA 317 (404)
T ss_pred hhc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee-----------eecCCCcEEEECCEEEEEEeccchHHH
Confidence 443 48999999999999999999999999999984332 457888877666443333311 0
Q ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcccccc
Q psy12805 662 -------------------------------PEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701 (1429)
Q Consensus 662 -------------------------------~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~ 701 (1429)
.-.|.+++..+..+||.-|..+|.++|.||..++.++...
T Consensus 318 m~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t 388 (404)
T PRK06843 318 MKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKIS 388 (404)
T ss_pred HhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEc
Confidence 0127888999999999999999999999997777666553
No 116
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.39 E-value=1.4e-13 Score=164.69 Aligned_cols=91 Identities=49% Similarity=0.707 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCCCCCe--EEEecchhccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHhhhCCCCceeEEEeeeccccc
Q psy12805 999 IAKNLLQTWPAPAKQF--VKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV 1076 (1429)
Q Consensus 999 ~a~~~l~~~~~~~~~f--~kV~p~ia~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 1076 (1429)
++|+ +||+.++++ .||+++||.+||.++|+++||||+|||+||++||+++|+.||+.++++||+||+++...+..
T Consensus 153 ~~QG---Akpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~ 229 (392)
T cd02808 153 IGQG---AKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGD 229 (392)
T ss_pred eccC---CCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHH
Confidence 8899 999999998 89999999999999999999999999999999999999999999999999999999877778
Q ss_pred eeccccceecceEecC
Q psy12805 1077 VASGVAKSIVSFEILP 1092 (1429)
Q Consensus 1077 ~a~g~ak~~~~~~~~~ 1092 (1429)
+|....+..+|+...+
T Consensus 230 ~a~~~~~~g~D~I~Vs 245 (392)
T cd02808 230 IAAGVAAAGADFITID 245 (392)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 8877766656665544
No 117
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=6.3e-12 Score=148.83 Aligned_cols=175 Identities=23% Similarity=0.311 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+++++.++++.+ ++||+++ .+.....|..+.++|||.|.+ |.++|++- .-.....+|+|.+.++.++.+.
T Consensus 175 ~~~~i~~~ik~~-----~ipVIaG---~V~t~e~A~~l~~aGAD~V~V-G~G~Gs~~-~t~~~~g~g~p~~~ai~~~~~a 244 (368)
T PRK08649 175 EPLNLKEFIYEL-----DVPVIVG---GCVTYTTALHLMRTGAAGVLV-GIGPGAAC-TSRGVLGIGVPMATAIADVAAA 244 (368)
T ss_pred CHHHHHHHHHHC-----CCCEEEe---CCCCHHHHHHHHHcCCCEEEE-CCCCCcCC-CCcccCCCCcCHHHHHHHHHHH
Confidence 456655555542 6899885 333455677788899999987 55444221 1112345689999999888754
Q ss_pred H----HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC--
Q psy12805 586 L----ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA-- 659 (1429)
Q Consensus 586 L----~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~-- 659 (1429)
. .+.+.+ .++||++|||+++.|++||+++|||+|.+|+.+.-+..|- -..|..|..+.++.+-+-..
T Consensus 245 ~~~~l~~~~~~-~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Esp------g~~~~~gm~s~~~~~~eg~~~~ 317 (368)
T PRK08649 245 RRDYLDETGGR-YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAP------GRGWHWGMAAPHPSLPRGTRIK 317 (368)
T ss_pred HHHhhhhhcCC-CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCC------CcccccCcccCCCcCCCceEEe
Confidence 3 333333 5999999999999999999999999999999777655432 11244444444322111000
Q ss_pred -CcHHHHHHHHH----------HHHHHHHHHHHhcCCCChhhhcCCCccc
Q psy12805 660 -GKPEHVINYLF----------MLAEEVRTHMAKLGIRKFADLVGRTDLL 698 (1429)
Q Consensus 660 -g~~e~v~ny~~----------~l~~eLr~iMa~mGi~sl~ElvGrsdll 698 (1429)
...-.|.+.+. .+..+||.-|..+|.++|.|+ -+.+++
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~-~~~~~~ 366 (368)
T PRK08649 318 VGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEF-QKVEVV 366 (368)
T ss_pred CCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHH-hhcCeE
Confidence 00123555555 889999999999999999998 344443
No 118
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.6e-12 Score=149.06 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=135.5
Q ss_pred eEEEccCCCCCcCCcc---Cc--------cchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhc
Q psy12805 1211 FIKYSRETAPYRPAEK---RL--------KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIY 1279 (1429)
Q Consensus 1211 f~kiAtGs~P~~p~~~---rv--------~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf 1279 (1429)
++.||||..++.|... .. .+++. ....++++|+|+|..+++-+..++..+.+|..+.++-.-
T Consensus 106 ~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~--- 178 (305)
T COG0492 106 AVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF--- 178 (305)
T ss_pred EEEECcCCcccCCCCCcchhhcCCceEEeeecCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc---
Confidence 4889999988877321 11 12222 234568999999999999999999999998766655433
Q ss_pred cchHHHHHHHHHHhC-C--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCC
Q psy12805 1280 HNNWSEALNQLLQTN-N--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPR 1356 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~-G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~ 1356 (1429)
.-.+.+.+.++++ + +..+..+.++.... -+ .+......++.+.+++|.|++++|.. |+..|++..++ ++++
T Consensus 179 --ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~-~v~l~~~~~~~~~~~~~gvf~~iG~~-p~~~~~~~~~~-~~~~ 252 (305)
T COG0492 179 --RAEEILVERLKKNVKIEVLTNTVVKEILGDD-VE-GVVLKNVKGEEKELPVDGVFIAIGHL-PNTELLKGLGV-LDEN 252 (305)
T ss_pred --CcCHHHHHHHHhcCCeEEEeCCceeEEecCc-cc-eEEEEecCCceEEEEeceEEEecCCC-CchHHHhhccc-cCCC
Confidence 1234455555554 3 55677777775421 01 12222222667799999999999999 55588888888 8999
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCCC-cHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQS-LVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~~-lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|+|+||+ .++||+|||||||||+.... ++..|..+|..||.++.+||...
T Consensus 253 g~I~v~~-~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 253 GYIVVDE-EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred CcEEcCC-CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 9999998 69999999999999998654 89999999999999999998653
No 119
>PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation []. GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.36 E-value=3.8e-13 Score=147.09 Aligned_cols=123 Identities=25% Similarity=0.410 Sum_probs=93.0
Q ss_pred CcEEEEEeCCccchhhhcccCCeeEeecCCcccccCccchhhhhcccceEEEecccccccccccCCceEEEeCCCCCCCC
Q psy12805 797 NSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFE 876 (1429)
Q Consensus 797 ~~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~~g~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~~~~~~ 876 (1429)
..++|.+.|+++..+|+. +.|.+|+|+||++++ ..+.+.+.+++.|+.+.||+||+|.|+
T Consensus 52 ~g~~I~V~G~ag~~~G~~-m~GG~I~V~Gn~~~~-----------~~~~~~~~~~~G~~~~~Gm~gG~i~V~-------- 111 (202)
T PF01493_consen 52 GGLKIVVEGDAGDYVGKG-MSGGTIIVKGNAGDD-----------DGGGIVVSGSAGDYLGYGMRGGTIFVQ-------- 111 (202)
T ss_dssp TTEEEEEEEEE-STTTTT--ECCEEEEE--TT--------------SS-GGGSEEC-SSTTTT--CEEEEES--------
T ss_pred CCeEEEEEecccchhHhh-CCCCEEEEECCcccc-----------cccceEeeeeeeccccccccceEEEEE--------
Confidence 456789999999999988 566699999999987 244477889999999999999999997
Q ss_pred CCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCCCcc
Q psy12805 877 SDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNF 943 (1429)
Q Consensus 877 ~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~ 943 (1429)
+.+|+-+...|++|+|.|.|+++..+|.+|.+|+++|.| +|+++|.-|.||+|+|.|++...+
T Consensus 112 ----G~aG~r~g~~m~gg~iiV~G~~g~~~g~~M~gG~ivV~G~~G~~~g~~m~gG~I~v~g~~~~~l 175 (202)
T PF01493_consen 112 ----GNAGSRAGIRMSGGTIIVEGNAGDFAGEYMTGGTIVVLGDAGDNAGAGMKGGTIYVRGPVEDSL 175 (202)
T ss_dssp ----SEE-TTTTTT-CCEEEEESEB--SSTTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS-TH
T ss_pred ----eccccceeeecceeEEEEeccccCCeeecccCCEEEEecCCCcccCCCCCCeEEEEcCCCcccc
Confidence 777888888999999999999999999999999999999 999999999999999999998444
No 120
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.33 E-value=1.6e-11 Score=153.58 Aligned_cols=162 Identities=24% Similarity=0.278 Sum_probs=111.7
Q ss_pred CCCceEEEccccccccHHHHHHhCCC-Ccccccccc--chhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEee-----
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGC-PLGNIIPKW--NDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTK----- 1309 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc-~V~~iLp~~--d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k----- 1309 (1429)
..++++|+|+|..+.+.+....++|. .+ .++... .++ ......+.+.. +.| +..+..+.++....
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v-~ii~r~~~~~~---~~~~~~~~~a~-~~GVki~~~~~~~~i~~~~~~~~~ 340 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEV-TIVYRRTREDM---PAHDEEIEEAL-REGVEINWLRTPVEIEGDENGATG 340 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEE-EEEEecCcccC---CCCHHHHHHHH-HcCCEEEecCCcEEEEcCCCCEEE
Confidence 46899999999998888876667773 33 111111 110 01122233332 345 33444455553210
Q ss_pred -----------cCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhc-cCccccCCCCEEecCCCCccCCCCEEEeC
Q psy12805 1310 -----------DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANE-LDLTLDPRSNYSTVEKTYLTTVPRVYAAG 1377 (1429)
Q Consensus 1310 -----------~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~-lGLeld~~G~I~VD~~~~~TSvPgVFAAG 1377 (1429)
+.+|+... ..++++++++|+||+|+|+.| +..++++ .+++ +++|+|.||+.+++||.|+|||+|
T Consensus 341 v~~~~~~~~~~~~~g~~~~--~~g~~~~i~~D~Vi~A~G~~p-~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~G 416 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSP--VTGEEETLEADLVVLAIGQDI-DSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGG 416 (564)
T ss_pred EEEEEEEecccCCCCCeee--cCCceEEEECCEEEECcCCCC-chhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEecc
Confidence 11121111 145667899999999999995 4556664 6788 789999999768899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy12805 1378 DCRRGQSLVVWAISEGRQAAREIDSFLMGTSTL 1410 (1429)
Q Consensus 1378 D~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~ 1410 (1429)
||+.++.+++.|+++|+.||.+|+++|.++...
T Consensus 417 D~~~g~~~v~~Av~~G~~aA~~i~~~L~g~~~~ 449 (564)
T PRK12771 417 DMVPGPRTVTTAIGHGKKAARNIDAFLGGEPYE 449 (564)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999987543
No 121
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.29 E-value=4e-11 Score=141.82 Aligned_cols=168 Identities=24% Similarity=0.282 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
.++++.++++++ ++||++. .+.....|..+.++|+|.|. .|+ |+++.+ .....+++|+..+++++..+
T Consensus 176 ~p~~l~~~i~~~-----~IPVI~G---~V~t~e~A~~~~~aGaDgV~-~G~-gg~~~~--~~~lg~~~p~~~ai~d~~~a 243 (369)
T TIGR01304 176 EPLNLKEFIGEL-----DVPVIAG---GVNDYTTALHLMRTGAAGVI-VGP-GGANTT--RLVLGIEVPMATAIADVAAA 243 (369)
T ss_pred CHHHHHHHHHHC-----CCCEEEe---CCCCHHHHHHHHHcCCCEEE-ECC-CCCccc--ccccCCCCCHHHHHHHHHHH
Confidence 366666666553 6899885 33345567778889999999 333 232222 12234789988888877653
Q ss_pred ----HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCH---------
Q psy12805 586 ----LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDP--------- 652 (1429)
Q Consensus 586 ----L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~--------- 652 (1429)
+.+.+.| .++||++|||+|+.|++||+++|||+|.+|++++.+..|. .+- |.+|.++..|
T Consensus 244 ~~~~~~e~g~r-~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eap-g~~-----~~w~~~~~~~~~~~~~~~~ 316 (369)
T TIGR01304 244 RRDYLDETGGR-YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAP-GRG-----YFWPAAAAHPRLPRGVVTE 316 (369)
T ss_pred HHHHHHhcCCC-CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCC-CCC-----CccchhhcCccCCcccccc
Confidence 4444444 5999999999999999999999999999999988877642 222 3444333333
Q ss_pred --------HHHhhcCC---cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcc
Q psy12805 653 --------ELRKKFAG---KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDL 697 (1429)
Q Consensus 653 --------~lr~~~~g---~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdl 697 (1429)
.|..-+.| .++...| +...||..|+++|++++.|+ -+.++
T Consensus 317 ~~~~~~~~~~~~~~~gp~~~~~~~~n----~~g~~~~~~~~~g~~~~~~~-~~~~~ 367 (369)
T TIGR01304 317 SGTVGEAPTLEEILHGPSTLPDGVEN----FEGGLKRAMAKCGYTDLKEF-QKVSL 367 (369)
T ss_pred ccccCCCCcHHHHeeCCCCCCcchhh----hHHHHHHHHHHcCchhhhhh-hhcce
Confidence 23333322 1344444 55688999999999999997 44443
No 122
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.26 E-value=3.2e-11 Score=148.19 Aligned_cols=174 Identities=19% Similarity=0.159 Sum_probs=125.0
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
.+.|++||+.+|+++|+++ .+.-...|..+.++|||+|.++-..|+++..+. ...+|+|.+.++.++.+.+.+.+
T Consensus 270 ~~~i~~ik~~~~~~~v~aG---~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~--~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAG---NVVTADQAKNLIDAGADGLRIGMGSGSICITQE--VCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred HHHHHHHHhhCCCceEEEC---CcCCHHHHHHHHHcCCCEEEECCcCCcccccch--hccCCCChHHHHHHHHHHHhhcC
Confidence 4578899988888999997 334445678899999999999756666655433 33799999999999998876554
Q ss_pred CCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccc--------cccccccCCCCccceecCHHHHhhcC---
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCT--------MMRKCHLNTCPVGIATQDPELRKKFA--- 659 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~--------~~r~c~~~~cP~giatqd~~lr~~~~--- 659 (1429)
+++|++|||+|+.|++||+++||++|.+|+.+.-.-.|. ..-||.-+-++.+..++.......|.
T Consensus 345 ----v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~ 420 (495)
T PTZ00314 345 ----VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENE 420 (495)
T ss_pred ----CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccc
Confidence 899999999999999999999999999999533221111 01123333344443331111111111
Q ss_pred -----C-------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcC
Q psy12805 660 -----G-------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVG 693 (1429)
Q Consensus 660 -----g-------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvG 693 (1429)
. ....|.+++..+..+||..|..+|.++|.||..
T Consensus 421 ~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred ccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 0 013588999999999999999999999999855
No 123
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.24 E-value=8.3e-11 Score=138.37 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCCCcccccc---ccccCCChHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSWTG---IKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~---~~~~GiP~~laL~ev~q 584 (1429)
.+.++++.+++.. ++||+||+.+.. .+..+|..+.++|+|.|++.++..+. ...+.. ...+|++....+..+.+
T Consensus 152 ~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~-~~d~~~~~~~~~~glsg~~~~~~al~ 229 (334)
T PRK07565 152 RYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQP-DIDLETLEVVPGLVLSTPAELRLPLR 229 (334)
T ss_pred HHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCC-CcChhhcccccCCCCCCchhhhHHHH
Confidence 3778899999876 799999998764 45567888899999999998774221 111111 12455554332222222
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEH 664 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~ 664 (1429)
.+...-.+.+++||++|||+|+.|+.+++++||++|+++|++|.- +
T Consensus 230 ~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~-------------------------------g--- 275 (334)
T PRK07565 230 WIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH-------------------------------G--- 275 (334)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh-------------------------------C---
Confidence 111111122689999999999999999999999999999977651 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 665 VINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 665 v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
..+++.+.+||+.+|.+.|+++++|++|..
T Consensus 276 -~~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 276 -PDYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred -cHHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 146889999999999999999999999854
No 124
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.23 E-value=7.2e-11 Score=136.05 Aligned_cols=174 Identities=19% Similarity=0.174 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+...+.|+.+|+..|+.+|++- ++.....+..+.++|||.|.+.=..|.....+ ...-.|.|.+.|+.++.+...
T Consensus 136 ~~~i~~ik~ik~~~P~~~vIaG---NV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr--~vtGvG~PQltAV~~~a~~a~ 210 (346)
T PRK05096 136 EHFVQFVAKAREAWPDKTICAG---NVVTGEMVEELILSGADIVKVGIGPGSVCTTR--VKTGVGYPQLSAVIECADAAH 210 (346)
T ss_pred HHHHHHHHHHHHhCCCCcEEEe---cccCHHHHHHHHHcCCCEEEEcccCCccccCc--cccccChhHHHHHHHHHHHHH
Confidence 4477889999999999999888 55666778889999999998764444443332 233678999999999998876
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC--cH---
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG--KP--- 662 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g--~~--- 662 (1429)
.. .++||+||||++..|++||+++|||+|.+|. |+| | +.++|-.+...+..+.|.|-| ..
T Consensus 211 ~~----gvpiIADGGi~~sGDI~KAlaaGAd~VMlGs--llA-G--------t~EsPGe~~~~~G~~~K~yrGMgS~~Am 275 (346)
T PRK05096 211 GL----GGQIVSDGGCTVPGDVAKAFGGGADFVMLGG--MLA-G--------HEESGGEIVEENGEKFMLFYGMSSESAM 275 (346)
T ss_pred Hc----CCCEEecCCcccccHHHHHHHcCCCEEEeCh--hhc-C--------cccCCCcEEEECCEEEEEEeccccHHHH
Confidence 55 4799999999999999999999999999998 443 2 457888887777655444422 10
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcccccc
Q psy12805 663 -----------------------EHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701 (1429)
Q Consensus 663 -----------------------e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~ 701 (1429)
-.|.+++..+..+||.-|...|.++|.||..+++++...
T Consensus 276 ~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt 337 (346)
T PRK05096 276 KRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQ 337 (346)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEEC
Confidence 137788899999999999999999999998888877653
No 125
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.23 E-value=9.6e-11 Score=135.12 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+...+.|+++|+.+|+.+|+.- ++.....|..+.++|||.|.|+=..|..+... ....+|.|.+.+|.++..+..
T Consensus 135 ~~~i~~ik~ir~~~p~~~viaG---NV~T~e~a~~Li~aGAD~ikVgiGpGSicttR--~~~Gvg~pqltAv~~~a~aa~ 209 (343)
T TIGR01305 135 EHFVEFVKLVREAFPEHTIMAG---NVVTGEMVEELILSGADIVKVGIGPGSVCTTR--TKTGVGYPQLSAVIECADAAH 209 (343)
T ss_pred HHHHHHHHHHHhhCCCCeEEEe---cccCHHHHHHHHHcCCCEEEEcccCCCcccCc--eeCCCCcCHHHHHHHHHHHhc
Confidence 4467789999999987555444 34456678889999999999983333333222 245678899999999998763
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC--c----
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG--K---- 661 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g--~---- 661 (1429)
.. +++||+|||||++.||+||+++|||+|.+|. |+|- ..++|-.+...+....|.|-| .
T Consensus 210 ~~----~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~--llAG---------~~Espg~~i~~~G~~~K~yrGMgS~~Am 274 (343)
T TIGR01305 210 GL----KGHIISDGGCTCPGDVAKAFGAGADFVMLGG--MFAG---------HTESGGEVIERNGRKFKLFYGMSSDTAM 274 (343)
T ss_pred cC----CCeEEEcCCcCchhHHHHHHHcCCCEEEECH--hhhC---------cCcCcceeEeECCEEEEEEeccchHHHH
Confidence 22 5899999999999999999999999999994 4432 245677776666544444422 0
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcccccc
Q psy12805 662 ----------------------PEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701 (1429)
Q Consensus 662 ----------------------~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~ 701 (1429)
.-.+.+++..+..+||.-|..+|.++|.||..+++++...
T Consensus 275 ~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt 336 (343)
T TIGR01305 275 KKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVT 336 (343)
T ss_pred hhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEEC
Confidence 0137788899999999999999999999998888877664
No 126
>PLN02826 dihydroorotate dehydrogenase
Probab=99.20 E-value=2.6e-10 Score=136.82 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=121.8
Q ss_pred chHHHHhccCCCCc-----cccccCCC--CCCCCCHHHHHHHHHHHHHh--------CCCCeEEEEecccc---ChHHHH
Q psy12805 479 VTKDIASTRHSVPG-----VGLISPPP--HHDIYSIEDLAELIYDLKCA--------NPNARISVKLVSEV---GVGVVA 540 (1429)
Q Consensus 479 V~~~iA~~r~~~pg-----~~LisP~~--h~di~siedL~qlI~~Lk~~--------~~~~pV~VKLv~e~---Gvg~vA 540 (1429)
+.++...++.+.+. +++-||+. .++....+.+.+++..+++. ..++||.||+.+.. .+..+|
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia 282 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 282 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHH
Confidence 34455444444432 33445653 34567788899999988754 23689999999876 366788
Q ss_pred HHHHhcCCcEEEEecCCCCC-C---cccccccc---ccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHH
Q psy12805 541 SGVAKGKAEHIVISGHDGGT-G---ASSWTGIK---NAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVA 612 (1429)
Q Consensus 541 ~~~akaGaD~I~IsG~~GGT-g---aap~~~~~---~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kA 612 (1429)
..+.++|+|.|++++.--+. . ..+. ... -.|-|. ..++..+.+..... ..+++||++|||.|+.|+++.
T Consensus 283 ~~a~~~G~dGIi~~NTt~~r~~dl~~~~~-~~~~GGlSG~pl~~~sl~~v~~l~~~~--~~~ipIIgvGGI~sg~Da~e~ 359 (409)
T PLN02826 283 AVALALGIDGLIISNTTISRPDSVLGHPH-ADEAGGLSGKPLFDLSTEVLREMYRLT--RGKIPLVGCGGVSSGEDAYKK 359 (409)
T ss_pred HHHHHcCCCEEEEEcccCcCccchhcccc-cccCCCcCCccccHHHHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHH
Confidence 88999999999999742110 0 0000 001 123331 23444444332222 346999999999999999999
Q ss_pred HHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhc
Q psy12805 613 ALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLV 692 (1429)
Q Consensus 613 laLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~Elv 692 (1429)
+++||++|+++|+++.- ++ .++..+.+||.++|.+.|+++++|++
T Consensus 360 i~AGAs~VQv~Ta~~~~-------------------------------Gp----~~i~~I~~eL~~~l~~~G~~si~e~i 404 (409)
T PLN02826 360 IRAGASLVQLYTAFAYE-------------------------------GP----ALIPRIKAELAACLERDGFKSIQEAV 404 (409)
T ss_pred HHhCCCeeeecHHHHhc-------------------------------CH----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 99999999999976651 12 35788999999999999999999999
Q ss_pred CC
Q psy12805 693 GR 694 (1429)
Q Consensus 693 Gr 694 (1429)
|.
T Consensus 405 G~ 406 (409)
T PLN02826 405 GA 406 (409)
T ss_pred Cc
Confidence 94
No 127
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.18 E-value=2e-10 Score=140.34 Aligned_cols=175 Identities=17% Similarity=0.125 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.++|+.+|+.+|++||++- ++.....+..+.++|||+|.|.+..|..... .....||.|+..++.++.+.+.
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g---~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~tt--r~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAG---NVVSAEGVRDLLEAGANIIKVGVGPGAMCTT--RMMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEe---ccCCHHHHHHHHHhCCCEEEECCcCCccccC--ccccCCCCchHHHHHHHHHHHH
Confidence 6788999999999999999995 3345556788999999999999887665433 3456889999999999988876
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCcccee-cCHHHHh----------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT-QDPELRK---------- 656 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giat-qd~~lr~---------- 656 (1429)
.. .++||++|||+++.|++||+++||++|++|+. +| | +.+.|-.+.. ++....|
T Consensus 326 ~~----~~~viadGgi~~~~di~kala~GA~~vm~g~~--~a-g--------~~espg~~~~~~~g~~~k~yrGmgs~~a 390 (475)
T TIGR01303 326 KL----GGHVWADGGVRHPRDVALALAAGASNVMVGSW--FA-G--------TYESPGDLMRDRDGRPYKESFGMASKRA 390 (475)
T ss_pred Hc----CCcEEEeCCCCCHHHHHHHHHcCCCEEeechh--hc-c--------cccCCCceEEeECCEEEEEEecccCHHH
Confidence 55 48999999999999999999999999999983 32 2 2344544443 2211111
Q ss_pred -----------------hcCCcH-----------HHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccccC
Q psy12805 657 -----------------KFAGKP-----------EHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702 (1429)
Q Consensus 657 -----------------~~~g~~-----------e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~ 702 (1429)
.+..+. ..|.+++..+..+||.-|..+|.++|.||..+..++....
T Consensus 391 ~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~ 464 (475)
T TIGR01303 391 VVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSG 464 (475)
T ss_pred HhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEEEEcc
Confidence 111111 1277889999999999999999999999988888777654
No 128
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.18 E-value=1.7e-10 Score=140.82 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.+.|+++|+.+|++||+++- +.....|..+.++|||+|.++-+.|+++..+ ....+|.|.+.++.++++.+.
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~---v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~--~~~~~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGN---VATAEQAKALIDAGADGLRVGIGPGSICTTR--IVAGVGVPQITAVYDVAEYAA 324 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEe---CCCHHHHHHHHHhCCCEEEECCCCCcCCccc--eecCCCccHHHHHHHHHHHHh
Confidence 45778899999998899999983 3455567889999999999964556655443 234789999999999998775
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhc---------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF--------- 658 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~--------- 658 (1429)
.. .++||++|||+|+.|++||+++||++|.+|+.+.- +.+||-.+..++....|.|
T Consensus 325 ~~----~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~-----------~~e~pg~~~~~~g~~~k~yrgm~s~~a~ 389 (450)
T TIGR01302 325 QS----GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAG-----------TTESPGEYEIINGRRYKQYRGMGSLGAM 389 (450)
T ss_pred hc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhc-----------CCcCCCceEEECCEEEEEEeccchHHHH
Confidence 44 58999999999999999999999999999994322 2345555544432221111
Q ss_pred -------------------CCc-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q psy12805 659 -------------------AGK-------PEHVINYLFMLAEEVRTHMAKLGIRKFADL 691 (1429)
Q Consensus 659 -------------------~g~-------~e~v~ny~~~l~~eLr~iMa~mGi~sl~El 691 (1429)
..+ .-.|.+++..+..+||.-|..+|.+|+.||
T Consensus 390 ~~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 448 (450)
T TIGR01302 390 TKGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448 (450)
T ss_pred hccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHH
Confidence 100 135788899999999999999999999997
No 129
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.18 E-value=2.8e-10 Score=133.52 Aligned_cols=146 Identities=21% Similarity=0.208 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCCCcccccc---ccccCCCh----HHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSWTG---IKNAGLPW----ELGV 579 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~---~~~~GiP~----~laL 579 (1429)
+.+.++++.+++.. ++||+||+.+.. .+..++..+.++|+|.|++.++..+.. ..+.. ...+|++. ..+|
T Consensus 149 ~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~-id~~~~~~~~~~glSG~~~~~~al 226 (325)
T cd04739 149 QRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRLPL 226 (325)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCC-ccccccceecCCCcCCccchhHHH
Confidence 45788999999886 799999999874 466788889999999999998742211 11100 11233221 1334
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 659 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~ 659 (1429)
..+.+.- . +.+++|+++|||+|+.|+.+++++||++|+++|+.|.-
T Consensus 227 ~~v~~v~--~--~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~------------------------------ 272 (325)
T cd04739 227 RWIAILS--G--RVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH------------------------------ 272 (325)
T ss_pred HHHHHHH--c--ccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc------------------------------
Confidence 3333322 1 22699999999999999999999999999999977651
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q psy12805 660 GKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGR 694 (1429)
Q Consensus 660 g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGr 694 (1429)
+ ..++..+.+||..+|.+.|+++++|++|.
T Consensus 273 -g----p~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 -G----PDYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred -C----chHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 1 13688899999999999999999999994
No 130
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.17 E-value=1.6e-10 Score=142.19 Aligned_cols=174 Identities=16% Similarity=0.224 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.+.|+.+|+.+|+.||+++ .+.....|..+.++|+|+|.+.+..|....++ ....||+|++.++.++.+.+.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g---~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r--~~~~~g~p~~~~~~~~~~~~~ 328 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAG---NVATAEAARALIEAGADAVKVGIGPGSICTTR--IVAGVGVPQITAIADAAEAAK 328 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEe---ccCCHHHHHHHHHcCCCEEEECCCCCccccce--eecCCCcCHHHHHHHHHHHhc
Confidence 5677889999999889999998 44455567889999999999855333222121 356899999999999987663
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhc---------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF--------- 658 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~--------- 658 (1429)
. ..++||+||||+|+.|++||+++||++|.+|+.+-- +.++|-.+...+....|.|
T Consensus 329 ~----~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~-----------~~e~pg~~~~~~g~~~k~y~gm~s~~a~ 393 (486)
T PRK05567 329 K----YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAG-----------TEEAPGEVELYQGRSYKSYRGMGSLGAM 393 (486)
T ss_pred c----CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccc-----------cccCCCceEEECCEEEEEEeccchHHHH
Confidence 2 258999999999999999999999999999983311 2344444443321111111
Q ss_pred -------------------CC-------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcccccc
Q psy12805 659 -------------------AG-------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701 (1429)
Q Consensus 659 -------------------~g-------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~ 701 (1429)
.. ....|.+++..+..+||.-|..+|.++|.|+..+..++...
T Consensus 394 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~t 462 (486)
T PRK05567 394 SKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRIT 462 (486)
T ss_pred hcccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhcCeEEEEC
Confidence 00 01247788899999999999999999999997776666553
No 131
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.17 E-value=3.1e-10 Score=131.03 Aligned_cols=156 Identities=18% Similarity=0.292 Sum_probs=119.0
Q ss_pred CCCC-CHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCC-CCC----c-cccccccccCC
Q psy12805 502 HDIY-SIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDG-GTG----A-SSWTGIKNAGL 573 (1429)
Q Consensus 502 ~di~-siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~G-GTg----a-ap~~~~~~~Gi 573 (1429)
+++. +.|.+.++++.+|+.. ++||.|||.|+. ++..+|..+.++|+|.|++.+.-. +.. . .|.....+-|+
T Consensus 140 ~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL 218 (310)
T COG0167 140 RALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL 218 (310)
T ss_pred hhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCc
Confidence 3554 8889999999999997 799999999843 677899999999999999987533 110 0 11111222233
Q ss_pred ---Ch-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCcccee
Q psy12805 574 ---PW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT 649 (1429)
Q Consensus 574 ---P~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giat 649 (1429)
|. ..++..+++...+. ..+++||..|||.|+.|+++.+++||++|+++|+.+.
T Consensus 219 SG~~ikp~al~~v~~l~~~~--~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~--------------------- 275 (310)
T COG0167 219 SGPPLKPIALRVVAELYKRL--GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY--------------------- 275 (310)
T ss_pred CcccchHHHHHHHHHHHHhc--CCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee---------------------
Confidence 22 46666666644333 4579999999999999999999999999999996554
Q ss_pred cCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 650 QDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 650 qd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
..| ..++.+.++|.++|...|++|++|++|..
T Consensus 276 ~Gp--------------~i~~~I~~~l~~~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 276 KGP--------------GIVKEIIKGLARWLEEKGFESIQDIIGSA 307 (310)
T ss_pred eCc--------------hHHHHHHHHHHHHHHHcCCCCHHHHhchh
Confidence 112 35899999999999999999999999965
No 132
>cd00982 gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS.
Probab=99.16 E-value=4.6e-11 Score=133.50 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=78.9
Q ss_pred cEEEEEeCCccchhhhcccCCeeEeecCCcccc-cC-----ccchhhhhcccceEEEecccccccccccCCceEEEeCCC
Q psy12805 798 SINLKLTGSAGQSFCAFLVRGVHVTLEGDANDY-VG-----KESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPK 871 (1429)
Q Consensus 798 ~i~i~~~g~aG~s~Ga~~~~G~~i~v~g~~~~~-~g-----~~~~~g~~~~~~~i~l~G~and~vgkgmsGG~ivv~p~~ 871 (1429)
-++|.++|.|+..+|.. +.|.+|+|.||+++. .+ ..-++++.|+||+|.|.|+|++.+|-.||||.+
T Consensus 74 G~~i~v~G~A~dyvGk~-m~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~AG~R~gvr~sG~~i------ 146 (251)
T cd00982 74 GVTLELEGDANDYVGKG-LSGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRAGERFAVRNSGATA------ 146 (251)
T ss_pred CCEEEEEeccccccccc-ccCCEEEEECCCcccccccccceehhhhhhccCCCEEEEeccccceeeeccCCCEE------
Confidence 35688899999999988 556688888888751 10 112334444555555555555555555555554
Q ss_pred CCCCCCCccceeccccccccccCceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCC
Q psy12805 872 TSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTG 940 (1429)
Q Consensus 872 ~~~~~~~~n~~~Gn~~~yg~tgG~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g 940 (1429)
+|.| +|..+|.+|.||++||.| +|.+.|.-|+||++.|+|...
T Consensus 147 -------------------------VV~G-~Gd~~~EyMtGG~ivVlG~~G~~~gaGM~gG~iyv~~~~~ 190 (251)
T cd00982 147 -------------------------VVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGVAYVLDEDG 190 (251)
T ss_pred -------------------------EEEe-cccceeccccCCEEEEECCCCcCcccCCCCCEEEEECCcC
Confidence 4557 688899999999999999 899999999999999998764
No 133
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.14 E-value=6e-10 Score=132.61 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCC-CCc-----ccccc----ccccCC
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGG-TGA-----SSWTG----IKNAGL 573 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GG-Tga-----ap~~~----~~~~Gi 573 (1429)
.++|-+.++++.+|+.. ++||+|||.+.. .+..+|..+.++|+|.|++.+.-.. .+- .|... ...-|+
T Consensus 165 q~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 165 QDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred cCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 47888999999999886 799999999976 6777889899999999999886542 111 11000 012222
Q ss_pred C---h-HHHHHHHHHHHHhcC--CCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccc
Q psy12805 574 P---W-ELGVAETHQVLALNN--LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGI 647 (1429)
Q Consensus 574 P---~-~laL~ev~q~L~~~g--LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~gi 647 (1429)
. . .++|..+++...... ...+++|++.|||.|++|+++.+++||++|+++|+.+. -|
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~-~G---------------- 306 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM-HG---------------- 306 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee-cC----------------
Confidence 1 1 245555554433321 12358999999999999999999999999999997664 11
Q ss_pred eecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 648 ATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 648 atqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
..+++.+.+||.++|.+.|+++++|++|++
T Consensus 307 ------------------p~vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 307 ------------------YPLVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred ------------------cHHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 145888999999999999999999999976
No 134
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.14 E-value=4.2e-11 Score=145.61 Aligned_cols=91 Identities=43% Similarity=0.622 Sum_probs=77.2
Q ss_pred EEEeCCCeeEEEecEEEEeccccCchhhh-hhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHH
Q psy12805 1317 MDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQ 1395 (1429)
Q Consensus 1317 ~v~~~gse~~ieaDlVLlAiG~~pp~~~L-le~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~ 1395 (1429)
.+.+.|++.++++|+|+.|+|+.++...+ ....++..+++|++.+++...+||+|+|||+||+.+++.++++|+.+||.
T Consensus 362 p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~ 441 (457)
T COG0493 362 PVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGRE 441 (457)
T ss_pred CccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchH
Confidence 44567888899999999999999776654 33447889999999999843499999999999999999999999999999
Q ss_pred HHHHHH-HHHhCC
Q psy12805 1396 AAREID-SFLMGT 1407 (1429)
Q Consensus 1396 AA~nI~-~~L~g~ 1407 (1429)
||+.|+ .+|++.
T Consensus 442 aak~i~~~~l~~~ 454 (457)
T COG0493 442 AAKAIDKELLLGK 454 (457)
T ss_pred HHHhhhHHHHhhc
Confidence 999999 555443
No 135
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.13 E-value=4.1e-10 Score=138.52 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=129.9
Q ss_pred Cccccc---cCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCcccccc
Q psy12805 491 PGVGLI---SPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTG 567 (1429)
Q Consensus 491 pg~~Li---sP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~ 567 (1429)
.|++.+ +.++|.++ ..+.|+.+|+.+| .++.|+-. ++.....|..+.++|||+|.|+.+.|.....+ .
T Consensus 253 aGvd~i~vd~a~g~~~~-----~~~~i~~ir~~~~-~~~~V~aG-nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr--~ 323 (502)
T PRK07107 253 AGADVLCIDSSEGYSEW-----QKRTLDWIREKYG-DSVKVGAG-NVVDREGFRYLAEAGADFVKVGIGGGSICITR--E 323 (502)
T ss_pred hCCCeEeecCcccccHH-----HHHHHHHHHHhCC-CCceEEec-cccCHHHHHHHHHcCCCEEEECCCCCcCcccc--c
Confidence 355444 45454433 3567888888875 33555521 33344567889999999999966655322221 1
Q ss_pred ccccCCChHHHHHHHHHHHHh----cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCC
Q psy12805 568 IKNAGLPWELGVAETHQVLAL----NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTC 643 (1429)
Q Consensus 568 ~~~~GiP~~laL~ev~q~L~~----~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~c 643 (1429)
.-..|.|.+.++.++.++..+ .|. +++||+|||||++.||+||+++|||+|.+|+. +| | +.++
T Consensus 324 ~~~~g~~~~~ai~~~~~a~~~~~~~~g~--~~~viadgGir~~gdi~KAla~GA~~vm~G~~--~a-g--------~~es 390 (502)
T PRK07107 324 QKGIGRGQATALIEVAKARDEYFEETGV--YIPICSDGGIVYDYHMTLALAMGADFIMLGRY--FA-R--------FDES 390 (502)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhhcCC--cceEEEcCCCCchhHHHHHHHcCCCeeeeChh--hh-c--------cccC
Confidence 235788999999999886532 342 48999999999999999999999999999983 22 2 2456
Q ss_pred CccceecCHHHHhhcCC-------------------------------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhc
Q psy12805 644 PVGIATQDPELRKKFAG-------------------------------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLV 692 (1429)
Q Consensus 644 P~giatqd~~lr~~~~g-------------------------------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~Elv 692 (1429)
|-.+..++..+.|.|.| ....+.+++..+..+||.-|..+|.++|.||.
T Consensus 391 pg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~ 470 (502)
T PRK07107 391 PTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQ 470 (502)
T ss_pred CCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHH
Confidence 66655544333222211 01237788899999999999999999999997
Q ss_pred CCCcccccc
Q psy12805 693 GRTDLLKPR 701 (1429)
Q Consensus 693 Grsdll~~~ 701 (1429)
.+..++...
T Consensus 471 ~~~~f~~~t 479 (502)
T PRK07107 471 QKAKITLVS 479 (502)
T ss_pred hCCeEEEEC
Confidence 777666553
No 136
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.11 E-value=3.9e-10 Score=132.16 Aligned_cols=173 Identities=22% Similarity=0.284 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+...+.|+.||+.+|+.||++- ++.....|..+.++|||.|.+.=..|..... ....-+|.|.+.++.++.+...
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaG---NV~T~e~a~~L~~aGad~vkVGiGpGsiCtT--r~v~GvG~PQ~tAv~~~a~~a~ 208 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAG---NVVTYEGAKDLIDAGADAVKVGIGPGSICTT--REVTGVGVPQLTAVYECAEAAR 208 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEE---EE-SHHHHHHHHHTT-SEEEESSSSSTTBHH--HHHHSBSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEec---ccCCHHHHHHHHHcCCCEEEEeccCCccccc--ccccccCCcHHHHHHHHHHHhh
Confidence 4567789999999999999988 4556677888999999999975333332221 1233578999999999999876
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHH-------------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL------------- 654 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~l------------- 654 (1429)
+. .++||+||||+++.|++|||++|||+|.+|+ |+| | +.++|-.+...+...
T Consensus 209 ~~----~v~iIADGGi~~sGDi~KAla~GAd~VMlG~--llA-g--------t~EsPG~~~~~~g~~~K~yrGMgS~~A~ 273 (352)
T PF00478_consen 209 DY----GVPIIADGGIRTSGDIVKALAAGADAVMLGS--LLA-G--------TDESPGEVIYIDGKRYKKYRGMGSLGAM 273 (352)
T ss_dssp CT----TSEEEEESS-SSHHHHHHHHHTT-SEEEEST--TTT-T--------BTTSSSEEEEETTEEEEEEEETTSHHHH
T ss_pred hc----cCceeecCCcCcccceeeeeeecccceeech--hhc-c--------CcCCCCceEEECCeEEEEecccccHHHH
Confidence 55 5999999999999999999999999999998 332 2 335555554433111
Q ss_pred ------Hhhc---------CCc-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccc
Q psy12805 655 ------RKKF---------AGK-------PEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKP 700 (1429)
Q Consensus 655 ------r~~~---------~g~-------~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~ 700 (1429)
..+| ..+ .-.|.+++..+..+||.-|..+|.++|.||..+..++..
T Consensus 274 ~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~fvrv 341 (352)
T PF00478_consen 274 KKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARFVRV 341 (352)
T ss_dssp HHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEEEEE
T ss_pred hhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeEEEE
Confidence 1122 010 135889999999999999999999999998655544443
No 137
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.10 E-value=9.4e-10 Score=127.48 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCCC-----ccccccccccCC--C--
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTG-----ASSWTGIKNAGL--P-- 574 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGTg-----aap~~~~~~~Gi--P-- 574 (1429)
.+++.+.++++.+|+.. +.||+||+.+.. ....+|..+.++|+|.|++++.-.+.. ..|......-|+ |
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 140 QDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 47788999999999986 789999998653 345577788999999999986532210 000000000111 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHH
Q psy12805 575 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL 654 (1429)
Q Consensus 575 ~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~l 654 (1429)
+.+++..+.+.... .+++||+.|||+|+.|+.+++..|||+|++||+++. +|
T Consensus 219 ~~~~l~~v~~i~~~----~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----------------------~p-- 270 (300)
T TIGR01037 219 KPIALRMVYDVYKM----VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----------------------RG-- 270 (300)
T ss_pred hHHHHHHHHHHHhc----CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----------------------Cc--
Confidence 12344444443221 248999999999999999999999999999997664 22
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 655 RKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 655 r~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
.++..+.++|.++|.++|+++++|++|++
T Consensus 271 ------------~~~~~i~~~l~~~~~~~g~~~~~e~~g~~ 299 (300)
T TIGR01037 271 ------------FAFKKIIEGLIAFLKAEGFTSIEELIGIA 299 (300)
T ss_pred ------------hHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 46889999999999999999999999965
No 138
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.07 E-value=1.8e-09 Score=124.80 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCCCcc-----cccccc---ccCCC-
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGAS-----SWTGIK---NAGLP- 574 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGTgaa-----p~~~~~---~~GiP- 574 (1429)
.+++.+.++++.+|+.. +.||.||+.+.. ....+|..+.++|+|.|++.+.-.+..-. |..... ..|.+
T Consensus 137 ~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 215 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI 215 (296)
T ss_pred CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc
Confidence 57888999999999987 799999998754 35557788899999999998654331100 100000 01111
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHH
Q psy12805 575 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL 654 (1429)
Q Consensus 575 ~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~l 654 (1429)
+..++..+.+.... .+++||+.|||.|+.|+.+++.+|||+|+++|+++. +|
T Consensus 216 ~~~~~~~i~~i~~~----~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~----------------------~p-- 267 (296)
T cd04740 216 KPIALRMVYQVYKA----VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV----------------------DP-- 267 (296)
T ss_pred chHHHHHHHHHHHh----cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc----------------------Ch--
Confidence 11233333332111 158999999999999999999999999999997664 22
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 655 RKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 655 r~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
.++..+.++|.++|.+.|+++++|++|++
T Consensus 268 ------------~~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 296 (296)
T cd04740 268 ------------EAFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 46888999999999999999999999863
No 139
>KOG0404|consensus
Probab=99.06 E-value=3e-10 Score=123.09 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=116.9
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhCC-C--CCCcEEEEEEEeecCCCceE
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNN-F--PAGIKTVKVEWTKDATGRWK 1316 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G-~--~~gv~v~~Ve~~k~~~G~~~ 1316 (1429)
..+-++|||+|+.+||-+..+...+.+|-.+.++-.- ..+..+++...+|. + ..+..+.+.....+.-+.++
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f-----RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ 230 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF-----RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLR 230 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh-----hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceE
Confidence 3467999999999999999999999998666554222 34444555444442 2 22222222211101011122
Q ss_pred EE-EeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHH
Q psy12805 1317 MD-EVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGR 1394 (1429)
Q Consensus 1317 ~v-~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr 1394 (1429)
.. ...|++..++++-+|.++|.. |++.+++. .+++|++|+|+|-+..-.||+||+|||||+.+ .+.+++.|...|.
T Consensus 231 ikn~~tge~~dl~v~GlFf~IGH~-Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGc 308 (322)
T KOG0404|consen 231 IKNVKTGEETDLPVSGLFFAIGHS-PATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGC 308 (322)
T ss_pred EEecccCcccccccceeEEEecCC-chhhHhcC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccch
Confidence 22 245677789999999999998 67788887 89999999999987788999999999999987 4678999999999
Q ss_pred HHHHHHHHHHhC
Q psy12805 1395 QAAREIDSFLMG 1406 (1429)
Q Consensus 1395 ~AA~nI~~~L~g 1406 (1429)
.||...-+||+.
T Consensus 309 iaaldAe~yL~s 320 (322)
T KOG0404|consen 309 IAALDAERYLTS 320 (322)
T ss_pred hhhhhHHHHhhc
Confidence 999999999974
No 140
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.05 E-value=3.1e-09 Score=123.98 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHH---hcCCcEEEEecCCCC-------CCccccc--cccccCC
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVA---KGKAEHIVISGHDGG-------TGASSWT--GIKNAGL 573 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~a---kaGaD~I~IsG~~GG-------Tgaap~~--~~~~~Gi 573 (1429)
+++.+.+++..+|+.. ++||+|||.+......++..+. +.|++.|+..+.-|. ++ .+.. ....-|+
T Consensus 141 d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~-~~~~~~~~~~GGl 218 (310)
T PRK02506 141 DFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDE-TVVIKPKNGFGGI 218 (310)
T ss_pred CHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCC-CccccCCCCCCcC
Confidence 5788999999999986 7899999999887766665544 446666655443210 10 0110 0111111
Q ss_pred --Ch--HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCcccee
Q psy12805 574 --PW--ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT 649 (1429)
Q Consensus 574 --P~--~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giat 649 (1429)
|+ ..+|..+++..... ..+++||++|||.|+.|+++.+++||++|+++|+.+.-
T Consensus 219 SG~~i~p~al~~v~~~~~~~--~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~-------------------- 276 (310)
T PRK02506 219 GGDYIKPTALANVRAFYQRL--NPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKE-------------------- 276 (310)
T ss_pred CchhccHHHHHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHh--------------------
Confidence 22 35666666554333 24689999999999999999999999999999977751
Q ss_pred cCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 650 QDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 650 qd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
+| .++..+.+||.++|.+.|+++++|++|+.
T Consensus 277 -gp--------------~~~~~i~~~L~~~l~~~g~~si~e~~G~~ 307 (310)
T PRK02506 277 -GP--------------AVFERLTKELKAIMAEKGYQSLEDFRGKL 307 (310)
T ss_pred -Ch--------------HHHHHHHHHHHHHHHHhCCCCHHHHhChh
Confidence 11 45888999999999999999999999954
No 141
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.02 E-value=4.7e-09 Score=121.85 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCCCccccc-----cccccCC--Ch-
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSWT-----GIKNAGL--PW- 575 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~-----~~~~~Gi--P~- 575 (1429)
.+++-+.++++.+|+.. +.||.||+.+.. .+..+|..+.++|+|.|++.+...+..-.... ....-|+ |.
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 218 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAI 218 (301)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCc
Confidence 46788999999999987 799999998754 45567888899999999987643221100000 0000011 00
Q ss_pred -HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHH
Q psy12805 576 -ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL 654 (1429)
Q Consensus 576 -~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~l 654 (1429)
..++..+.+.... .+++|++.|||+|+.|+.++++.|||+|+++|+.+. +|
T Consensus 219 ~p~~l~~v~~i~~~----~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~----------------------~P-- 270 (301)
T PRK07259 219 KPIALRMVYQVYQA----VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY----------------------DP-- 270 (301)
T ss_pred ccccHHHHHHHHHh----CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc----------------------Cc--
Confidence 1233334332211 258999999999999999999999999999997664 23
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 655 RKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 655 r~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
.+++.+.+++..+|.+.|+++++|++|.+
T Consensus 271 ------------~~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 271 ------------YAFPKIIEGLEAYLDKYGIKSIEEIVGIA 299 (301)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCHHHHhCcc
Confidence 45888999999999999999999999854
No 142
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.02 E-value=1.8e-09 Score=133.10 Aligned_cols=165 Identities=19% Similarity=0.146 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhc
Q psy12805 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 589 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~ 589 (1429)
..+.|+++|+.+|+.+|+++ .+.....|..+.++|||+|.++.+.|..+..+.. ...|.|...++..+.+.+..
T Consensus 276 ~~~~i~~ik~~~p~~~vi~g---~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~--~~~g~~~~~~i~~~~~~~~~- 349 (505)
T PLN02274 276 QLEMIKYIKKTYPELDVIGG---NVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEV--CAVGRGQATAVYKVASIAAQ- 349 (505)
T ss_pred HHHHHHHHHHhCCCCcEEEe---cCCCHHHHHHHHHcCcCEEEECCCCCccccCccc--cccCCCcccHHHHHHHHHHh-
Confidence 34678899999989999999 4445556788999999999998776654443221 13456665555555554432
Q ss_pred CCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhc-----------
Q psy12805 590 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF----------- 658 (1429)
Q Consensus 590 gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~----------- 658 (1429)
.+++||++|||+++.|++||+++||++|.+|+.+.-.- +||-.....+....|.|
T Consensus 350 ---~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~-----------Esp~~~~~~~g~~~k~yrgmgs~~a~~~ 415 (505)
T PLN02274 350 ---HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTT-----------EAPGEYFYQDGVRVKKYRGMGSLEAMTK 415 (505)
T ss_pred ---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccc-----------cCCcceeeeCCeEEEEEeccchHHHHhc
Confidence 25899999999999999999999999999999665432 34433333322211111
Q ss_pred ---------------CCc-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q psy12805 659 ---------------AGK-------PEHVINYLFMLAEEVRTHMAKLGIRKFADLVGR 694 (1429)
Q Consensus 659 ---------------~g~-------~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGr 694 (1429)
..+ .-.|.+++..+..+||.-|..+|.+||.||..+
T Consensus 416 ~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 416 GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 100 134778899999999999999999999998544
No 143
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.1e-10 Score=129.20 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=116.7
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhC-C--CCCCcEEEEEEEe-ecCCCce
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTN-N--FPAGIKTVKVEWT-KDATGRW 1315 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~-G--~~~gv~v~~Ve~~-k~~~G~~ 1315 (1429)
..++++|||+|..|+|.+.-++ |.--+..+-.|++-+ ...+.+++.|... | +..++.+++|..+ +.-.| +
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLA--Giv~hVtllEF~~eL---kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~G-l 426 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLA--GIVEHVTLLEFAPEL---KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTG-L 426 (520)
T ss_pred CCceEEEECCCcchHHHHHhHH--hhhheeeeeecchhh---hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecc-e
Confidence 4578999999999999888776 322233333443311 2234455555443 3 6668888888653 11123 2
Q ss_pred EEEE-eCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCC-CCcHHHHHHHH
Q psy12805 1316 KMDE-VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG-QSLVVWAISEG 1393 (1429)
Q Consensus 1316 ~~v~-~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g-~~lvv~Ai~qG 1393 (1429)
.+.. .+|+...++-+-||+-+|.. |++.|++.. ++++++|.|.||. ...||+|||||||||+.. +.+++.|+.+|
T Consensus 427 ~Y~dr~sge~~~l~LeGvFVqIGL~-PNT~WLkg~-vel~~rGEIivD~-~g~TsvpGvFAAGD~T~~~yKQIIIamG~G 503 (520)
T COG3634 427 EYRDRVSGEEHHLELEGVFVQIGLL-PNTEWLKGA-VELNRRGEIIVDA-RGETNVPGVFAAGDCTTVPYKQIIIAMGEG 503 (520)
T ss_pred EEEeccCCceeEEEeeeeEEEEecc-cChhHhhch-hhcCcCccEEEec-CCCcCCCceeecCcccCCccceEEEEecCc
Confidence 3433 45677788889999999999 677888887 9999999999997 899999999999999874 57899999999
Q ss_pred HHHHHHHHHHHhC
Q psy12805 1394 RQAAREIDSFLMG 1406 (1429)
Q Consensus 1394 r~AA~nI~~~L~g 1406 (1429)
..|+-....||-.
T Consensus 504 A~AaL~AFDyLIR 516 (520)
T COG3634 504 AKASLSAFDYLIR 516 (520)
T ss_pred chhhhhhhhhhee
Confidence 9999998888754
No 144
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.94 E-value=8.2e-09 Score=126.98 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=71.8
Q ss_pred CCCeeEEEecEEEEeccccC-chhhh--hhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCC-cHHHHHHHHHHH
Q psy12805 1321 PNSEKIFKCDLVLLAMGFLG-PERYI--ANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQS-LVVWAISEGRQA 1396 (1429)
Q Consensus 1321 ~gse~~ieaDlVLlAiG~~p-p~~~L--le~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~-lvv~Ai~qGr~A 1396 (1429)
+|+.++++||+||.|+|+.+ |...+ -...|+..+.+|+|.+|+ .++|++|||||+|||.+++. ++.+++.+|+.+
T Consensus 335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~t 413 (491)
T PLN02852 335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGIIGTNLTCAEET 413 (491)
T ss_pred CCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCeeeecHhhHHHH
Confidence 45667899999999999973 33333 344577888899999986 67899999999999999887 899999999999
Q ss_pred HHHHHHHHhCC
Q psy12805 1397 AREIDSFLMGT 1407 (1429)
Q Consensus 1397 A~nI~~~L~g~ 1407 (1429)
+.+|..++...
T Consensus 414 a~~i~~d~~~~ 424 (491)
T PLN02852 414 VASIAEDLEQG 424 (491)
T ss_pred HHHHHHHHHcC
Confidence 99999998753
No 145
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.94 E-value=7.7e-09 Score=137.28 Aligned_cols=183 Identities=10% Similarity=-0.061 Sum_probs=124.3
Q ss_pred ceEEEccCCCCCcCC-----ccCccchHHHHhhc-----cCCCceEEEccccccccHHHHHHhCCCCccccccccchhhc
Q psy12805 1210 GFIKYSRETAPYRPA-----EKRLKDWDEIYATQ-----HVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIY 1279 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~-----~~rv~D~~el~~l~-----~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf 1279 (1429)
..+.+|||+.|..++ ...+.+...+.... ...++++|+|+|.++++++..+...|.++..++..-.
T Consensus 276 ~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~---- 351 (985)
T TIGR01372 276 KRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA---- 351 (985)
T ss_pred CEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc----
Confidence 348899999987663 22333333222221 1358999999999999999999988977654543222
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEE---eCCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDE---VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~---~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
.+...+.+.++++| +..+..+.++.. ++.+..+. ..++.++++||.|++++|++ |+..|++.+|+++.
T Consensus 352 --~~~~~l~~~L~~~GV~i~~~~~v~~i~g----~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~-Pnt~L~~~lg~~~~ 424 (985)
T TIGR01372 352 --DVSPEARAEARELGIEVLTGHVVAATEG----GKRVSGVAVARNGGAGQRLEADALAVSGGWT-PVVHLFSQRGGKLA 424 (985)
T ss_pred --chhHHHHHHHHHcCCEEEcCCeEEEEec----CCcEEEEEEEecCCceEEEECCEEEEcCCcC-chhHHHHhcCCCee
Confidence 23344566777777 455777777743 22222122 23566789999999999999 67788888887653
Q ss_pred CCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1355 ~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
-+..... ..-.|++|+|||||||++ ...+..|+.+|+.||..|+..|..
T Consensus 425 ~~~~~~~--~~~~t~v~gVyaaGD~~g-~~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 425 WDAAIAA--FLPGDAVQGCILAGAANG-LFGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred eccccCc--eecCCCCCCeEEeeccCC-ccCHHHHHHHHHHHHHHHHHHcCC
Confidence 1111100 012488999999999985 456788999999999999988865
No 146
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.87 E-value=2.2e-08 Score=121.48 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCC---------Cccccc----cccc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGT---------GASSWT----GIKN 570 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGT---------gaap~~----~~~~ 570 (1429)
.+++.+.++++.+|+.. ++||+|||.+.. .+..+|..+.++|+|.|++.+.-.+. +...+. ..-.
T Consensus 151 ~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~ 229 (420)
T PRK08318 151 QVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGY 229 (420)
T ss_pred CCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccc
Confidence 46788999999999886 799999999875 57778888999999999987654331 000000 0011
Q ss_pred cCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCcccee
Q psy12805 571 AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT 649 (1429)
Q Consensus 571 ~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giat 649 (1429)
.|-+. .+++..+++.-...+. .+++||+.|||.|+.|+++.++.||++|+++|+.+. -
T Consensus 230 SG~a~~p~~l~~v~~~~~~~~~-~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~-~------------------- 288 (420)
T PRK08318 230 CGPAVKPIALNMVAEIARDPET-RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ-Y------------------- 288 (420)
T ss_pred cchhhhHHHHHHHHHHHhcccc-CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc-C-------------------
Confidence 23331 2355555543322211 268999999999999999999999999999997664 0
Q ss_pred cCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 650 QDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 650 qd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
+| .++..+.+||..+|.+.|+++++|++|+.
T Consensus 289 -gp--------------~ii~~I~~~L~~~l~~~g~~si~e~iG~~ 319 (420)
T PRK08318 289 -GF--------------RIVEDMISGLSHYMDEKGFASLEDMVGLA 319 (420)
T ss_pred -Cc--------------hhHHHHHHHHHHHHHHcCcchHHHHhccc
Confidence 11 35788999999999999999999998864
No 147
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=119.62 Aligned_cols=186 Identities=22% Similarity=0.189 Sum_probs=132.6
Q ss_pred cceEEEccCCCCCcCC------ccCccchHHH---HhhccCCCceEEEccccccccHHHHHHhCCCCc------cccccc
Q psy12805 1209 RGFIKYSRETAPYRPA------EKRLKDWDEI---YATQHVRKGLRIQAARCMECGVPFCQSSHGCPL------GNIIPK 1273 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~------~~rv~D~~el---~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~ 1273 (1429)
+.++.++||+.|..++ ......+++. ......+++++++|+|.++++++..+...|++| .++++.
T Consensus 95 yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 95 YDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred ccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 5568899999998864 1112333333 333333589999999999999999999999988 444444
Q ss_pred cchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEE-EeCCCeeEEEecEEEEeccccCchhhhhhccC
Q psy12805 1274 WNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMD-EVPNSEKIFKCDLVLLAMGFLGPERYIANELD 1350 (1429)
Q Consensus 1274 ~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v-~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lG 1350 (1429)
... .++.+.+.+.++.+| +..+..+..|+.. .+..... ........+++|++++++|.+| +..++++.+
T Consensus 175 ~~~----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p-~~~l~~~~~ 246 (415)
T COG0446 175 LLD----PEVAEELAELLEKYGVELLLGTKVVGVEGK---GNTLVVERVVGIDGEEIKADLVIIGPGERP-NVVLANDAL 246 (415)
T ss_pred hhh----HHHHHHHHHHHHHCCcEEEeCCceEEEEcc---cCcceeeEEEEeCCcEEEeeEEEEeecccc-cHHHHhhCc
Confidence 430 489999999999998 4567788888542 1111110 1223345799999999999995 466666665
Q ss_pred c-cccCCCCEEecCCCCccC-CCCEEEeCCCCCCC----------CcHHHHHHHHHHHHHHHHHH
Q psy12805 1351 L-TLDPRSNYSTVEKTYLTT-VPRVYAAGDCRRGQ----------SLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1351 L-eld~~G~I~VD~~~~~TS-vPgVFAAGD~a~g~----------~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
. .....|.|.||+ .++|+ .++|||+|||+..+ ..+..|..+++.++.++...
T Consensus 247 ~~~~~~~g~i~v~~-~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 247 PGLALAGGAVLVDE-RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred cceeccCCCEEEcc-ccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 2 455678899997 88997 99999999987532 34567888899998888743
No 148
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.86 E-value=2.5e-08 Score=122.31 Aligned_cols=182 Identities=19% Similarity=0.155 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.+.|+++|+.+|+.+|++- ++.....|..+.++|||+|.+.=..|..+... .....|.|.+.++.++.+...
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~ag---nv~t~~~a~~l~~aGad~v~vgig~gsictt~--~~~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAG---NVVTAEGTRDLVEAGADIVKVGVGPGAMCTTR--MMTGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEee---ccCCHHHHHHHHHcCCCEEEECccCCcccccc--cccCCchhHHHHHHHHHHHHH
Confidence 4577899999999999999886 44566678889999999998643323322221 122467899999999988765
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhcc---ccc----ccc----------------------
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC---TMM----RKC---------------------- 638 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc---~~~----r~c---------------------- 638 (1429)
.. .+++|++|||+++.|++||+++||++|.+|+.+.-+... .+. +.+
T Consensus 328 ~~----~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~ 403 (479)
T PRK07807 328 EL----GAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAF 403 (479)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchh
Confidence 44 489999999999999999999999999999955432211 000 000
Q ss_pred ---ccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCccccccC
Q psy12805 639 ---HLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702 (1429)
Q Consensus 639 ---~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsdll~~~~ 702 (1429)
.....|.||..+-+.+ ..+ ...+..++..+..+||.-|..+|.++|.||..+..++....
T Consensus 404 ~~~~~~~~~eGv~~~~~~~-~~~---~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~ 466 (479)
T PRK07807 404 DRARKALFEEGISTSRMYL-DPG---RPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSA 466 (479)
T ss_pred hhcccCCCCCCccceeeec-cCC---CCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECc
Confidence 0011222222221111 001 12377889999999999999999999999988888777654
No 149
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=98.82 E-value=1.2e-08 Score=111.69 Aligned_cols=126 Identities=26% Similarity=0.246 Sum_probs=93.0
Q ss_pred HHHHhhccCCCCCCCCCC--CCcc------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 12 EFRLLAEKCQLEVLGQHE--NTRK------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~r------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
...+.|-|+.|+....+. |||+ +++|||||...+.++++...+ .....+.+||..+
T Consensus 69 ~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~----------------~~~~~~~tDse~i 132 (220)
T cd00352 69 GVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEAR----------------GYRFEGESDSEVI 132 (220)
T ss_pred CEEEEEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHC----------------CCeecCCCHHHHH
Confidence 567899999999753222 5555 889999999999998888754 1223578999998
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-.+++-..-+. .+....+. .+...+|+.++++.|+ +.+-+.-|+.|+||.-|..++++.+++|||.
T Consensus 133 ~~~~~~~~~~~-----~~~~~~~~-------~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~ 200 (220)
T cd00352 133 LHLLERLGREG-----GLFEAVED-------ALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEP 200 (220)
T ss_pred HHHHHHHhccC-----CHHHHHHH-------HHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecH
Confidence 88665443322 12222222 3333899999999999 9999999999999995544438899999999
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
..+.
T Consensus 201 ~~~~ 204 (220)
T cd00352 201 KALL 204 (220)
T ss_pred HHHh
Confidence 9875
No 150
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.81 E-value=5.8e-08 Score=115.02 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CCeEEEEeccccC---hHHHHHHHHhcCCcEEEEecCCCCCC-ccccc-cccccC
Q psy12805 502 HDIYSIEDLAELIYDLKCANP----NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTG-ASSWT-GIKNAG 572 (1429)
Q Consensus 502 ~di~siedL~qlI~~Lk~~~~----~~pV~VKLv~e~G---vg~vA~~~akaGaD~I~IsG~~GGTg-aap~~-~~~~~G 572 (1429)
.+..+.+.+.+++..+|+... +.||.|||.+... +..+|+.+.++|+|.|++++.--... ..... ....-|
T Consensus 186 ~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg 265 (344)
T PRK05286 186 RDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGG 265 (344)
T ss_pred ccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCC
Confidence 345678889999999999875 3899999998754 55688888999999999998631100 00000 000112
Q ss_pred CC--h--HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccce
Q psy12805 573 LP--W--ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIA 648 (1429)
Q Consensus 573 iP--~--~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~gia 648 (1429)
++ . ..++..+.+.- ..++.+++|+++|||+|+.|+.+++..|||+|+++|+.+.-
T Consensus 266 ~SG~~~~~~~l~~v~~l~--~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~------------------- 324 (344)
T PRK05286 266 LSGRPLFERSTEVIRRLY--KELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE------------------- 324 (344)
T ss_pred cccHHHHHHHHHHHHHHH--HHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh-------------------
Confidence 22 1 12333333322 12344699999999999999999999999999999977651
Q ss_pred ecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcC
Q psy12805 649 TQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLG 684 (1429)
Q Consensus 649 tqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mG 684 (1429)
+| .+++.+.++|.++|.+.|
T Consensus 325 --gP--------------~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 325 --GP--------------GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred --Cc--------------hHHHHHHHHHHHHHHhcC
Confidence 12 457889999999998876
No 151
>KOG2495|consensus
Probab=98.78 E-value=4.4e-08 Score=115.24 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=128.4
Q ss_pred cceEEEccCCCCCcCC----------ccCccchHHHHhh-------ccCC----------CceEEEccccccccHHHHHH
Q psy12805 1209 RGFIKYSRETAPYRPA----------EKRLKDWDEIYAT-------QHVR----------KGLRIQAARCMECGVPFCQS 1261 (1429)
Q Consensus 1209 ~gf~kiAtGs~P~~p~----------~~rv~D~~el~~l-------~~~p----------k~lvVIGaGcIgcE~a~c~s 1261 (1429)
+-|+.+|+|..|.... ++.+.|..+++.. ...| -+.+|||||.-|+|++.=++
T Consensus 159 YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~ 238 (491)
T KOG2495|consen 159 YDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELA 238 (491)
T ss_pred ccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHH
Confidence 4568899998886541 2334455555211 1111 25899999999999887766
Q ss_pred hC------------CCCc--------cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEE
Q psy12805 1262 SH------------GCPL--------GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDE 1319 (1429)
Q Consensus 1262 ~~------------Gc~V--------~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~ 1319 (1429)
++ --.+ +.+|+.|+. .+.++.++.+.+.+ +..+..++.|... .+....
T Consensus 239 Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdk-----rl~~yae~~f~~~~I~~~~~t~Vk~V~~~-----~I~~~~ 308 (491)
T KOG2495|consen 239 DFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDK-----RLVEYAENQFVRDGIDLDTGTMVKKVTEK-----TIHAKT 308 (491)
T ss_pred HHHHHHHHHhhhcchhheEEEeeccchhHHHHHHH-----HHHHHHHHHhhhccceeecccEEEeecCc-----EEEEEc
Confidence 31 1111 456666655 88899999998888 4556667776331 222233
Q ss_pred eCCCeeEEEecEEEEeccccCchhhhhhccCccccCCC--CEEecCCCCc-cCCCCEEEeCCCCC---CCCcHHHHHHHH
Q psy12805 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRS--NYSTVEKTYL-TTVPRVYAAGDCRR---GQSLVVWAISEG 1393 (1429)
Q Consensus 1320 ~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G--~I~VD~~~~~-TSvPgVFAAGD~a~---g~~lvv~Ai~qG 1393 (1429)
-+|+.+++|.-+++||+|..|- .+.+.+.-..++.| .+.||+ .++ .+.++|||+|||+. ..+++..|.+||
T Consensus 309 ~~g~~~~iPYG~lVWatG~~~r--p~~k~lm~~i~e~~rr~L~vDE-~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG 385 (491)
T KOG2495|consen 309 KDGEIEEIPYGLLVWATGNGPR--PVIKDLMKQIDEQGRRGLAVDE-WLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQG 385 (491)
T ss_pred CCCceeeecceEEEecCCCCCc--hhhhhHhhcCCccCceeeeeec-eeeccCcCceEEeccccccccCccHHHHHHHHH
Confidence 3566678999999999997742 23444444444444 699998 555 68999999999983 456889999999
Q ss_pred HHHHHHHHHHHhCCCC
Q psy12805 1394 RQAAREIDSFLMGTST 1409 (1429)
Q Consensus 1394 r~AA~nI~~~L~g~~~ 1409 (1429)
..+|++++...+....
T Consensus 386 ~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 386 AYLAKNFNKMGKGGNL 401 (491)
T ss_pred HHHHHHHHHHhcccCC
Confidence 9999999988876544
No 152
>KOG1346|consensus
Probab=98.76 E-value=1.1e-08 Score=118.71 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=134.3
Q ss_pred cceecccccccce--EEEccCCCCCcCC---------c------cCccchHHHHhhccCCCceEEEccccccccHHHHHH
Q psy12805 1199 KKVDRSIDKTRGF--IKYSRETAPYRPA---------E------KRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQS 1261 (1429)
Q Consensus 1199 k~~~~~~~k~~gf--~kiAtGs~P~~p~---------~------~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s 1261 (1429)
+++....+.+.+| +.||||..|.... . .-+.|++.+.+.....+++.|||+|+++-|+++.+.
T Consensus 288 ~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~ 367 (659)
T KOG1346|consen 288 KKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLK 367 (659)
T ss_pred CeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHH
Confidence 4445555777888 5599999998751 1 124688888888877899999999999999998877
Q ss_pred h----CCCCcccccccc-ch-hhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEE
Q psy12805 1262 S----HGCPLGNIIPKW-ND-LIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVL 1333 (1429)
Q Consensus 1262 ~----~Gc~V~~iLp~~-d~-lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVL 1333 (1429)
+ .|.+|..+.+.- ++ -+...-+++.-.+.++..| +..+..+..+.. ..+.+.....+| .++..|+|+
T Consensus 368 rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~---~~~nl~lkL~dG--~~l~tD~vV 442 (659)
T KOG1346|consen 368 RKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK---CCKNLVLKLSDG--SELRTDLVV 442 (659)
T ss_pred HhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh---hccceEEEecCC--CeeeeeeEE
Confidence 3 577775444432 11 1222234444455555666 333444444422 233333333334 369999999
Q ss_pred EeccccCchhhhhhccCccccCC-CCEEecCCCCccCCCCEEEeCCCCCCC---------CcHHHHHHHHHHHHHHHHHH
Q psy12805 1334 LAMGFLGPERYIANELDLTLDPR-SNYSTVEKTYLTTVPRVYAAGDCRRGQ---------SLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1334 lAiG~~pp~~~Lle~lGLeld~~-G~I~VD~~~~~TSvPgVFAAGD~a~g~---------~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
+|+|.. |+++|++..|+++|+. |.+.||. .++ -..+||+|||++... ...-.|+-.||.|+.||...
T Consensus 443 vavG~e-PN~ela~~sgLeiD~~lGGfrvna-eL~-ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 443 VAVGEE-PNSELAEASGLEIDEKLGGFRVNA-ELK-ARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred EEecCC-CchhhcccccceeecccCcEEeeh-eee-cccceeeecchhhhhcccccceeccccccceeeceecccccccc
Confidence 999998 7889999999999854 6788886 333 357999999987532 33445888899999998644
Q ss_pred H
Q psy12805 1404 L 1404 (1429)
Q Consensus 1404 L 1404 (1429)
-
T Consensus 520 a 520 (659)
T KOG1346|consen 520 A 520 (659)
T ss_pred c
Confidence 3
No 153
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.73 E-value=1.3e-08 Score=120.70 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=143.6
Q ss_pred cccccccccCccceeccc-ccccce---------EEEccCCCCCcC---CccCccchHHHHhhccCCCceEEEccccccc
Q psy12805 1188 KDIEDVMGADKKKVDRSI-DKTRGF---------IKYSRETAPYRP---AEKRLKDWDEIYATQHVRKGLRIQAARCMEC 1254 (1429)
Q Consensus 1188 ~die~~i~~~~k~~~~~~-~k~~gf---------~kiAtGs~P~~p---~~~rv~D~~el~~l~~~pk~lvVIGaGcIgc 1254 (1429)
+.+++.|.+.+.+.+++. .+.+|| ++++|-..|..| ...|..|.+....... ++++|+|+-..
T Consensus 299 ~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaF----IqCVGSRD~~~ 374 (622)
T COG1148 299 LEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAF----IQCVGSRDFQV 374 (622)
T ss_pred EEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEE----EEEecCcCccc
Confidence 445566677776666655 344566 334444443333 3344455543333333 78999999888
Q ss_pred cHHHHHHhCCCC---------------ccccccccchhhccchHHHHHHHHHHhCCCCC-CcEEEEEEEeecCCCceEEE
Q psy12805 1255 GVPFCQSSHGCP---------------LGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA-GIKTVKVEWTKDATGRWKMD 1318 (1429)
Q Consensus 1255 E~a~c~s~~Gc~---------------V~~iLp~~d~lvf~~e~~~al~~~Le~~G~~~-gv~v~~Ve~~k~~~G~~~~v 1318 (1429)
+.+||++. .|- +...|-++|-++|++.+.++..+.-++.|+.+ .-++.+|.. .+++.+...
T Consensus 375 ~n~YCSrv-CCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRGrvaei~e--~p~~~l~V~ 451 (622)
T COG1148 375 GNPYCSRV-CCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRGRVAEIAE--FPKKKLIVR 451 (622)
T ss_pred CChhhHHH-HHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcCChHHhee--CCCCeeEEE
Confidence 99999872 221 14445667888899999999988877777322 223344433 233432221
Q ss_pred ---EeCCCeeEEEecEEEEeccccCch--hhhhhccCccccCCCCEEecC---CCCccCCCCEEEeCCCCCCCCcHHHHH
Q psy12805 1319 ---EVPNSEKIFKCDLVLLAMGFLGPE--RYIANELDLTLDPRSNYSTVE---KTYLTTVPRVYAAGDCRRGQSLVVWAI 1390 (1429)
Q Consensus 1319 ---~~~gse~~ieaDlVLlAiG~~pp~--~~Lle~lGLeld~~G~I~VD~---~~~~TSvPgVFAAGD~a~g~~lvv~Ai 1390 (1429)
.+.+...++++|+|++++|..|.. ..+.+.+||+.++.||++... ....|+.+|||.|| |+.+|..+..++
T Consensus 452 ~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG-~aqgPkdI~~si 530 (622)
T COG1148 452 VEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAG-AAQGPKDIADSI 530 (622)
T ss_pred EEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEee-cccCCccHHHHH
Confidence 244666789999999999998644 456888999999999998743 23568999999999 557899999999
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy12805 1391 SEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1391 ~qGr~AA~nI~~~L~g~ 1407 (1429)
+||..||.....++...
T Consensus 531 aqa~aAA~kA~~~l~~g 547 (622)
T COG1148 531 AQAKAAAAKAAQLLGRG 547 (622)
T ss_pred HHhHHHHHHHHHHhhcC
Confidence 99999998888887543
No 154
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.62 E-value=1.4e-07 Score=110.02 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=122.6
Q ss_pred ccccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecccCCCCCChhhhccccch
Q psy12805 379 EIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDL 458 (1429)
Q Consensus 379 ~i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv~~~~L~~a~~i 458 (1429)
.|.+|++-++|.+-| .-.|+.|+.+.|+.-..|-+...++.+. ..-..+++..+..||++.-+..
T Consensus 9 gi~~Pii~apM~~~s-----~~~la~avs~aGglG~l~~~~~~~~~l~-----~~i~~~~~~t~~pfgvn~~~~~----- 73 (307)
T TIGR03151 9 GIEYPIFQGGMAWVA-----TGSLAAAVSNAGGLGIIGAGNAPPDVVR-----KEIRKVKELTDKPFGVNIMLLS----- 73 (307)
T ss_pred CCCCCEEcCCCCCCC-----CHHHHHHHHhCCCcceeccccCCHHHHH-----HHHHHHHHhcCCCcEEeeecCC-----
Confidence 466899999997633 3578999999999877776666666541 1123345555667888753321
Q ss_pred hhhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHH
Q psy12805 459 QIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV 538 (1429)
Q Consensus 459 eIk~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~ 538 (1429)
| ...+.+..+.. .++.+|+-. +-.++ ++++++|+. +..|... ++.-.
T Consensus 74 ---------~---------~~~~~~~~~~~--~~v~~v~~~----~g~p~---~~i~~lk~~--g~~v~~~----v~s~~ 120 (307)
T TIGR03151 74 ---------P---------FVDELVDLVIE--EKVPVVTTG----AGNPG---KYIPRLKEN--GVKVIPV----VASVA 120 (307)
T ss_pred ---------C---------CHHHHHHHHHh--CCCCEEEEc----CCCcH---HHHHHHHHc--CCEEEEE----cCCHH
Confidence 1 01111111111 122222211 11122 467788775 4555544 34455
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
.|..+.++|+|.|++.|++.|.... ..+....+.++.+.+ +++||++|||.++.|+++++.+||+
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g--------~~~~~~ll~~v~~~~-------~iPviaaGGI~~~~~~~~al~~GA~ 185 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIG--------ELTTMALVPQVVDAV-------SIPVIAAGGIADGRGMAAAFALGAE 185 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCC--------CCcHHHHHHHHHHHh-------CCCEEEECCCCCHHHHHHHHHcCCC
Confidence 6788999999999999986542111 124555666666543 5899999999999999999999999
Q ss_pred hhhcchhHHHHhcc
Q psy12805 619 EIGLSTAPLITMGC 632 (1429)
Q Consensus 619 avg~gt~~L~algc 632 (1429)
+|.+||.++.+..|
T Consensus 186 gV~iGt~f~~t~Es 199 (307)
T TIGR03151 186 AVQMGTRFLCAKEC 199 (307)
T ss_pred EeecchHHhccccc
Confidence 99999988886654
No 155
>COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism]
Probab=98.62 E-value=5.4e-08 Score=111.63 Aligned_cols=111 Identities=31% Similarity=0.419 Sum_probs=84.9
Q ss_pred CCcccccCccchhhhhcccceEEEecc------cc----cccccccCCceEEEeCCCCCCCCCCccceeccccccccccC
Q psy12805 825 GDANDYVGKESFCAFLVRGVHVTLEGD------AN----DYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG 894 (1429)
Q Consensus 825 g~~~~~~g~~~~~g~~~~~~~i~l~G~------an----d~vgkgmsGG~ivv~p~~~~~~~~~~n~~~Gn~~~yg~tgG 894 (1429)
|||++|+|++|.+|. |.|.++ +| |.++-|+.||++.|+...++| +.--|+|+
T Consensus 109 GdAnDyvGkgmsgG~------IVV~~~~~~~~~~~~i~Gn~~lyGatgG~~fi~G~AGeR------------faVrnsG~ 170 (301)
T COG0070 109 GDANDYVGKGMSGGK------IVVRGPARFKAEANIIVGNTVLYGATGGELFIRGNAGER------------FGVRNSGA 170 (301)
T ss_pred eccCCcccCCCCCcE------EEEECCCcccccCCceecceEEEeccCcEEEEecCceee------------EEEEccCc
Confidence 567777777666666 888888 88 888888888998888444333 44467888
Q ss_pred ceeEecccCcceeeeecCceEEEcc-cCccccccccCceEEEeCCCCCcccccccccEEEE
Q psy12805 895 KAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYV 954 (1429)
Q Consensus 895 ~~~i~g~ag~Rfgvr~sg~~~vv~G-~g~~~~eyM~gG~ivvlG~~g~~~g~gM~gG~~yv 954 (1429)
.+.|.|. |.-.|..|.||.+||=| +|...|.=|+||.+-|+|..+..|-.+----++-+
T Consensus 171 ~~VVeG~-GD~~cEYMtGG~VvVLG~~G~nfgaGMsGG~aYV~~~~~~~f~~~~n~~~ve~ 230 (301)
T COG0070 171 TAVVEGI-GDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVEL 230 (301)
T ss_pred eEEEecc-CcceecccCCCEEEEeCCcchhhcCcccceEEEEecCccchhhcCccceEEEe
Confidence 8888888 88888889999998888 88778999999999999999865544444444444
No 156
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.61 E-value=8.6e-08 Score=112.95 Aligned_cols=206 Identities=22% Similarity=0.227 Sum_probs=113.3
Q ss_pred ccccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeecccCCCCCChhhhcccc--
Q psy12805 379 EIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHAD-- 456 (1429)
Q Consensus 379 ~i~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~asgrfGv~~~~L~~a~-- 456 (1429)
.|.+|++-++|.+ +| .-.|+.|..+.|+.=..|.++.+++.+. ..-..+++.....|||+.-......
T Consensus 9 gi~~PIiqapM~~--is---~~~LaaAVs~aGglG~l~~~~~~~~~l~-----~~i~~~~~~t~~pfgvnl~~~~~~~~~ 78 (330)
T PF03060_consen 9 GIKYPIIQAPMGG--IS---TPELAAAVSNAGGLGFLGAGGLTPEQLR-----EEIRKIRALTDKPFGVNLFLPPPDPAD 78 (330)
T ss_dssp T-SSSEEE---TT--TS---SHHHHHHHHHTTSBEEEECTTSSHHHHH-----HHHHHHHHH-SS-EEEEEETTSTTHHH
T ss_pred CCCcCEEcCCCCC--CC---hHHHHHHHHhCCCEeeccccccChHHHH-----HHHHHHHhhccccccccccccCcccch
Confidence 3678999999965 22 2268889999999877777788887642 1223345555567887743221110
Q ss_pred ------------chhhhcccCCCCCCCCCcccccchHHHHhcc-CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q psy12805 457 ------------DLQIKMAQGAKPGEGGELPGYKVTKDIASTR-HSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPN 523 (1429)
Q Consensus 457 ------------~ieIk~gQGAKpG~GG~lpg~KV~~~iA~~r-~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~ 523 (1429)
.+++.+..|-. ..+.+..+- +-.+.+.... + .+ ..+.++.+++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~--G-----~p--~~~~i~~l~~~--g 136 (330)
T PF03060_consen 79 EEDAWPKELGNAVLELCIEEGVP-----------FEEQLDVALEAKPDVVSFGF--G-----LP--PPEVIERLHAA--G 136 (330)
T ss_dssp H-HHHHHHTHHHHHHHHHHTT-S-----------HHHHHHHHHHS--SEEEEES--S-----SC---HHHHHHHHHT--T
T ss_pred hhhhhhhhhHHHHHHHHHHhCcc-----------cccccccccccceEEEEeec--c-----cc--hHHHHHHHHHc--C
Confidence 01121111111 111111111 1111111111 0 11 13456777765 5
Q ss_pred CeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCc
Q psy12805 524 ARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQI 603 (1429)
Q Consensus 524 ~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGI 603 (1429)
+.|+.+ ++--..|..+.++|+|+|++.|.+.|.+.. ...+ ++...+.++.+.+ +++||++|||
T Consensus 137 i~v~~~----v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-----~~~~-~~~~L~~~v~~~~-------~iPViaAGGI 199 (330)
T PF03060_consen 137 IKVIPQ----VTSVREARKAAKAGADAIVAQGPEAGGHRG-----FEVG-STFSLLPQVRDAV-------DIPVIAAGGI 199 (330)
T ss_dssp -EEEEE----ESSHHHHHHHHHTT-SEEEEE-TTSSEE--------SSG--HHHHHHHHHHH--------SS-EEEESS-
T ss_pred Cccccc----cCCHHHHHHhhhcCCCEEEEeccccCCCCC-----cccc-ceeeHHHHHhhhc-------CCcEEEecCc
Confidence 666665 344556788999999999999988664222 0111 4666677776665 5999999999
Q ss_pred ccHHHHHHHHHhcchhhhcchhHHHHhccc
Q psy12805 604 RTGFDVVVAALLGADEIGLSTAPLITMGCT 633 (1429)
Q Consensus 604 rtg~Dv~kAlaLGAdavg~gt~~L~algc~ 633 (1429)
.++++++.|++|||+.|.+||.++.+-.|.
T Consensus 200 ~dg~~iaaal~lGA~gV~~GTrFl~t~Es~ 229 (330)
T PF03060_consen 200 ADGRGIAAALALGADGVQMGTRFLATEESG 229 (330)
T ss_dssp -SHHHHHHHHHCT-SEEEESHHHHTSTTS-
T ss_pred CCHHHHHHHHHcCCCEeecCCeEEeccccc
Confidence 999999999999999999999999866654
No 157
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=98.60 E-value=1.1e-07 Score=107.79 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=89.7
Q ss_pred HHHHhhccCCCCCCCCCC--CCcc--------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 12 EFRLLAEKCQLEVLGQHE--NTRK--------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~r--------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
...+.|.|+.|+.+.++. |||+ +++|||||.-....++-...+- ....+.|||.
T Consensus 65 ~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g----------------~~~~~~tDSE 128 (252)
T cd00715 65 NIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEG----------------RIFQTTSDSE 128 (252)
T ss_pred cEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCC----------------CcccCCCHHH
Confidence 468999999999875422 5554 7899999955454443332110 1224689999
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
.+=..++....+ .++++....+...++|+.++++.|++.+.+.-|+.|+||.-|..+.|+.+++|||.
T Consensus 129 vi~~l~~~~~~~------------~~~~~al~~~~~~l~G~~a~~~~d~~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~ 196 (252)
T cd00715 129 VILHLIARSLAK------------DDLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGIRPLVLGKLEGDGYVVASES 196 (252)
T ss_pred HHHHHHHHhhcc------------CCHHHHHHHHHHhccCceEEEEEECCEEEEEECCCCCCCeEEEEeCCCeEEEEECH
Confidence 887766543322 23455555566777999999999999999999999999996666555889999999
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
..+.
T Consensus 197 ~al~ 200 (252)
T cd00715 197 CALD 200 (252)
T ss_pred HHhc
Confidence 7654
No 158
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.56 E-value=2.7e-07 Score=107.32 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHHHHHHHhcCCcEEEEecCCCCC-C-----ccccc-------cccc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGT-G-----ASSWT-------GIKN 570 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~vA~~~akaGaD~I~IsG~~GGT-g-----aap~~-------~~~~ 570 (1429)
.+++.+.++++.+|+.. ++||+||+.+.. .+..++..+.++|+|.|+++++-.+. + ..+.. ..-.
T Consensus 151 ~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~ 229 (299)
T cd02940 151 QDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY 229 (299)
T ss_pred cCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc
Confidence 57889999999999876 799999999865 56678888999999999988765331 0 00000 0011
Q ss_pred cCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 571 AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 571 ~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.|-+. .+++..+++.-... ..+++||++|||+|+.|+.+++++||++|+++|+.+.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~--~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAP--EPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 22222 23344444322221 2369999999999999999999999999999997665
No 159
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.54 E-value=8.6e-07 Score=103.00 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChH---HHHHHHHhc--CCcEEEEecCCCCC------Cccccc--cccccC
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKG--KAEHIVISGHDGGT------GASSWT--GIKNAG 572 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg---~vA~~~aka--GaD~I~IsG~~GGT------gaap~~--~~~~~G 572 (1429)
+++.+.++++.+|+.. ++||.|||.+..... .+|..+.++ |+|.|++.+.-+.. ...+.. ....-|
T Consensus 141 ~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 141 DFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 6788999999999986 799999999876543 345555567 99999976554210 111111 112234
Q ss_pred CC----hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 573 LP----WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 573 iP----~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+. -..+|..+++.-.. +..+++||++|||.|++|+++.+..||++|+++|+++.
T Consensus 220 ~SG~~i~~~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRL--LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred cCchhhHHHHHHHHHHHHHh--cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 43 33566555553222 22359999999999999999999999999999997764
No 160
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=103.70 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCC
Q psy12805 513 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 592 (1429)
Q Consensus 513 lI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR 592 (1429)
.|+.+++. +.+|..+.. ....|..+.++|+|.|+..|.+.|.+... ....+.+...+.++.+..
T Consensus 119 ~i~~~~~~--g~~v~~~v~----~~~~A~~~~~~G~d~vI~~g~eAGGH~g~----~~~~~~t~~Lv~ev~~~~------ 182 (336)
T COG2070 119 FVARLKAA--GIKVIHSVI----TVREALKAERAGADAVIAQGAEAGGHRGG----VDLEVSTFALVPEVVDAV------ 182 (336)
T ss_pred HHHHHHHc--CCeEEEEeC----CHHHHHHHHhCCCCEEEecCCcCCCcCCC----CCCCccHHHHHHHHHHHh------
Confidence 44555553 566776643 44568888999999999999865543221 122345566677777765
Q ss_pred Cc-eEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccc
Q psy12805 593 SR-VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCT 633 (1429)
Q Consensus 593 ~~-V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~ 633 (1429)
+ |+||++|||-++++++.|++|||++|.+||.++.+-.|.
T Consensus 183 -~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~ 223 (336)
T COG2070 183 -DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEAD 223 (336)
T ss_pred -cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccC
Confidence 4 899999999999999999999999999999999876653
No 161
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.44 E-value=1.3e-06 Score=103.37 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=88.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC------CCeEEEEeccccC---hHHHHHHHHhcCCcEEEEecCCCCCCccccccc----
Q psy12805 502 HDIYSIEDLAELIYDLKCANP------NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGASSWTGI---- 568 (1429)
Q Consensus 502 ~di~siedL~qlI~~Lk~~~~------~~pV~VKLv~e~G---vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~---- 568 (1429)
++..+.+.+.++++.+|+... ++||.|||.+... +..+|..+.++|+|.|++.+.--. ...+...
T Consensus 183 ~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~--~~~~~~~~~~~ 260 (335)
T TIGR01036 183 RDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVS--RSLVQGPKNSD 260 (335)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCc--cccccCccccC
Confidence 345577889999999987652 3899999999874 777888899999999999875321 1111000
Q ss_pred ccc---CCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 569 KNA---GLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 569 ~~~---GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
..- |-|. ..+|..+++.... +..+++||+.|||.|+.|+.+++++||++|+++|+.++
T Consensus 261 ~~GGlSG~~i~p~al~~v~~~~~~--~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 261 ETGGLSGKPLQDKSTEIIRRLYAE--LQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 011 1111 2455555554332 23469999999999999999999999999999998765
No 162
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.42 E-value=1.7e-06 Score=101.91 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCeEEEEeccccC---hHHHHHHHHhcCCcEEEEecCCCCCCcc--ccccccccCC
Q psy12805 503 DIYSIEDLAELIYDLKCANP----NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGAS--SWTGIKNAGL 573 (1429)
Q Consensus 503 di~siedL~qlI~~Lk~~~~----~~pV~VKLv~e~G---vg~vA~~~akaGaD~I~IsG~~GGTgaa--p~~~~~~~Gi 573 (1429)
...+++.+.++++.+|+... ++||.|||.+... +..+|..+.++|+|.|++++.-.+.-.. +......-|+
T Consensus 178 ~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~ 257 (327)
T cd04738 178 DLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGL 257 (327)
T ss_pred cccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCcc
Confidence 45678899999999998763 3899999988653 4557788899999999998753110000 0000000011
Q ss_pred --Ch--HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 574 --PW--ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 574 --P~--~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
|. ..++..+.+.-.. ++.+++|+++|||+|+.|+.+++..|||+|+++|+++.
T Consensus 258 sG~~~~~~~l~~v~~l~~~--~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 258 SGAPLKERSTEVLRELYKL--TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred CChhhhHHHHHHHHHHHHH--hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 11 1334444433221 33468999999999999999999999999999998775
No 163
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.40 E-value=1.3e-06 Score=101.95 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=122.9
Q ss_pred ccceeeCCCCCccchHHHHHHHHHHHHHhCCcEEecCCCCCccccccCCCcccccceeec-ccCCCCCChhhhccccchh
Q psy12805 381 VKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQV-ASGRFGVTSSYLAHADDLQ 459 (1429)
Q Consensus 381 ~~pf~i~aMS~GslS~ea~~aLA~aa~~~G~~~~tGEGg~~~~~~~~~~~~~~~~~I~Q~-asgrfGv~~~~L~~a~~ie 459 (1429)
.+|++-++|+..|-.. .||.|..+.|+.-..|-+...++... ..-..+++. .+..|||+.-.+...
T Consensus 2 ~yPIiqgpM~~vs~~~----~LaaAVS~AGgLG~la~~~~~~e~l~-----~~i~~~~~l~tdkPfGVnl~~~~~~---- 68 (320)
T cd04743 2 RYPIVQGPMTRVSDVA----EFAVAVAEGGGLPFIALALMRGEQVK-----ALLEETAELLGDKPWGVGILGFVDT---- 68 (320)
T ss_pred CCCEECCCcCCCCCcH----HHHHHHHhCCccccCCCCCCCHHHHH-----HHHHHHHHhccCCCeEEEEeccCCC----
Confidence 4799999998765422 57888888888766666666666631 111234443 456798875221100
Q ss_pred hhcccCCCCCCCCCcccccchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHH
Q psy12805 460 IKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV 539 (1429)
Q Consensus 460 Ik~gQGAKpG~GG~lpg~KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~v 539 (1429)
....+.+..+....|-.-.++- ..+.. ++.||+. +.+|+... .--..
T Consensus 69 -----------------~~~~~~l~vi~e~~v~~V~~~~------G~P~~----~~~lk~~--Gi~v~~~v----~s~~~ 115 (320)
T cd04743 69 -----------------ELRAAQLAVVRAIKPTFALIAG------GRPDQ----ARALEAI--GISTYLHV----PSPGL 115 (320)
T ss_pred -----------------cchHHHHHHHHhcCCcEEEEcC------CChHH----HHHHHHC--CCEEEEEe----CCHHH
Confidence 0011222222222222111211 12222 4667765 56666553 34455
Q ss_pred HHHHHhcCCcEEEEecCCCCCCccccccccccC-CChHHHHHHHHHHHHhcC---CCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAG-LPWELGVAETHQVLALNN---LRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~~~~~G-iP~~laL~ev~q~L~~~g---LR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
|..+.++|+|.|++.|++.|. |.| +++...+.++.+.|.... ...+++||++|||.+++.++.+++|
T Consensus 116 A~~a~~~GaD~vVaqG~EAGG---------H~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaL 186 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGG---------HVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSAL 186 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcC---------CCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHc
Confidence 788999999999999999764 333 445455666666553221 1136999999999999999999999
Q ss_pred cc--------hhhhcchhHHHHhccc
Q psy12805 616 GA--------DEIGLSTAPLITMGCT 633 (1429)
Q Consensus 616 GA--------davg~gt~~L~algc~ 633 (1429)
|| +.|.+||.++.+-.|.
T Consensus 187 GA~~~~~Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 187 AAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred CCcccccccccEEEEccHHhcchhhc
Confidence 99 7999999999877654
No 164
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.33 E-value=1.5e-06 Score=100.97 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=74.4
Q ss_pred CCCHHH-HHHHHHHHHHhCCCCeEEEEeccccC-hH--HHHHHHHhcCCcEEEEecCCCCC------Ccccccccccc--
Q psy12805 504 IYSIED-LAELIYDLKCANPNARISVKLVSEVG-VG--VVASGVAKGKAEHIVISGHDGGT------GASSWTGIKNA-- 571 (1429)
Q Consensus 504 i~sied-L~qlI~~Lk~~~~~~pV~VKLv~e~G-vg--~vA~~~akaGaD~I~IsG~~GGT------gaap~~~~~~~-- 571 (1429)
+...++ ..+++..+|+.. ++||.|||.++.. .. ..+..+.+.|+|.|++.+.-... ...+.......
T Consensus 143 ~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGl 221 (295)
T PF01180_consen 143 FGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGL 221 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEE
T ss_pred cccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCc
Confidence 444444 455666667664 8999999999653 32 34555567899999965542110 00011000111
Q ss_pred -CCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 572 -GLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 572 -GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
|-+. .++|..+++.-... +.+++||++|||.|++|+++++++||++|+++|+.+.
T Consensus 222 SG~~i~p~aL~~V~~~~~~~--~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 222 SGPAIRPIALRWVRELRKAL--GQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp EEGGGHHHHHHHHHHHHHHT--TTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred CchhhhhHHHHHHHHHHhcc--ccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 2222 35666666544332 3579999999999999999999999999999997765
No 165
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.31 E-value=4.2e-06 Score=96.62 Aligned_cols=121 Identities=21% Similarity=0.212 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccC---hHHHHHHHHhcCCcEEEEecCCCCCCcc-----ccccccccCCC--
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGAS-----SWTGIKNAGLP-- 574 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G---vg~vA~~~akaGaD~I~IsG~~GGTgaa-----p~~~~~~~GiP-- 574 (1429)
.+++.+.++++.+|+.. +.||+||+.+... ...++..+.++|+|+|++++...+.-.. +.....+.|+.
T Consensus 145 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~ 223 (289)
T cd02810 145 QDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA 223 (289)
T ss_pred cCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH
Confidence 46788999999999887 7999999997654 3456777899999999999774332100 00001122221
Q ss_pred h--HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 575 W--ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 575 ~--~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+ ..++..+.+.... ++.+++|+++|||+|+.|+.+++.+|||+|++||+.+.
T Consensus 224 ~~~~~~~~~v~~i~~~--~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 224 PIRPLALRWVARLAAR--LQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 1 1233333332221 22368999999999999999999999999999997665
No 166
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.29 E-value=8e-07 Score=95.52 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=83.8
Q ss_pred ceEEEccccccccHHHHHHhCCCCcccc--cc----------ccchh---hccchHHH----HHHHHHHhCC--CCCCcE
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPLGNI--IP----------KWNDL---IYHNNWSE----ALNQLLQTNN--FPAGIK 1301 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V~~i--Lp----------~~d~l---vf~~e~~~----al~~~Le~~G--~~~gv~ 1301 (1429)
+++|||||.-|+.++.-+...+.++..+ .+ .+... .....+.. .+.+.+...+ +..+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 4899999999999998888777777322 11 11000 00001110 1222223333 323455
Q ss_pred EEEEEEeecCCCc-----eEE-EEeCCCeeEEEecEEEEeccccCchh--------------------------------
Q psy12805 1302 TVKVEWTKDATGR-----WKM-DEVPNSEKIFKCDLVLLAMGFLGPER-------------------------------- 1343 (1429)
Q Consensus 1302 v~~Ve~~k~~~G~-----~~~-v~~~gse~~ieaDlVLlAiG~~pp~~-------------------------------- 1343 (1429)
+.++... .+. ... ....++..++.+|.||+|+|..|...
T Consensus 81 v~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~V 157 (201)
T PF07992_consen 81 VVSIDPE---SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAV 157 (201)
T ss_dssp EEEEEES---TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEE
T ss_pred ccccccc---ccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccc
Confidence 5666442 221 111 22456677999999999999874311
Q ss_pred ---hhh-hccCccccCCCCEEecCCCCccCCCCEEEeCCCCCC
Q psy12805 1344 ---YIA-NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG 1382 (1429)
Q Consensus 1344 ---~Ll-e~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g 1382 (1429)
.++ +.++++++++|++.||+ +++|+.|+|||+|||+..
T Consensus 158 vG~~~l~~~~~~~~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 158 VGTEFLAEKLGVELDENGFIKVDE-NLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp ESTTTSTHHTTSTBTTTSSBEEBT-TSBBSSTTEEE-GGGBEE
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccc
Confidence 111 56788999999999998 899999999999999864
No 167
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.27 E-value=4.1e-06 Score=100.91 Aligned_cols=85 Identities=24% Similarity=0.193 Sum_probs=58.4
Q ss_pred HHHHHHhcC-CcEEEEecCCCCCCccccccccccCCChHHHHHHHHH---HH-HhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 539 VASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ---VL-ALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 539 vA~~~akaG-aD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q---~L-~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
.|..+.+.| +|.|++. .+.|.+.. ..|+...++.+.+ .+ .+.+...+++|++.|||.|+++++.|+
T Consensus 168 eA~~A~~~g~aD~Ivvq-~EAGGH~g--------~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~ 238 (418)
T cd04742 168 QAELARRVPVADDITVE-ADSGGHTD--------NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAF 238 (418)
T ss_pred HHHHHHhCCCCCEEEEc-ccCCCCCC--------CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH
Confidence 466677888 6999997 44332211 1233333333333 22 223444579999999999999999999
Q ss_pred HhcchhhhcchhHHHHhcc
Q psy12805 614 LLGADEIGLSTAPLITMGC 632 (1429)
Q Consensus 614 aLGAdavg~gt~~L~algc 632 (1429)
+|||++|.+||.++.+-.|
T Consensus 239 alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 239 ALGADFIVTGSINQCTVEA 257 (418)
T ss_pred HcCCcEEeeccHHHhCccc
Confidence 9999999999998886553
No 168
>PLN02440 amidophosphoribosyltransferase
Probab=98.26 E-value=1.9e-06 Score=106.30 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHhhccCCCCCCC----CCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 12 EFRLLAEKCQLEVLG----QHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
..++.|-||+|+-.. .||+-. =.|+|||||.-.+..++.+..+. ..-.+.|||.
T Consensus 66 ~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g----------------~~f~s~sDsE 129 (479)
T PLN02440 66 DIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENG----------------SIFNTSSDTE 129 (479)
T ss_pred cEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcC----------------CcCCCCCHHH
Confidence 357899999999763 455321 15999999987665555444221 1114678998
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-+=..+.- |- .++++++....++.++|+.++++.|.+.+-|.-|++|+||.-|...+|+.+++|||.
T Consensus 130 vi~~li~~-----~~--------~~~~~~a~~~~~~~l~G~fa~vi~~~~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~ 196 (479)
T PLN02440 130 VLLHLIAI-----SK--------ARPFFSRIVDACEKLKGAYSMVFLTEDKLVAVRDPHGFRPLVMGRRSNGAVVFASET 196 (479)
T ss_pred HHHHHHHH-----hh--------hhhHHHHHHHHHHHhccceeeeEEECCEEEEEECCCCCCceEEEEeCCCEEEEEECc
Confidence 77654421 11 136788888888999999999988777788889999999996655667789999998
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
..++
T Consensus 197 ~al~ 200 (479)
T PLN02440 197 CALD 200 (479)
T ss_pred hHHh
Confidence 8775
No 169
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.23 E-value=2.2e-06 Score=105.87 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHhhccCCCCCCC----CCCCCcc-------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 13 FRLLAEKCQLEVLG----QHENTRK-------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~r-------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
.++.|-||+|+... .||+-.+ .|+|||||.-.+..++.+..+ +. .| .|.--.+.|||.
T Consensus 90 i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~-G~----~~------~~~~f~s~sDSE 158 (510)
T PRK07847 90 VAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDR-GL----IR------GRDPAGATTDTD 158 (510)
T ss_pred EEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhc-CC----cc------ccCCCCCCCHHH
Confidence 47899999998864 4553211 599999994334444444321 10 01 012235789999
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
.+-+.+.- |.++. ++-+....+++-++|..++++.|++.+-+.-|++|+||.-|.. .|+.+++|||.
T Consensus 159 VI~~Li~~-----~~~~~-------~~~eai~~~~~~l~G~yA~vi~d~~~L~aaRDp~GirPL~~g~-~~~~~~vASE~ 225 (510)
T PRK07847 159 LVTALLAH-----GAADS-------TLEQAALELLPTVRGAFCLVFMDEHTLYAARDPQGVRPLVLGR-LERGWVVASET 225 (510)
T ss_pred HHHHHHHH-----hccCC-------CHHHHHHHHHHHhhhheEEEEEECCEEEEEECCCCCCCcEEEE-ECCeEEEEech
Confidence 88774432 21111 2444455567778999999999999999999999999995554 45668999999
Q ss_pred ccccc
Q psy12805 162 GVYDT 166 (1429)
Q Consensus 162 g~~~~ 166 (1429)
-.++.
T Consensus 226 ~AL~~ 230 (510)
T PRK07847 226 AALDI 230 (510)
T ss_pred HHHhc
Confidence 77763
No 170
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.22 E-value=1e-05 Score=98.45 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=107.8
Q ss_pred eEEEccccccccHH-HHHH----hCCCCccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceE
Q psy12805 1244 LRIQAARCMECGVP-FCQS----SHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWK 1316 (1429)
Q Consensus 1244 lvVIGaGcIgcE~a-~c~s----~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~ 1316 (1429)
=.|++.+|||+|.+ ..++ .+|++|..+ |...+.+-..++.+.+.+.+++.| +..+.++.+++.. ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~v-p~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~---~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFEL-PTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE---GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEe-CCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe---CCEEE
Confidence 47799999999998 6554 579999432 333333333478888999998887 5678888888653 33333
Q ss_pred EEE-eCCCeeEEEecEEEEeccccCchhhh-----------------------------------hhccCccccCCCCEE
Q psy12805 1317 MDE-VPNSEKIFKCDLVLLAMGFLGPERYI-----------------------------------ANELDLTLDPRSNYS 1360 (1429)
Q Consensus 1317 ~v~-~~gse~~ieaDlVLlAiG~~pp~~~L-----------------------------------le~lGLeld~~G~I~ 1360 (1429)
.+. ..+....+++|.||+|+|+. ....| +...||++|++ ...
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf-~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p 371 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSF-FSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRP 371 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCc-ccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCc
Confidence 222 23445679999999999976 33333 13457777654 344
Q ss_pred ecCCCCccCCCCEEEeCCCCCCCCcHH------HHHHHHHHHHHHHHHHH
Q psy12805 1361 TVEKTYLTTVPRVYAAGDCRRGQSLVV------WAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1361 VD~~~~~TSvPgVFAAGD~a~g~~lvv------~Ai~qGr~AA~nI~~~L 1404 (1429)
+|. ..+|..++|||+|++..++..+. .|+..|-.||++|.+..
T Consensus 372 ~~~-~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 372 LDS-QGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred ccC-CCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 564 67788999999999999887774 48888888888887543
No 171
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.16 E-value=1e-05 Score=90.89 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc---ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV---GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 581 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~---Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~e 581 (1429)
++++.+.++++.+++. ++||+||+.+.. ..-.+|..+.++|+|.|+|+....|. +..-...+.+
T Consensus 118 ~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-----------~~a~~~~I~~ 184 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-----------PYADMDLLKI 184 (231)
T ss_pred CCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-----------chhhHHHHHH
Confidence 4678899999999954 699999999854 23368888999999999997543221 0012234455
Q ss_pred HHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 582 v~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
+.+.+ ..++||+.|||+|..|+.+++..|||+|.+|++.|
T Consensus 185 i~~~~------~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 185 LSEEF------NDKIIIGNNSIDDIESAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred HHHhc------CCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhc
Confidence 54433 13899999999999999999999999999999655
No 172
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=98.15 E-value=7.9e-06 Score=84.34 Aligned_cols=112 Identities=22% Similarity=0.218 Sum_probs=76.3
Q ss_pred HHHHHhhccCCCCCCCCCC--CCc-----c-cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 11 EEFRLLAEKCQLEVLGQHE--NTR-----K-CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~-----r-~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
.+..+.|-||.|+-..... ||| | +++|||+|..-.-.++-+.. ....-...+||..
T Consensus 12 ~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~----------------~g~~~~~~tDSEi 75 (133)
T PF13522_consen 12 GEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGE----------------KGHPFESDTDSEI 75 (133)
T ss_pred CCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHH----------------CCCcccCCCHHHH
Confidence 3467899999998877111 666 3 38999999877644443332 1122345889988
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEc--CCeEEEecccCCCCCCcEEEEeCCEEEEEee
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTD--GRYIGAILDRNGLRPSRFYVLKDNVMVMASE 160 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~d--g~~~ga~ldrnglrp~r~~~~~d~~~~~~se 160 (1429)
+=..+ .-|. ...++-++|..++++.| -+.+-..-|+.|.||. |+-.+++.+++|||
T Consensus 76 i~~li-----~~~g----------------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL-~~~~~~~~~~~ASE 133 (133)
T PF13522_consen 76 IAALI-----HRWG----------------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPL-YYGRDGDGYVFASE 133 (133)
T ss_pred HHHHH-----HHHH----------------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCE-EEEEcCCEEEEEeC
Confidence 76644 1111 33446789988888764 2444444999999999 77777999999999
No 173
>KOG2550|consensus
Probab=98.13 E-value=6e-06 Score=96.57 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
.+.|+.+|+.+|...|+.--| =....|+-+..+|||.+.|.=..|...-.. ..--.|-|..-|+..+.+.....
T Consensus 280 iemik~iK~~yP~l~ViaGNV---VT~~qa~nLI~aGaDgLrVGMGsGSiCiTq--evma~GrpQ~TAVy~va~~A~q~- 353 (503)
T KOG2550|consen 280 LEMIKYIKETYPDLQIIAGNV---VTKEQAANLIAAGADGLRVGMGSGSICITQ--KVMACGRPQGTAVYKVAEFANQF- 353 (503)
T ss_pred HHHHHHHHhhCCCceeeccce---eeHHHHHHHHHccCceeEeccccCceeeec--eeeeccCCcccchhhHHHHHHhc-
Confidence 457899999999988877633 234467778999999999753333322111 11246889888888888766444
Q ss_pred CCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCC----------
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG---------- 660 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g---------- 660 (1429)
.+++|+||||++..|++||+.|||+.|.+|. |+|- +-++|-..--.|...-++|.|
T Consensus 354 ---gvpviADGGiq~~Ghi~KAl~lGAstVMmG~--lLAg---------tTEapGeyf~~~g~rlKkyrGMGSl~AM~~~ 419 (503)
T KOG2550|consen 354 ---GVPCIADGGIQNVGHVVKALGLGASTVMMGG--LLAG---------TTEAPGEYFFRDGVRLKKYRGMGSLDAMESS 419 (503)
T ss_pred ---CCceeecCCcCccchhHhhhhcCchhheecc--eeee---------eeccCcceeeecCeeehhccCcchHHHHhhh
Confidence 4899999999999999999999999998886 3322 235565544444333333321
Q ss_pred -----------------------cHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCc
Q psy12805 661 -----------------------KPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTD 696 (1429)
Q Consensus 661 -----------------------~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrsd 696 (1429)
..-.+.+|+..+..+|+.-+.-+|.++++++..+.+
T Consensus 420 s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~ 478 (503)
T KOG2550|consen 420 SQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMY 478 (503)
T ss_pred hhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence 013477888999999999999999999999865543
No 174
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.09 E-value=6.7e-06 Score=100.61 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=84.7
Q ss_pred HHHHhhccCCCCCCC----CCCCCc-----ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 12 EFRLLAEKCQLEVLG----QHENTR-----KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~-----r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
..++.|.||+|+-.. .||+.. =.++|||+|..-+-.++....+- ..-.+.|||..
T Consensus 66 ~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g----------------~~f~~~sDSEv 129 (442)
T TIGR01134 66 NVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEG----------------RIFNTTSDSEV 129 (442)
T ss_pred cEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcC----------------CcCCCCCHHHH
Confidence 357899999999863 455321 15899999965554444443211 11246799998
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeecc
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVG 162 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g 162 (1429)
+-+.+.-.. |++ . ++.+-....++..+|..++++.|++.+-+.-|++|+||.=|. -.++.+++|||..
T Consensus 130 i~~li~~~~---~~~-~-------~~~~ai~~~~~~l~G~falvi~~~~~L~a~RD~~G~rPL~~g-~~~~~~~~ASE~~ 197 (442)
T TIGR01134 130 LLHLLARER---LEE-D-------DLFEAIARVLKRVRGAYALVIMIGDGLIAVRDPHGIRPLVLG-KRGDGYVVASESC 197 (442)
T ss_pred HHHHHHHhh---ccc-C-------CHHHHHHHHHHHhCccceEEEEECCEEEEEECCCCCCCcEEE-EeCCEEEEEeCch
Confidence 877554311 211 1 223333334455699999999999999999999999999555 4566799999998
Q ss_pred ccc
Q psy12805 163 VYD 165 (1429)
Q Consensus 163 ~~~ 165 (1429)
.++
T Consensus 198 al~ 200 (442)
T TIGR01134 198 ALD 200 (442)
T ss_pred Hhc
Confidence 776
No 175
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.03 E-value=4.8e-05 Score=92.44 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHHhcC-CcEEEEecCCCCCCccccccccccCCChHHHHHHHH---HHH-HhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 540 ASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH---QVL-ALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 540 A~~~akaG-aD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~---q~L-~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
|..+.+.| +|.|++. .+.|.+. .. .|+...++++. +.+ ...+...+|+|++.|||.|+++++.|++
T Consensus 174 A~~a~~~g~aD~Ivve-~EAGGHt------g~--~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla 244 (444)
T TIGR02814 174 AELARRVPVADDICVE-ADSGGHT------DN--RPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM 244 (444)
T ss_pred HHHHHhCCCCcEEEEe-ccCCCCC------CC--CcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH
Confidence 45567777 5999886 4433221 11 24444444443 222 2233344689999999999999999999
Q ss_pred hcchhhhcchhHHHHhcc
Q psy12805 615 LGADEIGLSTAPLITMGC 632 (1429)
Q Consensus 615 LGAdavg~gt~~L~algc 632 (1429)
|||+.|.+||.++.+-.|
T Consensus 245 LGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 245 LGADFIVTGSVNQCTVEA 262 (444)
T ss_pred cCCcEEEeccHHHhCccc
Confidence 999999999988886543
No 176
>KOG1436|consensus
Probab=98.01 E-value=7e-05 Score=85.47 Aligned_cols=174 Identities=18% Similarity=0.252 Sum_probs=115.1
Q ss_pred HHHhccCCCCc-----cccccCC--CCCCCCCHHHHHHHHHHHHHh------CCCCeEEEEecccc---ChHHHHHHHHh
Q psy12805 482 DIASTRHSVPG-----VGLISPP--PHHDIYSIEDLAELIYDLKCA------NPNARISVKLVSEV---GVGVVASGVAK 545 (1429)
Q Consensus 482 ~iA~~r~~~pg-----~~LisP~--~h~di~siedL~qlI~~Lk~~------~~~~pV~VKLv~e~---Gvg~vA~~~ak 545 (1429)
.+..+|.+.|- .++-||+ +-++...-.||.+++..+... .-+.||.||+.+.. ...++|..+.|
T Consensus 198 y~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk 277 (398)
T KOG1436|consen 198 YVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKK 277 (398)
T ss_pred HHHHhhhcccccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHH
Confidence 33456655332 2344554 335566667777777665332 11348999998754 34457777778
Q ss_pred cCCcEEEEecCCCCCCcccccccc-----c----cCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 546 GKAEHIVISGHDGGTGASSWTGIK-----N----AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 546 aGaD~I~IsG~~GGTgaap~~~~~-----~----~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
.+.|.+++++..- ..|..+.. . -|-|. .+++..+.+.... +|.+|+||.+|||.+|.|+.+-+.+
T Consensus 278 ~~idg~IvsnttV---srp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~l--t~g~IpiIG~GGV~SG~DA~Ekira 352 (398)
T KOG1436|consen 278 LNIDGLIVSNTTV---SRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTL--TRGKIPIIGCGGVSSGKDAYEKIRA 352 (398)
T ss_pred hCccceeecCcee---ecCccccccccccccCCCCCCccchhHHHHHHHHHHh--ccCCCceEeecCccccHhHHHHHhc
Confidence 8999998886521 11111110 0 12333 3444444443322 5789999999999999999999999
Q ss_pred cchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 616 GADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 616 GAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
||+.|++.|++-. .| ...+..+..||..+|...|+.++.|+||..
T Consensus 353 GASlvQlyTal~y------------------------------eG-----p~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 353 GASLVQLYTALVY------------------------------EG-----PAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred CchHHHHHHHHhh------------------------------cC-----chhHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 9999998884332 11 124788999999999999999999999863
No 177
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.00 E-value=1.2e-05 Score=99.48 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=84.1
Q ss_pred HHHhhccCCCCCC----CCCCCCcc------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 13 FRLLAEKCQLEVL----GQHENTRK------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 13 ~~~~~~~~~~~~~----~~~~~~~r------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
.++.|-||+|+.. +.||+..+ .|+|||||---+-.++.+.++- ..-...|||.-
T Consensus 100 i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G----------------~~f~s~sDtEV 163 (500)
T PRK07349 100 LAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARG----------------CELTTTTDSEM 163 (500)
T ss_pred EEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCC----------------CcCCCCCHHHH
Confidence 4789999999875 35665322 5999999965554444443211 12256889987
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEe----CCEEEEE
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLK----DNVMVMA 158 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~----d~~~~~~ 158 (1429)
+-+.+.-.. .+ .+ +|-+-....++-++|..++++.+++.+-|.-|++|+||. |+-.. ++.+++|
T Consensus 164 i~~li~~~~----~~--~~-----~~~eai~~~~~~l~G~ya~vi~~~~~l~aaRDp~GiRPL-~~G~~~~~~~~~~~~A 231 (500)
T PRK07349 164 IAFAIAQAV----DA--GK-----DWLEAAISAFQRCQGAFSLVIGTPEGLMGVRDPNGIRPL-VIGTLGEGGPGRYVLA 231 (500)
T ss_pred HHHHHHHHH----hc--CC-----CHHHHHHHHHHHhhhhEEEEEEeCCEEEEEECCCCCCCe-EEEecccCCCCeEEEE
Confidence 766443211 11 11 122233345677899999999999999999999999998 55443 4578999
Q ss_pred eeccccc
Q psy12805 159 SEVGVYD 165 (1429)
Q Consensus 159 se~g~~~ 165 (1429)
||.=.++
T Consensus 232 SE~~Al~ 238 (500)
T PRK07349 232 SETCALD 238 (500)
T ss_pred eccchhh
Confidence 9988774
No 178
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.00 E-value=1.5e-05 Score=98.00 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHhhccCCCCCC----CCCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 12 EFRLLAEKCQLEVL----GQHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
..++-|-||+|+-. +.||+-+ =.|+|||||.-.+-.++.+.++-. .-...|||.
T Consensus 76 ~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~----------------~f~s~sDtE 139 (475)
T PRK07631 76 KAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGS----------------IFQTTSDTE 139 (475)
T ss_pred CEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCC----------------cCCCCCHHH
Confidence 35678999999986 4566421 258999999866655554443211 124577887
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-+-..+.- |.+ .+ |-+-...+|+-++|..++++-|.+.+-+.-|++|+||. |+-..|+.+++|||.
T Consensus 140 Vi~~Li~~-----~~~-~~-------~~eai~~~~~~l~G~yalvi~~~~~l~aaRDp~GirPL-~~G~~~~~~~~ASE~ 205 (475)
T PRK07631 140 VLAHLIKR-----SGA-PT-------LKEQIKNALSMLKGAYAFLLMTETELYVALDPNGLRPL-SIGRLGDAYVVASET 205 (475)
T ss_pred HHHHHHHH-----HcC-CC-------HHHHHHHHHHhCCCCceeeEEeCCEEEEEECCCCCCCE-EEEEeCCEEEEEeCh
Confidence 66553321 211 11 23333345566899999999888878888899999999 665567789999999
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
-.++
T Consensus 206 ~Al~ 209 (475)
T PRK07631 206 CAFD 209 (475)
T ss_pred HHHh
Confidence 8774
No 179
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=97.98 E-value=1.8e-05 Score=97.70 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=84.4
Q ss_pred HHHhhccCCCCCCC----CCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 13 FRLLAEKCQLEVLG----QHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
..+.|.||+|+-.. .||+-. -.|+|||||--.+-.++.+.++- ..-.+.|||.-
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G----------------~~f~s~sDSEv 151 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRG----------------AIFQSTSDTEV 151 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCC----------------CcCCCCCHHHH
Confidence 46799999999843 455421 37899999987766665554321 11256789887
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeecc
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVG 162 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g 162 (1429)
+=..+.- |.+ . ++.+.....++-++|+.++++-+.+.+-|.-|++|+||. ||-..++.+++|||.-
T Consensus 152 i~~Li~~-----~~~-~-------~~~eai~~~~~~L~G~ya~vil~~~~l~a~RD~~GirPL-~~g~~~~~~~~ASE~~ 217 (479)
T PRK09123 152 ILHLIAR-----SRK-A-------SFLDRFIDALRQVEGAYSLVALTNTKLIGARDPLGIRPL-VLGELDGSPILASETC 217 (479)
T ss_pred HHHHHHH-----Hcc-C-------CHHHHHHHHHHHhhcceeEEEEECCEEEEEECCCCCCce-EEEEECCEEEEEECch
Confidence 6553321 111 1 133333445666799989998888889999999999999 5555667899999998
Q ss_pred ccc
Q psy12805 163 VYD 165 (1429)
Q Consensus 163 ~~~ 165 (1429)
.++
T Consensus 218 Al~ 220 (479)
T PRK09123 218 ALD 220 (479)
T ss_pred HHh
Confidence 875
No 180
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=97.95 E-value=1.7e-05 Score=97.51 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=87.9
Q ss_pred HHHHhhccCCCCCCC----CCCCCccc------ccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 12 EFRLLAEKCQLEVLG----QHENTRKC------VAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~r~------~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
..++-|-||+|+-.. .||++++. |+|||||.-.+-.++.+..+-. .-...|||.
T Consensus 83 ~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~----------------~F~s~sDtE 146 (474)
T PRK06388 83 IVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGY----------------IFQSDSDTE 146 (474)
T ss_pred cEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCC----------------cccCCCHHH
Confidence 357899999999854 67766443 8999999988888877764321 124578888
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-+=+.+.-.. ..| . +-+-....|+-++|--++++.+.+.+-+.-|++|+||. |+-..|+.+++|||.
T Consensus 147 Vi~~li~~~~-~~~----~-------~~eai~~~~~~l~G~ya~vi~~~~~l~a~RDp~GiRPL-~~G~~~~~~~~ASE~ 213 (474)
T PRK06388 147 VMLAELSRNI-SKY----G-------LKEGFERSMERLRGAYACALMINDRLYAIRDPNGIRPL-VLGKNFDGYIIASES 213 (474)
T ss_pred HHHHHHHHHH-hcC----C-------HHHHHHHHHHhccCceeEEEEECCEEEEEECCCCCCce-EEEecCCEEEEEECh
Confidence 7665332111 011 1 22222345677899999999888889999999999999 665566778999997
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
-.++
T Consensus 214 ~Al~ 217 (474)
T PRK06388 214 CAID 217 (474)
T ss_pred HHHH
Confidence 6654
No 181
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=97.91 E-value=2.1e-05 Score=96.49 Aligned_cols=125 Identities=17% Similarity=0.140 Sum_probs=86.3
Q ss_pred HHHHhhccCCCCCC----CCCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchH
Q psy12805 12 EFRLLAEKCQLEVL----GQHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSG 81 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~ 81 (1429)
..++.|.||+|+-. +.||+.. =.|+|||||--..-.++.+..+-. .-...|||.
T Consensus 66 ~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~----------------~f~s~sDtE 129 (445)
T PRK08525 66 EIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGA----------------IFQTNMDTE 129 (445)
T ss_pred cEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCC----------------cCCCCCHHH
Confidence 36789999999954 4678643 268999999766656655543211 114467887
Q ss_pred HHHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 82 AADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 82 ~~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
.+=..+.- |.+ . ++.+-....++-+||+.++++-|.+.+-+.-|+.|+||.=|...+|+.+++|||.
T Consensus 130 vi~~l~~~-----~~~-~-------~~~ea~~~~~~~L~G~fa~vi~~~~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~ 196 (445)
T PRK08525 130 NLIHLIAR-----SKK-E-------SLKDRIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRPLSLGRLKDGGYIVASET 196 (445)
T ss_pred HHHHHHHH-----HcC-C-------CHHHHHHHHHHhcCCceEEEEEeCCEEEEEECCCCCCCeEEEEecCCEEEEEECH
Confidence 66443321 211 1 2333334456788999999999999999999999999994434456789999998
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
-.++
T Consensus 197 ~al~ 200 (445)
T PRK08525 197 CAFD 200 (445)
T ss_pred HHhh
Confidence 8774
No 182
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=97.84 E-value=1.9e-05 Score=98.04 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=84.2
Q ss_pred HHHHhhccCCCCCC----CCCCCCcc-----cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 12 EFRLLAEKCQLEVL----GQHENTRK-----CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~r-----~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
..++.|-||+|.-. +.||+-.+ .|+|||||.-.+--++.+..+.+ . .+ .+.|||.-
T Consensus 66 ~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~-------------~-~f-~s~sDsEv 130 (501)
T PRK09246 66 NMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDR-------------R-HI-NTTSDSEV 130 (501)
T ss_pred CEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCC-------------C-ee-ecCCHHHH
Confidence 35789999999875 35554212 78999999876655444432100 0 11 56899987
Q ss_pred HHHHHHhhCccccccC-CCCCHHHHHHHHHHhhccCCCCcceEEE-EEcCCeEEEecccCCCCCCcEEEEe---CCEEEE
Q psy12805 83 ADCAVMTMVPEAWQND-GTMPDEKRDFYNWAACAMEPWDGPALLT-FTDGRYIGAILDRNGLRPSRFYVLK---DNVMVM 157 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~-~~~~~~~~~~y~~~~~~~epwdgpa~~~-~~dg~~~ga~ldrnglrp~r~~~~~---d~~~~~ 157 (1429)
+=..+. .|-.. ....+...++.+=....|+-++|..+++ +++++.+-|.-|++|+||.=|..++ |+.+++
T Consensus 131 i~~li~-----~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ 205 (501)
T PRK09246 131 LLNVFA-----HELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMV 205 (501)
T ss_pred HHHHHH-----HHHHhccccccCccCHHHHHHHHHHhcccceeeEEEecCCcEEEEECCCCCCCeEEEeecCCCCCEEEE
Confidence 655331 11100 0000011234444455778889999987 7878789999999999999443332 457999
Q ss_pred Eeeccccc
Q psy12805 158 ASEVGVYD 165 (1429)
Q Consensus 158 ~se~g~~~ 165 (1429)
|||.-.++
T Consensus 206 ASE~~Al~ 213 (501)
T PRK09246 206 ASESVALD 213 (501)
T ss_pred EECHHHHH
Confidence 99996654
No 183
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=97.81 E-value=5.8e-05 Score=93.01 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=84.1
Q ss_pred HHHhhccCCCCCCC----CCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 13 FRLLAEKCQLEVLG----QHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
.++.|-||+|+-.. .||+.. -.++|||+|--.+..++.+.++- ..-...|||.-
T Consensus 77 ~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G----------------~~f~s~sDtEv 140 (471)
T PRK06781 77 SAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEG----------------SIFQTSSDTEV 140 (471)
T ss_pred EEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCC----------------CcCCCCCHHHH
Confidence 45789999999864 466421 37899999986665555443211 11245788887
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeecc
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVG 162 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g 162 (1429)
+=..+.- |.+ . +|-+-....++-++|.-++++-|.+.+-+.-|++|+||. |+-..|+.+++|||.-
T Consensus 141 I~~Li~~-----~~~-~-------~~~eai~~~~~~l~G~ya~vi~~~~~l~aaRD~~GirPL-~~g~~~~~~~~ASE~~ 206 (471)
T PRK06781 141 LLHLIKR-----STK-D-------SLIESVKEALNKVKGAFAYLLLTGNEMIVALDPNGFRPL-SIGKMGDAYVVASETC 206 (471)
T ss_pred HHHHHHH-----HcC-C-------CHHHHHHHHHHhCCCcEEEEEEECCEEEEEECCCCCCCe-EEEEECCEEEEEECch
Confidence 6654421 211 1 233333445666799999999888878888899999999 7666677899999987
Q ss_pred ccc
Q psy12805 163 VYD 165 (1429)
Q Consensus 163 ~~~ 165 (1429)
.++
T Consensus 207 Al~ 209 (471)
T PRK06781 207 AFD 209 (471)
T ss_pred Hhh
Confidence 765
No 184
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.70 E-value=6.2e-05 Score=92.08 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=83.7
Q ss_pred HHHHhhccCCCCCC--CCCCCCcc------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 12 EFRLLAEKCQLEVL--GQHENTRK------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~r------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
..++-|.||+|+-. +.||||.+ .|+|||||.-.+-.++.+.++-.. -...|||.-+
T Consensus 67 ~~~IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~----------------F~s~sDtEVI 130 (442)
T PRK08341 67 NLAIGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVK----------------FRSSVDTELI 130 (442)
T ss_pred CEEEEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCc----------------cCCCCHHHHH
Confidence 46789999999863 35665543 389999998777666555432211 1346888765
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeeccc
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVGV 163 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~ 163 (1429)
-+.+. ..+.+. .++.+.....|+..||..++++.+.+.+-+.-|+.|+||. |+-.+|+ +++|||.-.
T Consensus 131 ~~li~----~~~~~~-------~~~~~ai~~~~~~l~G~yal~i~~~~~l~a~RD~~GirPL-~~G~~~~-~~~ASE~~A 197 (442)
T PRK08341 131 GISFL----WHYSET-------GDEFEAMREVFNEVKGAYSVAILFDGKIIVARDPVGFRPL-SYGEGDG-HYFASEDSA 197 (442)
T ss_pred HHHHH----HHHHhc-------CCHHHHHHHHHHhccCceEEEEEECCEEEEEEcCCCceEE-EEEECCE-EEEEeCcHH
Confidence 43211 111110 1233455556788999999999888889999999999998 5544444 789999776
Q ss_pred cc
Q psy12805 164 YD 165 (1429)
Q Consensus 164 ~~ 165 (1429)
++
T Consensus 198 l~ 199 (442)
T PRK08341 198 LR 199 (442)
T ss_pred HH
Confidence 64
No 185
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.69 E-value=0.00022 Score=83.93 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHhCC-CCeEEEEecccc----ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC--hHH
Q psy12805 505 YSIEDLAELIYDLKCANP-NARISVKLVSEV----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WEL 577 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~-~~pV~VKLv~e~----Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP--~~l 577 (1429)
..++-+.+++..+|+..+ +.||+||+-... ..-.++..+.++|+|.|+|.++... ....|-+ | .
T Consensus 114 ~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~--------~~y~g~~~~~-~ 184 (312)
T PRK10550 114 KDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--------DGYRAEHINW-Q 184 (312)
T ss_pred cCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc--------cCCCCCcccH-H
Confidence 356778999999999875 589999986532 1234677788999999999875321 1122322 3 3
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH-hcchhhhcchhHHH
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLI 628 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla-LGAdavg~gt~~L~ 628 (1429)
.+.++.+.+ +++|++.|+|.|+.|+..++. -|||.|.+|+++|-
T Consensus 185 ~i~~ik~~~-------~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 185 AIGEIRQRL-------TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHHhhc-------CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 445555443 589999999999999999884 68999999997553
No 186
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.68 E-value=0.0002 Score=80.96 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc--ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 582 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~--Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev 582 (1429)
.+++.+.++++.+|+. +.||+||+.... ..-.+|..+.++|+|.|.++....+. ...| ..+.++
T Consensus 123 ~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~-----------~ad~-~~I~~i 188 (233)
T cd02911 123 KDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGN-----------HADL-KKIRDI 188 (233)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCC-----------CCcH-HHHHHh
Confidence 4678899999999984 799999998654 34567788999999999886543220 1122 222222
Q ss_pred HHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 583 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 583 ~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
. .+++||+.|||.|..|+.+++..|||+|.+|++
T Consensus 189 ~---------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 189 S---------TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred c---------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 1 358999999999999999999999999999985
No 187
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.64 E-value=0.00024 Score=83.63 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccc---c--ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSE---V--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 580 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e---~--Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ 580 (1429)
.++-+.++++.+|+.. +.||+||+... . ....++..+.++|+|.|+|.++.... ...|.+....+.
T Consensus 115 ~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~--------~~~~~~~~~~i~ 185 (319)
T TIGR00737 115 DPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--------GYSGEANWDIIA 185 (319)
T ss_pred CHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc--------cCCCchhHHHHH
Confidence 4577889999999876 59999998531 1 23356777889999999998753211 112223333344
Q ss_pred HHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH-HhcchhhhcchhHHH
Q psy12805 581 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA-LLGADEIGLSTAPLI 628 (1429)
Q Consensus 581 ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl-aLGAdavg~gt~~L~ 628 (1429)
++.+.+ +++|++.|||.|+.|+.+++ ..|||+|.+|+++|.
T Consensus 186 ~i~~~~-------~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 186 RVKQAV-------RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHcC-------CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 444432 58999999999999999999 688999999997653
No 188
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.63 E-value=9.4e-05 Score=91.30 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=81.5
Q ss_pred HHHhhccCCCCCCC----CCCCCc------ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 13 FRLLAEKCQLEVLG----QHENTR------KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~------r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
..+.|-||+|.-+. .||+.. =.++|||+|.-.+..++.+..+ + ..-.+.|||.-
T Consensus 82 ~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~-g---------------~~f~s~sDSEv 145 (469)
T PRK05793 82 SAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDG-G---------------RIFQTSIDSEV 145 (469)
T ss_pred EEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhc-C---------------CcccCCCHHHH
Confidence 46799999998753 566422 1489999997655555444321 1 11245789987
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeecc
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVG 162 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g 162 (1429)
+=..+.-.. + ..+ -+-....++-++|..++++.+++.+-|.-|++|+||. |+-..|+-+++|||.-
T Consensus 146 i~~li~~~~-----~-~~~-------~~ai~~~~~~l~G~ya~vi~~~~~l~a~RD~~GirPL-~~g~~~~~~~vASE~~ 211 (469)
T PRK05793 146 ILNLIARSA-----K-KGL-------EKALVDAIQAIKGSYALVILTEDKLIGVRDPHGIRPL-CLGKLGDDYILSSESC 211 (469)
T ss_pred HHHHHHHHc-----c-CCH-------HHHHHHHHHHhhhhceEEEEECCEEEEEECCCCCCCc-EEEEECCEEEEEEChH
Confidence 765442211 1 112 2222334455688889999888899999999999999 6655667789999987
Q ss_pred ccc
Q psy12805 163 VYD 165 (1429)
Q Consensus 163 ~~~ 165 (1429)
.++
T Consensus 212 al~ 214 (469)
T PRK05793 212 ALD 214 (469)
T ss_pred HHh
Confidence 765
No 189
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=97.56 E-value=0.00022 Score=88.20 Aligned_cols=123 Identities=18% Similarity=0.135 Sum_probs=83.9
Q ss_pred HHHhhccCCCCCC----CCCCCCcc------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 13 FRLLAEKCQLEVL----GQHENTRK------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 13 ~~~~~~~~~~~~~----~~~~~~~r------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
.++.|-||+|+-. +.||+..+ .|+|||+|---.-.++.+..+- ..-...|||.-
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G----------------~~f~s~sDtEV 141 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQG----------------AIFHSSSDTEI 141 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCC----------------CCCCCCCHHHH
Confidence 5788999999964 46665221 3899999965555555544321 11245788887
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEE-EeCCEEEEEeec
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYV-LKDNVMVMASEV 161 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~-~~d~~~~~~se~ 161 (1429)
+=+.+.- |. .. +|-+.....++-.+|.-++++.+.+.+.+.-|++|+||. |+- .+|+.+++|||.
T Consensus 142 I~~Li~~-----~~-~~-------~~~eai~~~~~~l~G~ya~~i~~~~~l~a~RDp~GirPL-~~G~~~~~~~~~ASE~ 207 (484)
T PRK07272 142 LMHLIRR-----SH-NP-------TFMGKLKEALNTVKGGFAYLLLTEDKLIAALDPNGFRPL-SIGKMKNGAYVVASET 207 (484)
T ss_pred HHHHHHH-----Hc-CC-------CHHHHHHHHHHHccCceeEEEEECCEEEEEECCCCCCcE-EEEEecCCEEEEEECH
Confidence 6553321 11 11 344455556667799999999998999999999999999 554 347789999998
Q ss_pred cccc
Q psy12805 162 GVYD 165 (1429)
Q Consensus 162 g~~~ 165 (1429)
-.++
T Consensus 208 ~Al~ 211 (484)
T PRK07272 208 CAFD 211 (484)
T ss_pred HHHh
Confidence 7664
No 190
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.56 E-value=0.00038 Score=82.17 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-----ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-----Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
.+++-+.++++.+++.. +.||+||+.... ..-.++..+.++|+|.|+|.++... ...-|.+-...+
T Consensus 116 ~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~--------~~~~G~a~~~~i 186 (321)
T PRK10415 116 QYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRA--------CLFNGEAEYDSI 186 (321)
T ss_pred cCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccc--------cccCCCcChHHH
Confidence 46788999999999886 789999995311 2345677789999999999876321 111221212334
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH-hcchhhhcchhHH
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPL 627 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla-LGAdavg~gt~~L 627 (1429)
.++.+.+ +++||+.|||+|..|+.+++. .|||.|.+|++.+
T Consensus 187 ~~ik~~~-------~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 187 RAVKQKV-------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHHHhc-------CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 4444432 689999999999999999986 6999999999655
No 191
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=97.52 E-value=0.00031 Score=78.26 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=83.1
Q ss_pred HHHHHhhccCCCCCC----CCCCCCcc----cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 11 EEFRLLAEKCQLEVL----GQHENTRK----CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~r----~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
....+.|.||+|+-+ +.||+... +++|||||--..-.++.+.++- ..-.+.|||.-
T Consensus 64 ~~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g----------------~~~~~~sDsEv 127 (215)
T cd00714 64 GHVGIGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKG----------------YKFESETDTEV 127 (215)
T ss_pred ccEEEEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcC----------------CcccCCCHHHH
Confidence 356799999999986 46775433 5899999987776666665321 11256889987
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC---CeEEEecccCCCCCCcEEEEeCCEEEEEe
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG---RYIGAILDRNGLRPSRFYVLKDNVMVMAS 159 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg---~~~ga~ldrnglrp~r~~~~~d~~~~~~s 159 (1429)
+=..+.-... +...+.+..+. .++-.+|-.++++.|. ..+-+.-| .||. ||-.+|+.+++||
T Consensus 128 i~~l~~~~~~----~~~~~~~ai~~-------~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL-~~~~~~~~~~~aS 192 (215)
T cd00714 128 IAHLIEYYYD----GGLDLLEAVKK-------ALKRLEGAYALAVISKDEPDEIVAARN---GSPL-VIGIGDGENFVAS 192 (215)
T ss_pred HHHHHHHHHh----cCCCHHHHHHH-------HHHHhccceEEEEEEeCCCCEEEEEEC---CCCc-EEEEcCCeEEEEE
Confidence 7665543221 11123333343 3455699999999983 35666667 5999 7766778899999
Q ss_pred eccccc
Q psy12805 160 EVGVYD 165 (1429)
Q Consensus 160 e~g~~~ 165 (1429)
|.=.+.
T Consensus 193 E~~al~ 198 (215)
T cd00714 193 DAPALL 198 (215)
T ss_pred CHHHHH
Confidence 987664
No 192
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.47 E-value=0.00045 Score=77.04 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEecccc----ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEV----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 581 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~----Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~e 581 (1429)
.++-+.++|+.+|+..+ .||.||+.... .....+..+.++|+|+|+|++..... ...+-+....+..
T Consensus 107 ~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~--------~~~~~~~~~~~~~ 177 (231)
T cd02801 107 DPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ--------RYSGPADWDYIAE 177 (231)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHH--------cCCCCCCHHHHHH
Confidence 55668889999998874 89999986432 23345667888999999998763210 0111122222333
Q ss_pred HHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh-cchhhhcchhHHH
Q psy12805 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 628 (1429)
Q Consensus 582 v~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL-GAdavg~gt~~L~ 628 (1429)
+.+ ..+++|+++|||+|..|+.+++.. |||.|.+|++.+.
T Consensus 178 i~~-------~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 178 IKE-------AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHh-------CCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 322 236899999999999999999998 8999999996654
No 193
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.44 E-value=0.0011 Score=87.19 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred CeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHH
Q psy12805 1323 SEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1323 se~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
.+.+++||.||+|+|..| ++.+. ..+. .+-++.++|||. +++.|+++|+.++.+|++
T Consensus 711 ~~~~i~~~~vi~A~G~~~-~~~~~-------------~~~~-s~~~d~~~~f~G--------tvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 711 PRNDIKTKTVIMAIGIEN-NTQFD-------------EDKY-SYFGDCNPKYSG--------SVVKALASSKEGYDAINK 767 (1028)
T ss_pred ccccccCCEEEEecccCC-ccccc-------------cccc-ccccCCCCcccc--------HHHHHHHHHHhHHHHHHH
Confidence 557899999999999984 44331 1111 456788899986 899999999999999999
Q ss_pred HHhCCCCCC
Q psy12805 1403 FLMGTSTLP 1411 (1429)
Q Consensus 1403 ~L~g~~~~p 1411 (1429)
+|......+
T Consensus 768 ~l~~~~~~~ 776 (1028)
T PRK06567 768 KLINNNPSF 776 (1028)
T ss_pred HHhhCCCCC
Confidence 998765543
No 194
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.44 E-value=0.001 Score=78.26 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeccccC---------hHHHHHHHHhcCCcEEEEecCCCCCCcccccccc--ccCCCh-H
Q psy12805 510 LAELIYDLKCAN-PNARISVKLVSEVG---------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIK--NAGLPW-E 576 (1429)
Q Consensus 510 L~qlI~~Lk~~~-~~~pV~VKLv~e~G---------vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~--~~GiP~-~ 576 (1429)
+.+.|+.+|+.. ++.||.||+.+... ...++..+.++|+|+|.|++..... +..... ..+-++ .
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~---~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYES---PPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcc---cccccCCCCCCcchhH
Confidence 678889999887 46799999986421 1235677889999999998764321 111000 011121 1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh-cchhhhcchhHHH
Q psy12805 577 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 628 (1429)
Q Consensus 577 laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL-GAdavg~gt~~L~ 628 (1429)
..+..+.+.+ +++|++.|||+|..|+.+++.. |||.|++|++++.
T Consensus 271 ~~~~~ir~~~-------~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 271 ELAEKIKKAV-------KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 1222233222 5899999999999999999999 7999999997665
No 195
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=97.37 E-value=0.00039 Score=70.97 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=56.3
Q ss_pred hccCCCCC--CCCCCCCcc-------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHHHH
Q psy12805 17 AEKCQLEV--LGQHENTRK-------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADCAV 87 (1429)
Q Consensus 17 ~~~~~~~~--~~~~~~~~r-------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~a~ 87 (1429)
|.|++|-. -+-|| |. .|.|||||--.. =++ .. +..- ...-...||+..+=+++
T Consensus 1 h~rl~~~~~~~~~QP--~~~~~~~~~~l~~nG~i~N~~----eL~--~~---------l~~~-g~~~~~~~D~e~i~~~~ 62 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQP--FVSSEDGELVLVFNGEIYNRE----ELR--RE---------LEER-GHQFSSDSDSELILHLY 62 (125)
T ss_dssp --------------------------EEEEEEEES-HH----HHH--HT---------SSSS----S--SSHHHHHHHHH
T ss_pred Ccccccccccccccc--cccccccCEEEEEEEEEEChH----HHH--HH---------hhhc-ccccCCCCCHHHHHHHH
Confidence 77888722 22444 34 789999997332 222 11 1000 01124678887754433
Q ss_pred HhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCe--EEEecccCCCCCCcEEEEeC-CEEEEEeeccc
Q psy12805 88 MTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRY--IGAILDRNGLRPSRFYVLKD-NVMVMASEVGV 163 (1429)
Q Consensus 88 ~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~--~ga~ldrnglrp~r~~~~~d-~~~~~~se~g~ 163 (1429)
.- |.+|-..+++.-+|+-++++-|.+. +-+.-||.|.||. ||-.++ +.+++|||.-.
T Consensus 63 ~~------------------~~~~~~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~rpL-yy~~~~g~~~~faSe~~~ 122 (125)
T PF13537_consen 63 EE------------------YREWGEDFLKRLDGPFAFVIWDKDKKRLFLARDRFGIRPL-YYGRTDGNGLAFASEIKA 122 (125)
T ss_dssp HH---------------------HGGGGGGT--EEEEEEEEETTE--EEEEE-TT--S---EEEEETT-EEEEESSHHH
T ss_pred HH------------------HHHHHHHHHHhCCceEEEEEEeCCCcEEEEEECCCCCCCe-EEEEeCCCEEEEEEcHHH
Confidence 22 6678888888999999999999988 9999999999999 666665 79999999643
No 196
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=97.36 E-value=0.00035 Score=77.91 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=80.6
Q ss_pred HHHHhhccCCCCCC--CCCCCC----cccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHH
Q psy12805 12 EFRLLAEKCQLEVL--GQHENT----RKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADC 85 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~~----~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~ 85 (1429)
...+.|.|+.|+-+ +.||+. --.++|||||...+..++....+- ..-...||+..+-.
T Consensus 41 ~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~----------------~~~~~~sD~e~l~~ 104 (220)
T cd00712 41 GVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALG----------------HRFRTHSDTEVILH 104 (220)
T ss_pred CEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcC----------------CcCCCCChHHHHHH
Confidence 46789999998664 677722 247899999997665544333111 11245678776543
Q ss_pred HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeCCEEEEEeeccc
Q psy12805 86 AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKDNVMVMASEVGV 163 (1429)
Q Consensus 86 a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~ 163 (1429)
+.. .| -..+++-.+|+.++++-|. +.+-+.-||.|.||. ||-..++.+++|||.-.
T Consensus 105 ~~~-----~~----------------g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pL-y~~~~~~~~~~aSe~~~ 162 (220)
T cd00712 105 LYE-----EW----------------GEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPL-YYGRDGGGLAFASELKA 162 (220)
T ss_pred HHH-----HH----------------hHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEee-EEEEECCEEEEEcchHH
Confidence 321 12 1234566799999999887 778888999999999 66667789999999987
Q ss_pred cc
Q psy12805 164 YD 165 (1429)
Q Consensus 164 ~~ 165 (1429)
+.
T Consensus 163 l~ 164 (220)
T cd00712 163 LL 164 (220)
T ss_pred HH
Confidence 63
No 197
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.36 E-value=0.00084 Score=71.28 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC-hHHHHHHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQV 585 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP-~~laL~ev~q~ 585 (1429)
++.+.+.++.+|+..++.||++|+.+....... .+.+.|+|+|.+++..+++... ...+ ....+..
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~--~~~~~g~d~i~~~~~~~~~~~~-------~~~~~~~~~~~~---- 164 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELAAA--AAEEAGVDEVGLGNGGGGGGGR-------DAVPIADLLLIL---- 164 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccchh--hHHHcCCCEEEEcCCcCCCCCc-------cCchhHHHHHHH----
Confidence 577888899999887789999998765433221 1678899999999876543211 1111 1111111
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.. ..+++|+++|||.++.|+.+++.+|||++.+|+
T Consensus 165 ~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 165 AKR---GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 111 236899999999999999999999999998875
No 198
>KOG2755|consensus
Probab=97.23 E-value=0.0014 Score=74.08 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCccCCCCEEEeCCCCC
Q psy12805 1322 NSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR 1381 (1429)
Q Consensus 1322 gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~ 1381 (1429)
+....+.||.+++|+|..|+. +++-.-.++..+.|.++||+ .|+||.|+|||+||++.
T Consensus 264 ~~~~qlt~d~ivSatgvtpn~-e~~~~~~lq~~edggikvdd-~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 264 MADNQLTCDFIVSATGVTPNS-EWAMNKMLQITEDGGIKVDD-AMETSLPDVFAAGDVCT 321 (334)
T ss_pred cccceeeeeEEEeccccCcCc-eEEecChhhhccccCeeehh-hccccccceeeecceec
Confidence 334468899999999999544 46544456677888899997 89999999999999875
No 199
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.21 E-value=0.0018 Score=76.58 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccC-------hHHHHHHHHhcCCcEEEEecCCC-CCCccccccccccCCCh-
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVG-------VGVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPW- 575 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G-------vg~vA~~~akaGaD~I~IsG~~G-GTgaap~~~~~~~GiP~- 575 (1429)
..++-+.+++..+++.. +.||+||+-.... .-..+..+.++|+|.|+|.|+-. ..|.++ ..+..+|.
T Consensus 106 ~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg---~~~~~~~~~ 181 (318)
T TIGR00742 106 GNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP---KENREIPPL 181 (318)
T ss_pred cCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc---cccccCCch
Confidence 46788999999999876 6899999865321 12356778899999999998742 111111 11112221
Q ss_pred H-HHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 576 E-LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 576 ~-laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
- ..+.++.+.+ .+++||+.|+|+|..|+.+++. |||.|.+|+++|.
T Consensus 182 ~~~~i~~vk~~~------~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 182 RYERVYQLKKDF------PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred hHHHHHHHHHhC------CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 1 1233333321 2589999999999999998885 9999999997665
No 200
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.11 E-value=0.0044 Score=69.69 Aligned_cols=103 Identities=20% Similarity=0.133 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccC------hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVG------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 580 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~G------vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ 580 (1429)
++.+.+-|..+++.. .|+.+|+.-|.+ +......+.++|+|+|.-|-.-+..| .+...+.
T Consensus 105 ~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~g------------at~~~v~ 170 (221)
T PRK00507 105 WDAVEADIRAVVEAA--GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGG------------ATVEDVK 170 (221)
T ss_pred HHHHHHHHHHHHHhc--CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCC------------CCHHHHH
Confidence 577888888888764 467999965543 22344557889999998752222122 2223333
Q ss_pred HHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 581 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 581 ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
..++.+ +.++.|.++|||||..|+...+.+||+.+|.++..-+
T Consensus 171 ~m~~~~-----~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i 213 (221)
T PRK00507 171 LMRETV-----GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAI 213 (221)
T ss_pred HHHHHh-----CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHH
Confidence 333333 4679999999999999999999999999998775443
No 201
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.03 E-value=0.0035 Score=74.55 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-C------hHHHHHHHHhcCCcEEEEecCCCC-CCccccccccccCCCh-
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-G------VGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPW- 575 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-G------vg~vA~~~akaGaD~I~IsG~~GG-Tgaap~~~~~~~GiP~- 575 (1429)
..++-+.++++.+++.. ..||+||+-... + .-.++..+.++|+|.|+|.++.+. .|.++ ..+..+|.
T Consensus 116 ~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~---~~~~~~~~~ 191 (333)
T PRK11815 116 AEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP---KENREIPPL 191 (333)
T ss_pred cCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc---cccccCCCc
Confidence 35677889999999876 689999974321 1 123567788999999999976431 11111 11111121
Q ss_pred -HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 576 -ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 576 -~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
...+.++.+.+ .+++||+.|||+|..|+.+++. |||.|.+|++.|-
T Consensus 192 ~~~~i~~v~~~~------~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 192 DYDRVYRLKRDF------PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred CHHHHHHHHHhC------CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 11223332211 2589999999999999998876 8999999997654
No 202
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.96 E-value=0.0016 Score=61.09 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=51.2
Q ss_pred ceEEEccccccccHHHHHHhCCCCc------cccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEE
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPL------GNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEW 1307 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V------~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~ 1307 (1429)
+++|+|||.++||++..++.+|++| +.+++.+++ ++.+.+.+.|+++| +.++..+.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~-----~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDP-----DAAKILEEYLRKRGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSH-----HHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCH-----HHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 5899999999999999999999999 455555565 99999999999998 667888888865
No 203
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.91 E-value=0.0028 Score=70.82 Aligned_cols=101 Identities=22% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+++.++++.+++. ++.++.+-.. ....+..+.++|+|+|.++.+ |.|+... ....+....+.++.+.+
T Consensus 105 ~~~~~~i~~~~~~-~~i~vi~~v~----t~ee~~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~i~~i~~~~- 172 (221)
T PRK01130 105 ETLAELVKRIKEY-PGQLLMADCS----TLEEGLAAQKLGFDFIGTTLS-GYTEETK-----KPEEPDFALLKELLKAV- 172 (221)
T ss_pred CCHHHHHHHHHhC-CCCeEEEeCC----CHHHHHHHHHcCCCEEEcCCc-eeecCCC-----CCCCcCHHHHHHHHHhC-
Confidence 4566777888775 5778776532 223456788999999987533 3333221 11122333444444432
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
++++++.|||+|+.|+.+++.+|||.|.+|++.
T Consensus 173 ------~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 173 ------GCPVIAEGRINTPEQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred ------CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHh
Confidence 489999999999999999999999999999853
No 204
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.91 E-value=0.0023 Score=75.36 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccC-----hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVG-----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G-----vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
.+++.+.+++..+++.. +.||+||+-.... .-..+..+.++|++.|+|-++... ..+-|.+-...+
T Consensus 105 ~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~--------q~~~~~a~w~~i 175 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRK--------QRYKGPADWEAI 175 (309)
T ss_dssp C-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TT--------CCCTS---HHHH
T ss_pred cChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchh--------hcCCcccchHHH
Confidence 57788999999999987 5999999876443 334678899999999999998432 334454444556
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh-cchhhhcchhHHH
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 628 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL-GAdavg~gt~~L~ 628 (1429)
.++.+.+ +++||+.|+|.|..|+.+.+-. |+|.|.+|+++|.
T Consensus 176 ~~i~~~~-------~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 176 AEIKEAL-------PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHCHHC--------TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHhhcc-------cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 6665554 4999999999999999988766 9999999996543
No 205
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.85 E-value=0.00016 Score=89.86 Aligned_cols=91 Identities=47% Similarity=1.022 Sum_probs=83.2
Q ss_pred cccceEEEccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHH
Q psy12805 1207 KTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEA 1286 (1429)
Q Consensus 1207 k~~gf~kiAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~a 1286 (1429)
++.||+++.|...|.+++.+|..+|+|+... ...+.+.-+.+||++|+.|.|+...+||++..+|.|..++..+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~~g~~~~a 79 (485)
T TIGR01317 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNP-FDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEA 79 (485)
T ss_pred CCCCcceecccCcCcCCHHHHhhCHHHHhCC-CCHHHHHHHHHhccCCCCCCCCCCCCCCCCCcHHHHHHHHHCCCHHHH
Confidence 4679999999999999999999999998875 467788999999999999999987799999999999999999999999
Q ss_pred HHHHHHhCCCCC
Q psy12805 1287 LNQLLQTNNFPA 1298 (1429)
Q Consensus 1287 l~~~Le~~G~~~ 1298 (1429)
+..++++++|+.
T Consensus 80 ~~~~~~~~p~p~ 91 (485)
T TIGR01317 80 LDRLHATNNFPE 91 (485)
T ss_pred HHHHHhhCCchh
Confidence 999999998765
No 206
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0047 Score=73.20 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccC-----hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccC-CChHH
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVG-----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAG-LPWEL 577 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G-----vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~G-iP~~l 577 (1429)
..+++-+.++|+.++++.+++||+||+-.... ...++..+.++|++.|+|-|+.-. ....| ..| .
T Consensus 117 l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~--------~~y~~~ad~-~ 187 (323)
T COG0042 117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRA--------QGYLGPADW-D 187 (323)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHH--------hcCCCccCH-H
Confidence 35788999999999999866999999865432 234788899999999999987421 11222 233 4
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh-cchhhhcchhHH
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPL 627 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL-GAdavg~gt~~L 627 (1429)
.+.++.+.+ ++ ++||+.|+|.|..|+...+.. |+|.|.+|++.|
T Consensus 188 ~I~~vk~~~-----~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~ 232 (323)
T COG0042 188 YIKELKEAV-----PS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGAL 232 (323)
T ss_pred HHHHHHHhC-----CC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHc
Confidence 455555543 33 999999999999999888875 689999999654
No 207
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.81 E-value=0.009 Score=72.38 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCC-CCeEEEEecccc------------------C-----hHHHHHHHHhcCCcEEEEecCCCCCCcccc
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEV------------------G-----VGVVASGVAKGKAEHIVISGHDGGTGASSW 565 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~------------------G-----vg~vA~~~akaGaD~I~IsG~~GGTgaap~ 565 (1429)
+.++|+.+|+..+ +.||.||+.+.. | .-.++..+.++|+|+|.|++..-.. ..+
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~--~~~ 281 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA--WYW 281 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcc--ccc
Confidence 7789999999875 569999998521 1 1135667788999999998653111 000
Q ss_pred ccc-cccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 566 TGI-KNAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 566 ~~~-~~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
... ...+-.. ..-...+.+.+ +++|++.|+|+++.++.+++.-| ||.|++|++++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~ik~~~-------~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 282 NHPPMYQKKGMYLPYCKALKEVV-------DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccCCccCCcchhHHHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 0001011 11122233322 58999999999999999999987 999999997665
No 208
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.73 E-value=0.006 Score=68.10 Aligned_cols=101 Identities=24% Similarity=0.148 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
.+.++++.+++.. +.++.+... ....+..+.++|+|+|.+..+ |-|+... ....+....+.++.+.+
T Consensus 110 ~~~~~i~~~~~~g-~~~iiv~v~----t~~ea~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~l~~i~~~~-- 176 (219)
T cd04729 110 TLAELIKRIHEEY-NCLLMADIS----TLEEALNAAKLGFDIIGTTLS-GYTEETA-----KTEDPDFELLKELRKAL-- 176 (219)
T ss_pred CHHHHHHHHHHHh-CCeEEEECC----CHHHHHHHHHcCCCEEEccCc-ccccccc-----CCCCCCHHHHHHHHHhc--
Confidence 5666777887765 678887643 223456688899999976533 2222211 11223333444444332
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
++++++.|||+++.|+.+++.+|||.|.+|++.+
T Consensus 177 -----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 177 -----GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred -----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 4899999999999999999999999999999644
No 209
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.68 E-value=0.01 Score=70.87 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCC-CCeEEEEecccc----C-----hHHHHHHHHhcC-CcEEEEecCCCCCCc--cccccccccC-CCh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEV----G-----VGVVASGVAKGK-AEHIVISGHDGGTGA--SSWTGIKNAG-LPW 575 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~----G-----vg~vA~~~akaG-aD~I~IsG~~GGTga--ap~~~~~~~G-iP~ 575 (1429)
+.++++.+|+..+ +.+|.+|+.+.. | .-.++..+.++| +|+|.||+..-..-. .........+ -++
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~ 273 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPF 273 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchh
Confidence 7788899998863 568899988742 1 123567788898 899999754211100 0000000111 112
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 576 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 576 ~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
......+.+.+ .++|++.|+|+|..++-+++.-| ||.|++|++++.
T Consensus 274 ~~~~~~ik~~~-------~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 274 LPLAARIKQAV-------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHHHHHc-------CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 22334444432 58999999999999999999887 999999997665
No 210
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=96.57 E-value=0.0085 Score=76.66 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=78.0
Q ss_pred HHHHHhhccCCCCCC----CCCCCCc--c--cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 11 EEFRLLAEKCQLEVL----GQHENTR--K--CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~--r--~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
....+.|.||+|+-+ +.||+.. . .++|||||--.+-.++.+..+- ..-.+.|||.-
T Consensus 64 ~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g----------------~~~~~~tDsEv 127 (607)
T TIGR01135 64 GGVGIGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARG----------------HVFVSDTDTEV 127 (607)
T ss_pred ccEEEEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCC----------------CccccCCHHHH
Confidence 346799999999986 4566532 2 7899999987776666554321 11245788887
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEc---CCeEEEecccCCCCCCcEEEEeCCEEEEEe
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTD---GRYIGAILDRNGLRPSRFYVLKDNVMVMAS 159 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~d---g~~~ga~ldrnglrp~r~~~~~d~~~~~~s 159 (1429)
+=..+.-.. ....++.+..+. +++-.+|-.++++-| ++.+-+.-| + ||. |+-.+|+.+++||
T Consensus 128 i~~l~~~~~----~~~~~~~~ai~~-------~~~~l~G~~a~~i~~~~~~~~l~~~Rd--~-~PL-~~~~~~~~~~~aS 192 (607)
T TIGR01135 128 IAHLIEEYL----REGGDLLEAVQK-------ALKQLRGAYALAVLHADHPETLVAARS--G-SPL-IVGLGDGENFVAS 192 (607)
T ss_pred HHHHHHHHH----hcCCCHHHHHHH-------HHHHhcCceEEEEEecCCCCEEEEEEC--C-Cce-EEEECCCeEEEEE
Confidence 665443222 111222223333 344558888888866 454666666 3 999 7777788899999
Q ss_pred eccc
Q psy12805 160 EVGV 163 (1429)
Q Consensus 160 e~g~ 163 (1429)
|.=.
T Consensus 193 E~~a 196 (607)
T TIGR01135 193 DVTA 196 (607)
T ss_pred ChHH
Confidence 9743
No 211
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=96.54 E-value=0.014 Score=69.52 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=79.4
Q ss_pred ccccCCC-C-CCCC--CHHH----HHHHHHHHHHhCCCCeEEEEecccc-------C--h---HHHHHHHHhcCCcEEEE
Q psy12805 494 GLISPPP-H-HDIY--SIED----LAELIYDLKCANPNARISVKLVSEV-------G--V---GVVASGVAKGKAEHIVI 553 (1429)
Q Consensus 494 ~LisP~~-h-~di~--sied----L~qlI~~Lk~~~~~~pV~VKLv~e~-------G--v---g~vA~~~akaGaD~I~I 553 (1429)
..+||.- + .|-| |+|. +.++|+.+|+..+.-+|+||+.++. | . ..++..+.++|+|+|.|
T Consensus 181 qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 181 QFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred HhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 4556632 2 2444 4553 7788999999875548999998752 1 1 23667788899999999
Q ss_pred ecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 554 SGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 554 sG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
|... +... . .-.......++.+.+ +++|+++|+|+ +.++.+++.-| ||.|++|++++.
T Consensus 261 s~g~--~~~~----~---~~~~~~~~~~ik~~~-------~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 261 VEPR--VAGN----P---EDQPPDFLDFLRKAF-------KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred ecCC--CCCc----c---cccchHHHHHHHHHc-------CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 7542 2111 0 112223334455543 58999999997 88888889887 999999997654
No 212
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.49 E-value=0.019 Score=68.46 Aligned_cols=122 Identities=20% Similarity=0.135 Sum_probs=80.9
Q ss_pred ccccCCC--CCCCC--CHHH----HHHHHHHHHHhCCCCeEEEEecccc----Ch-----HHHHHHHHhcCCcEEEEecC
Q psy12805 494 GLISPPP--HHDIY--SIED----LAELIYDLKCANPNARISVKLVSEV----GV-----GVVASGVAKGKAEHIVISGH 556 (1429)
Q Consensus 494 ~LisP~~--h~di~--sied----L~qlI~~Lk~~~~~~pV~VKLv~e~----Gv-----g~vA~~~akaGaD~I~IsG~ 556 (1429)
..+||-. -.|-| |+|. +.++|+.+|+.. +.||.||+.++. |. ..++..+.++|+|+|.|++.
T Consensus 171 qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 171 EFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred HhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4456633 23545 5554 778899999987 679999999742 22 23667788899999999865
Q ss_pred CCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 557 DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 557 ~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
. . . +.......|..+. ....+.+. .+++|++.|+|+|+.++.+++.-| ||.|++|++++.
T Consensus 250 ~--~-~-~~~~~~~~~~~~~-~~~~ik~~-------~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 250 A--V-V-PARIDVYPGYQVP-FAEHIREH-------ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred C--C-C-CCCCCCCccccHH-HHHHHHhh-------cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 2 1 0 0000111122222 22333332 258999999999999999999988 999999997655
No 213
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.47 E-value=0.019 Score=68.93 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCC-----CCeEEEEecccc----Ch-----HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh
Q psy12805 510 LAELIYDLKCANP-----NARISVKLVSEV----GV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 575 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-----~~pV~VKLv~e~----Gv-----g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~ 575 (1429)
+.++|+.+|+..+ +.+|.+|+.+.. |. -.++..+.++|+|+|.|++..- +.... ..... .
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~-~~~~~--~~~~~---~ 270 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF-DRKSR--RGRDD---N 270 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc-ccccc--cCCcc---h
Confidence 7788999999874 789999998742 21 1356778889999999997532 21110 00011 1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 576 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 576 ~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
...+.++.+.+ ...++|++.|||+|+.++.+++.-|||.|++|++++.
T Consensus 271 ~~~~~~ik~~~-----~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 271 QTIMELVKERI-----AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 11122222221 2358999999999999999999999999999997665
No 214
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=96.42 E-value=0.0081 Score=68.82 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHhhccCCCCCCC--CCCCCcc----cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHHH
Q psy12805 13 FRLLAEKCQLEVLG--QHENTRK----CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADCA 86 (1429)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~r----~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~a 86 (1429)
..++|-||.|.-+- -+-|||+ +++|||.|...+-.+.-. ....+....+.+||..+=.-
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~~~~~~~HNG~i~n~~~l~~~l---------------~~~~~~~~~~~tDSE~~~~l 146 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLDGFRLLRRRL---------------LRLLPRLPVGTTDSELAFAL 146 (257)
T ss_pred EEEEEEecCCCCCCccccCCCcccCCEEEEeCCccCCcchhhHHH---------------HhcCccCCccCCHHHHHHHH
Confidence 46789999987632 1225554 789999998665222111 11111234678899876553
Q ss_pred HHhhCccccccCCCCCHHHHHHHHHHhhccCCC--CcceEEEEEcCCeEEEecccCCCCCCcEEEEe-------------
Q psy12805 87 VMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPW--DGPALLTFTDGRYIGAILDRNGLRPSRFYVLK------------- 151 (1429)
Q Consensus 87 ~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epw--dgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~------------- 151 (1429)
++-.+-+.... .. ..-..++-+..+.+ ..| .|.+.++++||+.+-|.-|.+ .||. ||...
T Consensus 147 i~~~l~~~~~~-~~-~~~~~al~~~~~~l-~~~~~~~~~n~~~~dg~~l~a~r~~~-~~~L-~~~~~~~~~~~~~~~~~~ 221 (257)
T cd01908 147 LLSRLLERDPL-DP-AELLDAILQTLREL-AALAPPGRLNLLLSDGEYLIATRYAS-APSL-YYLTRRAPFGCARLLFRS 221 (257)
T ss_pred HHHHHHhcCCc-ch-HHHHHHHHHHHHHH-HHhCcCeEEEEEEECCCEEEEEEeCC-CCce-EEEecccccccccccccc
Confidence 32222111100 00 00123333333333 233 478899999999999999988 6776 77765
Q ss_pred -----CCEEEEEeecc
Q psy12805 152 -----DNVMVMASEVG 162 (1429)
Q Consensus 152 -----d~~~~~~se~g 162 (1429)
++.+++|||.=
T Consensus 222 ~~~~~~~~~vvaSE~l 237 (257)
T cd01908 222 VTTPNDDGVVVASEPL 237 (257)
T ss_pred ccCCCCCEEEEEeCCC
Confidence 47899999964
No 215
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=96.37 E-value=0.0056 Score=66.75 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=39.2
Q ss_pred cCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEe-CCEEEEEeecc
Q psy12805 116 MEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLK-DNVMVMASEVG 162 (1429)
Q Consensus 116 ~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~-d~~~~~~se~g 162 (1429)
++.-+|+-++++.|. +.+-+.-||.|.||.=|..++ |+.+++||++.
T Consensus 116 ~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~ 165 (181)
T cd03766 116 LSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSG 165 (181)
T ss_pred HHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccC
Confidence 455599999999988 789999999999999444443 78999999986
No 216
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.37 E-value=0.022 Score=67.75 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCC-CCeEEEEeccc----cC--h---HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh-HH
Q psy12805 509 DLAELIYDLKCANP-NARISVKLVSE----VG--V---GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-EL 577 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~-~~pV~VKLv~e----~G--v---g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~-~l 577 (1429)
-+.++|+.+|+..+ +.||.||+.++ .| . -.++..+.+.|+|+|.|+... .+... ....+-++ ..
T Consensus 206 f~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~-~~~~~----~~~~~~~~~~~ 280 (336)
T cd02932 206 FLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGG-NSPAQ----KIPVGPGYQVP 280 (336)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCccc----ccCCCccccHH
Confidence 37788999999874 68999999863 12 1 135566788899999998542 22110 00111111 12
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
.+.++.+. .+++|++.|+|.|..|+..++..| ||.|++|++++.
T Consensus 281 ~~~~ir~~-------~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 281 FAERIRQE-------AGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 22222222 258999999999999999999999 999999997665
No 217
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.36 E-value=0.041 Score=60.97 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChH---HHHHHHHhcCCcEEEEecCCCCCCcccccc----ccccCCChHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTG----IKNAGLPWEL 577 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg---~vA~~~akaGaD~I~IsG~~GGTgaap~~~----~~~~GiP~~l 577 (1429)
.+-+++..+.++.|+..|+.+++|-++--.-.. ..|..+.++|+|+|.-. |||...|... .-+...|++.
T Consensus 100 f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE---Ggtss~p~~~g~lglIekaapTLA 176 (242)
T PF04481_consen 100 FSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE---GGTSSKPTSPGILGLIEKAAPTLA 176 (242)
T ss_pred ecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC---CCCCCCCCCcchHHHHHHHhHHHH
Confidence 477889999999999999999999866433332 37888999999999854 4454444221 1122346644
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
+..+..+. .+++++.+.||..- -+=.|+++||..||+|++
T Consensus 177 aay~ISr~-------v~iPVlcASGlS~v-T~PmAiaaGAsGVGVGSa 216 (242)
T PF04481_consen 177 AAYAISRA-------VSIPVLCASGLSAV-TAPMAIAAGASGVGVGSA 216 (242)
T ss_pred HHHHHHhc-------cCCceEeccCcchh-hHHHHHHcCCcccchhHH
Confidence 43333332 26999999998754 356789999999999983
No 218
>KOG2335|consensus
Probab=96.32 E-value=0.028 Score=66.39 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChH---HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 581 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg---~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~e 581 (1429)
..+|-+.++|..++... ++||++|+-...+.. ..|..+.++|+++++|-|+---.. .. ..|.--..++..
T Consensus 124 ~~~eLv~e~V~~v~~~l-~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~k-----g~-~~~pad~~~i~~ 196 (358)
T KOG2335|consen 124 DNPELVGEMVSAVRANL-NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQK-----GL-KTGPADWEAIKA 196 (358)
T ss_pred cCHHHHHHHHHHHHhhc-CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhc-----CC-CCCCcCHHHHHH
Confidence 46688999999999876 789999987665544 367788999999999988742210 00 122212234444
Q ss_pred HHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH-hcchhhhcchhHHH----HhccccccccccCCCCccceecCHHHHh
Q psy12805 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLI----TMGCTMMRKCHLNTCPVGIATQDPELRK 656 (1429)
Q Consensus 582 v~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla-LGAdavg~gt~~L~----algc~~~r~c~~~~cP~giatqd~~lr~ 656 (1429)
+.+. +++ +++++-|+|.+..|+-.++- -||+.|..|.+.|. -++ -.-..||.+++-..-....
T Consensus 197 v~~~-----~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~------~~~~~~~~~~~~~~l~~~~ 264 (358)
T KOG2335|consen 197 VREN-----VPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT------AGYGPTPWGCVEEYLDIAR 264 (358)
T ss_pred HHHh-----CcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc------CCCCCCHHHHHHHHHHHHH
Confidence 4433 344 89999999999999988877 89999988885443 111 1124566666665555544
Q ss_pred hcCC
Q psy12805 657 KFAG 660 (1429)
Q Consensus 657 ~~~g 660 (1429)
.|.+
T Consensus 265 e~~g 268 (358)
T KOG2335|consen 265 EFGG 268 (358)
T ss_pred HcCC
Confidence 4543
No 219
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.29 E-value=0.022 Score=63.93 Aligned_cols=100 Identities=24% Similarity=0.271 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCC
Q psy12805 513 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 592 (1429)
Q Consensus 513 lI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR 592 (1429)
+++.++.. +.+++++..+ . ..+..+.+.|+|+|.+.+.. .+|... ....+....+.++.+.+
T Consensus 94 ~~~~~~~~--~i~~i~~v~~---~-~~~~~~~~~gad~i~~~~~~-~~G~~~-----~~~~~~~~~i~~i~~~~------ 155 (236)
T cd04730 94 VVERLKAA--GIKVIPTVTS---V-EEARKAEAAGADALVAQGAE-AGGHRG-----TFDIGTFALVPEVRDAV------ 155 (236)
T ss_pred HHHHHHHc--CCEEEEeCCC---H-HHHHHHHHcCCCEEEEeCcC-CCCCCC-----ccccCHHHHHHHHHHHh------
Confidence 45555543 5788877432 2 34566778999999998752 111110 00023333444444432
Q ss_pred CceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhc
Q psy12805 593 SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 631 (1429)
Q Consensus 593 ~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~alg 631 (1429)
++++++.|||+++.|+.+++.+||+.|.+|++.+....
T Consensus 156 -~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 156 -DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred -CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 57999999999999999999999999999997776554
No 220
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.27 E-value=0.046 Score=62.10 Aligned_cols=103 Identities=21% Similarity=0.182 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
...|+.+.|+..+.....--+.+=++ ..--..|+.++++|+++|--=|..-|+| .|+.....+..+.+
T Consensus 105 llpd~~~tv~aa~~L~~~Gf~vlpyc--~~d~~~ak~l~~~G~~~vmPlg~pIGsg---------~gi~~~~~i~~i~e- 172 (250)
T PRK00208 105 LLPDPIETLKAAEILVKEGFVVLPYC--TDDPVLAKRLEEAGCAAVMPLGAPIGSG---------LGLLNPYNLRIIIE- 172 (250)
T ss_pred CCcCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHH-
Confidence 34455555555555421111222122 1334568889999999995433333332 23433223333333
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
. .+++||++|||.|+.|+.+++-+|||+|.++++.
T Consensus 173 ---~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 173 ---Q---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 207 (250)
T ss_pred ---h---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHh
Confidence 2 2589999999999999999999999999998854
No 221
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=96.25 E-value=0.012 Score=75.34 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=76.1
Q ss_pred HHHHHhhccCCCCCC----CCCCCCc----ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 11 EEFRLLAEKCQLEVL----GQHENTR----KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~~~~----r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
....+.|-|++|+-+ +.||+.. -+++|||||.-.+..+.-+.++- ..-.+.|||.-
T Consensus 65 g~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g----------------~~~~~~sDsEv 128 (604)
T PRK00331 65 GTTGIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKG----------------HVFKSETDTEV 128 (604)
T ss_pred CcEEEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCC----------------CcccCCCHHHH
Confidence 356799999999986 4566531 16799999987665544443221 11246788876
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEc---CCeEEEecccCCCCCCcEEEEeCCEEEEEe
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTD---GRYIGAILDRNGLRPSRFYVLKDNVMVMAS 159 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~d---g~~~ga~ldrnglrp~r~~~~~d~~~~~~s 159 (1429)
+=..+.-.. ++..++ ..++ ...++-.+|-.++++.| ++.+-+.=| + ||. ||--+|+.+++||
T Consensus 129 i~~l~~~~~----~~g~~~---~~a~----~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd--~-~PL-~~g~~~~~~~~aS 193 (604)
T PRK00331 129 IAHLIEEEL----KEGGDL---LEAV----RKALKRLEGAYALAVIDKDEPDTIVAARN--G-SPL-VIGLGEGENFLAS 193 (604)
T ss_pred HHHHHHHHH----hhCCCH---HHHH----HHHHHhccCeeEEEEEecCCCCEEEEEEC--C-Cce-EEEEcCCeEEEEE
Confidence 554333211 111122 2222 22445669999999998 445666656 3 999 6666677899999
Q ss_pred ecccc
Q psy12805 160 EVGVY 164 (1429)
Q Consensus 160 e~g~~ 164 (1429)
|.=.+
T Consensus 194 E~~al 198 (604)
T PRK00331 194 DALAL 198 (604)
T ss_pred CHHHH
Confidence 97433
No 222
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.017 Score=64.64 Aligned_cols=103 Identities=24% Similarity=0.222 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHH------HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGV------VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~------vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
.++.+.+.|..++++.++. +.||...|.+.-+ ...-+.++|||+|.-|-.....|+ ++.-+
T Consensus 107 ~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gA------------T~edv 173 (228)
T COG0274 107 NWEAVEREIRAVVEACADA-VVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGA------------TVEDV 173 (228)
T ss_pred CHHHHHHHHHHHHHHhCCC-ceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC------------CHHHH
Confidence 5688899999999988654 8889888876432 223367899999986622122222 22222
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
....+.+ ..++.+=+||||||..|+...+.+||.-+|.++..
T Consensus 174 ~lM~~~v-----g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~v 215 (228)
T COG0274 174 KLMKETV-----GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSGV 215 (228)
T ss_pred HHHHHHh-----ccCceeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence 2222332 45788999999999999999999999999887754
No 223
>KOG3851|consensus
Probab=96.24 E-value=0.011 Score=68.69 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=85.2
Q ss_pred hhcc-chHHHHHHHHHHhCCCCCCc--EEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccc
Q psy12805 1277 LIYH-NNWSEALNQLLQTNNFPAGI--KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTL 1353 (1429)
Q Consensus 1277 lvf~-~e~~~al~~~Le~~G~~~gv--~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLel 1353 (1429)
.+|+ +...+++.+..+++++..+. +..+|... +.....+....+|..++++++++=+..-..+| +.+++..+ .
T Consensus 231 ~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~~s~~-a 306 (446)
T KOG3851|consen 231 TIFGVKHYADALEKVIQERNITVNYKRNLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLANSDL-A 306 (446)
T ss_pred ceecHHHHHHHHHHHHHhcceEeeeccceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhhcCcc-c
Confidence 3555 57889999999988854322 33334221 10111111123467788999988776665544 34666665 3
Q ss_pred cCCCCEEecCCCCc-cCCCCEEEeCCCCCCCCc--HHHHHHHHHHHHHHHHHHHhCCCC
Q psy12805 1354 DPRSNYSTVEKTYL-TTVPRVYAAGDCRRGQSL--VVWAISEGRQAAREIDSFLMGTST 1409 (1429)
Q Consensus 1354 d~~G~I~VD~~~~~-TSvPgVFAAGD~a~g~~l--vv~Ai~qGr~AA~nI~~~L~g~~~ 1409 (1429)
|+.|++.||..+.| +..|+||++|||.+.|.. ...+.+|..+.-+|+-..++|+.+
T Consensus 307 dktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~p 365 (446)
T KOG3851|consen 307 DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRP 365 (446)
T ss_pred CcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCc
Confidence 67899999986655 578999999999986643 344456777888999999988754
No 224
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.23 E-value=0.051 Score=61.69 Aligned_cols=75 Identities=27% Similarity=0.247 Sum_probs=53.9
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
--..|+.++++|+++|--=|..-|+| .|+.....+..+.+ . .+++||++|||.|+.|+.+|+.+
T Consensus 133 d~~~ar~l~~~G~~~vmPlg~pIGsg---------~Gi~~~~~I~~I~e----~---~~vpVI~egGI~tpeda~~Amel 196 (248)
T cd04728 133 DPVLAKRLEDAGCAAVMPLGSPIGSG---------QGLLNPYNLRIIIE----R---ADVPVIVDAGIGTPSDAAQAMEL 196 (248)
T ss_pred CHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHH----h---CCCcEEEeCCCCCHHHHHHHHHc
Confidence 44568889999999995433333332 34544444443333 2 25899999999999999999999
Q ss_pred cchhhhcchhH
Q psy12805 616 GADEIGLSTAP 626 (1429)
Q Consensus 616 GAdavg~gt~~ 626 (1429)
|||+|.++|+.
T Consensus 197 GAdgVlV~SAI 207 (248)
T cd04728 197 GADAVLLNTAI 207 (248)
T ss_pred CCCEEEEChHh
Confidence 99999999854
No 225
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.22 E-value=0.035 Score=66.15 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=80.4
Q ss_pred ccccCCCC--CCCC--CHHH----HHHHHHHHHHhCC-CCeEEEEeccc----cCh-----HHHHHHHHhcCCcEEEEec
Q psy12805 494 GLISPPPH--HDIY--SIED----LAELIYDLKCANP-NARISVKLVSE----VGV-----GVVASGVAKGKAEHIVISG 555 (1429)
Q Consensus 494 ~LisP~~h--~di~--sied----L~qlI~~Lk~~~~-~~pV~VKLv~e----~Gv-----g~vA~~~akaGaD~I~IsG 555 (1429)
...||-.. .|=| |+|+ +.++|+.+|+..+ +.||.||+.++ .|. -.++..+.++|+|+|.|++
T Consensus 178 qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 178 QFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 34566532 2444 5554 7789999999875 57999999752 121 2356778889999999986
Q ss_pred CCCCCCcccccc---ccccCCC---hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 556 HDGGTGASSWTG---IKNAGLP---WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 556 ~~GGTgaap~~~---~~~~GiP---~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
. +...+... ......+ +.....++.+. .+++|+++|+|.|..|+.+++..| ||.|++|++++.
T Consensus 258 g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-------v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 258 G---TYESPAMAGAKKESTIAREAYFLEFAEKIRKV-------TKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred C---CCCCccccccccCCccccchhhHHHHHHHHHH-------cCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 4 21111110 0000000 11222233332 268999999999999999999998 899999996664
No 226
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.03 E-value=0.058 Score=65.03 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=81.9
Q ss_pred ccccCCCCC--CCC--CHHH----HHHHHHHHHHhCCC-CeEEEEecccc-----Ch-----HHHHHHHHhcC-CcEEEE
Q psy12805 494 GLISPPPHH--DIY--SIED----LAELIYDLKCANPN-ARISVKLVSEV-----GV-----GVVASGVAKGK-AEHIVI 553 (1429)
Q Consensus 494 ~LisP~~h~--di~--sied----L~qlI~~Lk~~~~~-~pV~VKLv~e~-----Gv-----g~vA~~~akaG-aD~I~I 553 (1429)
..+||-.++ |-| |+|. +.++++.+|+.++. .||.++|++.. |. ..++..+.+.| +|+|.+
T Consensus 178 qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 178 QFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred HhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
Confidence 344654443 666 7776 77889999999854 58999999832 21 23677788999 799999
Q ss_pred ecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 554 SGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 554 sG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
++..-..... +...+ |.-. +..+ ..+ +. +.+++++++|+|+++..+-.++.-| ||.|+||++++.
T Consensus 258 s~~~~~~~~~----~~~~~-~~~~-~~~a-~~i-~~--~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 258 SEGGYERGGT----ITVSG-PGYQ-VEFA-ARI-KK--AVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred ecccccCCCC----ccccc-cchh-HHHH-HHH-HH--hcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 9754221111 11111 1100 0000 011 11 2259999999999999999999998 999999997665
No 227
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.95 E-value=0.001 Score=88.62 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=66.5
Q ss_pred CCCcCCccCccchHHHHhh-------ccCCCce----EEEccccccccHHHHHH----------hCCCCccccccccchh
Q psy12805 1219 APYRPAEKRLKDWDEIYAT-------QHVRKGL----RIQAARCMECGVPFCQS----------SHGCPLGNIIPKWNDL 1277 (1429)
Q Consensus 1219 ~P~~p~~~rv~D~~el~~l-------~~~pk~l----vVIGaGcIgcE~a~c~s----------~~Gc~V~~iLp~~d~l 1277 (1429)
.+++|+.+|+.||+|+... ...++.+ ..+++||+.|+.|+|+. ..|||+++.||.|..+
T Consensus 147 ~~~~~~~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~ 226 (944)
T PRK12779 147 PYIRPAEERAVDFDLVNQGYLGYQSLGYSVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDL 226 (944)
T ss_pred cccCCHHHHhhChHhhccccccccccCCCHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHH
Confidence 4567788999999999852 1233443 37899999999999963 4699999999999999
Q ss_pred hccchHHHHHHHHHHhCCCCC
Q psy12805 1278 IYHNNWSEALNQLLQTNNFPA 1298 (1429)
Q Consensus 1278 vf~~e~~~al~~~Le~~G~~~ 1298 (1429)
+..++|.++++.+.++|.|+.
T Consensus 227 i~~g~~~~A~~~i~~~np~p~ 247 (944)
T PRK12779 227 LGNGKHREALELIESCNPLPN 247 (944)
T ss_pred HHCCCHHHHHHHHHHhCChhH
Confidence 999999999999999998764
No 228
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=95.93 E-value=0.017 Score=74.37 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=74.9
Q ss_pred HHHhhccCCCCCC----CCCCCCc---c-cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 13 FRLLAEKCQLEVL----GQHENTR---K-CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 13 ~~~~~~~~~~~~~----~~~~~~~---r-~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
..+.|.||+|.-+ +.|||.. + .++|||||-.-+..|+.+..+-. .-.+.|||.-+=
T Consensus 97 ~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~----------------~f~s~tDsEvi~ 160 (640)
T PTZ00295 97 IGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGI----------------KFRSETDSEVIA 160 (640)
T ss_pred EEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCC----------------cccCCChHHHHH
Confidence 4688999999864 3566532 1 48999999877777776654321 114588888665
Q ss_pred HHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEc---CCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 85 CAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTD---GRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 85 ~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~d---g~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
..+.... .|. .++ -+.....++-.+|-.++++-| ++.+-+.-|+ ||. |+-..|+.+++|||.
T Consensus 161 ~li~~~~--~~g--~~~-------~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL-~~g~~~~~~~~aSE~ 225 (640)
T PTZ00295 161 NLIGLEL--DQG--EDF-------QEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPL-LVGIGDDSIYVASEP 225 (640)
T ss_pred HHHHHHH--hcC--CCH-------HHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---Cce-EEEEcCceEEEEech
Confidence 5432111 111 122 222333444457777888866 4556666565 999 655556779999997
Q ss_pred ccc
Q psy12805 162 GVY 164 (1429)
Q Consensus 162 g~~ 164 (1429)
=.+
T Consensus 226 ~al 228 (640)
T PTZ00295 226 SAF 228 (640)
T ss_pred HHH
Confidence 554
No 229
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.92 E-value=0.26 Score=59.54 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=67.3
Q ss_pred CcEEEEEEEeecCCCceEEE--E-eCCCeeEEEecEEEEeccccCchhhhhhccC--ccccCCCCEEecCCCCcc--CC-
Q psy12805 1299 GIKTVKVEWTKDATGRWKMD--E-VPNSEKIFKCDLVLLAMGFLGPERYIANELD--LTLDPRSNYSTVEKTYLT--TV- 1370 (1429)
Q Consensus 1299 gv~v~~Ve~~k~~~G~~~~v--~-~~gse~~ieaDlVLlAiG~~pp~~~Lle~lG--Leld~~G~I~VD~~~~~T--Sv- 1370 (1429)
.++++.++.. .+|+.... . ..++.++++.|.||+|+|.+.....+++.+. +..+++|..+|+.+ ++. .-
T Consensus 298 ~~ev~~~~~~--G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~d-Y~v~~~~~ 374 (436)
T COG3486 298 LSEVQSVEPA--GDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRD-YRVLWDGP 374 (436)
T ss_pred ccceeeeecC--CCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCc-eeeecCCC
Confidence 6667777553 34643322 2 3567789999999999999855555665543 56788898999763 332 21
Q ss_pred --CCEEEeCCCCC-----CCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy12805 1371 --PRVYAAGDCRR-----GQSLVVWAISEGRQAAREIDSFLMGTSTLPDV 1413 (1429)
Q Consensus 1371 --PgVFAAGD~a~-----g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p~~ 1413 (1429)
-.||+.|-+.. -+.+-.-|.+ +..|.+.|.|...-+.+
T Consensus 375 ~~~~ifvqn~e~htHGig~pdLsl~a~R-----aa~I~~~L~g~~~~~~~ 419 (436)
T COG3486 375 GKGRIFVQNAELHTHGIGAPDLSLGAWR-----AAVILNSLLGREKYPVP 419 (436)
T ss_pred CcceEEEecccccccccCCccchHHHHH-----HHHHHHHHhCcCCCCCc
Confidence 25999987653 2444444555 34466777776654444
No 230
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.87 E-value=0.1 Score=58.58 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccCh------HHHHHHHHhcCCcEEEEe-cCCCCCCccccccccccCCChHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGV------GVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gv------g~vA~~~akaGaD~I~Is-G~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
.+.+.+.|..+++...+ +.+|+..|.+. ....+-+.++|||+|..| |.. ..|++ +..+
T Consensus 101 ~~~v~~ei~~i~~~~~g--~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~-~~gat------------~~dv 165 (211)
T TIGR00126 101 EEVVYDDIRAVVEACAG--VLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG-AGGAT------------VEDV 165 (211)
T ss_pred HHHHHHHHHHHHHHcCC--CeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCC------------HHHH
Confidence 35566666677666533 45565556542 223455788999999986 442 22222 1222
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
....+.+ +.++.|-++|||||..|+...+.+||+-+|.++.
T Consensus 166 ~~m~~~v-----~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 166 RLMRNTV-----GDTIGVKASGGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred HHHHHHh-----ccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcchH
Confidence 2222322 3478999999999999999999999999987653
No 231
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=95.81 E-value=0.021 Score=70.85 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=80.6
Q ss_pred hHHHHHhhccCCCCCC--CCCCC--Cc--ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 10 EEEFRLLAEKCQLEVL--GQHEN--TR--KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~--~~--r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
+....|.|.|..+.-+ |.||. .- -+|.|||||.-....++...++-. .-...||+.-+
T Consensus 39 ~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~----------------~~~~~~D~e~i 102 (467)
T TIGR01536 39 DGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGY----------------TFQTDSDTEVI 102 (467)
T ss_pred cCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCC----------------ccCCCCHHHHH
Confidence 3456788999987654 46772 11 278999999966655444432211 11346676654
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-.+. =+|-..+.+-.+|.-++++-|. +.+-..-||.|.||. ||-.+++.+++|||.
T Consensus 103 l~~y---------------------~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPL-yy~~~~~~~~faSe~ 160 (467)
T TIGR01536 103 LHLY---------------------EEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPL-YYAYDGGQLYFASEI 160 (467)
T ss_pred HHHH---------------------HHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCe-EEEEECCEEEEEecH
Confidence 3332 1223345566799999999888 888999999999999 777778999999998
Q ss_pred ccc
Q psy12805 162 GVY 164 (1429)
Q Consensus 162 g~~ 164 (1429)
..+
T Consensus 161 kaL 163 (467)
T TIGR01536 161 KAL 163 (467)
T ss_pred HHH
Confidence 765
No 232
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.63 E-value=0.13 Score=61.83 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCC-CCeEEEEecccc----C--h---HHHHHHHHhcCCcEEEEecC--CCCCCccccccccccCC-C
Q psy12805 508 EDLAELIYDLKCANP-NARISVKLVSEV----G--V---GVVASGVAKGKAEHIVISGH--DGGTGASSWTGIKNAGL-P 574 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~-~~pV~VKLv~e~----G--v---g~vA~~~akaGaD~I~IsG~--~GGTgaap~~~~~~~Gi-P 574 (1429)
.-+.++|+.+|+..+ +.+|.+|+.+.- | . -.++..+.++|+|+|.||.. +..+ +... ...+- .
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~---~~~~-~~~~~~~ 263 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARV---PTIA-TSVPRGA 263 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC---cccc-ccCCchh
Confidence 347889999999874 678999998631 1 1 13567788899999999752 1111 1000 01111 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 575 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 575 ~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
+.....++.+.+ .++|++.|++++..|+..++.-| +|.|++|++++.
T Consensus 264 ~~~~~~~ik~~v-------~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 264 FAWATAKLKRAV-------DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred hHHHHHHHHHhC-------CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 333334444432 68999999999999999999988 999999997665
No 233
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=95.58 E-value=0.031 Score=64.10 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=72.2
Q ss_pred HHHhhccCCCCC-CCC--CCCCcc----cccccccccchHhHH-HHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 13 FRLLAEKCQLEV-LGQ--HENTRK----CVAHNGEINTVRGNV-NFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 13 ~~~~~~~~~~~~-~~~--~~~~~r----~~~hngeint~~gn~-~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
..+.|=||.|.- +-. .=|||+ +++|||.|.-...-+ ..++ +. +. ++.+. ...+.+||.-+=
T Consensus 84 ~~i~HvR~AT~G~~~~~~N~hPf~~g~~~~aHNG~i~n~~~~~r~~L~--~~-l~-------~~~~~-~~~g~TDSE~i~ 152 (251)
T TIGR03442 84 CVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFVDNFRQTLYRPLR--DR-LP-------DIFYL-AIEGSTDSAHLF 152 (251)
T ss_pred eEEEEeeeCCCCCCcchhcCCCCCcCCEEEEeCCccCCchhhhhHHHH--hc-CC-------hhhcc-CCCCCCHHHHHH
Confidence 456799999864 332 225555 679999986433110 1111 10 10 11111 236789998554
Q ss_pred HHHHhhCccccccCCCCCHHHHHHHHHHh-hccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 85 CAVMTMVPEAWQNDGTMPDEKRDFYNWAA-CAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 85 ~a~~~~~p~a~~~~~~~~~~~~~~y~~~~-~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
.-+.-.+.... ...+.+..+...+-.. ...++ -..+.++++||+.+-|.=|.+ |. ||.+.++.+++|||.
T Consensus 153 ~li~~~~~~~~--~~~~~~ai~~~~~~l~~~~~~~-~~~~n~~~sdg~~l~a~R~~~---~L-~~~~~~~~~vvASEp 223 (251)
T TIGR03442 153 ALLLNRLLEND--PRALEEALAEVLLILFSAAAAP-RVRLNLLLTDGSRLVATRWAD---TL-YWLKDPEGVIVASEP 223 (251)
T ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHHHhhCc-ccceEEEEEcCCEEEEEEeCC---eE-EEEEcCCEEEEEeCC
Confidence 42221111110 0233333333333222 11222 344899999999999999988 87 666667789999998
No 234
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.57 E-value=0.083 Score=61.47 Aligned_cols=99 Identities=26% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 500 PHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 500 ~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
.|..++ .+.+.|..+|+..|..+|.|- +.--..+..++++|+|+|.+|+.. ..-+
T Consensus 162 nHi~~~---~i~~av~~~r~~~~~~kIeVE----v~~leea~~a~~agaDiI~LDn~~------------------~e~l 216 (278)
T PRK08385 162 NHLALV---PLEEAIRRAKEFSVYKVVEVE----VESLEDALKAAKAGADIIMLDNMT------------------PEEI 216 (278)
T ss_pred CHHHHH---HHHHHHHHHHHhCCCCcEEEE----eCCHHHHHHHHHcCcCEEEECCCC------------------HHHH
Confidence 444554 377788888887776666665 445556777899999999999883 2346
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
.++...+...+++.++.|.+|||| |...+...+..|+|.+.+|+
T Consensus 217 ~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 217 REVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 777777877777778999999999 79999999999999888776
No 235
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.55 E-value=0.063 Score=62.32 Aligned_cols=92 Identities=23% Similarity=0.212 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPN-ARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~-~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
+.+.+.|..+|+..|. .+|.| |+..-..|..++++|+|+|.+++.+ ...|.++.+.+
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~V----Ev~tleea~~A~~~GaDiI~LDn~~------------------~e~l~~~v~~~ 223 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEI----ECESLEEAKNAMNAGADIVMCDNMS------------------VEEIKEVVAYR 223 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEE----EeCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh
Confidence 5678899999998763 55555 5555566788899999999998763 12344554443
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
. . ...++.|.++||| |...+...+.+|+|.+.+|+
T Consensus 224 ~-~-~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 224 N-A-NYPHVLLEASGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred h-c-cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 1 1 1246889999999 99999999999999998887
No 236
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=95.51 E-value=0.094 Score=60.28 Aligned_cols=103 Identities=20% Similarity=0.119 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccCh-------HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGV-------GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 578 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gv-------g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~la 578 (1429)
..+.+.+.|..+++... .++.+|+..|.+. .....-+.++|||+|.-|-..+..|+ ++..
T Consensus 113 ~~~~v~~ei~~v~~~~~-~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gA------------t~ed 179 (257)
T PRK05283 113 NEQVGFELVKACKEACA-ANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNA------------TLEA 179 (257)
T ss_pred cHHHHHHHHHHHHHHhC-CCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC------------CHHH
Confidence 34566677777777653 2477888877642 12334578899999997522232232 2333
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhh
Q psy12805 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 621 (1429)
Q Consensus 579 L~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg 621 (1429)
+....+.+.+.+...++.|=++|||||..|+...+.+|.+..|
T Consensus 180 v~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 180 ARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred HHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhC
Confidence 4444455544455567999999999999999999999988776
No 237
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=95.38 E-value=0.04 Score=70.45 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=77.1
Q ss_pred HHHHHhhccCCCCCC---CCCC--CCc--ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 11 EEFRLLAEKCQLEVL---GQHE--NTR--KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~---~~~~--~~~--r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
...++.|.|+.+.-+ |.|| ++- -+|+|||||---+--++-+.++- ..-...||+.-+
T Consensus 41 ~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g----------------~~f~~~sD~Evi 104 (589)
T TIGR03104 41 GPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIYNYRELRAELEALG----------------YRFFSDGDTEVI 104 (589)
T ss_pred CCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcC----------------CcccCCCHHHHH
Confidence 446788999987654 6777 221 37899999975543333222111 111346777665
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCC--eEEEecccCCCCCCcEEEEeCCEEEEEeec
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGR--YIGAILDRNGLRPSRFYVLKDNVMVMASEV 161 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~--~~ga~ldrnglrp~r~~~~~d~~~~~~se~ 161 (1429)
-.+. -+|-..+.+--+|..++++-|.+ .+-..-||.|.+|. ||-..++.+++|||.
T Consensus 105 l~~y---------------------~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPL-yy~~~~~~~~faSe~ 162 (589)
T TIGR03104 105 LKAY---------------------HAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPL-YYAEDAGRLRFASSL 162 (589)
T ss_pred HHHH---------------------HHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCe-EEEEeCCEEEEEeCH
Confidence 4332 22323344445899999888876 78888999999999 777778899999996
Q ss_pred ccc
Q psy12805 162 GVY 164 (1429)
Q Consensus 162 g~~ 164 (1429)
-.+
T Consensus 163 kaL 165 (589)
T TIGR03104 163 PAL 165 (589)
T ss_pred HHH
Confidence 554
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.37 E-value=0.0026 Score=78.86 Aligned_cols=86 Identities=35% Similarity=0.664 Sum_probs=77.4
Q ss_pred ceEEEccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHH
Q psy12805 1210 GFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQ 1289 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~ 1289 (1429)
.|+.++|...|++++.+|+.+|+|+.. ...++.++-+.++|+.|+.|.|.. +||++..+|.|..++..+++.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~c~~c~~~~C~~--~CP~~~~~~~~~~~~~~g~~~~a~~~ 78 (467)
T TIGR01318 2 QFIDLPRQDPDKIPVEERKTHFREIYC-PFDPGQAQYQADRCLYCGNPYCEW--KCPVHNAIPQWLQLVQEGRIDEAAEL 78 (467)
T ss_pred CCccccccCcCcCCHHHHhcChHhhcC-CCCHHHHHHHHHhcccCCCccccc--cCCCCCcHHHHHHHHHCCCHHHHHHH
Confidence 467889999999999999999998754 457788999999999999999997 99999999999999999999999999
Q ss_pred HHHhCCCCC
Q psy12805 1290 LLQTNNFPA 1298 (1429)
Q Consensus 1290 ~Le~~G~~~ 1298 (1429)
++++|.|+.
T Consensus 79 ~~~~np~~~ 87 (467)
T TIGR01318 79 SHQTNTLPE 87 (467)
T ss_pred HHHhCCchH
Confidence 999987654
No 239
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.36 E-value=0.09 Score=58.32 Aligned_cols=95 Identities=26% Similarity=0.234 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccC------hHHHHHHHHhcCCcEEEEe-cCCCCCCccccccccccCCChHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVG------VGVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVA 580 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~G------vg~vA~~~akaGaD~I~Is-G~~GGTgaap~~~~~~~GiP~~laL~ 580 (1429)
+.+.+.|..+++...+ +.+|+..+.+ +...++.+.++|||+|..+ |.. ..|++ ++.+..+.
T Consensus 101 ~~~~~ei~~v~~~~~g--~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~at---------~~~v~~~~ 168 (203)
T cd00959 101 EAVYEEIAAVVEACGG--APLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFG-PGGAT---------VEDVKLMK 168 (203)
T ss_pred HHHHHHHHHHHHhcCC--CeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCC---------HHHHHHHH
Confidence 4456666666666533 4455454543 2234566889999999986 332 11111 22222222
Q ss_pred HHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhc
Q psy12805 581 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 622 (1429)
Q Consensus 581 ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~ 622 (1429)
+.+ +.+++|-++||+||..|+...+.+||+.+|.
T Consensus 169 ---~~~-----~~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 169 ---EAV-----GGRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred ---HHh-----CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 222 2578999999999999999999999998874
No 240
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.34 E-value=0.33 Score=55.47 Aligned_cols=105 Identities=16% Similarity=0.077 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
.+++.+++..+|+. +..+++-+.+......+ ..+.+....++.+ +..++||.. +-.....-+.++.+.
T Consensus 115 ~~~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l-~~~~~~~~~~l~m-sv~~~~g~~-------~~~~~~~~i~~lr~~- 182 (244)
T PRK13125 115 PDDLEKYVEIIKNK--GLKPVFFTSPKFPDLLI-HRLSKLSPLFIYY-GLRPATGVP-------LPVSVERNIKRVRNL- 182 (244)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCCCCHHHH-HHHHHhCCCEEEE-EeCCCCCCC-------chHHHHHHHHHHHHh-
Confidence 56778888888887 46677776666555443 3345555667666 556666531 111111233333322
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+.+.+|+++|||+|..|+.+++..|||.+-+|++.+-
T Consensus 183 -----~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 183 -----VGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred -----cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 2234689999999999999999999999999987654
No 241
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.26 E-value=0.0025 Score=82.19 Aligned_cols=80 Identities=34% Similarity=0.626 Sum_probs=71.1
Q ss_pred cCCCCCcCCccCccchHHHHhhccCCCceEEEcccccccc-HHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhC
Q psy12805 1216 RETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECG-VPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTN 1294 (1429)
Q Consensus 1216 tGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE-~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~ 1294 (1429)
|...+.+++++|..||+|+... ..++.++.+.+||+.|+ .|+|++ +||+++.+|.|..++..++|.++++.++++|
T Consensus 193 r~~~~~~~~~~r~~~f~e~~~~-~~~~~a~~~~~rc~~C~~~~~C~~--~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~n 269 (654)
T PRK12769 193 RGEPDKLAIEARKTGFDEIYLP-FRADQAQREASRCLKCGEHSICEW--TCPLHNHIPQWIELVKAGNIDAAVELSHQTN 269 (654)
T ss_pred ccCcCcCCHHHHhcCHHhhcCC-CCHHHHHHHHHhhhcCCCCCCccc--cCCCCCcHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4567778889999999998765 35678899999999996 899997 9999999999999999999999999999999
Q ss_pred CCCC
Q psy12805 1295 NFPA 1298 (1429)
Q Consensus 1295 G~~~ 1298 (1429)
.|+.
T Consensus 270 p~p~ 273 (654)
T PRK12769 270 SLPE 273 (654)
T ss_pred Cchh
Confidence 8775
No 242
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.18 E-value=0.0044 Score=83.39 Aligned_cols=81 Identities=25% Similarity=0.524 Sum_probs=71.0
Q ss_pred ccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhC
Q psy12805 1215 SRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTN 1294 (1429)
Q Consensus 1215 AtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~ 1294 (1429)
.+-..|++++.+|..|++|+... ...+......+||+.|+.+.|.+ +||+++.+|.|...+..++|.+++..++++|
T Consensus 298 ~~~~~~~~~~~er~~~f~ev~~~-~~~~~~~~ea~rC~~c~~~~C~~--~CP~~~dip~~~~~i~~g~~~~A~~~i~~~n 374 (1006)
T PRK12775 298 HQTPMPERDAVERARNFKEVNLG-YSLEDALQEAERCIQCAKPTCIA--GCPVQIDIPVFIRHVVVRDFDGALEVIYEAS 374 (1006)
T ss_pred ccCCCccCCHHHHhhCHHHHhcc-CCHHHHHHHHHhccCCCCccccC--CCCCCCCHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44457788899999999998743 46677888999999999999997 9999999999999999999999999999999
Q ss_pred CCCC
Q psy12805 1295 NFPA 1298 (1429)
Q Consensus 1295 G~~~ 1298 (1429)
.|+.
T Consensus 375 p~p~ 378 (1006)
T PRK12775 375 IFPS 378 (1006)
T ss_pred ChHH
Confidence 8764
No 243
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.03 E-value=0.088 Score=59.72 Aligned_cols=77 Identities=21% Similarity=0.148 Sum_probs=54.5
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
....+..+.++|+|.|++++..-. |. .-|..+.+ +.++.+. ..++++++||+++..|+.+++.+
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~-g~-------~~g~~~~~-i~~i~~~-------~~~pvia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRD-GT-------KKGYDLEL-IRAVSSA-------VNIPVIASGGAGKPEHFVEAFEE 214 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCC-CC-------CCCCCHHH-HHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHh
Confidence 334667788999999999876421 11 23344433 2333222 26899999999999999999987
Q ss_pred -cchhhhcchhHHH
Q psy12805 616 -GADEIGLSTAPLI 628 (1429)
Q Consensus 616 -GAdavg~gt~~L~ 628 (1429)
||+.|.+|++++-
T Consensus 215 ~g~dgv~vg~al~~ 228 (243)
T cd04731 215 GGADAALAASIFHF 228 (243)
T ss_pred CCCCEEEEeHHHHc
Confidence 9999999886654
No 244
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.87 E-value=0.0041 Score=80.01 Aligned_cols=80 Identities=29% Similarity=0.466 Sum_probs=70.8
Q ss_pred cCCCCCcCCccCccchHHHHhhccCCCceEEEcccccccc-HHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhC
Q psy12805 1216 RETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECG-VPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTN 1294 (1429)
Q Consensus 1216 tGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE-~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~ 1294 (1429)
|-..+++++..|..+|+++... ..++.++.+++|||.|+ .|+|++ +||+++.+|.|..++..++|.++++.++++|
T Consensus 176 r~~~~~~~~~~R~~~f~Ev~~~-~~~~~~~~ea~rC~~C~~~~~C~~--~CP~~~~i~~~~~~~~~g~~~~a~~~~~~~n 252 (639)
T PRK12809 176 RKGADKISASERKTHFGEIYCG-LDPQQATYESDRCVYCAEKANCNW--HCPLHNAIPDYIRLVQEGKIIEAAELCHQTS 252 (639)
T ss_pred ccCcccCCHHHHhcCHHHhhcc-CCHHHHHHHHHHHhCCCCCCcccc--cCCCCCcHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4456677888899999998865 35778999999999996 999997 9999999999999999999999999999999
Q ss_pred CCCC
Q psy12805 1295 NFPA 1298 (1429)
Q Consensus 1295 G~~~ 1298 (1429)
.|+.
T Consensus 253 p~p~ 256 (639)
T PRK12809 253 SLPE 256 (639)
T ss_pred Ccch
Confidence 8765
No 245
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=94.83 E-value=0.21 Score=56.33 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=56.1
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
--.+|+.+.++|+..|--=|..-|| ..|+-....|..+.+.+ +|+||+|+||-++.|++.|+-|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGS---------g~Gi~n~~~l~~i~~~~-------~vPvIvDAGiG~pSdaa~AMEl 196 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGS---------GRGIQNPYNLRIIIERA-------DVPVIVDAGIGTPSDAAQAMEL 196 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT------------SSTHHHHHHHHHHG-------SSSBEEES---SHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCEEEeccccccc---------CcCCCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHc
Confidence 4457899999999999988887776 45677777777766554 7999999999999999999999
Q ss_pred cchhhhcchhH
Q psy12805 616 GADEIGLSTAP 626 (1429)
Q Consensus 616 GAdavg~gt~~ 626 (1429)
|||+|-+.|+.
T Consensus 197 G~daVLvNTAi 207 (247)
T PF05690_consen 197 GADAVLVNTAI 207 (247)
T ss_dssp T-SEEEESHHH
T ss_pred CCceeehhhHH
Confidence 99999888854
No 246
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.82 E-value=0.17 Score=61.14 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCC-CCeEEEEecccc--------Ch-----HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEV--------GV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 575 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~--------Gv-----g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~ 575 (1429)
+.++|+.+|+..+ +.||.||+.++. |. ..++..+.++|+|+|.++... . ..| ...|.++
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~--~-~~~----~~~~~~~ 269 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRR--F-WEP----EFEGSEL 269 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--c-cCC----CcCccch
Confidence 7789999999874 679999998631 11 124555788899999987631 1 111 1112222
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCc------------------ccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 576 ELGVAETHQVLALNNLRSRVVLQADGQI------------------RTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 576 ~laL~ev~q~L~~~gLR~~V~LiasGGI------------------rtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
.++ .++.+. .+++|++.|+| +|+.++-+++.-| ||.|++|++++.
T Consensus 270 ~~~-~~~k~~-------~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 270 NLA-GWTKKL-------TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred hHH-HHHHHH-------cCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 221 223332 25899999999 5888888889877 999999997665
No 247
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.82 E-value=0.16 Score=57.44 Aligned_cols=77 Identities=21% Similarity=0.118 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
.-..+..+.+.|++.|++.+..-. |. .-|..+. .+.++.+.+ .+++++.|||++..|+.++..+
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~-g~-------~~g~~~~-~i~~i~~~~-------~iPvia~GGI~~~~di~~~~~~ 214 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVE-GL-------LEGVNTE-PVKELVDSV-------DIPVIASGGVTTLDDLRALKEA 214 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCC-CC-------cCCCCHH-HHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHc
Confidence 445677788899999999775311 00 2234442 344444432 5899999999999999999999
Q ss_pred cchhhhcchhHHH
Q psy12805 616 GADEIGLSTAPLI 628 (1429)
Q Consensus 616 GAdavg~gt~~L~ 628 (1429)
||+.|.+|++++-
T Consensus 215 Ga~gv~vgsa~~~ 227 (241)
T PRK13585 215 GAAGVVVGSALYK 227 (241)
T ss_pred CCCEEEEEHHHhc
Confidence 9999999996654
No 248
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=94.72 E-value=0.19 Score=56.43 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
.-..+..+.+.|++.|++.+..- .| ...|..+ ..+.++.+. .++++++.||+++..|+.+++..
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~-~g-------~~~g~~~-~~i~~i~~~-------~~ipvi~~GGi~~~~di~~~~~~ 211 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISR-DG-------TLSGPNF-ELYKELAAA-------TGIPVIASGGVSSLDDIKALKEL 211 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecC-CC-------ccCCCCH-HHHHHHHHh-------cCCCEEEecCCCCHHHHHHHHHC
Confidence 34467778899999999886531 11 1344343 334444443 26899999999999999999999
Q ss_pred cchhhhcchhHHH
Q psy12805 616 GADEIGLSTAPLI 628 (1429)
Q Consensus 616 GAdavg~gt~~L~ 628 (1429)
||+.|.+|++++.
T Consensus 212 Ga~gv~vg~~~~~ 224 (234)
T cd04732 212 GVAGVIVGKALYE 224 (234)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999997654
No 249
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=94.68 E-value=0.28 Score=59.25 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=76.9
Q ss_pred ccccCCCCC--CCC--CHHH----HHHHHHHHHHhCCCCeEEEEecccc-------Ch------HHHHHHHHhcCCcEEE
Q psy12805 494 GLISPPPHH--DIY--SIED----LAELIYDLKCANPNARISVKLVSEV-------GV------GVVASGVAKGKAEHIV 552 (1429)
Q Consensus 494 ~LisP~~h~--di~--sied----L~qlI~~Lk~~~~~~pV~VKLv~e~-------Gv------g~vA~~~akaGaD~I~ 552 (1429)
...||--.+ |-| |+|. +.++|+.+|+..+.-+|.||++++. |. -.++..+.++|+|+|.
T Consensus 188 qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~ 267 (362)
T PRK10605 188 QFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLH 267 (362)
T ss_pred HhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 445665333 556 6776 7789999999887657999998741 22 1245667788999999
Q ss_pred EecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 553 ISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 553 IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
||...-.. ..+.+..++ .++.+. ..++|++.|++ |+..+.+++.-| ||.|++|++++.
T Consensus 268 vs~~~~~~---------~~~~~~~~~-~~ik~~-------~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 268 MSEPDWAG---------GEPYSDAFR-EKVRAR-------FHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred eccccccC---------CccccHHHH-HHHHHH-------CCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 98631100 011121111 112221 14678888986 899999999999 999999997665
No 250
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=94.67 E-value=0.068 Score=66.45 Aligned_cols=180 Identities=11% Similarity=0.066 Sum_probs=94.9
Q ss_pred cceEEEccC--CCCCcCCccCccchH-------HHHhhc-cCCCceEEEccccccccHHHHHHhCCCCccccccccchhh
Q psy12805 1209 RGFIKYSRE--TAPYRPAEKRLKDWD-------EIYATQ-HVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLI 1278 (1429)
Q Consensus 1209 ~gf~kiAtG--s~P~~p~~~rv~D~~-------el~~l~-~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lv 1278 (1429)
..++.+||| +.|+.|......+|. +..... ...++++|||+|..|++++.-++..+.+|......-..
T Consensus 162 ~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~-- 239 (461)
T PLN02172 162 FDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES-- 239 (461)
T ss_pred cCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccc--
Confidence 355889999 788887543332221 111111 24589999999999999999888777777433221100
Q ss_pred ccchHHHHHHHH-HHhCCCCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccC-ccccCC
Q psy12805 1279 YHNNWSEALNQL-LQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELD-LTLDPR 1356 (1429)
Q Consensus 1279 f~~e~~~al~~~-Le~~G~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lG-Leld~~ 1356 (1429)
+ ...++ +...++..+..+..+. ++|. .+..+|+ .+++|.||+++|.+ ++..+++..+ +.++++
T Consensus 240 ---~---~~~~~~~~~~~v~~~~~I~~~~----~~g~--V~f~DG~--~~~~D~Ii~~TGy~-~~~pfL~~~~~i~v~~~ 304 (461)
T PLN02172 240 ---D---TYEKLPVPQNNLWMHSEIDTAH----EDGS--IVFKNGK--VVYADTIVHCTGYK-YHFPFLETNGYMRIDEN 304 (461)
T ss_pred ---c---ccccCcCCCCceEECCccccee----cCCe--EEECCCC--CccCCEEEECCcCC-ccccccCcccceeeCCC
Confidence 0 00000 1112222222233221 2343 2233443 57899999999999 5566766433 233321
Q ss_pred CCEEecC--CCCccC-CCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy12805 1357 SNYSTVE--KTYLTT-VPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLPD 1412 (1429)
Q Consensus 1357 G~I~VD~--~~~~TS-vPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p~ 1412 (1429)
. +. +- ..+-.. .|.++.+|=+.. ......+-.|++.+ .+.+.|+..+|.
T Consensus 305 ~-v~-~Ly~~~f~~~~~p~LafiG~~~~-~~~f~~~E~Qa~~~----a~v~sG~~~LPs 356 (461)
T PLN02172 305 R-VE-PLYKHVFPPALAPGLSFIGLPAM-GIQFVMFEIQSKWV----AAVLSGRVTLPS 356 (461)
T ss_pred c-ch-hhHHhhcCCCCCCcEEEEecccc-ccCchhHHHHHHHH----HHHHcCCCCCcC
Confidence 1 10 00 001223 489999994422 22334455555544 456677766664
No 251
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.66 E-value=0.065 Score=64.06 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=80.7
Q ss_pred ccccCCCC--CCCC--CHHH----HHHHHHHHHHhCC-CCeEEEEecccc----ChH--H---HHHHHHhcCCcEEEEec
Q psy12805 494 GLISPPPH--HDIY--SIED----LAELIYDLKCANP-NARISVKLVSEV----GVG--V---VASGVAKGKAEHIVISG 555 (1429)
Q Consensus 494 ~LisP~~h--~di~--sied----L~qlI~~Lk~~~~-~~pV~VKLv~e~----Gvg--~---vA~~~akaGaD~I~IsG 555 (1429)
..+||-.. .|-| |+|. +.++|+.+|+..+ +.||.+|++++- |.. . ++..+.++|+|++.++.
T Consensus 178 qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~ 257 (341)
T PF00724_consen 178 QFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSH 257 (341)
T ss_dssp HHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEE
T ss_pred heeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccc
Confidence 45577543 3666 6776 7888999998864 678999999853 211 1 35557788999988764
Q ss_pred CCCCCCcccccc-ccccCCChHHHH-HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 556 HDGGTGASSWTG-IKNAGLPWELGV-AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 556 ~~GGTgaap~~~-~~~~GiP~~laL-~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
........|... .......+.+-+ ..+.+.. +++|++.||+++...+.+++.-| ||.|++|++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 258 GSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp ESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred cccccccccccccccccccchhhhhhhhhhhhc-------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 432211111100 001111111112 2222222 58999999999999899999988 999999997665
No 252
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.61 E-value=0.2 Score=57.13 Aligned_cols=77 Identities=22% Similarity=0.192 Sum_probs=61.4
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.--.+|+.+.++|+..|--=|..-|+ ..|+.....|..+.+ + .+++|+.++||.++.|+++|+-
T Consensus 146 ~D~v~a~rLed~Gc~aVMPlgsPIGS---------g~Gl~n~~~l~~i~e----~---~~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 146 ADPMLAKHLEDIGCATVMPLGSPIGS---------GQGLQNLLNLQIIIE----N---AKIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred CCHHHHHHHHHcCCeEEeeccCcccC---------CCCCCCHHHHHHHHH----c---CCCcEEEeCCcCCHHHHHHHHH
Confidence 34457899999999999887777665 456777766665443 2 3699999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
||||+|.+.|+..
T Consensus 210 lGaDgVL~nSaIa 222 (267)
T CHL00162 210 LGASGVLLNTAVA 222 (267)
T ss_pred cCCCEEeecceee
Confidence 9999998887443
No 253
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=94.61 E-value=0.17 Score=56.79 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc
Q psy12805 537 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 616 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG 616 (1429)
-..+..+.+.|++.|++.+.... | ...|..+ ..+.++.+. .++++++.||+++..|+.++...|
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~-g-------~~~g~~~-~~i~~i~~~-------~~ipvia~GGi~~~~di~~~~~~G 211 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRD-G-------TLSGPNF-ELTKELVKA-------VNVPVIASGGVSSIDDLIALKKLG 211 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCC-C-------CcCCCCH-HHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHCC
Confidence 34677788999998776644321 1 1234433 233333332 268999999999999999999999
Q ss_pred chhhhcchhHHH
Q psy12805 617 ADEIGLSTAPLI 628 (1429)
Q Consensus 617 Adavg~gt~~L~ 628 (1429)
|+.|-+|++++.
T Consensus 212 adgv~ig~a~~~ 223 (230)
T TIGR00007 212 VYGVIVGKALYE 223 (230)
T ss_pred CCEEEEeHHHHc
Confidence 999999997664
No 254
>PLN02411 12-oxophytodienoate reductase
Probab=94.53 E-value=0.29 Score=59.80 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=74.8
Q ss_pred ccccCC--CCCCCC--CHHH----HHHHHHHHHHhCCCCeEEEEecccc-------C--h---HHHHHHHHhc------C
Q psy12805 494 GLISPP--PHHDIY--SIED----LAELIYDLKCANPNARISVKLVSEV-------G--V---GVVASGVAKG------K 547 (1429)
Q Consensus 494 ~LisP~--~h~di~--sied----L~qlI~~Lk~~~~~~pV~VKLv~e~-------G--v---g~vA~~~aka------G 547 (1429)
..+||- .-.|-| |+|. +.++|+.+|+..+.-.|+||++++. + . -.++..+.+. |
T Consensus 194 QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (391)
T PLN02411 194 QFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSK 273 (391)
T ss_pred HhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCC
Confidence 456773 334666 6776 7889999999986546999999731 1 1 1234444442 5
Q ss_pred CcEEEEecCCCCCCccccccccccCCC-h-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcch
Q psy12805 548 AEHIVISGHDGGTGASSWTGIKNAGLP-W-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLST 624 (1429)
Q Consensus 548 aD~I~IsG~~GGTgaap~~~~~~~GiP-~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt 624 (1429)
+|+|.||...-. ....... ...+.+ . .....++.+.. .++|++.|++ +..+..+++.-| ||.|++|+
T Consensus 274 vd~i~vs~g~~~-~~~~~~~-~~~~~~~~~~~~a~~ik~~v-------~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR 343 (391)
T PLN02411 274 LAYLHVTQPRYT-AYGQTES-GRHGSEEEEAQLMRTLRRAY-------QGTFMCSGGF-TRELGMQAVQQGDADLVSYGR 343 (391)
T ss_pred eEEEEecCCccc-ccCCCcc-cccCCccchhHHHHHHHHHc-------CCCEEEECCC-CHHHHHHHHHcCCCCEEEECH
Confidence 999999863210 0000000 011111 1 11112233322 4789999999 567777888888 99999999
Q ss_pred hHHH
Q psy12805 625 APLI 628 (1429)
Q Consensus 625 ~~L~ 628 (1429)
+++.
T Consensus 344 ~~ia 347 (391)
T PLN02411 344 LFIS 347 (391)
T ss_pred HHHh
Confidence 7665
No 255
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=94.49 E-value=0.18 Score=61.09 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCC-CCeEEEEecccc----C----hH---HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHH
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEV----G----VG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWEL 577 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~----G----vg---~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~l 577 (1429)
+.++|+.+|+..+ +.+|.+||.++. + .. .++..+.+ .+|+|.+|...-.....+.. ...-|..+ .
T Consensus 203 ~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~-~~~~~~~~-~ 279 (370)
T cd02929 203 WRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSR-FYPEGHQE-P 279 (370)
T ss_pred HHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccc-cCCccccH-H
Confidence 7789999999874 679999998743 1 11 23344444 48999998531100000000 00011111 1
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
...++.+. .+++|++.|++++..++.+++.-| ||.|++|++++.
T Consensus 280 ~~~~ik~~-------~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 280 YIKFVKQV-------TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHH-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 22333332 258999999999999999999988 999999997654
No 256
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=94.49 E-value=0.17 Score=57.74 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh-
Q psy12805 537 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL- 615 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL- 615 (1429)
-..+..+.++|++.|++.+..-.. ...|..| ..+.++.+. ..++|+++||++|..|+.++..+
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g--------~~~G~d~-~~i~~i~~~-------~~ipviasGGi~s~~D~~~l~~~~ 212 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDG--------TLTGPNL-ELLREVCAR-------TDAPVVASGGVSSLDDLRALAELV 212 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCC--------CccCCCH-HHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHhhhc
Confidence 346677889999999998764221 1345444 333444443 26899999999999999988654
Q ss_pred --cchhhhcchhHHH
Q psy12805 616 --GADEIGLSTAPLI 628 (1429)
Q Consensus 616 --GAdavg~gt~~L~ 628 (1429)
||+.|-+|++++.
T Consensus 213 ~~GvdgV~igra~~~ 227 (241)
T PRK14024 213 PLGVEGAIVGKALYA 227 (241)
T ss_pred cCCccEEEEeHHHHc
Confidence 9999999997665
No 257
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.45 E-value=0.19 Score=55.19 Aligned_cols=95 Identities=27% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEE--ecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVI--SGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~I--sG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+.|.+++.++|+.. .++..-. ..-..+..+.++|+|+|-- +|+ |..++ + --|-...+.+
T Consensus 79 ~~l~~li~~i~~~~--~l~MADi----st~ee~~~A~~~G~D~I~TTLsGY---T~~t~-----~-~~pD~~lv~~---- 139 (192)
T PF04131_consen 79 ETLEELIREIKEKY--QLVMADI----STLEEAINAAELGFDIIGTTLSGY---TPYTK-----G-DGPDFELVRE---- 139 (192)
T ss_dssp S-HHHHHHHHHHCT--SEEEEE-----SSHHHHHHHHHTT-SEEE-TTTTS---STTST-----T-SSHHHHHHHH----
T ss_pred cCHHHHHHHHHHhC--cEEeeec----CCHHHHHHHHHcCCCEEEcccccC---CCCCC-----C-CCCCHHHHHH----
Confidence 56888999999875 5554442 2334567789999999954 454 43332 2 2343333333
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
|... .++||+-|++.|+.++.+++.+||.+|-+|++
T Consensus 140 l~~~----~~pvIaEGri~tpe~a~~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 140 LVQA----DVPVIAEGRIHTPEQAAKALELGAHAVVVGSA 175 (192)
T ss_dssp HHHT----TSEEEEESS--SHHHHHHHHHTT-SEEEE-HH
T ss_pred HHhC----CCcEeecCCCCCHHHHHHHHhcCCeEEEECcc
Confidence 3332 47899999999999999999999999999984
No 258
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.40 E-value=0.17 Score=58.61 Aligned_cols=105 Identities=25% Similarity=0.155 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCc------------------ccc---c--
Q psy12805 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGA------------------SSW---T-- 566 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTga------------------ap~---~-- 566 (1429)
+.++++.+|..+ +.|+..-.. .-..|..+.++|+|+|--.+. |+|+. +.. +
T Consensus 100 ~~~~~~~iK~~~-~~l~MAD~s----tleEal~a~~~Gad~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~ 173 (283)
T cd04727 100 ADEEHHIDKHKF-KVPFVCGAR----NLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELY 173 (283)
T ss_pred HHHHHHHHHHHc-CCcEEccCC----CHHHHHHHHHCCCCEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 456777888776 666654421 222356688999999987777 56765 111 1
Q ss_pred -cccccCCChHHHHHHHHHHHHhcCCCCceEEE--EcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 567 -GIKNAGLPWELGVAETHQVLALNNLRSRVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 567 -~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Li--asGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
..+..+.++.+ |.++.+.+ +++++ +.|||.|+.|+..++.+||++|.++++.+-
T Consensus 174 ~~~~~~~~d~el-Lk~l~~~~-------~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 174 AVAKEIQAPYEL-VKETAKLG-------RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred hhhcccCCCHHH-HHHHHHhc-------CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 01123445433 44444432 47786 999999999999999999999999986553
No 259
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.35 E-value=0.22 Score=56.07 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHH-HHHh
Q psy12805 537 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVV-AALL 615 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~k-AlaL 615 (1429)
-..+..+.++|+|.|++++.... + ...|..+.+ +.++.+. ..++|+++||+++..|+.+ ....
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~-g-------~~~g~~~~~-~~~i~~~-------~~ipvia~GGi~s~~di~~~l~~~ 219 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRD-G-------TMKGYDLEL-IKTVSDA-------VSIPVIALGGAGSLDDLVEVALEA 219 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcc-C-------CcCCCCHHH-HHHHHhh-------CCCCEEEECCCCCHHHHHHHHHHc
Confidence 45677788999999999985321 1 123433322 3333322 2589999999999999999 6678
Q ss_pred cchhhhcchhH
Q psy12805 616 GADEIGLSTAP 626 (1429)
Q Consensus 616 GAdavg~gt~~ 626 (1429)
||+.|.+|+++
T Consensus 220 gadgV~vg~a~ 230 (232)
T TIGR03572 220 GASAVAAASLF 230 (232)
T ss_pred CCCEEEEehhh
Confidence 99999999864
No 260
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=94.33 E-value=0.17 Score=56.74 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc
Q psy12805 537 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 616 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG 616 (1429)
-..+..+.+.|++.|++.+..-. ....|..+ ..+.++.+.. .++++++||++|..|+.+++-+|
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~--------g~~~G~d~-~~i~~l~~~~-------~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRD--------GTLSGPNV-EATRELAAAV-------PIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCc--------CCcCCCCH-HHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 45677788889997777644311 11345333 3344444432 48999999999999999999999
Q ss_pred -chhhhcchhHHH
Q psy12805 617 -ADEIGLSTAPLI 628 (1429)
Q Consensus 617 -Adavg~gt~~L~ 628 (1429)
|++|-+|+++|.
T Consensus 213 ~~~gv~vg~a~~~ 225 (233)
T PRK00748 213 AVEGVIVGRALYE 225 (233)
T ss_pred CccEEEEEHHHHc
Confidence 999999997664
No 261
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=94.33 E-value=0.12 Score=65.87 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=75.7
Q ss_pred HHHHhhccCCCCCC--CCCCC--C--cccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHH
Q psy12805 12 EFRLLAEKCQLEVL--GQHEN--T--RKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADC 85 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~--~--~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~ 85 (1429)
...|.|.|.....+ |-||. + -=+|+|||||--.+.-++.... ..-...||+.-+=.
T Consensus 43 ~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~------------------~~f~t~sD~Evil~ 104 (578)
T PLN02549 43 DCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYNHKELREKLKL------------------HKFRTGSDCEVIAH 104 (578)
T ss_pred CeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHh------------------CCCCCCCHHHHHHH
Confidence 35788999875544 67772 1 1368999999866544433221 12246788776543
Q ss_pred HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEE-EeCCEEEEEeecc
Q psy12805 86 AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYV-LKDNVMVMASEVG 162 (1429)
Q Consensus 86 a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~-~~d~~~~~~se~g 162 (1429)
+.. +|-..+.+--||..++++-|. +.+-+.-||.|.||. ||- ++|+.+++|||.-
T Consensus 105 ly~---------------------~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPL-yyg~~~~g~~~fASE~K 162 (578)
T PLN02549 105 LYE---------------------EHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPL-YIGWGLDGSVWFASEMK 162 (578)
T ss_pred HHH---------------------HHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCe-EEEEecCCeEEEEecHH
Confidence 321 122234455699999999985 568888999999999 664 4578999999965
Q ss_pred cc
Q psy12805 163 VY 164 (1429)
Q Consensus 163 ~~ 164 (1429)
.+
T Consensus 163 aL 164 (578)
T PLN02549 163 AL 164 (578)
T ss_pred HH
Confidence 53
No 262
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=94.32 E-value=0.17 Score=58.62 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCcc---------------------c----c
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGAS---------------------S----W 565 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaa---------------------p----~ 565 (1429)
.++++..|..+ ++|+..-.. .++ .|..+.+.|+|+|--.|. |+||.- . .
T Consensus 103 de~~~~~K~~f-~vpfmad~~---~l~-EAlrai~~GadmI~Tt~e-~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~ 176 (287)
T TIGR00343 103 DWTFHIDKKKF-KVPFVCGAR---DLG-EALRRINEGAAMIRTKGE-AGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLA 176 (287)
T ss_pred HHHHHHHHHHc-CCCEEccCC---CHH-HHHHHHHCCCCEEecccc-CCCccHHHHHHHHHHHHHHHHHHhcccchhHHh
Confidence 45677777776 667654411 232 356678899999998887 667750 0 0
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCCCceEEE--EcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 566 TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 566 ~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~Li--asGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
...+..+.|+. .|.++.+.. +++++ +.|||.|+.|+..++-+||+.|-+|++.+-
T Consensus 177 ~~a~~~~~~~e-lLkei~~~~-------~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 177 AVAKELRVPVE-LLLEVLKLG-------KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred hhhcccCCCHH-HHHHHHHhC-------CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 01223454543 345554421 57887 999999999999999999999999886553
No 263
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.24 E-value=0.24 Score=59.95 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccc-cChHHHHHHHHhcCCcEEEEecCCCCCCccccccccc-c-CCChHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSE-VGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKN-A-GLPWELGVAE 581 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e-~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~-~-GiP~~laL~e 581 (1429)
.+++-+.++|.++|+.. |.||+-.. ......+..+.++|+|+|+|.|+-- +..+ - .-+|. -+.+
T Consensus 116 ~~p~l~~~ii~~vr~a~----VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~--------~q~~~sg~~~p~-~l~~ 182 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG----VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLV--------SAEHVSTSGEPL-NLKE 182 (369)
T ss_pred cChHHHHHHHHHHHhcc----eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccch--------hhhccCCCCCHH-HHHH
Confidence 46788899999999862 56665433 2555678889999999999997630 0111 0 11343 2343
Q ss_pred HHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 582 v~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
..+.+ +++||+ |++.|..|+.+++..|||+|.+|+
T Consensus 183 ~i~~~-------~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 183 FIGEL-------DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 33322 588887 999999999999999999985443
No 264
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.22 E-value=0.0065 Score=74.97 Aligned_cols=86 Identities=30% Similarity=0.536 Sum_probs=76.8
Q ss_pred ceEEEccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHH
Q psy12805 1210 GFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQ 1289 (1429)
Q Consensus 1210 gf~kiAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~ 1289 (1429)
-|+++.|...+.+++.+|..||+|+... ...+.++-.+.+|+.|+.+.|.. +||.+..+|.|..++..++|.+++.-
T Consensus 2 ~~~~~~r~~~~~~~~~~r~~~~~e~~~~-~~~~~~~~e~~rc~~c~~~~c~~--~cp~~~~~~~~~~~~~~~~~~~a~~~ 78 (457)
T PRK11749 2 KFLTTPRIPMPRQDAEERAQNFDEVAPG-YTPEEAIEEASRCLQCKDAPCVK--ACPVSIDIPEFIRLIAEGNLKGAAET 78 (457)
T ss_pred CcccccccCcCcCCHHHHhcChHhhcCC-CCHHHHHHHHHHhhCCCCCcccc--cCCCcCCHHHHHHHHHCCCHHHHHHH
Confidence 3788899999999999999999988743 45677888899999999999997 99999999999999999999999999
Q ss_pred HHHhCCCCC
Q psy12805 1290 LLQTNNFPA 1298 (1429)
Q Consensus 1290 ~Le~~G~~~ 1298 (1429)
+++++.|+.
T Consensus 79 ~~~~~p~~~ 87 (457)
T PRK11749 79 ILETNPLPA 87 (457)
T ss_pred HHHhCCchh
Confidence 999998764
No 265
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.16 E-value=0.22 Score=65.72 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCC-CCeEEEEecccc----C--hH---HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh-HH
Q psy12805 509 DLAELIYDLKCANP-NARISVKLVSEV----G--VG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-EL 577 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~-~~pV~VKLv~e~----G--vg---~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~-~l 577 (1429)
-+.++++.+|+..+ +.||.||+.+.. | .. .++..+.++|+|+|.|++. ++..... . ..+-.. ..
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g--~~~~~~~--~-~~~~~~~~~ 677 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG--QVSKDEK--P-VYGRMYQTP 677 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC--CCCcCCC--C-CcCccccHH
Confidence 37788999999874 589999999732 2 11 3667788899999999853 2221110 0 011111 11
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHHH
Q psy12805 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 628 (1429)
Q Consensus 578 aL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L~ 628 (1429)
...++.+. -+++|++.|+|+++.++-+++.-| ||.|++|++++.
T Consensus 678 ~~~~ik~~-------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 678 FADRIRNE-------AGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHHH-------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 11222222 158999999999999999999877 999999997654
No 266
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.2 Score=61.15 Aligned_cols=128 Identities=20% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHhhccCCCCCCC----CCC--CCcc----cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 14 RLLAEKCQLEVLG----QHE--NTRK----CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 14 ~~~~~~~~~~~~~----~~~--~~~r----~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
+.-|-||||-=.. .|| --++ -|||||.+-.-.--|.-+..+- -+ -...|||.-|
T Consensus 74 ~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g---------------~~-f~t~sDsEvl 137 (470)
T COG0034 74 GIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEG---------------AI-FNTTSDSEVL 137 (470)
T ss_pred eeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcC---------------ce-ecCCccHHHH
Confidence 5589999984322 567 1134 6899998754332322222111 11 2467999988
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecccCCCCCCcEEEEeCCEEEEEeeccc
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVGV 163 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~ 163 (1429)
-+.+.. +-| ..++.+-....|+--.|..+++.-.-..+-|..|=||+||.=+=--.|+..++|||+=+
T Consensus 138 l~l~a~---~~~---------~~~~~~a~~~~~~~v~G~ys~v~~~~~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~A 205 (470)
T COG0034 138 LHLLAR---ELD---------EDDIFEAVKEVLRRVKGAYALVALIKDGLIAVRDPNGIRPLVLGKLGDGFYVVASETCA 205 (470)
T ss_pred HHHHHh---hcc---------cccHHHHHHHHHhhcCCcEEEEEEECCeEEEEECCCCCccceeeecCCCCEEEEechhh
Confidence 884421 111 15677777777777788776655443477788899999998333335677899999988
Q ss_pred cccCCC
Q psy12805 164 YDTDPA 169 (1429)
Q Consensus 164 ~~~~~~ 169 (1429)
+|+=-.
T Consensus 206 ld~iGa 211 (470)
T COG0034 206 LDILGA 211 (470)
T ss_pred hhcccc
Confidence 875433
No 267
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.16 E-value=0.25 Score=55.07 Aligned_cols=100 Identities=22% Similarity=0.100 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
.+++.++++..+.. +..+.+-+. +... +..+.+.|+|+|-+++.++.+ .+... ..+.+ +
T Consensus 107 ~~~~~~~~~~~~~~--g~~~~v~v~---~~~e-~~~~~~~g~~~i~~t~~~~~~----------~~~~~-~~~~~----l 165 (217)
T cd00331 107 DEQLKELYELAREL--GMEVLVEVH---DEEE-LERALALGAKIIGINNRDLKT----------FEVDL-NTTER----L 165 (217)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEEC---CHHH-HHHHHHcCCCEEEEeCCCccc----------cCcCH-HHHHH----H
Confidence 46777777776654 333333321 3333 456788999999998776542 12222 22222 2
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.+. +...+++++.|||.++.|+.+++.+||+.|-+|++.+-
T Consensus 166 ~~~-~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 166 APL-IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHh-CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 221 22358999999999999999999999999999996553
No 268
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.11 E-value=0.13 Score=59.15 Aligned_cols=76 Identities=24% Similarity=0.160 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCcEEEEecCCC-CCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH-
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA- 613 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~G-GTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl- 613 (1429)
....+..+.+.|++.|++.+.+- || .-|..+. .+.++.+. ..++||++||+++..|+..++
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~---------~~G~d~~-~i~~~~~~-------~~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGT---------MKGYDLE-LLKSFRNA-------LKIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCC---------cCCCCHH-HHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHH
Confidence 44567778899999999986542 12 3454443 33444332 268999999999999999998
Q ss_pred HhcchhhhcchhHHH
Q psy12805 614 LLGADEIGLSTAPLI 628 (1429)
Q Consensus 614 aLGAdavg~gt~~L~ 628 (1429)
..|+++|-+|+++++
T Consensus 217 ~~GvdgVivg~a~~~ 231 (258)
T PRK01033 217 NLGADAAAAGSLFVF 231 (258)
T ss_pred HCCCCEEEEcceeee
Confidence 899999999997766
No 269
>KOG1799|consensus
Probab=94.10 E-value=0.11 Score=60.78 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccc-cChHHHHHHHHhcCCcEEEEe-------cCCC--------CCCccccccc-
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSE-VGVGVVASGVAKGKAEHIVIS-------GHDG--------GTGASSWTGI- 568 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e-~Gvg~vA~~~akaGaD~I~Is-------G~~G--------GTgaap~~~~- 568 (1429)
+++-+.+....++... .+|+.-|+.++ .++-.+|+.+.+.|+..|.-. |.+. -+|.+..-..
T Consensus 257 ~p~v~~EvC~Wi~A~~-~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S 335 (471)
T KOG1799|consen 257 CPIVDCEVCGWINAKA-TIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYS 335 (471)
T ss_pred ChhhhHHHhhhhhhcc-ccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCcc
Confidence 4555556666666554 67888888874 355556666666666655311 1111 1111111000
Q ss_pred cccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccce
Q psy12805 569 KNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIA 648 (1429)
Q Consensus 569 ~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~gia 648 (1429)
-.+-.| +|++.+...... +. ..+|.+.|||.|+.|.+..++||++.+.+.|+.++-
T Consensus 336 ~~AvRP--IAl~~V~~IA~~--m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~------------------- 391 (471)
T KOG1799|consen 336 YKAVRP--IALAKVMNIAKM--MK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMH------------------- 391 (471)
T ss_pred ccccch--HHHHHHHHHHHH--hh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHhc-------------------
Confidence 011223 344455443222 22 578999999999999999999999999998866651
Q ss_pred ecCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q psy12805 649 TQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695 (1429)
Q Consensus 649 tqd~~lr~~~~g~~e~v~ny~~~l~~eLr~iMa~mGi~sl~ElvGrs 695 (1429)
+ . ...+.+..||+..|...|+++|+|..|.+
T Consensus 392 --~----------~----~~V~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 392 --G----------Y----GHVKTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred --C----------c----chHHHHHHHHHHHHHHcCchhhhhccCcc
Confidence 1 1 12556678999999999999999998877
No 270
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.09 E-value=0.3 Score=56.05 Aligned_cols=76 Identities=21% Similarity=0.157 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
....+..+.++|+|.|++++.+-. | ..-|..+.+ +.++.+. ..++|+++||+++..|+.+++.+
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~-g-------~~~g~~~~~-~~~i~~~-------~~ipvia~GGi~s~~di~~~~~~ 220 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKD-G-------TKSGYDLEL-TKAVSEA-------VKIPVIASGGAGKPEHFYEAFTK 220 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcc-c-------CCCCCCHHH-HHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 445677788999999999765421 0 023333332 3333332 25899999999999999999999
Q ss_pred c-chhhhcchhHH
Q psy12805 616 G-ADEIGLSTAPL 627 (1429)
Q Consensus 616 G-Adavg~gt~~L 627 (1429)
| |+.|.+|++.+
T Consensus 221 g~~dgv~~g~a~~ 233 (254)
T TIGR00735 221 GKADAALAASVFH 233 (254)
T ss_pred CCcceeeEhHHHh
Confidence 9 99998888544
No 271
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=93.83 E-value=0.18 Score=65.14 Aligned_cols=117 Identities=23% Similarity=0.248 Sum_probs=75.8
Q ss_pred HHHHHhhccCCCCCC--CCCCCC----cccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 11 EEFRLLAEKCQLEVL--GQHENT----RKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~----~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
....+.|.|+++.-+ |-||.. --.|.|||||.-...-++-..+. | ..-...||+..+-
T Consensus 42 ~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~---------g-------~~~~~~sD~Evi~ 105 (628)
T TIGR03108 42 PGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYNFQELVAELQAL---------G-------HVFRTRSDTEVIV 105 (628)
T ss_pred CCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhc---------C-------CccCCCChHHHHH
Confidence 346788999987643 677721 13679999998665443322210 0 1113467877654
Q ss_pred HHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeCCEEEEEeecc
Q psy12805 85 CAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKDNVMVMASEVG 162 (1429)
Q Consensus 85 ~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g 162 (1429)
.+.. .| -..+.+--+|..++++-|. +.+-+.-||.|.||.=|+.+.|+.+++|||.-
T Consensus 106 ~~~~-----~~----------------g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~ 164 (628)
T TIGR03108 106 HAWE-----EW----------------GEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELK 164 (628)
T ss_pred HHHH-----HH----------------HHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHH
Confidence 4331 12 2233445589999999774 46889999999999944445678899999976
Q ss_pred cc
Q psy12805 163 VY 164 (1429)
Q Consensus 163 ~~ 164 (1429)
.+
T Consensus 165 al 166 (628)
T TIGR03108 165 AL 166 (628)
T ss_pred HH
Confidence 43
No 272
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.80 E-value=0.16 Score=58.96 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=31.3
Q ss_pred ceEEE--EcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 594 RVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 594 ~V~Li--asGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+++++ +.|||.|+.|+..++.+||+.|-+|++.+-
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 57887 999999999999999999999999986654
No 273
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.79 E-value=0.34 Score=53.54 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC--hHHHHHHHHHHHHhcCCC
Q psy12805 515 YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLR 592 (1429)
Q Consensus 515 ~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP--~~laL~ev~q~L~~~gLR 592 (1429)
.++|+..|+..|++..- ... .+..+.++|+|+|.++-.. .|.. +-+.+ -...+.++.+.
T Consensus 87 ~~~r~~~~~~~ig~s~~---s~e-~a~~a~~~Gadyi~~g~v~-~t~~-------k~~~~~~g~~~l~~~~~~------- 147 (201)
T PRK07695 87 RSVREKFPYLHVGYSVH---SLE-EAIQAEKNGADYVVYGHVF-PTDC-------KKGVPARGLEELSDIARA------- 147 (201)
T ss_pred HHHHHhCCCCEEEEeCC---CHH-HHHHHHHcCCCEEEECCCC-CCCC-------CCCCCCCCHHHHHHHHHh-------
Confidence 34454445667777521 232 3566778999999764322 1211 11221 11223333222
Q ss_pred CceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 593 SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 593 ~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.++++++.||| +..++..++.+||+.|+++++.+-
T Consensus 148 ~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 148 LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 25899999999 899999999999999999986653
No 274
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.77 E-value=0.34 Score=57.27 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
--..|+.++++|+-.|--=+..-||| .|+.-...+..+.+. ..|+|++++||.++.|+++|+-|
T Consensus 207 d~~~a~~l~~~g~~avmPl~~pIGsg---------~gv~~p~~i~~~~e~-------~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 207 DPIAAKRLEDAGAVAVMPLGAPIGSG---------LGIQNPYTIRLIVEG-------ATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred CHHHHHHHHhcCCEEEeeccccccCC---------CCCCCHHHHHHHHHc-------CCCcEEEeCCCCCHHHHHHHHHc
Confidence 34567888999994444324444443 334444555544443 36999999999999999999999
Q ss_pred cchhhhcchhH
Q psy12805 616 GADEIGLSTAP 626 (1429)
Q Consensus 616 GAdavg~gt~~ 626 (1429)
|||+|.+.|+.
T Consensus 271 GadgVL~nSaI 281 (326)
T PRK11840 271 GCDGVLMNTAI 281 (326)
T ss_pred CCCEEEEccee
Confidence 99999888744
No 275
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.53 E-value=0.28 Score=59.38 Aligned_cols=100 Identities=17% Similarity=0.057 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCC--ChHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL--PWELGVAET 582 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~Gi--P~~laL~ev 582 (1429)
.+++.+.++|..+|+. .++|.+++.+ ...-..+..+.++|+|+|+++++.-. ..|.+- -|.. +.+.
T Consensus 115 ~~p~l~~~iv~~~~~~--~V~v~vr~~~-~~~~e~a~~l~eaGvd~I~vhgrt~~--------~~h~~~~~~~~~-i~~~ 182 (368)
T PRK08649 115 IKPELITERIAEIRDA--GVIVAVSLSP-QRAQELAPTVVEAGVDLFVIQGTVVS--------AEHVSKEGEPLN-LKEF 182 (368)
T ss_pred CCHHHHHHHHHHHHhC--eEEEEEecCC-cCHHHHHHHHHHCCCCEEEEeccchh--------hhccCCcCCHHH-HHHH
Confidence 5678899999999985 4555555532 23556788899999999999875211 111111 1222 2222
Q ss_pred HHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 583 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 583 ~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
.+ +. .++||+ |++.|..++.+++..|||+|-+|.
T Consensus 183 ik---~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 183 IY---EL----DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred HH---HC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 22 22 478888 999999999999999999986654
No 276
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=93.51 E-value=0.22 Score=63.32 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHhhccCCCCCC--CCCCC--C--cccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHH
Q psy12805 11 EEFRLLAEKCQLEVL--GQHEN--T--RKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAAD 84 (1429)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~--~--~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d 84 (1429)
....|.|.|....-+ |-||. + --+|++||||---+--++....+ ..-...||+.-+-
T Consensus 42 ~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~-----------------~~f~t~sD~Evil 104 (554)
T PRK09431 42 DNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDK-----------------YAFQTGSDCEVIL 104 (554)
T ss_pred CCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhcc-----------------CCcCCCCHHHHHH
Confidence 345788999875543 56662 1 13678999998554333322210 0113467776653
Q ss_pred HHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeC-CEEEEEeec
Q psy12805 85 CAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKD-NVMVMASEV 161 (1429)
Q Consensus 85 ~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d-~~~~~~se~ 161 (1429)
.+.. +|-..+.+--+|..++++-|. +.+-+.-||.|.||. ||-.++ +.+++|||.
T Consensus 105 ~ly~---------------------~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPL-yy~~~~~~~~~faSE~ 162 (554)
T PRK09431 105 ALYQ---------------------EKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPL-YYGYDEHGNLYFASEM 162 (554)
T ss_pred HHHH---------------------HHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcce-EEEEeCCCeEEEecch
Confidence 3221 122233445699999999998 568888899999999 665554 899999996
Q ss_pred cc
Q psy12805 162 GV 163 (1429)
Q Consensus 162 g~ 163 (1429)
-.
T Consensus 163 ka 164 (554)
T PRK09431 163 KA 164 (554)
T ss_pred HH
Confidence 44
No 277
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=93.29 E-value=0.1 Score=60.61 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=53.3
Q ss_pred HHhhccCCCCCCCCCC--CCcc--------cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 14 RLLAEKCQLEVLGQHE--NTRK--------CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~r--------~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
-++|=|.-|-..=-.- |||+ +.+|||.|..++..+ +..+. ..|..||..+
T Consensus 74 ~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~------------------~~~~~--~~G~TDSE~~ 133 (271)
T PF13230_consen 74 FLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDIL------------------DDRYQ--PVGTTDSEHA 133 (271)
T ss_dssp EEEEE------------SS-EE----ETTEEEEEEEEETTGGGGH------------------HHHHT----S--HHHHH
T ss_pred EEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccC------------------ccccc--cCCCcHHHHH
Confidence 4689999875321111 7776 789999998776332 11222 4588999998
Q ss_pred HHHHHhhCccccccC-CCCCHHHHHHHHHHhhccCCCCcceEEEEEcCCeEEEecc
Q psy12805 84 DCAVMTMVPEAWQND-GTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILD 138 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~-~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg~~~ga~ld 138 (1429)
=.-++--+.+.+... +.+..-.+..-++...+-+ .|++-+++|||+.+-|.-+
T Consensus 134 F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~N~~lsDG~~l~a~~~ 187 (271)
T PF13230_consen 134 FCLLLDQLRDRGPDAPPALEELFEALRELAKEINE--YGSLNFLLSDGERLFAHRY 187 (271)
T ss_dssp HHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SS--SEEEEEEEE-SS-EEEEEE
T ss_pred HHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhcc--CeeEEEEEECCceEEEEEc
Confidence 886666666666422 1122222334455544433 4889999999999999776
No 278
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.98 E-value=0.6 Score=57.44 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred hCCCCccccccccchhhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCC-eeEEEecEEEEeccc
Q psy12805 1262 SHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNS-EKIFKCDLVLLAMGF 1338 (1429)
Q Consensus 1262 ~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gs-e~~ieaDlVLlAiG~ 1338 (1429)
.+||+|-. +|.+.+-+.+..+.+++.+.++++| +..+.++.+++.. ++++..+...+. +..+.+|.||+|+|.
T Consensus 245 ~~g~~v~E-~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~---~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 245 ATGLTLCE-LPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE---GNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHCCCEEe-CCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee---CCeEEEEEecCCccceEECCEEEEccCC
Confidence 46888721 2222233344588889999999888 5667788777542 344443332332 357999999999996
Q ss_pred cCchhhhhhcc--------Ccccc--------------------CCCCEEecCCCCcc-----CCCCEEEeCCCCCCCCc
Q psy12805 1339 LGPERYIANEL--------DLTLD--------------------PRSNYSTVEKTYLT-----TVPRVYAAGDCRRGQSL 1385 (1429)
Q Consensus 1339 ~pp~~~Lle~l--------GLeld--------------------~~G~I~VD~~~~~T-----SvPgVFAAGD~a~g~~l 1385 (1429)
- -...|++.. ++++. ..| |.||+ .++. ..+++||+|-+..+...
T Consensus 321 w-~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~G-V~~d~-~lrp~~~g~~~~Nl~a~G~vL~G~d~ 397 (419)
T TIGR03378 321 F-FSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFG-VKTDA-QLRPSRGGQTIENLYAIGAVLGGYDP 397 (419)
T ss_pred C-cCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcC-ceEcc-ccCccCCCcccccceEechhhcCCCh
Confidence 5 123343332 23331 012 67776 5662 28999999999887765
Q ss_pred HH------HHHHHHHHHHHHH
Q psy12805 1386 VV------WAISEGRQAAREI 1400 (1429)
Q Consensus 1386 vv------~Ai~qGr~AA~nI 1400 (1429)
+. .|+..|-.||++|
T Consensus 398 ~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 398 IFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred HhcCCCchhHHHHHHHHHHhh
Confidence 54 4777777777765
No 279
>PRK12831 putative oxidoreductase; Provisional
Probab=92.91 E-value=0.017 Score=71.59 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=71.5
Q ss_pred EccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHh
Q psy12805 1214 YSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQT 1293 (1429)
Q Consensus 1214 iAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~ 1293 (1429)
+.|-..|.++..+|..+++|+.. ....+.+...+++|+.|..|.|.. +||++..+|.|..++..++|.+++..++++
T Consensus 6 ~~r~~~~~~~~~~r~~~~~e~~~-~~~~~~~~~ea~rc~~c~~~~C~~--~CP~~~~i~~~~~~~~~~~~~~a~~~~~~~ 82 (464)
T PRK12831 6 KKRVPVREQDPEVRATNFEEVCL-GYNEEEAVKEASRCLQCKKPKCVK--GCPVSINIPGFISKLKEGDFEEAAKIIAKY 82 (464)
T ss_pred cCCCCcccCCHHHHhcChhhhcC-CCCHHHHHHHHHhhcCCCCCchhh--hCCCCCCHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34556788889999999999864 346677888999999999999997 999999999999999999999999999999
Q ss_pred CCCCC
Q psy12805 1294 NNFPA 1298 (1429)
Q Consensus 1294 ~G~~~ 1298 (1429)
|.|+.
T Consensus 83 np~p~ 87 (464)
T PRK12831 83 NALPA 87 (464)
T ss_pred CCchh
Confidence 98664
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.86 E-value=0.83 Score=50.41 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEe-cCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~Is-G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
..+.++++..++. +.++.+-+......-..+..+.+.|+|+|.+. |..+. .++.++...+.+..+.+
T Consensus 89 ~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~----------~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 89 ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ----------AKGQNPFEDLQTILKLV 156 (206)
T ss_pred HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc----------cCCCCCHHHHHHHHHhc
Confidence 4566677777765 57888765322123334555678899999874 22221 22223333444444432
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
..+.+.++||| +..++..++..||+.+.+|++.+
T Consensus 157 ------~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 157 ------KEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred ------CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 23567789999 77888889999999999998643
No 281
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.78 E-value=0.29 Score=56.18 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-..|....+.|+|.|.+.+.++.. .-+-+-...+.++.+.. .++|+++|||++..|+.+++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~---------~~~~~n~~~i~~i~~~~-------~~pv~~~GGi~s~~d~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS---------EGRTTMIDVVERTAETV-------FIPLTVGGGIKSIEDVDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc---------ccChhhHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHH
Confidence 55667888888999999999887541 01112223334443332 589999999999999999999
Q ss_pred hcchhhhcchhHHH
Q psy12805 615 LGADEIGLSTAPLI 628 (1429)
Q Consensus 615 LGAdavg~gt~~L~ 628 (1429)
+||+.+.+||..+-
T Consensus 95 ~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 95 AGADKVSINTAAVK 108 (254)
T ss_pred cCCCEEEEChhHhh
Confidence 99999999986543
No 282
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.74 E-value=1.4 Score=50.87 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
.+|+..+++..+|+.. ...+.=+.+......+..-+..+ -.+|.+-...|-||... ...-+...-+.++.+
T Consensus 125 p~ee~~~~~~~~~~~g--l~~i~lv~P~T~~eri~~i~~~~-~gfiy~vs~~G~TG~~~-----~~~~~~~~~i~~lr~- 195 (256)
T TIGR00262 125 PLEESGDLVEAAKKHG--VKPIFLVAPNADDERLKQIAEKS-QGFVYLVSRAGVTGARN-----RAASALNELVKRLKA- 195 (256)
T ss_pred ChHHHHHHHHHHHHCC--CcEEEEECCCCCHHHHHHHHHhC-CCCEEEEECCCCCCCcc-----cCChhHHHHHHHHHh-
Confidence 3477788888888763 44455555555554443333322 22444433446666431 111222222333322
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
. .+.+|++.|||+|+.|+.+++.+|||.|-+|++.+-.+
T Consensus 196 ---~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 196 ---Y---SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred ---h---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 2 24589999999999999999999999999999765433
No 283
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.68 E-value=0.49 Score=54.07 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=60.1
Q ss_pred ceEEEccccccccHHHHHHhCCCCccc---------c--------ccccchhhccchHHHHHHHHHHhCCCCCC-cEEEE
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPLGN---------I--------IPKWNDLIYHNNWSEALNQLLQTNNFPAG-IKTVK 1304 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V~~---------i--------Lp~~d~lvf~~e~~~al~~~Le~~G~~~g-v~v~~ 1304 (1429)
+++|||||..|+..+.-+++.|++|.. + .|.+...+...++.+.+.+.++..++..- .++..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~ 81 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVIK 81 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEEE
Confidence 589999999999999998888888821 1 12222223335777888888877773311 34444
Q ss_pred EEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCc
Q psy12805 1305 VEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGP 1341 (1429)
Q Consensus 1305 Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp 1341 (1429)
+++ .+..+... ..+ ..++.+|.|++|+|..|.
T Consensus 82 v~~---~~~~~~v~-~~~-~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 82 VDL---SDRPFKVK-TGD-GKEYTAKAVIIATGASAR 113 (300)
T ss_pred EEe---cCCeeEEE-eCC-CCEEEeCEEEECCCCCcc
Confidence 433 23333332 222 347999999999998853
No 284
>PRK08275 putative oxidoreductase; Provisional
Probab=92.65 E-value=0.18 Score=64.19 Aligned_cols=50 Identities=30% Similarity=0.362 Sum_probs=42.2
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-CCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-GQSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|.|.||. .++|++||+||||||+. +..++..|+-.|+.|+.++..++...
T Consensus 357 Ggi~~d~-~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 357 SGVWVNE-KAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred CcEEECC-CCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5588886 78999999999999964 45667789999999999999998654
No 285
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=92.46 E-value=0.35 Score=61.95 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=73.4
Q ss_pred HHHHhhccCCCCC--CCCCCC--C--cccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHH
Q psy12805 12 EFRLLAEKCQLEV--LGQHEN--T--RKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADC 85 (1429)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~--~--~r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~ 85 (1429)
...|.|.|..+.- .|-||. + --+|+|||||--.+--++-..++- ..-...||+.-+=.
T Consensus 48 ~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g----------------~~f~t~sD~Evil~ 111 (586)
T PTZ00077 48 YNILAHERLAIVDLSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEG----------------YKFSSNSDCEIIGH 111 (586)
T ss_pred cEEEEeccceecCCCCCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcC----------------CcCCCCCHHHHHHH
Confidence 3578999997653 367772 1 137899999986553332222110 01134678765543
Q ss_pred HHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEE-eCCEEEEEeecc
Q psy12805 86 AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVL-KDNVMVMASEVG 162 (1429)
Q Consensus 86 a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~-~d~~~~~~se~g 162 (1429)
+.. .|.. . .+.+--+|..++++-|. +.+-+.-||.|.||. ||-. .|+.+++|||.-
T Consensus 112 ly~-----~~G~--------~-------~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPL-yy~~~~~g~~~faSE~k 170 (586)
T PTZ00077 112 LYK-----EYGP--------K-------DFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPL-YIGYAKDGSIWFSSELK 170 (586)
T ss_pred HHH-----HhCH--------H-------HHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCe-EEEEecCCeEEEEecHH
Confidence 331 1211 1 23344599999999886 568888899999999 6654 678999999965
Q ss_pred c
Q psy12805 163 V 163 (1429)
Q Consensus 163 ~ 163 (1429)
.
T Consensus 171 a 171 (586)
T PTZ00077 171 A 171 (586)
T ss_pred H
Confidence 4
No 286
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.33 E-value=0.022 Score=70.66 Aligned_cols=90 Identities=50% Similarity=1.056 Sum_probs=78.5
Q ss_pred ccccceEEEccCCCCCcCCccCccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHH
Q psy12805 1206 DKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSE 1285 (1429)
Q Consensus 1206 ~k~~gf~kiAtGs~P~~p~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~ 1285 (1429)
.|+.+|+.+.|-..|..|.++|+.+++|+..-. ..+.+.-..+||+.|..+.|.. +||.+..+|.|..++..++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~a~rc~~c~~~~C~~--~CP~~~~~~~~~~~~~~~~~~~ 78 (471)
T PRK12810 2 GKPTGFLEYDRVDPKKRPVAERIKDFKEFYEPF-SEEQAKIQAARCMDCGIPFCHW--GCPVHNYIPEWNDLVYRGRWEE 78 (471)
T ss_pred CCCCccccccccCcccCCHHHHHhchHhhhccc-CHHHHHHHHHhccCCCCCcccc--cCCCCCcHHHHHHHHHCCCHHH
Confidence 356678888888899999999999999887753 4677888889999999999997 9999999999999999999999
Q ss_pred HHHHHHHhCCCCC
Q psy12805 1286 ALNQLLQTNNFPA 1298 (1429)
Q Consensus 1286 al~~~Le~~G~~~ 1298 (1429)
+++-++++|.|+.
T Consensus 79 a~~~~~~~~p~~~ 91 (471)
T PRK12810 79 AAERLHQTNNFPE 91 (471)
T ss_pred HHHHHHHhCChhH
Confidence 9999999987664
No 287
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.32 E-value=1.1 Score=56.33 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..++++|+|+|.|+-..|.+- -....+.++.+.. ..+.|++ |.+.|..|+..++.+||
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~------------~~~~~i~~ik~~~------~~~~v~a-G~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSI------------YQIDMIKKLKSNY------PHVDIIA-GNVVTADQAKNLIDAGA 304 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCch------------HHHHHHHHHHhhC------CCceEEE-CCcCCHHHHHHHHHcCC
Confidence 467779999999999998766531 0122334333321 1466666 99999999999999999
Q ss_pred hhhh
Q psy12805 618 DEIG 621 (1429)
Q Consensus 618 davg 621 (1429)
|++-
T Consensus 305 d~I~ 308 (495)
T PTZ00314 305 DGLR 308 (495)
T ss_pred CEEE
Confidence 9873
No 288
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.28 E-value=0.67 Score=50.37 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCCe-EEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANPNAR-ISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~p-V~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
+.+.++.+|+..|..+ |.|.. .--..+..+.++|+|+|.++... | .-+.++.+.|..
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv----~~~ee~~ea~~~g~d~I~lD~~~----------------~--~~~~~~v~~l~~ 123 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV----ENLEEAEEALEAGADIIMLDNMS----------------P--EDLKEAVEELRE 123 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE----SSHHHHHHHHHTT-SEEEEES-C----------------H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc----CCHHHHHHHHHhCCCEEEecCcC----------------H--HHHHHHHHHHhh
Confidence 6667888888887765 66653 33445777899999999999873 2 336667776655
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.+. ++.|.+||||. ...+......|+|.+++|+.++-
T Consensus 124 ~~~--~v~ie~SGGI~-~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 124 LNP--RVKIEASGGIT-LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp HTT--TSEEEEESSSS-TTTHHHHHHTT-SEEEECHHHHS
T ss_pred cCC--cEEEEEECCCC-HHHHHHHHhcCCCEEEcChhhcC
Confidence 554 49999999996 77788889999999998885543
No 289
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.26 E-value=0.36 Score=54.74 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=54.2
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCC-CCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GG-Tgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
..-.+|..+.++|+|.|.+.+.++. ++ -+. -...+.++.+.+ +++|+++|||++..|+.+++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~---------~~~-~~~~i~~i~~~~-------~~pv~~~GGI~s~~d~~~~l 90 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG---------RET-MLDVVERVAEEV-------FIPLTVGGGIRSLEDARRLL 90 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc---------Ccc-cHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHH
Confidence 4566788889999998888776632 11 112 122233333321 58999999999999999999
Q ss_pred HhcchhhhcchhHH
Q psy12805 614 LLGADEIGLSTAPL 627 (1429)
Q Consensus 614 aLGAdavg~gt~~L 627 (1429)
..||+.+.+|+..+
T Consensus 91 ~~G~~~v~ig~~~~ 104 (243)
T cd04731 91 RAGADKVSINSAAV 104 (243)
T ss_pred HcCCceEEECchhh
Confidence 99999999888655
No 290
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=92.13 E-value=0.78 Score=52.01 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=52.0
Q ss_pred hHHHHHHHHhcCCcEEEEec--CCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 536 VGVVASGVAKGKAEHIVISG--HDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG--~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
.-..+..+.+.|+.-|++.+ ++|. ..|+...+ +..+.+.. +++++++||+++..|+..+.
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt----------~~G~d~~~-~~~l~~~~-------~~~viasGGv~~~~Dl~~l~ 210 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGT----------MQGPDLEL-LKQLAEAV-------NIPVIASGGVRSLEDLRELK 210 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTT----------SSS--HHH-HHHHHHHH-------SSEEEEESS--SHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCC----------cCCCCHHH-HHHHHHHc-------CCCEEEecCCCCHHHHHHHH
Confidence 44567778889999888874 4443 44566544 45554443 68999999999999999999
Q ss_pred HhcchhhhcchhHH
Q psy12805 614 LLGADEIGLSTAPL 627 (1429)
Q Consensus 614 aLGAdavg~gt~~L 627 (1429)
..|++++-+|++++
T Consensus 211 ~~G~~gvivg~al~ 224 (229)
T PF00977_consen 211 KAGIDGVIVGSALH 224 (229)
T ss_dssp HTTECEEEESHHHH
T ss_pred HCCCcEEEEehHhh
Confidence 99999998888664
No 291
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=91.84 E-value=0.63 Score=53.09 Aligned_cols=77 Identities=25% Similarity=0.200 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
....+|....+.|+|.|.|-+-++-.| .+ +-...+.++.+.+ .++|+++|||||..|+-+++.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g---------~~-~n~~~i~~i~~~~-------~~pv~vgGGirs~edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFG---------RG-SNRELLAEVVGKL-------DVKVELSGGIRDDESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCC---------CC-ccHHHHHHHHHHc-------CCCEEEcCCCCCHHHHHHHHH
Confidence 455678888889999888777653211 11 2223344444432 578999999999999999999
Q ss_pred hcchhhhcchhHHH
Q psy12805 615 LGADEIGLSTAPLI 628 (1429)
Q Consensus 615 LGAdavg~gt~~L~ 628 (1429)
+||+-+++||..+-
T Consensus 96 ~Ga~kvviGs~~l~ 109 (241)
T PRK14024 96 TGCARVNIGTAALE 109 (241)
T ss_pred CCCCEEEECchHhC
Confidence 99999999986553
No 292
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=91.71 E-value=0.21 Score=64.32 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=36.8
Q ss_pred CCccCCCCEEEeCCCCC--CCCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1365 TYLTTVPRVYAAGDCRR--GQSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1365 ~~~TSvPgVFAAGD~a~--g~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
.++|++||+||+|||+. ...+...+..+|+.|+.++..++..
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999974 3567888999999999999999865
No 293
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.68 E-value=0.035 Score=72.94 Aligned_cols=82 Identities=30% Similarity=0.549 Sum_probs=71.1
Q ss_pred EccCCCCCcCCccCccc-hHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHH
Q psy12805 1214 YSRETAPYRPAEKRLKD-WDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQ 1292 (1429)
Q Consensus 1214 iAtGs~P~~p~~~rv~D-~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le 1292 (1429)
+.|...|.+|+.+|..+ ++|+... ...+.+...+.||+.|+.+.|.. +||....+|.|..++..++|.++++.+++
T Consensus 294 ~~r~~~~~~~~~~r~~~~f~ev~~~-~~~~~a~~ea~rC~~c~~~~C~~--~Cp~~~~i~~~~~~~~~g~~~~a~~~~~~ 370 (752)
T PRK12778 294 IERVPMPELDPEYRAHNRFEEVNLG-LTKEQAMTEAKRCLDCKNPGCVE--GCPVGIDIPRFIKNIERGNFLEAAKILKE 370 (752)
T ss_pred cCcCCcccCCHHHHhcCChhhccCC-CCHHHHHHHHHHhhcCCCCcccc--cCcCCCCHHHHHHHHHCCCHHHHHHHHHh
Confidence 55667888898999999 8887543 35667888999999999999996 99999999999999999999999999999
Q ss_pred hCCCCC
Q psy12805 1293 TNNFPA 1298 (1429)
Q Consensus 1293 ~~G~~~ 1298 (1429)
+|.|+.
T Consensus 371 ~~p~p~ 376 (752)
T PRK12778 371 TSALPA 376 (752)
T ss_pred hCCchh
Confidence 998764
No 294
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.61 E-value=1.2 Score=48.87 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEe-cCCCCCCccccccccccC-CChHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAG-LPWELGVAETHQV 585 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~Is-G~~GGTgaap~~~~~~~G-iP~~laL~ev~q~ 585 (1429)
+.+.++++.+|+. +.++.+=+. .......+..+.+.|+|++.+. +..+++ .| ......+.++.+.
T Consensus 90 ~~~~~~i~~~~~~--g~~~~v~~~-~~~t~~e~~~~~~~~~d~v~~~~~~~~~~----------~~~~~~~~~i~~~~~~ 156 (202)
T cd04726 90 STIKKAVKAAKKY--GKEVQVDLI-GVEDPEKRAKLLKLGVDIVILHRGIDAQA----------AGGWWPEDDLKKVKKL 156 (202)
T ss_pred HHHHHHHHHHHHc--CCeEEEEEe-CCCCHHHHHHHHHCCCCEEEEcCcccccc----------cCCCCCHHHHHHHHhh
Confidence 4566777777764 466665422 2222223333777899999883 333332 11 2233444444332
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
.+++++++|||+ ..++..++..|||.+.+|++.
T Consensus 157 -------~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 157 -------LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred -------cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehh
Confidence 258899999996 899999999999999999864
No 295
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=91.53 E-value=1.2 Score=52.62 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhc---CCcEEEEecCCCCCCccccccccccCCChHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKG---KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~aka---GaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
++.+.++..|+..| ..+|.|-.-.....-..|..+.++ ++|.|.+|..++..| . ....+.++.+
T Consensus 169 ~~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G-----------~-~~~~~~~~~~ 236 (302)
T cd01571 169 DQVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRG-----------V-FRYLIREVRW 236 (302)
T ss_pred hHHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCC-----------C-HHHHHHHHHH
Confidence 46677888888777 467766543221111234445555 599999998864322 2 2344567777
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
.|...+.. ++.|++|||| |...+......|+|.+++|+..+
T Consensus 237 ~l~~~g~~-~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 237 ALDIRGYK-HVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred HHHhCCCC-CeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 78766543 5889999999 78889999999999999999554
No 296
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.45 E-value=0.52 Score=53.97 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=56.4
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-.+|..+.+.|++.|.|.+.+... ..-+.. ...+.++.+.. .++|+++|||+|..|+.+++.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~--------~~~~~~-~~~i~~i~~~~-------~ipv~~~GGi~s~~~~~~~l~ 94 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS--------EGRDTM-LDVVERVAEQV-------FIPLTVGGGIRSVEDARRLLR 94 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc--------ccCcch-HHHHHHHHHhC-------CCCEEeeCCCCCHHHHHHHHH
Confidence 45567888889999999999887420 011222 23334443332 589999999999999999999
Q ss_pred hcchhhhcchhHHH
Q psy12805 615 LGADEIGLSTAPLI 628 (1429)
Q Consensus 615 LGAdavg~gt~~L~ 628 (1429)
.||+.|.+|+..+-
T Consensus 95 ~Ga~~Viigt~~l~ 108 (253)
T PRK02083 95 AGADKVSINSAAVA 108 (253)
T ss_pred cCCCEEEEChhHhh
Confidence 99999999885543
No 297
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=91.44 E-value=0.73 Score=56.92 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEe-ccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKL-VSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKL-v~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
.+.+.++..|+. +.++.+-+ .++..+ ..+..+.+.|+|+|.+. . |.++.. .+......+.++.+.
T Consensus 95 ~~~~~i~~a~~~--G~~~~~g~~s~~t~~-e~~~~a~~~GaD~I~~~-p-g~~~~~-------~~~~~~~~l~~l~~~-- 160 (430)
T PRK07028 95 TIEDAVRAARKY--GVRLMADLINVPDPV-KRAVELEELGVDYINVH-V-GIDQQM-------LGKDPLELLKEVSEE-- 160 (430)
T ss_pred HHHHHHHHHHHc--CCEEEEEecCCCCHH-HHHHHHHhcCCCEEEEE-e-ccchhh-------cCCChHHHHHHHHhh--
Confidence 356677777764 45666643 322222 23466778899999764 2 222111 111111223322221
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHhccccccccccCCCCccceecCHHHHhhcC-CcHHHHH
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA-GKPEHVI 666 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~algc~~~r~c~~~~cP~giatqd~~lr~~~~-g~~e~v~ 666 (1429)
..++|++.||| +...+..++..||+.+.+|++.+-+- =|... -..+++.+. .-+..+.
T Consensus 161 -----~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~------------d~~~~---~~~l~~~i~~~~~~~~~ 219 (430)
T PRK07028 161 -----VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSA------------DVTEA---ARKIREAIDSGKPVKID 219 (430)
T ss_pred -----CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCC------------CHHHH---HHHHHHHHhccCCcccc
Confidence 24889999999 57889999999999999998644210 01101 112333332 2245556
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhhc
Q psy12805 667 NYLFMLAEEVRTHMAKLGIRKFADLV 692 (1429)
Q Consensus 667 ny~~~l~~eLr~iMa~mGi~sl~Elv 692 (1429)
.|++.+..++.+.++.+.-.++.|..
T Consensus 220 ~~~~~~~~~~~~~l~~~~t~~i~d~l 245 (430)
T PRK07028 220 KFKKSLDEEIREIFMQVSTPNISDAM 245 (430)
T ss_pred ccccCCCHHHHHHhcCCCCCcHHhhh
Confidence 67777777777777777777777764
No 298
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.44 E-value=1.2 Score=50.97 Aligned_cols=75 Identities=23% Similarity=0.110 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCcEEEEecCCC-CCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 537 GVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~G-GTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
-..+..+.+.|++.|++.+.+- |+ .-|..+. .+.++.+. ..++++++||+++..|+..++..
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~---------~~g~d~~-~i~~~~~~-------~~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGT---------KNGYDLE-LTRAVSDA-------VNVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCC---------CCCcCHH-HHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHh
Confidence 3456677889999999977542 22 1234442 33444332 25899999999999999999865
Q ss_pred -cchhhhcchhHHH
Q psy12805 616 -GADEIGLSTAPLI 628 (1429)
Q Consensus 616 -GAdavg~gt~~L~ 628 (1429)
||+++-+|++++.
T Consensus 219 ~G~~gvivg~al~~ 232 (253)
T PRK02083 219 GGADAALAASIFHF 232 (253)
T ss_pred CCccEEeEhHHHHc
Confidence 9999988886554
No 299
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.24 E-value=0.89 Score=53.40 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
+.+.+..+|+..| ..+|.| |+.--..+..++++|+|+|.++..+ | ..+.++...+..
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~~~GaD~I~LDn~~----------------~--e~l~~av~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEALEYGADIIMLDNMP----------------V--DLMQQAVQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHHHh
Confidence 6678888888764 334444 4444456677889999999999542 1 334555554432
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
. +.+++|.++||| |...+...+..|+|.+.+|+
T Consensus 240 ~--~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 240 Q--NPRVKIEASGNI-TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred c--CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEch
Confidence 2 357899999999 68899999999999887776
No 300
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.23 E-value=1.2 Score=52.36 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
++.+.|+.+|+..|.++|.|- +..-..+..++++|+|+|.+|+.. | .-+.++...+..
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVE----v~tl~ea~eal~~gaDiI~LDnm~----------------~--e~vk~av~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVE----VDSLEQLDEVLAEGAELVLLDNFP----------------V--WQTQEAVQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEE----cCCHHHHHHHHHcCCCEEEeCCCC----------------H--HHHHHHHHHHhc
Confidence 577788899987776666665 444446777899999999999763 1 223444443332
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
. +.++.|.+||||. ...+......|+|.+.+|+
T Consensus 243 ~--~~~v~ieaSGGI~-~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 243 R--APTVLLESSGGLT-LDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred c--CCCEEEEEECCCC-HHHHHHHHhcCCCEEEeCh
Confidence 2 4678999999996 7778888999999888776
No 301
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=91.08 E-value=0.8 Score=51.06 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=40.4
Q ss_pred ccCCCCcceEEEEEcC-CeEEEecccCCCCCCcEEEEeCCEEEEEeecccc
Q psy12805 115 AMEPWDGPALLTFTDG-RYIGAILDRNGLRPSRFYVLKDNVMVMASEVGVY 164 (1429)
Q Consensus 115 ~~epwdgpa~~~~~dg-~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~~ 164 (1429)
+.+--+|=-|+++-|. +.+-..-||.|.||. ||... +.+++|||.-.+
T Consensus 97 ~l~~L~G~FAfai~D~~~~L~laRDr~GikPL-Yy~~~-~~l~FASEikaL 145 (199)
T cd01909 97 AFRLAEGDFCFFIEDGNGRLTLATDHAGSVPV-YLVQA-GEVWATTELKLL 145 (199)
T ss_pred HHHHcCEEEEEEEEcCCCEEEEEECCCCCcCe-EEEEC-CeEEEEeCHHHH
Confidence 3445589899999888 778888999999999 77666 899999999877
No 302
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.07 E-value=0.24 Score=66.52 Aligned_cols=49 Identities=31% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCC-CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRG-QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g-~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.||. .++|++||+||||||+.. ..++..|+-.|+.|+.++..|+..
T Consensus 362 GGi~vd~-~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 362 SGVWVDE-HARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred ceEEecC-CCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 6688987 789999999999999763 456778999999999999998754
No 303
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.43 E-value=1.4 Score=51.05 Aligned_cols=101 Identities=19% Similarity=0.088 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
+.+++.+++...++. +.-+.|-+- ... .+..+.++|+|+|-+.+++=. ....... .+.+.
T Consensus 145 ~~~~l~~li~~a~~l--Gl~~lvevh---~~~-E~~~A~~~gadiIgin~rdl~----------~~~~d~~----~~~~l 204 (260)
T PRK00278 145 DDEQLKELLDYAHSL--GLDVLVEVH---DEE-ELERALKLGAPLIGINNRNLK----------TFEVDLE----TTERL 204 (260)
T ss_pred CHHHHHHHHHHHHHc--CCeEEEEeC---CHH-HHHHHHHcCCCEEEECCCCcc----------cccCCHH----HHHHH
Confidence 346788888888775 344444422 232 335577899999998765422 2222321 22222
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+ .. +...+.+|+-|||.|+.|+.+++.+||++|-+|++.+-
T Consensus 205 ~-~~-~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 205 A-PL-IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred H-Hh-CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 2 11 22346889999999999999999999999999996553
No 304
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=90.39 E-value=1.8 Score=54.68 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..++++|+|+|.|+-.+|.+ .-....+.++.+.. ..+ .+..|++.|..|+..++.+||
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~------------~~~~~~i~~ik~~~------p~~-~vi~g~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDS------------IYQLEMIKYIKKTY------PEL-DVIGGNVVTMYQAQNLIQAGV 311 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCc------------HHHHHHHHHHHHhC------CCC-cEEEecCCCHHHHHHHHHcCc
Confidence 46677899999999999877653 11112233333211 123 344689999999999999999
Q ss_pred hhhhc
Q psy12805 618 DEIGL 622 (1429)
Q Consensus 618 davg~ 622 (1429)
|++-+
T Consensus 312 D~i~v 316 (505)
T PLN02274 312 DGLRV 316 (505)
T ss_pred CEEEE
Confidence 99843
No 305
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=90.36 E-value=1.4 Score=49.88 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEecccc-C---------hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEV-G---------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 576 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~-G---------vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~ 576 (1429)
.+++.+++++.+.. ..|+++-..+.. . +...++.+.++|||+|..+=... . -.+.
T Consensus 111 ~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~------------~~t~ 175 (236)
T PF01791_consen 111 IEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-V------------GATP 175 (236)
T ss_dssp HHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-S------------CSHH
T ss_pred HHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-c------------cccH
Confidence 45566666666532 456665522211 1 23345667889999999863211 1 2344
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCc------ccHHHHHHHHHhcchhhhcch
Q psy12805 577 LGVAETHQVLALNNLRSRVVLQADGQI------RTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 577 laL~ev~q~L~~~gLR~~V~LiasGGI------rtg~Dv~kAlaLGAdavg~gt 624 (1429)
..+....+.........++.|.++||+ ++..++..++.+||+..|+..
T Consensus 176 ~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~ 229 (236)
T PF01791_consen 176 EDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSS 229 (236)
T ss_dssp HHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 444444444433333346779999999 999999999999997766544
No 306
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.11 E-value=1.9 Score=49.12 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 537 GVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
-..+..+.+.|+..|++..-+ -|| .-|.... .+.++.+. ..++++++||+++..|+.+++.+
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt---------~~G~~~~-li~~l~~~-------~~ipvi~~GGi~s~edi~~l~~~ 213 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGK---------MSGPNFE-LTGQLVKA-------TTIPVIASGGIRHQQDIQRLASL 213 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCC---------CCccCHH-HHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 345566777898877776432 122 2333332 23333322 25899999999999999999999
Q ss_pred cchhhhcchhHHH
Q psy12805 616 GADEIGLSTAPLI 628 (1429)
Q Consensus 616 GAdavg~gt~~L~ 628 (1429)
||+.+-+|++++-
T Consensus 214 G~~~vivG~a~~~ 226 (234)
T PRK13587 214 NVHAAIIGKAAHQ 226 (234)
T ss_pred CCCEEEEhHHHHh
Confidence 9999999987664
No 307
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.93 E-value=4.1 Score=46.64 Aligned_cols=107 Identities=14% Similarity=0.031 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
+|++..++..+|+.. ...++=+.+..-...+ ..+.+...++|.+-+..|+||... .+......-+.+ +
T Consensus 115 ~ee~~~~~~~~~~~g--~~~i~~i~P~T~~~~i-~~i~~~~~~~vy~~s~~g~tG~~~-----~~~~~~~~~i~~----l 182 (242)
T cd04724 115 PEEAEEFREAAKEYG--LDLIFLVAPTTPDERI-KKIAELASGFIYYVSRTGVTGART-----ELPDDLKELIKR----I 182 (242)
T ss_pred HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHH-HHHHhhCCCCEEEEeCCCCCCCcc-----CCChhHHHHHHH----H
Confidence 478888888888874 4444444455444333 334554567777766667766431 111122222232 3
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 629 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~a 629 (1429)
++. .+++|+++|||++..++.++... ||.+-+|++.+-.
T Consensus 183 r~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~ 221 (242)
T cd04724 183 RKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKI 221 (242)
T ss_pred Hhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence 221 26899999999999999999988 9999999866543
No 308
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=89.89 E-value=0.053 Score=54.90 Aligned_cols=68 Identities=32% Similarity=0.627 Sum_probs=42.6
Q ss_pred CccchHHHHhhccCCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhCCCC
Q psy12805 1227 RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFP 1297 (1429)
Q Consensus 1227 rv~D~~el~~l~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G~~ 1297 (1429)
|..+|+|+.... ..+.+....++|+.|..|.|.. +||++..+|.|..++..+++.+++..+++++.|+
T Consensus 1 r~~~f~e~~~~~-~~~~~~~ea~rC~~c~~~pC~~--aCP~~~dip~~i~~i~~g~~~~A~~~i~~~np~p 68 (111)
T PF14691_consen 1 RIKNFKEVEKGY-SEEEAIEEASRCLQCEDPPCQA--ACPAHIDIPEYIRLIREGNFKEAYELIREDNPFP 68 (111)
T ss_dssp ---------SS---HCCHHHHHHHS---TT-HHHH--TSTT---HHHHHHHHHCT-HHHHHHHHHHH-TTH
T ss_pred CCcCHHHHhcCc-CHHHHHHHHhhccCCCCCCccc--CCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCCc
Confidence 456777766543 3456677889999999999998 9999999999999999999999999999998876
No 309
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.89 E-value=0.46 Score=60.94 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
.|.|.||. .++|++||+||||||+. + ...+.+|+-.|+.|++++..++...
T Consensus 358 ~GGi~vd~-~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~ 417 (582)
T PRK09231 358 MGGIETDQ-NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAATA 417 (582)
T ss_pred CCCEEECC-CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35688886 78899999999999964 2 2467789999999999999988653
No 310
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.75 E-value=8.4 Score=44.88 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
.+|+..+++..+++. +...+.=+.+......+..-+..+ -.+|-+-...|-||... -++ ..+.+..+.
T Consensus 129 P~ee~~~~~~~~~~~--gi~~I~lv~PtT~~eri~~i~~~a-~gFIY~vS~~GvTG~~~-------~~~--~~~~~~i~~ 196 (263)
T CHL00200 129 PYEESDYLISVCNLY--NIELILLIAPTSSKSRIQKIARAA-PGCIYLVSTTGVTGLKT-------ELD--KKLKKLIET 196 (263)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEcCCCCCCCCc-------ccc--HHHHHHHHH
Confidence 346677777777775 344444445555444444433333 33555533667776531 122 224444444
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
+++. .+.+|.+.+||+|+.|+.++...|||.|=+|++.+-.+
T Consensus 197 ir~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 197 IKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 4432 36889999999999999999999999998999776433
No 311
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.72 E-value=4.4 Score=47.01 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
.+|+..+++..+++. +...+.=+++..- ......+++...++|-+-+.-|-||... ...-+...-+.++.+.
T Consensus 127 p~ee~~~~~~~~~~~--gl~~I~lvap~t~-~eri~~i~~~s~gfIY~vs~~GvTG~~~-----~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 127 PPEEAEELRAAAKKH--GLDLIFLVAPTTT-DERLKKIASHASGFVYYVSRAGVTGARS-----ADAADLAELVARLKAH 198 (258)
T ss_pred CHHHHHHHHHHHHHc--CCcEEEEeCCCCC-HHHHHHHHHhCCCcEEEEeCCCCCCccc-----CCCccHHHHHHHHHhc
Confidence 357778888888775 3333333333332 2233445666677887655556676531 1112222233333332
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
..++|++.+||+|+.|+.+++.. ||.+-+|+++.-.+
T Consensus 199 -------~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~ 235 (258)
T PRK13111 199 -------TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKII 235 (258)
T ss_pred -------CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHH
Confidence 26899999999999999998875 99999999776544
No 312
>KOG0572|consensus
Probab=89.60 E-value=0.95 Score=54.06 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred hHHHHHhhccCCCCCCC----CCC----CCc--ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCc
Q psy12805 10 EEEFRLLAEKCQLEVLG----QHE----NTR--KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSD 79 (1429)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~----~~~--r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sd 79 (1429)
--++..-|-||||--.- .|| -|+ =-||||||.=.-.--|..|..+- +.-...||
T Consensus 67 ~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g----------------~~l~T~SD 130 (474)
T KOG0572|consen 67 PGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEG----------------VGLNTSSD 130 (474)
T ss_pred ccceeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcC----------------cccccCCc
Confidence 35677889999995433 333 122 35799999533332333332111 12246899
Q ss_pred hHHHHHHHHhhCccccc-cCCCCCHHHHHHHHHHhhccCCCCcc-eEEEEEcCCeEEEecccCCCCCCcEEE---EeCC-
Q psy12805 80 SGAADCAVMTMVPEAWQ-NDGTMPDEKRDFYNWAACAMEPWDGP-ALLTFTDGRYIGAILDRNGLRPSRFYV---LKDN- 153 (1429)
Q Consensus 80 s~~~d~a~~~~~p~a~~-~~~~~~~~~~~~y~~~~~~~epwdgp-a~~~~~dg~~~ga~ldrnglrp~r~~~---~~d~- 153 (1429)
|.-+-+-+---.+.-++ +.++...+.+++|+ --.|- +++..+-++ +-|.-|-||.||. -+- +.|+
T Consensus 131 SElil~~~a~~~~~~~~~~~~d~~~ri~~~~~-------~~~g~Yslv~m~~d~-l~avRDp~G~RPL-~iG~r~~~~g~ 201 (474)
T KOG0572|consen 131 SELILQLIAYAPEDVYRVDAPDWFARIRDVME-------LLPGAYSLVFMTADK-LYAVRDPYGNRPL-CIGRRSNPDGT 201 (474)
T ss_pred HHHHHHHHHhchHhhhcccCccHHHHHHHHHH-------hcCCceeEEEEEccE-EEEEecCCCCccc-eEeeecCCCCc
Confidence 99888822211111122 22333445555554 44444 455556666 8888999999997 222 2233
Q ss_pred -EEEEEeeccccc
Q psy12805 154 -VMVMASEVGVYD 165 (1429)
Q Consensus 154 -~~~~~se~g~~~ 165 (1429)
-+++|||.=+++
T Consensus 202 ~~~v~aSESc~f~ 214 (474)
T KOG0572|consen 202 EAWVVASESCAFL 214 (474)
T ss_pred ceEEEEecceeee
Confidence 588999987765
No 313
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=89.55 E-value=2.2 Score=48.60 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=51.6
Q ss_pred hHHHHHHHHhcCCcEEEEecCCC-CCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~G-GTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.-..+....+. ++.|++.+-+. || ..|.... .+.++.+. ..++++++||++|..|+.+++.
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~~G~---------~~g~~~~-~~~~i~~~-------~~ipvi~~GGi~s~edi~~l~~ 209 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDRVGS---------GQGPDLE-LLERLAAR-------ADIPVIAAGGVRSVEDLELLKK 209 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCcccc---------CCCcCHH-HHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHH
Confidence 44556667777 88777765432 12 2333332 23333332 2589999999999999999999
Q ss_pred hcchhhhcchhHHH
Q psy12805 615 LGADEIGLSTAPLI 628 (1429)
Q Consensus 615 LGAdavg~gt~~L~ 628 (1429)
+||+.|-+|++++.
T Consensus 210 ~G~~~vivGsal~~ 223 (233)
T cd04723 210 LGASGALVASALHD 223 (233)
T ss_pred cCCCEEEEehHHHc
Confidence 99999999997654
No 314
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=88.92 E-value=1.2 Score=56.84 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=67.8
Q ss_pred CCCCCCc----ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHHHHHHHhhCccccccCCCC
Q psy12805 26 GQHENTR----KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADCAVMTMVPEAWQNDGTM 101 (1429)
Q Consensus 26 ~~~~~~~----r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~d~a~~~~~p~a~~~~~~~ 101 (1429)
|.||.+- -+|.+||||=-.+--++-...+. ..-...||+.-+-
T Consensus 58 g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g----------------~~f~t~sDtEvil----------------- 104 (542)
T COG0367 58 GRQPMIKEGGKYAIVYNGEIYNVEELRKELREAG----------------YEFRTYSDTEVIL----------------- 104 (542)
T ss_pred CCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcC----------------ceeccccchHHHH-----------------
Confidence 5677332 47899999965543333222211 1124566666543
Q ss_pred CHHHHHHHHHHhhccCCCCcceEEEEEcCC--eEEEecccCCCCCCcEEEEeCCEEEEEeecccc
Q psy12805 102 PDEKRDFYNWAACAMEPWDGPALLTFTDGR--YIGAILDRNGLRPSRFYVLKDNVMVMASEVGVY 164 (1429)
Q Consensus 102 ~~~~~~~y~~~~~~~epwdgpa~~~~~dg~--~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~~ 164 (1429)
+.|.+|-.-+.+-++|.-+++.-|.+ .+-..-||-|.||. ||-.+++.+++|||...+
T Consensus 105 ----~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPL-yy~~~~~~l~faSE~Kal 164 (542)
T COG0367 105 ----TLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPL-YYTSKNENLAFASEIKAL 164 (542)
T ss_pred ----HHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCcccc-EEEecCCceEEEechhhh
Confidence 34444444456667888888877765 48899999999999 777777889999999876
No 315
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.82 E-value=4.5 Score=45.53 Aligned_cols=105 Identities=24% Similarity=0.199 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHH--------------------HHHHHHhcCCcEEEEecCCCCCCcc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGV--------------------VASGVAKGKAEHIVISGHDGGTGAS 563 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~--------------------vA~~~akaGaD~I~IsG~~GGTgaa 563 (1429)
++.|++.+....|.+..+ .+.||++... |+.. -|..++++||++| +=+-|.
T Consensus 61 ~~~e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR---- 132 (211)
T cd00956 61 TDAEGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYV--SPFVGR---- 132 (211)
T ss_pred CCHHHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEE--EEecCh----
Confidence 355665555556655543 3666666532 2211 2344677888884 433333
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 564 SWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 564 p~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
++++|.+-...+.++.+.+..+++. ..|+ ..++||..++..++.+||+.+=+.-
T Consensus 133 ----~~~~g~dg~~~i~~i~~~~~~~~~~--tkil-~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 133 ----IDDLGGDGMELIREIRTIFDNYGFD--TKIL-AASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred ----HhhcCCCHHHHHHHHHHHHHHcCCC--ceEE-ecccCCHHHHHHHHHcCCCEEEeCH
Confidence 5677888888888899888888764 3344 4679999999999999999885443
No 316
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=88.78 E-value=6.1 Score=44.77 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCC-hHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP-~~laL~ev~q~L 586 (1429)
+++.+.+..+|+. +...++-+.+..-+..+..-+. -+|.|.+=+.+.|+|.-. + +| ...-+.++.+.+
T Consensus 93 ~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~--~~D~vlvMtV~PGfgGq~------f-i~~~lekI~~l~~~~ 161 (220)
T PRK08883 93 EHVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMD--KVDLILLMSVNPGFGGQS------F-IPHTLDKLRAVRKMI 161 (220)
T ss_pred ccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHH--hCCeEEEEEecCCCCCce------e-cHhHHHHHHHHHHHH
Confidence 3466778888876 4677888878776665543332 468777654444433211 1 22 233456666665
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
.++++ .++|.++|||. ...+...+..|||.+-+|++.
T Consensus 162 ~~~~~--~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 162 DESGR--DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred HhcCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHH
Confidence 55443 48899999999 788889999999999888853
No 317
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.71 E-value=0.63 Score=58.69 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-CC--------CcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-GQ--------SLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g~--------~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||+|+. +. ..+..|.-.|+.|++++..+..
T Consensus 333 GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~~ 389 (510)
T PRK08071 333 GGVKTNL-DGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKAT 389 (510)
T ss_pred CCEEECC-CCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhcc
Confidence 6689997 78999999999999964 21 2567788889999999877653
No 318
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=88.62 E-value=1.3 Score=49.85 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=54.6
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
....+|....+.|+|.|.+.+-+|.- ..- -+-...+.++.+. ..++|+++|||++..|+.+++.
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~--------~g~-~~~~~~i~~i~~~-------~~~pv~~~GGI~~~ed~~~~~~ 94 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAK--------AGK-PVNLELIEAIVKA-------VDIPVQVGGGIRSLETVEALLD 94 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc--------cCC-cccHHHHHHHHHH-------CCCCEEEcCCcCCHHHHHHHHH
Confidence 45567788888999999988875431 010 1223334444332 2578999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+.|-+|+..+
T Consensus 95 ~Ga~~vilg~~~l 107 (233)
T PRK00748 95 AGVSRVIIGTAAV 107 (233)
T ss_pred cCCCEEEECchHH
Confidence 9999998888554
No 319
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=88.54 E-value=1.7 Score=50.49 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
++.+.|..+|+..|. .+|+-.|+.--..+..+.++|||+|.+|+.. |. -+.++.+.|
T Consensus 173 ~i~~Av~~aR~~~~~---~~kIEVEvesle~~~eAl~agaDiImLDNm~----------------~e--~~~~av~~l-- 229 (280)
T COG0157 173 SITEAVRRARAAAPF---TKKIEVEVESLEEAEEALEAGADIIMLDNMS----------------PE--ELKEAVKLL-- 229 (280)
T ss_pred cHHHHHHHHHHhCCC---CceEEEEcCCHHHHHHHHHcCCCEEEecCCC----------------HH--HHHHHHHHh--
Confidence 466788888887644 4455556666666788999999999999984 22 244555544
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+++.++-+-+||||. ...+......|.|.+.+|.
T Consensus 230 -~~~~~~~lEaSGgIt-~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 230 -GLAGRALLEASGGIT-LENIREYAETGVDVISVGA 263 (280)
T ss_pred -ccCCceEEEEeCCCC-HHHHHHHhhcCCCEEEeCc
Confidence 667789999999996 6677778889999887665
No 320
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=88.32 E-value=2 Score=51.90 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHh--------CCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh
Q psy12805 504 IYSIEDLAELIYDLKCA--------NPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 575 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~--------~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~ 575 (1429)
..++|+..+.++.+|+. ..+..|.+-+.+...--..+..+.++|+|+|+|+...|.+ + -.
T Consensus 69 ~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s--------~----~~ 136 (352)
T PF00478_consen 69 NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS--------E----HV 136 (352)
T ss_dssp SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS--------H----HH
T ss_pred CCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH--------H----HH
Confidence 47899999999999864 2234455554443334556777899999999999887663 0 11
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 576 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 576 ~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
...+..+.+. . .+++|| .|.+-|..-+...+..|||+|=+|
T Consensus 137 ~~~ik~ik~~---~---~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 137 IDMIKKIKKK---F---PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHH---S---TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHh---C---CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 1223332222 1 257787 588999988888899999976443
No 321
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.30 E-value=2 Score=52.72 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..++++|+|+|+|+-..|. +......+.++.+.. .++. +..|.+.|..++..++.+||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~------------~~~~~~~v~~ik~~~------p~~~-vi~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH------------STRIIELVKKIKTKY------PNLD-LIAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC------------ChhHHHHHHHHHhhC------CCCc-EEEEecCCHHHHHHHHHcCC
Confidence 4667789999999999877643 123333344433321 1233 45689999999999999999
Q ss_pred hhhhcc
Q psy12805 618 DEIGLS 623 (1429)
Q Consensus 618 davg~g 623 (1429)
|++.+|
T Consensus 217 D~I~vG 222 (404)
T PRK06843 217 DCLKVG 222 (404)
T ss_pred CEEEEC
Confidence 998644
No 322
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=88.29 E-value=0.075 Score=65.94 Aligned_cols=54 Identities=39% Similarity=0.681 Sum_probs=49.0
Q ss_pred CceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhCCCCC
Q psy12805 1242 KGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G~~~ 1298 (1429)
+....++++|+.|+. +|+. +||+.+.||.|..+++.+.|.++++.+.+++.++.
T Consensus 16 ~~a~~~a~rCl~C~~-~C~~--~cp~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~ 69 (457)
T COG0493 16 EAAIYEAARCLDCGD-PCIT--GCPVHNDIPEPIGLVREGVDHEAIKLIHKTNNLPA 69 (457)
T ss_pred HHHHHHHHHHHcCCC-cccc--CCcCCCcCCCHHHHHhcCCcHHHHHHHHHhCCCcc
Confidence 356667899999999 9998 99999999999999999999999999999998664
No 323
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.05 E-value=1.3 Score=49.70 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=54.3
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-.+|....+.|+|.|.|.+.++.. ...+..+ ..+.++.+.. .+++++.|||++..|+-+++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~--------~~~~~~~-~~i~~i~~~~-------~~pv~~~GgI~~~e~~~~~~~ 93 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAK--------GGEPVNL-ELIEEIVKAV-------GIPVQVGGGIRSLEDIERLLD 93 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccc--------cCCCCCH-HHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHH
Confidence 34557777888999999999776431 1112222 2233333321 478999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
.|||.+.+++.++
T Consensus 94 ~Gad~vvigs~~l 106 (234)
T cd04732 94 LGVSRVIIGTAAV 106 (234)
T ss_pred cCCCEEEECchHH
Confidence 9999998888654
No 324
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.81 E-value=1.3 Score=48.72 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=48.6
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh---HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW---ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~---~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
.+..+.+.|+|+|.++...-++ .+.+.+. ...+.++.+.+ ..++|++.||| +..++..++.+
T Consensus 116 e~~~a~~~gaD~v~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~------~~~~v~a~GGI-~~~~i~~~~~~ 180 (212)
T PRK00043 116 EAAAALAAGADYVGVGPIFPTP--------TKKDAKAPQGLEGLREIRAAV------GDIPIVAIGGI-TPENAPEVLEA 180 (212)
T ss_pred HHHHHhHcCCCEEEECCccCCC--------CCCCCCCCCCHHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHc
Confidence 3455678899999987443211 0111111 23344443332 23899999999 68999999999
Q ss_pred cchhhhcchhHH
Q psy12805 616 GADEIGLSTAPL 627 (1429)
Q Consensus 616 GAdavg~gt~~L 627 (1429)
||+.+.+|++.+
T Consensus 181 Ga~gv~~gs~i~ 192 (212)
T PRK00043 181 GADGVAVVSAIT 192 (212)
T ss_pred CCCEEEEeHHhh
Confidence 999999888643
No 325
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=87.57 E-value=4.8 Score=45.47 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHH--------------------HHHHHHhcCCcEEEEecCCCCCCccc
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEV-GVGV--------------------VASGVAKGKAEHIVISGHDGGTGASS 564 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~--------------------vA~~~akaGaD~I~IsG~~GGTgaap 564 (1429)
+.+++.+.-..|.+..| .+.||++... |+.. -|..++++|+++|-.= -|.
T Consensus 62 ~~~~mi~~a~~l~~~~~--~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispy--vgR----- 132 (213)
T TIGR00875 62 DAEGMVEEAKELAKLAP--NIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPF--VGR----- 132 (213)
T ss_pred CHHHHHHHHHHHHHhCC--CeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEee--cch-----
Confidence 45555555555655554 3777776542 3322 1233667788866532 222
Q ss_pred cccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 565 WTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 565 ~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
++++|.+-...+.++++.+..++.+.+ |+ ...+|+..++..++++|+|.+=+.
T Consensus 133 ---i~d~g~dg~~~v~~~~~~~~~~~~~tk--Il-aAS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 133 ---LDDIGGDGMKLIEEVKTIFENHAPDTE--VI-AASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred ---HHHcCCCHHHHHHHHHHHHHHcCCCCE--EE-EeccCCHHHHHHHHHcCCCEEEcC
Confidence 567778878888888888888887654 33 457999999999999999877433
No 326
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.50 E-value=0.82 Score=58.08 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQ--------SLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~--------~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.||. ..+|++||+||||+|+.+. ..+.+|+-.|+.|++++..++..
T Consensus 349 GGi~vd~-~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 349 GGIRINE-DCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred CCEEECC-CCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 5588886 7889999999999987532 34678999999999999998754
No 327
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.45 E-value=3.3 Score=48.53 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
..-+..+|+..|..+|.|- +.--..+..+.++|+|+|.++... ...+.++.+.+
T Consensus 177 ~~av~~~r~~~~~~~I~VE----v~tleea~eA~~~gaD~I~LD~~~------------------~e~l~~~v~~~---- 230 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEVE----VESLDELRQALAAGADIVMLDELS------------------LDDMREAVRLT---- 230 (277)
T ss_pred HHHHHHHHHhCCCCeEEEE----eCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh----
Confidence 3446777776655556555 333445667889999999885321 12344444432
Q ss_pred CCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.++++.++||| |...+...+..|+|.+.+|+
T Consensus 231 -~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 231 -AGRAKLEASGGI-NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred -CCCCcEEEECCC-CHHHHHHHHHcCCCEEEECh
Confidence 347899999999 58889999999999887776
No 328
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=87.38 E-value=0.54 Score=57.66 Aligned_cols=46 Identities=26% Similarity=0.244 Sum_probs=41.4
Q ss_pred CEEecCCCCccCCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy12805 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1358 ~I~VD~~~~~TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L 1404 (1429)
++.+|+ .++|+++|+|++||+++...-++.|...|-.+|+.|.+..
T Consensus 438 ri~~d~-~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDE-DLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeecc-cceeeecceEEccccccccchhHHHhhhhHHHHHHHHHHh
Confidence 467787 5999999999999999988899999999999999998765
No 329
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=87.33 E-value=1.4 Score=57.68 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=61.6
Q ss_pred HHHHhhccCCCCCC----CCCCCCc----c-cccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHH
Q psy12805 12 EFRLLAEKCQLEVL----GQHENTR----K-CVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGA 82 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~----r-~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~ 82 (1429)
..++.|-||+|+-. +.|||.. + .|+|||+|---+-.++.+.++-. .-...|||.-
T Consensus 87 ~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~----------------~f~s~tDtEv 150 (680)
T PLN02981 87 HAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGF----------------TFESDTDTEV 150 (680)
T ss_pred cEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCC----------------eeccCCHHHH
Confidence 35788999999975 4688642 1 68999999866656555543211 1145688876
Q ss_pred HHHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEEc---CCeEEEecccCCCCCC
Q psy12805 83 ADCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTD---GRYIGAILDRNGLRPS 145 (1429)
Q Consensus 83 ~d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~d---g~~~ga~ldrnglrp~ 145 (1429)
+-..+.-.. ..|...... .+|.+=...+++-.+|..++++.+ ...+-+.-| | ||.
T Consensus 151 i~~li~~~~-~~~~~~~~~----~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~--~-~PL 208 (680)
T PLN02981 151 IPKLAKFVF-DKLNEEEGD----VTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKR--G-SPL 208 (680)
T ss_pred HHHHHHHHH-HhcccccCC----CCHHHHHHHHHHhccCccceEEEecCCCCeEEEEec--C-Cce
Confidence 555322111 123211000 022233333556678888888877 344444433 5 885
No 330
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=87.23 E-value=3.5 Score=48.66 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhc
Q psy12805 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 589 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~ 589 (1429)
+.+.|..+|+..|..+|.|- +..-..+..++++|+|+|.+++.. | .-+.++...+
T Consensus 195 i~~av~~~r~~~~~~kIeVE----v~sleea~ea~~~gaDiI~LDn~s----------------~--e~~~~av~~~--- 249 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVE----VENLDELDQALKAGADIIMLDNFT----------------T--EQMREAVKRT--- 249 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEE----eCCHHHHHHHHHcCCCEEEeCCCC----------------h--HHHHHHHHhh---
Confidence 67788888888777666554 445566778899999999999884 2 2234444432
Q ss_pred CCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 590 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 590 gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.++.|.+||||. ...+......|+|.+.+|.
T Consensus 250 --~~~~~ieaSGGI~-~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 250 --NGRALLEVSGNVT-LETLREFAETGVDFISVGA 281 (296)
T ss_pred --cCCeEEEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 4478899999996 7778888999999887775
No 331
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.15 E-value=6.1 Score=42.50 Aligned_cols=100 Identities=29% Similarity=0.227 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhC-CCCeEEEEecccc--ChHHHH---HHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHH
Q psy12805 507 IEDLAELIYDLKCAN-PNARISVKLVSEV--GVGVVA---SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 580 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~-~~~pV~VKLv~e~--Gvg~vA---~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ 580 (1429)
.+.+.+.++++.+.. .+.||.++..+.. ....+. +.+.+.|+|.|..+..... +......+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------------~~~~~~~~~ 163 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------------GGATVEDVK 163 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------------CCCCHHHHH
Confidence 577788888887763 3689999987532 222332 3356789999987643111 111222233
Q ss_pred HHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 581 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 581 ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
++.+.+ ..++++++.||+.+..++..++.+||+.+.+|
T Consensus 164 ~i~~~~-----~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 164 LMKEAV-----GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHhc-----ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 333222 22578999999999999999999999987654
No 332
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.09 E-value=0.91 Score=58.75 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=40.1
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRG--------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g--------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|.|.||....+|++||+||||+|+.+ .....+|+-.|+.|++++..++...
T Consensus 392 GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~ 450 (626)
T PRK07803 392 GGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGL 450 (626)
T ss_pred CCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 44777763456999999999998753 2467889999999999999887643
No 333
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=87.07 E-value=4.1 Score=51.94 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=38.9
Q ss_pred eCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecCCCCc--cCCCCEEEeCCCCCCCCcHHHHHHHHHHHH
Q psy12805 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYL--TTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397 (1429)
Q Consensus 1320 ~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~~~~~--TSvPgVFAAGD~a~g~~lvv~Ai~qGr~AA 1397 (1429)
..++....++|.||+|+|.. ..-.++++.-++..+ +.+..-...+- -..|.+..+|=+.........+-.|+|.+|
T Consensus 312 F~DGs~~e~vD~II~~TGY~-~~fpFL~~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a 389 (531)
T PF00743_consen 312 FEDGSTEEDVDVIIFCTGYK-FSFPFLDESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAA 389 (531)
T ss_dssp ETTSEEEEE-SEEEE---EE----TTB-TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 44444445799999999998 455566654343332 22211111121 245889999965432234455666666654
Q ss_pred HHHHHHHhCCCCCCC
Q psy12805 1398 REIDSFLMGTSTLPD 1412 (1429)
Q Consensus 1398 ~nI~~~L~g~~~~p~ 1412 (1429)
+.+.|...+|.
T Consensus 390 ----~v~sG~~~LPs 400 (531)
T PF00743_consen 390 ----RVFSGRVKLPS 400 (531)
T ss_dssp ----HHHTTSS----
T ss_pred ----ccccccccccc
Confidence 45577766664
No 334
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.02 E-value=2 Score=46.47 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccc
Q psy12805 1280 HNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF 1338 (1429)
Q Consensus 1280 ~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~ 1338 (1429)
.+++.++++...++.+ +.++.+++++++. ++.|.....++ +++.||.||+|+|.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~---~~~w~v~~~~~--~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRD---GDGWTVTTRDG--RTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEE---TTTEEEEETTS---EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEe---ccEEEEEEEec--ceeeeeeEEEeeec
Confidence 3567788888888877 5578889999775 33466544333 57889999999996
No 335
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=86.76 E-value=3.9 Score=48.10 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 507 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 507 iedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
++.+.+.|..+|+..|..+|.|- +..-..|..++++|+|+|.+++.. | .-+.++.+.+
T Consensus 173 ~~~i~~av~~~r~~~~~~kIeVE----v~tleqa~ea~~agaDiI~LDn~~----------------~--e~l~~av~~~ 230 (284)
T PRK06096 173 PQDWSGAINQLRRHAPEKKIVVE----ADTPKEAIAALRAQPDVLQLDKFS----------------P--QQATEIAQIA 230 (284)
T ss_pred cccHHHHHHHHHHhCCCCCEEEE----CCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHh
Confidence 45688899999988776555554 445556777899999999998763 2 2244555544
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
... +.++.|-+||||. ...+......|+|.+-+|.
T Consensus 231 ~~~--~~~~~leaSGGI~-~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 231 PSL--APHCTLSLAGGIN-LNTLKNYADCGIRLFITSA 265 (284)
T ss_pred hcc--CCCeEEEEECCCC-HHHHHHHHhcCCCEEEECc
Confidence 222 3478899999996 7778888999999885554
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.19 E-value=0.13 Score=63.74 Aligned_cols=72 Identities=26% Similarity=0.476 Sum_probs=60.2
Q ss_pred CccCccchHHHHhhccCCCceEEEcccccccc--HHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhCCCCC
Q psy12805 1224 AEKRLKDWDEIYATQHVRKGLRIQAARCMECG--VPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298 (1429)
Q Consensus 1224 ~~~rv~D~~el~~l~~~pk~lvVIGaGcIgcE--~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G~~~ 1298 (1429)
.++|..|++|+.. ....+.++...++|+.|. .|.|.+ +||++..+|.|..++..+++.++++-+++++.|+.
T Consensus 2 ~~~~~~~~~e~~~-~~~~~~~~~ea~rc~~c~~~~~~C~~--~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~~p~p~ 75 (449)
T TIGR01316 2 PEERSKLFQEAAL-GYTEQLALVEAQRCLNCKDATKPCIK--GCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPA 75 (449)
T ss_pred HHHhhcChHhhcc-CcCHHHHHHHHhhCcCccCCCCChhh--hCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCChhH
Confidence 4567788887643 334556677779999998 999997 99999999999999999999999999999998664
No 337
>PRK01362 putative translaldolase; Provisional
Probab=86.18 E-value=7.8 Score=43.87 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHH--------------------HHHHHHhcCCcEEEEecCCCCCCcc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGV--------------------VASGVAKGKAEHIVISGHDGGTGAS 563 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~--------------------vA~~~akaGaD~I~IsG~~GGTgaa 563 (1429)
++.+++.+.-..|++..| .|.||++... |+.. -|..++++|+++|-.= -|.
T Consensus 61 ~d~~~m~~~a~~l~~~~~--~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispy--vgR---- 132 (214)
T PRK01362 61 LDAEGMIKEGRELAKIAP--NVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPF--VGR---- 132 (214)
T ss_pred CCHHHHHHHHHHHHHhCC--CEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEee--cch----
Confidence 355666666666666654 3788877642 3322 1223667788876532 222
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 564 SWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 564 p~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
++++|.+-...+.+.++.+..++.+. .|+ ...+|+..++..++++|||.+=+.
T Consensus 133 ----i~d~g~dg~~~i~~~~~~~~~~~~~t--kil-aAS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 133 ----LDDIGTDGMELIEDIREIYDNYGFDT--EII-AASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred ----HhhcCCCHHHHHHHHHHHHHHcCCCc--EEE-EeecCCHHHHHHHHHcCCCEEecC
Confidence 56778888888889999888887653 344 457999999999999999866443
No 338
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=86.08 E-value=3.1 Score=48.76 Aligned_cols=92 Identities=21% Similarity=0.162 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
+.+.+.+..+|+..|..+|.|- +..-..|..++++|+|+|.+++.. | .-+.++.+.+.
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVE----v~tleea~ea~~~GaDiI~lDn~~----------------~--e~l~~~v~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVE----ADTIEQALTVLQASPDILQLDKFT----------------P--QQLHHLHERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEE----CCCHHHHHHHHHcCcCEEEECCCC----------------H--HHHHHHHHHHh
Confidence 5688899999988776555554 445556777899999999999653 1 12444445443
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.+.++.|.++|||. ...+......|+|.+-+|.
T Consensus 231 --~~~~~~~leasGGI~-~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 231 --FFDHIPTLAAAGGIN-PENIADYIEAGIDLFITSA 264 (277)
T ss_pred --ccCCCEEEEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 234578899999996 7889899999999886554
No 339
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=85.95 E-value=0.98 Score=58.32 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=36.1
Q ss_pred CCccCCCCEEEeCCCCC-C-CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1365 TYLTTVPRVYAAGDCRR-G-QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1365 ~~~TSvPgVFAAGD~a~-g-~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
..+|++||+||+|||+. + ..+...+..+|.+|+.++..++...
T Consensus 401 ~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILDH 445 (614)
T ss_pred CCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHhC
Confidence 67899999999999865 2 3477888999999999999998654
No 340
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.93 E-value=2 Score=50.53 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHH
Q psy12805 500 PHHDIYSIEDLAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 578 (1429)
Q Consensus 500 ~h~di~siedL~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~la 578 (1429)
.|..++. .+.+.|..+|+..| ..+|.| |+.--..+..++++|||+|.+|+.. | .-
T Consensus 175 NHi~~~g--~i~~av~~~r~~~~~~~kIeV----Ev~tleea~~a~~agaDiImLDnms----------------p--e~ 230 (290)
T PRK06559 175 NHIAAVG--SVQKAIAQARAYAPFVKMVEV----EVESLAAAEEAAAAGADIIMLDNMS----------------L--EQ 230 (290)
T ss_pred HHHHhhc--cHHHHHHHHHHhCCCCCeEEE----ECCCHHHHHHHHHcCCCEEEECCCC----------------H--HH
Confidence 3334443 57778888988765 344444 4544466778899999999999884 2 22
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 579 L~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.++.+.+ +.++.+.+||||. ...+......|+|.+-+|.
T Consensus 231 l~~av~~~-----~~~~~leaSGGI~-~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 231 IEQAITLI-----AGRSRIECSGNID-MTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHHHHh-----cCceEEEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 44444433 3468899999996 7778888999999886665
No 341
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=85.61 E-value=1.5 Score=49.49 Aligned_cols=75 Identities=25% Similarity=0.218 Sum_probs=57.5
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.-..+|+.+.++|+..|-==|..-|| ..|+-....|....+.. +|+||+|-||-++.|++.++-
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGS---------g~G~~n~~~l~iiie~a-------~VPviVDAGiG~pSdAa~aME 202 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGS---------GLGLQNPYNLEIIIEEA-------DVPVIVDAGIGTPSDAAQAME 202 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccC---------CcCcCCHHHHHHHHHhC-------CCCEEEeCCCCChhHHHHHHh
Confidence 44567899999999988755555454 45666666665444332 799999999999999999999
Q ss_pred hcchhhhcchh
Q psy12805 615 LGADEIGLSTA 625 (1429)
Q Consensus 615 LGAdavg~gt~ 625 (1429)
||+|+|-+-|+
T Consensus 203 lG~DaVL~NTA 213 (262)
T COG2022 203 LGADAVLLNTA 213 (262)
T ss_pred cccceeehhhH
Confidence 99999977764
No 342
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=85.50 E-value=4.9 Score=48.52 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhc---CCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 511 AELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKG---KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 511 ~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~aka---GaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
...+...++..| ..++.|-.-.....-..|..+.++ |+|.|.+|...-. .|-+ ..++..+.+.|
T Consensus 187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~-----------~g~l-~~~v~~vr~~l 254 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR-----------RGNF-RKIVREVRWTL 254 (343)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC-----------CccH-HHHHHHHHHHH
Confidence 445778887776 456776644331121234444555 8999999997520 0112 23445566666
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 629 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~a 629 (1429)
...|.+ ++.|.+|||| |...+...... .|.+++|+.++-+
T Consensus 255 d~~g~~-~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 255 DIRGYE-HVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred HhcCCC-CeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 666654 5899999999 57667666666 9999999966543
No 343
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=85.49 E-value=5 Score=46.94 Aligned_cols=89 Identities=25% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
.+.+..+|+..|..+|.|- +.--..+..++++|+|+|.++... |. .+.++.+.+...
T Consensus 171 ~~av~~~R~~~~~~~IgVe----v~t~eea~~A~~~gaD~I~ld~~~----------------p~--~l~~~~~~~~~~- 227 (272)
T cd01573 171 LKALARLRATAPEKKIVVE----VDSLEEALAAAEAGADILQLDKFS----------------PE--ELAELVPKLRSL- 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEEE----cCCHHHHHHHHHcCCCEEEECCCC----------------HH--HHHHHHHHHhcc-
Confidence 6677888887666555544 222344566789999999998653 21 233444433211
Q ss_pred CCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
..+++++++||| |...+...+..|||.+.++.
T Consensus 228 -~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 228 -APPVLLAAAGGI-NIENAAAYAAAGADILVTSA 259 (272)
T ss_pred -CCCceEEEECCC-CHHHHHHHHHcCCcEEEECh
Confidence 135899999999 78999999999999994444
No 344
>PRK04302 triosephosphate isomerase; Provisional
Probab=85.35 E-value=7.7 Score=43.78 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCChHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
..+++.+++...++. +..+++ + ++-...+..+.+.+.|+|-+-... -||+.. . . -+....+.++++
T Consensus 99 ~~~e~~~~v~~a~~~--Gl~~I~--~--v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~----~-~--~~~~~~i~~~~~ 165 (223)
T PRK04302 99 TLADIEAVVERAKKL--GLESVV--C--VNNPETSAAAAALGPDYVAVEPPELIGTGIP----V-S--KAKPEVVEDAVE 165 (223)
T ss_pred CHHHHHHHHHHHHHC--CCeEEE--E--cCCHHHHHHHhcCCCCEEEEeCccccccCCC----C-C--cCCHHHHHHHHH
Confidence 446688888888875 333333 2 222333445677899998765421 122211 0 0 122344666676
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.+.+. ..+++|++.|||++..|+..++..|||+|-+|++.+-
T Consensus 166 ~ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 166 AVKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 66542 2358999999999999999999999999999997664
No 345
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=85.22 E-value=1.1 Score=57.44 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
.|.|.+|. ..+|++||+||||+|+. + ......|+-.|+.|++++..+...
T Consensus 357 ~GGi~~d~-~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDI-NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECc-CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 35578886 78899999999999863 2 146778999999999999988754
No 346
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=85.20 E-value=1.1 Score=57.10 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCEEecCCCCc----cCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYL----TTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~----TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.||. ..+ |++||+||||+|+. + ...+.+|+-.|+.|++++..++..
T Consensus 343 GGi~id~-~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 404 (566)
T TIGR01812 343 GGIPTDY-TGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK 404 (566)
T ss_pred CCeEECc-CcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3455554 445 99999999999864 2 146788999999999999988754
No 347
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=85.01 E-value=1.7 Score=52.27 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEccCCCCCcCC-------ccCccchHHHHhh---ccCCCceEEEccccccccHHHHHHhCC
Q psy12805 1212 IKYSRETAPYRPA-------EKRLKDWDEIYAT---QHVRKGLRIQAARCMECGVPFCQSSHG 1264 (1429)
Q Consensus 1212 ~kiAtGs~P~~p~-------~~rv~D~~el~~l---~~~pk~lvVIGaGcIgcE~a~c~s~~G 1264 (1429)
+.+++|..|+.|. ..++..+.+.... ...+++++|||||--+.|+..-+.+.+
T Consensus 151 vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~ 213 (341)
T PF13434_consen 151 VVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRG 213 (341)
T ss_dssp EEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-
T ss_pred EEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCC
Confidence 7799999999983 2445444444433 345789999999999998776655433
No 348
>PRK07804 L-aspartate oxidase; Provisional
Probab=84.96 E-value=1.1 Score=57.12 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCC-C----C----CcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRR-G----Q----SLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~-g----~----~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
.|.|.||. .++|++||+||||||+. + . .....++-.|+.|++++..+..
T Consensus 357 ~GGi~vd~-~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~~ 414 (541)
T PRK07804 357 CGGVVTDV-YGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHAA 414 (541)
T ss_pred CCCEEECC-CCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36688886 78899999999999963 2 1 2345567778888888877754
No 349
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.86 E-value=4.8 Score=46.97 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhc
Q psy12805 511 AELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 589 (1429)
Q Consensus 511 ~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~ 589 (1429)
..-+..+|+..| ..+|.|- +.--..+..+.++|+|+|.++... ...+.++.+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Igve----v~s~eea~~A~~~gaDyI~ld~~~------------------~e~l~~~~~~~--- 223 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVE----VETLEQLKEALEAGADIIMLDNMS------------------PEELREAVALL--- 223 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEE----ECCHHHHHHHHHcCCCEEEECCcC------------------HHHHHHHHHHc---
Confidence 345777887765 4455554 222345667889999999997542 23345554433
Q ss_pred CCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 590 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 590 gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.++++.++||| |...+...+..|+|.+.+++
T Consensus 224 --~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 224 --KGRVLLEASGGI-TLENIRAYAETGVDYISVGA 255 (268)
T ss_pred --CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEe
Confidence 236899999999 58889899999999887776
No 350
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=84.84 E-value=5 Score=46.66 Aligned_cols=100 Identities=22% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcC-CcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhc
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 589 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaG-aD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~ 589 (1429)
.+.+..+|+..|. +...|+-.++..-..+..++++| +|.|.+|...-. -+-|... +....++|...
T Consensus 169 ~~a~~~~~~~~~~-~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~-----------~~~~~~~-~~~~~~~~~~~ 235 (281)
T cd00516 169 LAAVKALRRWLPE-LFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPE-----------ELDPAVL-ILKARAHLDGK 235 (281)
T ss_pred HHHHHHHHHhCCC-CceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChH-----------HHHHHHH-HHHHHHhhhhc
Confidence 3677788887654 45666665654444556788888 999999976421 1123322 33444555544
Q ss_pred CCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 590 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 590 gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
+. .++.|++||||. ...+......|.|.+|+|+.
T Consensus 236 ~~-~~~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~ 269 (281)
T cd00516 236 GL-PRVKIEASGGLD-EENIRAYAETGVDVFGVGTL 269 (281)
T ss_pred CC-CceEEEEeCCCC-HHHHHHHHHcCCCEEEeCcc
Confidence 44 568999999997 88888889999999999983
No 351
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=84.80 E-value=5.6 Score=46.36 Aligned_cols=87 Identities=28% Similarity=0.332 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
+..-+.++|+..+ ..+|.|- +.--..+..+.++|+|+|.++... | ..+.++.+.+
T Consensus 164 ~~~av~~~r~~~~~~~~Igve----v~t~eea~~A~~~gaDyI~ld~~~----------------~--e~lk~~v~~~-- 219 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVE----VESLEEAEEAAEAGADIIMLDNMK----------------P--EEIKEAVQLL-- 219 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEE----eCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHh--
Confidence 4556778888765 4555554 223345677889999999996642 1 3344544443
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.+++|.++||| |..++...+..|||.+.+|.
T Consensus 220 ---~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 220 ---KGRVLLEASGGI-TLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred ---cCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCH
Confidence 334899999999 58889899999999888754
No 352
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=84.69 E-value=2.2 Score=54.36 Aligned_cols=135 Identities=20% Similarity=0.236 Sum_probs=74.7
Q ss_pred CceEEEccccccccHHHHHHhCCCCc------cc-----------------c-------ccc----cch---------hh
Q psy12805 1242 KGLRIQAARCMECGVPFCQSSHGCPL------GN-----------------I-------IPK----WND---------LI 1278 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~~Gc~V------~~-----------------i-------Lp~----~d~---------lv 1278 (1429)
++++|||||..|+-.+-++...|.++ +. + +|+ |.+ ..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999887776666555544 00 0 000 111 11
Q ss_pred ccchHHHHHHHHHHhCC----CCCCcEEEEEEEeec--CCCceEEEEeC-CCeeEEEecEEEEeccccCchhhhhh--cc
Q psy12805 1279 YHNNWSEALNQLLQTNN----FPAGIKTVKVEWTKD--ATGRWKMDEVP-NSEKIFKCDLVLLAMGFLGPERYIAN--EL 1349 (1429)
Q Consensus 1279 f~~e~~~al~~~Le~~G----~~~gv~v~~Ve~~k~--~~G~~~~v~~~-gse~~ieaDlVLlAiG~~pp~~~Lle--~l 1349 (1429)
...++.++++...+..+ +.++++|.+|++..+ ..|+|..+... +..++..+|.|++|+|.- ....+.. --
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~-~~P~~P~~~~~ 160 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF-SKPNIPEPSFP 160 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS-SCESB-----C
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc-CCCCCChhhhh
Confidence 23578888888888776 567899999987543 24678765533 334567789999999975 2222222 23
Q ss_pred CccccCCCCEEecCCCCcc----CCCCEEEeCCC
Q psy12805 1350 DLTLDPRSNYSTVEKTYLT----TVPRVYAAGDC 1379 (1429)
Q Consensus 1350 GLeld~~G~I~VD~~~~~T----SvPgVFAAGD~ 1379 (1429)
|++.= .|.+.--. .++. ....|-++|-.
T Consensus 161 G~e~F-~G~i~HS~-~yr~~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 161 GLEKF-KGEIIHSK-DYRDPEPFKGKRVLVVGGG 192 (531)
T ss_dssp TGGGH-CSEEEEGG-G--TGGGGTTSEEEEESSS
T ss_pred hhhcC-CeeEEccc-cCcChhhcCCCEEEEEeCC
Confidence 44422 35554322 2332 24568888854
No 353
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=84.62 E-value=3.5 Score=49.36 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhc--CCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 502 HDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG--KAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 502 ~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~aka--GaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
|-.|++|+++..++..+... ...+.|-+.....--..+..+.++ ++|+|+||-+.|.+ .-.+..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~-~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs------------~~~i~~i 141 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDC-LQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYS------------EHFVEFV 141 (343)
T ss_pred eeCCCHHHHHHHHHhhcccc-cceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcH------------HHHHHHH
Confidence 55689999888887755432 233444211111111245557777 59999999887763 1122223
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhh
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 621 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg 621 (1429)
..+.+.. ..+ .+..|-|-|+.|+..++..|||++=
T Consensus 142 k~ir~~~------p~~-~viaGNV~T~e~a~~Li~aGAD~ik 176 (343)
T TIGR01305 142 KLVREAF------PEH-TIMAGNVVTGEMVEELILSGADIVK 176 (343)
T ss_pred HHHHhhC------CCC-eEEEecccCHHHHHHHHHcCCCEEE
Confidence 3332221 123 4455779999999999999999763
No 354
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=84.56 E-value=21 Score=41.78 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccc----cChHHHHHHHHhcCCcEEEEec-------------------------
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSE----VGVGVVASGVAKGKAEHIVISG------------------------- 555 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e----~Gvg~vA~~~akaGaD~I~IsG------------------------- 555 (1429)
.++++..++++.+|+.++++|+++=.-.+ -|+....+.+.++|+|.++|-+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 36677778888888776677776643221 2555555556666666554331
Q ss_pred -----------------------CCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHH
Q psy12805 556 -----------------------HDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVA 612 (1429)
Q Consensus 556 -----------------------~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kA 612 (1429)
..|-||+. .+....+.+..+.+++. .++++.+-=||+++.|+.+.
T Consensus 156 Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~~---------~~~~~~~~~~v~~vr~~---~~~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 156 PTTPDERLKKIAEAASGFIYYVSRMGVTGAR---------NPVSADVKELVKRVRKY---TDVPVLVGFGISSPEQAAQV 223 (265)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEecccccCCC---------cccchhHHHHHHHHHHh---cCCCeEEecCcCCHHHHHHH
Confidence 12223222 12111234444444332 37899998899999999999
Q ss_pred HHhcchhhhcchhHHHHh
Q psy12805 613 ALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 613 laLGAdavg~gt~~L~al 630 (1429)
... ||.|=+|++..-.+
T Consensus 224 ~~~-ADGVIVGSAiV~~i 240 (265)
T COG0159 224 AEA-ADGVIVGSAIVKII 240 (265)
T ss_pred HHh-CCeEEEcHHHHHHH
Confidence 999 99999999766544
No 355
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.46 E-value=3.8 Score=48.10 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCCCCC--CHHHHHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChH
Q psy12805 500 PHHDIY--SIEDLAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 576 (1429)
Q Consensus 500 ~h~di~--siedL~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~ 576 (1429)
.|-.++ +.+.+.+.|..+|+..| ..+|.| |+.--..+..++++|+|+|.+|+.. |-
T Consensus 167 NHi~~~~~g~~~i~~av~~~r~~~~~~~kIeV----Ev~slee~~ea~~~gaDiImLDn~s----------------~e- 225 (281)
T PRK06543 167 NHLAALAAQGLDLTEALRHVRAQLGHTTHVEV----EVDRLDQIEPVLAAGVDTIMLDNFS----------------LD- 225 (281)
T ss_pred HHHHHHhCCchHHHHHHHHHHHhCCCCCcEEE----EeCCHHHHHHHHhcCCCEEEECCCC----------------HH-
Confidence 444553 34568889999998875 344554 4444455677889999999999884 21
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 577 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 577 laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
-+.++...+ +.++.|.+||||. ...+......|+|.+-+|.
T Consensus 226 -~l~~av~~~-----~~~~~leaSGgI~-~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 226 -DLREGVELV-----DGRAIVEASGNVN-LNTVGAIASTGVDVISVGA 266 (281)
T ss_pred -HHHHHHHHh-----CCCeEEEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 234444433 3467888999996 7778888899999887665
No 356
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=84.43 E-value=14 Score=42.75 Aligned_cols=161 Identities=15% Similarity=0.076 Sum_probs=85.4
Q ss_pred CceEEEccccccccHHHHHHhCCCCcc----------------cccccc----------c----------h-h--hccch
Q psy12805 1242 KGLRIQAARCMECGVPFCQSSHGCPLG----------------NIIPKW----------N----------D-L--IYHNN 1282 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~~Gc~V~----------------~iLp~~----------d----------~-l--vf~~e 1282 (1429)
-+++|||+|..|+-.+..++..|.+|- .+++.. + + . +-..+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 579999999999998888887777760 011110 0 0 0 01123
Q ss_pred HHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEe-------C---CCeeEEEecEEEEeccccCchhhh-hhcc
Q psy12805 1283 WSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEV-------P---NSEKIFKCDLVLLAMGFLGPERYI-ANEL 1349 (1429)
Q Consensus 1283 ~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~-------~---gse~~ieaDlVLlAiG~~pp~~~L-le~l 1349 (1429)
+...+.+..++.| +..+..+..+... ++|++.-+.. . .+..++.|+.||.|+|...+.... .+..
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~--~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILR--EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEe--CCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 3344444445555 4446666666432 2333321111 1 133579999999999976443322 2221
Q ss_pred C---ccc-cC------CC-CEEecCCCCccCCCCEEEeCCCCC----CCC---cHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 D---LTL-DP------RS-NYSTVEKTYLTTVPRVYAAGDCRR----GQS---LVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 G---Lel-d~------~G-~I~VD~~~~~TSvPgVFAAGD~a~----g~~---lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
. ... .. +| ...|+. +.+ =.||+|++|=.+. .|. ..--=.-.|++||+.|...|..
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~-t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVEN-TGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCcccccCCccccccCchHHHHHhc-CCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 1 111 00 11 111221 122 2799999995542 221 1112235799999999988764
No 357
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.29 E-value=1.6 Score=55.87 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCEEecCCCCccC-CCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLTT-VPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~TS-vPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|.|.||. ..+|+ +||+||||+|+. + ...+..|+-.|+.|+.++..++...
T Consensus 347 GGi~vd~-~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~ 406 (566)
T PRK06452 347 GGIDVDI-DGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKSN 406 (566)
T ss_pred CCeEECC-CCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5577886 66785 999999999964 2 2367889999999999999988643
No 358
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.13 E-value=5.6 Score=46.37 Aligned_cols=87 Identities=25% Similarity=0.286 Sum_probs=59.9
Q ss_pred HHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 512 ELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 512 qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
..+..+|+..| ..+|.|- +.--..+..+.++|+|+|.++... | ..+.++.+.+...
T Consensus 169 ~~v~~~r~~~~~~~~I~ve----v~t~eea~~A~~~gaD~I~ld~~~----------------~--e~l~~~v~~i~~~- 225 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVE----VETLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLLKGL- 225 (269)
T ss_pred HHHHHHHHhCCCCCeEEEe----cCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHhccC-
Confidence 46788888765 4555554 323345666788999999997653 1 2334444443221
Q ss_pred CCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
.+++|.++|||. ...+...+..|||.+.+|+
T Consensus 226 --~~i~i~asGGIt-~~ni~~~a~~Gad~Isvga 256 (269)
T cd01568 226 --PRVLLEASGGIT-LENIRAYAETGVDVISTGA 256 (269)
T ss_pred --CCeEEEEECCCC-HHHHHHHHHcCCCEEEEcH
Confidence 378999999997 7788889999999887754
No 359
>PRK09077 L-aspartate oxidase; Provisional
Probab=83.96 E-value=1.3 Score=56.17 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=38.6
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||+|+. + ...+..|+-.|+.|++++..+..
T Consensus 354 GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 354 GGVMVDL-HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred CCeeECC-CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 4577886 78899999999999863 2 24567889999999999988753
No 360
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=83.94 E-value=7.2 Score=47.25 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhc-CCcE--EEEecCCCCC--C-ccc---cccccccCCChHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG-KAEH--IVISGHDGGT--G-ASS---WTGIKNAGLPWELGV 579 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~aka-GaD~--I~IsG~~GGT--g-aap---~~~~~~~GiP~~laL 579 (1429)
|+.+.+..+++..|..|+.+=+--.-..-..|..++++ |.|+ |.||-.+.-- . .+. +......|+.. ..+
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~-~l~ 266 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNP-ELI 266 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccccccccH-HHH
Confidence 45667778888888777665433111233445556777 8888 8777531100 0 000 00012345554 446
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc--chhhhcchh
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG--ADEIGLSTA 625 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG--Adavg~gt~ 625 (1429)
.++.+.|...|.. ++.|++|||| +...+......| .|.||+||.
T Consensus 267 ~~vr~~Ld~~g~~-~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~ 312 (352)
T PRK07188 267 KALRKALDENGGK-HVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSS 312 (352)
T ss_pred HHHHHHHhhCCCC-CcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcc
Confidence 7888889888864 6999999999 477788888889 499999994
No 361
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=83.82 E-value=8.3 Score=48.07 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=79.8
Q ss_pred CceEEEccccccccHHHHHHhCCCC-c---------------------ccccccc----chhhc--------cchHHHHH
Q psy12805 1242 KGLRIQAARCMECGVPFCQSSHGCP-L---------------------GNIIPKW----NDLIY--------HNNWSEAL 1287 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~~Gc~-V---------------------~~iLp~~----d~lvf--------~~e~~~al 1287 (1429)
.+++|||||+-|+.++.++.+.|.+ + ....|.| ...-| ..++.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5799999999999999999988777 4 0011111 00011 12367888
Q ss_pred HHHHHhCC----CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccCchhhhhhccCccccCCCCEEecC
Q psy12805 1288 NQLLQTNN----FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVE 1363 (1429)
Q Consensus 1288 ~~~Le~~G----~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld~~G~I~VD~ 1363 (1429)
...++..+ ++....+..+.+.++ ...|......+...++.+|.||+|+|.- ....+..=.|++.- .|.+.-..
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~-~~P~iP~~~G~~~f-~g~~~HS~ 165 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHL-SEPYIPDFAGLDEF-KGRILHSA 165 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCC-CCCCCCCCCCccCC-CceEEchh
Confidence 88888776 334455555666432 3356655544443337899999999974 33333443455432 34443211
Q ss_pred C---CCccCCCCEEEeCCCC
Q psy12805 1364 K---TYLTTVPRVYAAGDCR 1380 (1429)
Q Consensus 1364 ~---~~~TSvPgVFAAGD~a 1380 (1429)
. ...-.-+.|-++|--.
T Consensus 166 ~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 166 DWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred cCCCccccCCCeEEEECCCc
Confidence 1 1233556788888443
No 362
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=83.73 E-value=4.3 Score=45.87 Aligned_cols=64 Identities=17% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCc--ccHHH----HHHHH
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQI--RTGFD----VVVAA 613 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGI--rtg~D----v~kAl 613 (1429)
+..+.++|||+|-++.. + + ...+.++.+. .+++++++||+ .|..| +..++
T Consensus 149 ~~~a~~~GaD~Ik~~~~-~-------------~---~~~~~~i~~~-------~~~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 149 ARIGAELGADIVKTKYT-G-------------D---AESFKEVVEG-------CPVPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred HHHHHHHCCCEEEecCC-C-------------C---HHHHHHHHhc-------CCCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 45577899999998521 1 1 1223333221 24678888987 56666 67789
Q ss_pred HhcchhhhcchhHH
Q psy12805 614 LLGADEIGLSTAPL 627 (1429)
Q Consensus 614 aLGAdavg~gt~~L 627 (1429)
.+||+.+.+|++.+
T Consensus 205 ~~Ga~gv~vg~~i~ 218 (235)
T cd00958 205 EAGAAGVAVGRNIF 218 (235)
T ss_pred HcCCcEEEechhhh
Confidence 99999998888665
No 363
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=83.67 E-value=5.4 Score=44.61 Aligned_cols=94 Identities=22% Similarity=0.158 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEE--EEecCCCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHI--VISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I--~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
++.++|...|. |+.-+..-.+ .-..+.-+.++|+|+| ++||+-+- ++ ..--|-...+..+.+
T Consensus 115 ~~~~~i~~~k~--~~~l~MAD~S----t~ee~l~a~~~G~D~IGTTLsGYT~~---~~-----~~~~pDf~lvk~l~~-- 178 (229)
T COG3010 115 DLEELIARIKY--PGQLAMADCS----TFEEGLNAHKLGFDIIGTTLSGYTGY---TE-----KPTEPDFQLVKQLSD-- 178 (229)
T ss_pred hHHHHHHHhhc--CCcEEEeccC----CHHHHHHHHHcCCcEEecccccccCC---CC-----CCCCCcHHHHHHHHh--
Confidence 56666766543 3333332211 1123445789999999 77888542 11 111233333333322
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
. .+.+|+-|.+.|+.++.+++.+||++|-+|+
T Consensus 179 --~----~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 179 --A----GCRVIAEGRYNTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred --C----CCeEEeeCCCCCHHHHHHHHHhCCeEEEECc
Confidence 3 5789999999999999999999999998777
No 364
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=83.67 E-value=2.6 Score=47.63 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=31.1
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
.++++++||++|..|+.++..+||+++-+|++++
T Consensus 184 ~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 184 EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 5899999999999999999889999999998655
No 365
>PLN02591 tryptophan synthase
Probab=83.67 E-value=22 Score=41.20 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
.+|+..+++..+++. +...+.=+.+...-..+ ..+++..-.+|-+-+..|-||.. .++|.. +.+..+.
T Consensus 116 P~ee~~~~~~~~~~~--gl~~I~lv~Ptt~~~ri-~~ia~~~~gFIY~Vs~~GvTG~~-------~~~~~~--~~~~i~~ 183 (250)
T PLN02591 116 PLEETEALRAEAAKN--GIELVLLTTPTTPTERM-KAIAEASEGFVYLVSSTGVTGAR-------ASVSGR--VESLLQE 183 (250)
T ss_pred CHHHHHHHHHHHHHc--CCeEEEEeCCCCCHHHH-HHHHHhCCCcEEEeeCCCCcCCC-------cCCchh--HHHHHHH
Confidence 357778888888775 34444433344433333 33444456777776666666643 234432 3333334
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
+++. .+++|.+--||+|+.|+.+++.+|||.|-+|++.+-..
T Consensus 184 vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 184 LKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 4332 47899999999999999999999999999999765433
No 366
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=83.46 E-value=25 Score=40.06 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=45.6
Q ss_pred HHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhh
Q psy12805 541 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 620 (1429)
Q Consensus 541 ~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdav 620 (1429)
..++++||++|-. .-|. +++.|....-.+.+..+.+..++.. ..|+ ..-+|+..+|..++++||+.+
T Consensus 120 ~~Aa~aGa~yvsP--yvgR--------i~d~g~D~~~~i~~i~~~~~~~~~~--tkIL-aAS~r~~~~v~~a~~~G~d~v 186 (222)
T PRK12656 120 LLAIEAGADYLAP--YYNR--------MENLNIDSNAVIGQLAEAIDRENSD--SKIL-AASFKNVAQVNKAFALGAQAV 186 (222)
T ss_pred HHHHHCCCCEEec--ccch--------hhhcCCCHHHHHHHHHHHHHhcCCC--CEEE-EEecCCHHHHHHHHHcCCCEE
Confidence 3467789887643 2222 3445554445566777777776654 3444 345999999999999998877
Q ss_pred hcc
Q psy12805 621 GLS 623 (1429)
Q Consensus 621 g~g 623 (1429)
=+.
T Consensus 187 Tvp 189 (222)
T PRK12656 187 TAG 189 (222)
T ss_pred ecC
Confidence 433
No 367
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=83.25 E-value=2.8 Score=54.84 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=71.1
Q ss_pred HHHHhhccCCCCCC----CCCCCCc----ccccccccccchHhHHHHHHhhhcccCCCCCCCccceeeccCCCCCchHHH
Q psy12805 12 EFRLLAEKCQLEVL----GQHENTR----KCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAA 83 (1429)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~----r~~~hngeint~~gn~~~~~ar~~~~~~~~~~~~~~~~p~~~~~~sds~~~ 83 (1429)
...+.|.||.|.=. +.|||.. =.|+|||||---+--++...++-..+ ...||+.-+
T Consensus 98 ~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f----------------~s~tDtEvi 161 (670)
T PTZ00394 98 HVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHF----------------SSDTDTEVI 161 (670)
T ss_pred CEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEe----------------cCCChHHHH
Confidence 46789999999864 5688643 14799999986666655554332222 346777755
Q ss_pred HHHHHhhCccccccCCCCCHHHHHHHHHHhhccCCCCcceEEEEE----cCCeEEEecccCCCCCCcEEEEeC-------
Q psy12805 84 DCAVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFT----DGRYIGAILDRNGLRPSRFYVLKD------- 152 (1429)
Q Consensus 84 d~a~~~~~p~a~~~~~~~~~~~~~~y~~~~~~~epwdgpa~~~~~----dg~~~ga~ldrnglrp~r~~~~~d------- 152 (1429)
-. |+=..|..... . +|.+-...+++-.+|=.++++- .++.+++ |+| ||. ++-..+
T Consensus 162 ~~----li~~~~~~~g~-~----~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~---Rd~-~PL-~iG~~~~~~~~~~ 227 (670)
T PTZ00394 162 SV----LSEYLYTRKGI-H----NFADLALEVSRMVEGSYALLVKSVYFPGQLAAS---RKG-SPL-MVGIRRTDDRGCV 227 (670)
T ss_pred HH----HHHHHHHhcCC-C----CHHHHHHHHHHHccCceEEEEEecCCCCEEEEE---EcC-Cce-EEEeccccccccc
Confidence 43 22112221110 0 2333334445556777777764 3555555 334 897 544444
Q ss_pred --------------CEEEEEeecccc
Q psy12805 153 --------------NVMVMASEVGVY 164 (1429)
Q Consensus 153 --------------~~~~~~se~g~~ 164 (1429)
+.+++|||+-.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~aSd~~a~ 253 (670)
T PTZ00394 228 MKLQTYDLTDLSGPLEVFFSSDVNSF 253 (670)
T ss_pred cccccccccccCCCCcEEEEeChHHH
Confidence 468888886654
No 368
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.18 E-value=1.5 Score=56.29 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=40.2
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCC--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRG--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.||. ..+|++||+||||+|+.+ ...+..|+-.|+.|+.++..++..
T Consensus 356 GGi~vd~-~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 356 GGLWVDY-DQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred CCeEECC-CCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5588886 678999999999999742 245678999999999999988754
No 369
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=83.17 E-value=2.4 Score=48.97 Aligned_cols=69 Identities=13% Similarity=-0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc
Q psy12805 537 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 616 (1429)
Q Consensus 537 g~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG 616 (1429)
-..|..-.++||+.|.|-+- |. |-...+.++.+.+ .++|++.||||+ .|+-+.+.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-g~--------------~n~~~i~~i~~~~-------~~~v~vGGGIr~-e~v~~~l~aG 97 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-GP--------------NNDDAAKEALHAY-------PGGLQVGGGIND-TNAQEWLDEG 97 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-CC--------------CcHHHHHHHHHhC-------CCCEEEeCCcCH-HHHHHHHHcC
Confidence 55788889999999988777 22 2223344443332 478999999998 9999999999
Q ss_pred chhhhcchhHHH
Q psy12805 617 ADEIGLSTAPLI 628 (1429)
Q Consensus 617 Adavg~gt~~L~ 628 (1429)
|+.|.+||.++-
T Consensus 98 a~rVvIGS~av~ 109 (253)
T TIGR02129 98 ASHVIVTSWLFT 109 (253)
T ss_pred CCEEEECcHHHh
Confidence 999999996553
No 370
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.11 E-value=3.3 Score=46.89 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=53.7
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-..+..+.+.|++.|.+-+.++.. +... .-...+.++.+. ..++|++.|||++..|+..++.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~--------~~~~-~~~~~i~~i~~~-------~~~~l~v~GGi~~~~~~~~~~~ 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF--------EGER-KNAEAIEKIIEA-------VGVPVQLGGGIRSAEDAASLLD 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh--------cCCc-ccHHHHHHHHHH-------cCCcEEEcCCcCCHHHHHHHHH
Confidence 45567777888999999888776431 1111 112233333222 2588999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+.|-+|+..+
T Consensus 97 ~Ga~~v~iGs~~~ 109 (241)
T PRK13585 97 LGVDRVILGTAAV 109 (241)
T ss_pred cCCCEEEEChHHh
Confidence 9999998888543
No 371
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=82.93 E-value=5 Score=44.43 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=28.0
Q ss_pred ceEEEEcCCcccHHHHHHHHHhc-chhhhcchhHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPL 627 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLG-Adavg~gt~~L 627 (1429)
++++++.||| |+.++..++..| ++.+-+.+...
T Consensus 152 ~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 152 RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence 5799999999 899999999988 88887777433
No 372
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=82.89 E-value=1.8 Score=55.78 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQ--------SLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g~--------~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.+|. ..+|++||+||||+|+.+. ..+..++-.|+.|+.++..++.+
T Consensus 371 gG~~~d~-~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~ 427 (603)
T TIGR01811 371 GGLWVDY-DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYLG 427 (603)
T ss_pred CCeeECC-CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5577886 7899999999999996431 35677888899999999888643
No 373
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.55 E-value=4.6 Score=48.37 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEEecc-ccChHHHHHHHHh--cCCcEEEEecCCCCCCccccccccccCCChHHH
Q psy12805 502 HDIYSIEDLAELIYDLKCANPNARISVKLVS-EVGVGVVASGVAK--GKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 578 (1429)
Q Consensus 502 ~di~siedL~qlI~~Lk~~~~~~pV~VKLv~-e~Gvg~vA~~~ak--aGaD~I~IsG~~GGTgaap~~~~~~~GiP~~la 578 (1429)
|-++++|++++.++..+... ...+.|-+.. +.... .+..+.+ +|+|+|+||-..|.+ .-.+..
T Consensus 76 Hk~~~~e~~~~fv~~~~~~~-~~~~~vavG~~~~d~e-r~~~L~~~~~g~D~iviD~AhGhs------------~~~i~~ 141 (346)
T PRK05096 76 HKHYSVEEWAAFVNNSSADV-LKHVMVSTGTSDADFE-KTKQILALSPALNFICIDVANGYS------------EHFVQF 141 (346)
T ss_pred ecCCCHHHHHHHHHhccccc-cceEEEEecCCHHHHH-HHHHHHhcCCCCCEEEEECCCCcH------------HHHHHH
Confidence 55789999999988877431 1233332111 11222 3344565 599999999887763 112223
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhh
Q psy12805 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 620 (1429)
Q Consensus 579 L~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdav 620 (1429)
+..+.+.+ .++.|| .|-+-|+.-+...+..|||++
T Consensus 142 ik~ik~~~------P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 142 VAKAREAW------PDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred HHHHHHhC------CCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 33333322 235555 599999997777889999975
No 374
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.40 E-value=3.5 Score=47.33 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCcEEEEe--cCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 538 VVASGVAKGKAEHIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~Is--G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
..+..+.+.|+..|++. +++|. ..|....+ +.++.+. .+++||++||+++..|+.++..+
T Consensus 148 e~~~~~~~~g~~~ii~tdI~rdGt----------~~G~d~el-~~~l~~~-------~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 148 SLLKRLKEYGLEEIVHTEIEKDGT----------LQEHDFSL-TRKIAIE-------AEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred HHHHHHHhcCCCEEEEEeechhhc----------CCCcCHHH-HHHHHHH-------CCCCEEEECCCCCHHHHHHHHhc
Confidence 34555667788777776 34443 34444433 3444332 26899999999999999999887
Q ss_pred -----c-chhhhcchhHH
Q psy12805 616 -----G-ADEIGLSTAPL 627 (1429)
Q Consensus 616 -----G-Adavg~gt~~L 627 (1429)
| ++.+=+|++.+
T Consensus 210 ~~~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 210 HRETNGLLKGVIVGRAFL 227 (241)
T ss_pred ccccCCcEEEEEEehHHH
Confidence 6 88787777544
No 375
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.35 E-value=1.9 Score=55.29 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCEEecCCCCccC------CCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLTT------VPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~TS------vPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|.|.||. ..+|+ +||+||||+|+. + ...+.+|+-.|+.|++++..++...
T Consensus 353 GGi~vd~-~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~~ 417 (577)
T PRK06069 353 GGIHTDV-YGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALKR 417 (577)
T ss_pred CCceECC-CCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566775 67777 999999999974 2 2456789999999999999887643
No 376
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=82.34 E-value=1.7 Score=54.48 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=38.2
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||+|+. + ...+..|+-.|+.|++++..+..
T Consensus 334 GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~~ 390 (488)
T TIGR00551 334 GGISVDD-HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRPP 390 (488)
T ss_pred CCEEECC-CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 5588886 78899999999999963 2 23567788899999999987653
No 377
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=82.29 E-value=5.7 Score=47.16 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHh------cCCcEEEEecCCCCCCccccccccccCCChHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAK------GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 579 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~ak------aGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL 579 (1429)
+++.. +..+|+..+..+...|+..|+.--..+..+++ +|+|+|.+|+..-. .++... ...-+
T Consensus 185 ~i~~a---v~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~--------~~~~~~-~~e~l 252 (308)
T PLN02716 185 GITNA---VQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVP--------LENGDV-DVSML 252 (308)
T ss_pred CHHHH---HHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccc--------ccccCC-CHHHH
Confidence 45554 44444421222334555556655566777889 99999999998211 011111 22334
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 580 ~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
.++...+ +.++.|.+||||. ...+......|.|.+-+|.
T Consensus 253 ~~av~~~-----~~~~~lEaSGGIt-~~ni~~yA~tGVD~Is~Ga 291 (308)
T PLN02716 253 KEAVELI-----NGRFETEASGNVT-LDTVHKIGQTGVTYISSGA 291 (308)
T ss_pred HHHHHhh-----CCCceEEEECCCC-HHHHHHHHHcCCCEEEeCc
Confidence 4444432 3467899999997 7778888999999887665
No 378
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.28 E-value=4.8 Score=47.31 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
+.+.|+.+|+..| ..+|.| |+..-..+..++++|+|+|.+|+.. | .-+.++.+.+
T Consensus 180 i~~ai~~~r~~~~~~~kIeV----Ev~tleea~ea~~~gaDiI~LDn~s----------------~--e~l~~av~~~-- 235 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV----EVDTLDQLEEALELGVDAVLLDNMT----------------P--DTLREAVAIV-- 235 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE----EeCCHHHHHHHHHcCCCEEEeCCCC----------------H--HHHHHHHHHh--
Confidence 6678888888765 344444 4555556778899999999999884 1 2244444433
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.+..|.+||||. ...+......|.|.+.+|.
T Consensus 236 ---~~~~~leaSGGI~-~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 236 ---AGRAITEASGRIT-PETAPAIAASGVDLISVGW 267 (281)
T ss_pred ---CCCceEEEECCCC-HHHHHHHHhcCCCEEEeCh
Confidence 3456789999996 6778888999999888776
No 379
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.16 E-value=2.8 Score=47.67 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCC-ChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL-PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~Gi-P~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.-..|....+. ++.|.+-+.+|.. .|. |-...+.++.+. ..++|+++|||||-.|+.+++.
T Consensus 32 p~~~a~~~~~~-~~~l~ivDldga~----------~g~~~n~~~i~~i~~~-------~~~pv~~gGGIrs~edv~~l~~ 93 (228)
T PRK04128 32 PVEIALRFSEY-VDKIHVVDLDGAF----------EGKPKNLDVVKNIIRE-------TGLKVQVGGGLRTYESIKDAYE 93 (228)
T ss_pred HHHHHHHHHHh-CCEEEEEECcchh----------cCCcchHHHHHHHHhh-------CCCCEEEcCCCCCHHHHHHHHH
Confidence 44456666666 8877776666431 122 222233333322 2578999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+.+-+||..+
T Consensus 94 ~G~~~vivGtaa~ 106 (228)
T PRK04128 94 IGVENVIIGTKAF 106 (228)
T ss_pred CCCCEEEECchhc
Confidence 9999887787543
No 380
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.84 E-value=3.9 Score=46.70 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=51.1
Q ss_pred HHHHHHHHh-cCCcEEEEecCCCCCCccccccccccCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 537 GVVASGVAK-GKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 537 g~vA~~~ak-aGaD~I~IsG~~GGTgaap~~~~~~~GiP-~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
-..|+...+ .|||.|.|-+-++.- .|-+ -...+.++.+. ..++|++.|||||-.|+-+.+.
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~----------~~~~~n~~~I~~i~~~-------~~~pi~vGGGIrs~e~v~~~l~ 96 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAK----------AQHAREFDYIKSLRRL-------TTKDIEVGGGIRTKSQIMDYFA 96 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccc----------cCCcchHHHHHHHHhh-------cCCeEEEcCCcCCHHHHHHHHH
Confidence 346666677 699988777665431 1111 12223444332 2579999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+-+-+||.++
T Consensus 97 ~Ga~kvvigt~a~ 109 (234)
T PRK13587 97 AGINYCIVGTKGI 109 (234)
T ss_pred CCCCEEEECchHh
Confidence 9999998888544
No 381
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=81.63 E-value=2.8 Score=45.02 Aligned_cols=75 Identities=19% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHh
Q psy12805 538 VVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 615 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaL 615 (1429)
..+..+.+.|+|+|.++-.. +.++.. ...|. ...+.++.+. ..++++++|||. ..++..++.+
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~~pv~a~GGi~-~~~i~~~~~~ 170 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPG-------AGPPLGLELLREIAEL-------VEIPVVAIGGIT-PENAAEVLAA 170 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCC-------CCCCCCHHHHHHHHHh-------CCCCEEEECCCC-HHHHHHHHHc
Confidence 34556778899999987442 111110 00111 1222322221 258999999995 6889999999
Q ss_pred cchhhhcchhHH
Q psy12805 616 GADEIGLSTAPL 627 (1429)
Q Consensus 616 GAdavg~gt~~L 627 (1429)
||+.+.+|++.+
T Consensus 171 Ga~~i~~g~~i~ 182 (196)
T cd00564 171 GADGVAVISAIT 182 (196)
T ss_pred CCCEEEEehHhh
Confidence 999999998654
No 382
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=81.48 E-value=5.1 Score=45.51 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=47.1
Q ss_pred HHHHHHhcCCcEEEEe--cCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhc
Q psy12805 539 VASGVAKGKAEHIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 616 (1429)
Q Consensus 539 vA~~~akaGaD~I~Is--G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLG 616 (1429)
-|+.+.+.||-=|.|. +++|. ..|-..++ +..+...+ +||+|+|||.-+..|++.++..|
T Consensus 160 Wa~~~e~~GAGEIlLtsmD~DGt----------k~GyDl~l-~~~v~~~v-------~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 160 WAKEVEELGAGEILLTSMDRDGT----------KAGYDLEL-TRAVREAV-------NIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred HHHHHHHcCCceEEEeeeccccc----------ccCcCHHH-HHHHHHhC-------CCCEEecCCCCcHHHHHHHHHhc
Confidence 4566788899888887 44443 44544432 23333332 79999999999999999999888
Q ss_pred -chhhhcc
Q psy12805 617 -ADEIGLS 623 (1429)
Q Consensus 617 -Adavg~g 623 (1429)
||++-.+
T Consensus 222 ~adAaLAA 229 (256)
T COG0107 222 KADAALAA 229 (256)
T ss_pred CccHHHhh
Confidence 8877433
No 383
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=81.20 E-value=8.4 Score=46.13 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
++++++.+.+..+|.. ..+.+=+.........+..+.++|+|+|.|+-..|.. -.+...+.+
T Consensus 67 ~~~~~~~~~i~~vk~~---l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~------------~~~~~~i~~--- 128 (325)
T cd00381 67 MSIEEQAEEVRKVKGR---LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS------------VYVIEMIKF--- 128 (325)
T ss_pred CCHHHHHHHHHHhccC---ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc------------HHHHHHHHH---
Confidence 3567777777777632 2222221111123345677889999999998765431 112222333
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhc
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 622 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~ 622 (1429)
+++.. ..++|++ |.+.|..++.+++.+|||++-+
T Consensus 129 -ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 129 -IKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred -HHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 33322 1467776 9999999999999999998754
No 384
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.10 E-value=5.2 Score=50.64 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=62.6
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCcccccc----------ccchh-----hccchHHHHHHHHHHhCC--CCCCcEE
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPLGNIIP----------KWNDL-----IYHNNWSEALNQLLQTNN--FPAGIKT 1302 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp----------~~d~l-----vf~~e~~~al~~~Le~~G--~~~gv~v 1302 (1429)
.+.+++|||||.-|+..|...++.|.+|..+.. .+... ....++.+.+.+.++..+ +..+.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 346799999999999999999998888832211 01000 123456677777777776 4456677
Q ss_pred EEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1303 ~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
..+... ++.+... ..+. ..+.+|.|++|+|..+
T Consensus 291 ~~I~~~---~~~~~v~-~~~g-~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 291 KKIETE---DGLIVVT-LESG-EVLKAKSVIVATGARW 323 (515)
T ss_pred EEEEec---CCeEEEE-ECCC-CEEEeCEEEECCCCCc
Confidence 777532 2333332 3332 3699999999999874
No 385
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=80.98 E-value=15 Score=42.66 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcc--cHHHHHHH----H
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIR--TGFDVVVA----A 613 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIr--tg~Dv~kA----l 613 (1429)
+..+.+.|||+|..+ ..| + ...+.++.+. .++++.++|||+ |..|+... +
T Consensus 166 ~~~a~e~GAD~vKt~-~~~---------------~-~~~l~~~~~~-------~~ipV~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 166 ARVAAELGADIVKTN-YTG---------------D-PESFREVVEG-------CPVPVVIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred HHHHHHHCCCEEeeC-CCC---------------C-HHHHHHHHHh-------CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455778999999765 211 0 1223332221 258999999999 66666444 5
Q ss_pred HhcchhhhcchhH
Q psy12805 614 LLGADEIGLSTAP 626 (1429)
Q Consensus 614 aLGAdavg~gt~~ 626 (1429)
..||+.+.+|+..
T Consensus 222 ~aGA~Gis~gr~i 234 (267)
T PRK07226 222 EAGAAGVAVGRNV 234 (267)
T ss_pred HcCCcEEehhhhh
Confidence 9999955555543
No 386
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=80.95 E-value=3.5 Score=50.47 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=54.2
Q ss_pred ceEEEccccccccHHHHHHhCCCCcccc------------------------------------------------c---
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPLGNI------------------------------------------------I--- 1271 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V~~i------------------------------------------------L--- 1271 (1429)
+++|||||.-|||.|+..++.|++|..+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999988887111 0
Q ss_pred --cc-cch--hhccchHHHHHHHHHHhCC-CC-CCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccc
Q psy12805 1272 --PK-WND--LIYHNNWSEALNQLLQTNN-FP-AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF 1338 (1429)
Q Consensus 1272 --p~-~d~--lvf~~e~~~al~~~Le~~G-~~-~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~ 1338 (1429)
|. +.. .+-...+++.+++.+++.. +. ...++..+.. +++++.-+...+ .+.+.+|.||+|+|.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~---e~~~v~GV~~~~-g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIV---ENGKVKGVVTKD-GEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEE---CTTEEEEEEETT-SEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEe---cCCeEEEEEeCC-CCEEecCEEEEeccc
Confidence 11 101 0111346666777776632 11 1234444433 356655555544 447999999999998
No 387
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.64 E-value=3.2 Score=45.65 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=28.7
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
.+++++.||| |..++...+..||+++++++..
T Consensus 143 ~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 143 QVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred CCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhc
Confidence 4899999999 8999999999999999888743
No 388
>PRK07512 L-aspartate oxidase; Provisional
Probab=80.43 E-value=2 Score=54.42 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|.|.||. ..+|++||+||||+|+. + ......|+-.|+.|++++..+...
T Consensus 342 GGi~vd~-~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~ 399 (513)
T PRK07512 342 GGIAVDA-DGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA 399 (513)
T ss_pred CCEEECC-CCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577886 67899999999999863 2 135677888999999999887643
No 389
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=80.33 E-value=2.8 Score=46.94 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=29.4
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
.+++++.||| |..++...+..||+.+++++..+
T Consensus 151 ~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 151 DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 5899999999 78999999999999999888554
No 390
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=80.22 E-value=6.9 Score=44.88 Aligned_cols=74 Identities=27% Similarity=0.218 Sum_probs=52.9
Q ss_pred hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 536 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.-..|..-.+.||..|.+-+-+|- +.|-|- ..++.++.+.+ .++|++.|||||-.++...+.
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA----------~~g~~~n~~~i~~i~~~~-------~~~vQvGGGIRs~~~v~~ll~ 95 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGA----------KAGGPRNLEAIKEILEAT-------DVPVQVGGGIRSLEDVEALLD 95 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeecccc----------ccCCcccHHHHHHHHHhC-------CCCEEeeCCcCCHHHHHHHHH
Confidence 344677778889987776555443 112232 24455555543 689999999999999999999
Q ss_pred hcchhhhcchhH
Q psy12805 615 LGADEIGLSTAP 626 (1429)
Q Consensus 615 LGAdavg~gt~~ 626 (1429)
+|++.|=+||.+
T Consensus 96 ~G~~rViiGt~a 107 (241)
T COG0106 96 AGVARVIIGTAA 107 (241)
T ss_pred CCCCEEEEecce
Confidence 999999888844
No 391
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=80.19 E-value=2.1 Score=55.75 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCEEecCCCCcc-CCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1357 SNYSTVEKTYLT-TVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1357 G~I~VD~~~~~T-SvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|.|.||. ..+| ++||+||||+|+. + ...+..|+-.|+.|+.++..++...
T Consensus 373 GGi~vd~-~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~ 432 (657)
T PRK08626 373 GGIRTNP-TGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGN 432 (657)
T ss_pred CCceECC-CCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4477776 6788 5999999999964 1 2356789999999999999987653
No 392
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.91 E-value=12 Score=44.39 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHH
Q psy12805 506 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 585 (1429)
Q Consensus 506 siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~ 585 (1429)
++++ .++.+|+..+..+|.| |+.--..+..++++|||+|.+|+.. |- -+.++...
T Consensus 191 ~i~~---av~~~r~~~~~~kIeV----Evetleea~eA~~aGaDiImLDnms----------------pe--~l~~av~~ 245 (294)
T PRK06978 191 GVGA---ALDAAFALNAGVPVQI----EVETLAQLETALAHGAQSVLLDNFT----------------LD--MMREAVRV 245 (294)
T ss_pred CHHH---HHHHHHHhCCCCcEEE----EcCCHHHHHHHHHcCCCEEEECCCC----------------HH--HHHHHHHh
Confidence 4554 4555555443334444 4444556777899999999999884 21 13344433
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+ +.++.|.+||||. ...+......|.|.+-+|.
T Consensus 246 ~-----~~~~~lEaSGGIt-~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 246 T-----AGRAVLEVSGGVN-FDTVRAFAETGVDRISIGA 278 (294)
T ss_pred h-----cCCeEEEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 2 3468899999996 7778888999999887665
No 393
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=79.85 E-value=12 Score=42.89 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=52.4
Q ss_pred hHHHHHHHHhcCCcEEEEec--CCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 536 VGVVASGVAKGKAEHIVISG--HDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 536 vg~vA~~~akaGaD~I~IsG--~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
+-..+....+.|+..|++++ .+|. -.|+-+ ..+.+..+.. ++++|+|||+++-.|+-.+.
T Consensus 149 ~~~l~~~~~~~g~~~ii~TdI~~DGt----------l~G~n~-~l~~~l~~~~-------~ipviaSGGv~s~~Di~~l~ 210 (241)
T COG0106 149 LEELAKRLEEVGLAHILYTDISRDGT----------LSGPNV-DLVKELAEAV-------DIPVIASGGVSSLDDIKALK 210 (241)
T ss_pred HHHHHHHHHhcCCCeEEEEecccccc----------cCCCCH-HHHHHHHHHh-------CcCEEEecCcCCHHHHHHHH
Confidence 44466777888888888774 3332 223443 3344554443 68999999999999998888
Q ss_pred Hh-cchhhhcchhHHH
Q psy12805 614 LL-GADEIGLSTAPLI 628 (1429)
Q Consensus 614 aL-GAdavg~gt~~L~ 628 (1429)
.+ |...+=+|++.|.
T Consensus 211 ~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 211 ELSGVEGVIVGRALYE 226 (241)
T ss_pred hcCCCcEEEEehHHhc
Confidence 88 8877777876654
No 394
>PRK08401 L-aspartate oxidase; Provisional
Probab=79.83 E-value=2.2 Score=53.32 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=36.6
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSF 1403 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~ 1403 (1429)
|.|.||. ..+|++||+||||+|+. + ...+..++-.|+.|++++...
T Consensus 311 GGi~vd~-~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 311 GGISVDT-FYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCEEECC-CCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 5688886 78899999999999963 2 135677888899999998764
No 395
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.49 E-value=4.2 Score=46.41 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHhcCCcEEEEe--cCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 540 ASGVAKGKAEHIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 540 A~~~akaGaD~I~Is--G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
+..+.+.|+.-|++. +++|. ..|...++ +..+.+ . .. +++++||+++-.|+.++..+|+
T Consensus 152 ~~~l~~~g~~~ii~tdI~~dGt----------~~G~d~el-~~~~~~----~---~~-~viasGGv~s~~Dl~~l~~~G~ 212 (232)
T PRK13586 152 IKKVNELELLGIIFTYISNEGT----------TKGIDYNV-KDYARL----I---RG-LKEYAGGVSSDADLEYLKNVGF 212 (232)
T ss_pred HHHHHhcCCCEEEEeccccccc----------CcCcCHHH-HHHHHh----C---CC-CEEEECCCCCHHHHHHHHHCCC
Confidence 444555666655555 34443 34566654 443322 1 12 3889999999999999999999
Q ss_pred hhhhcchhHH
Q psy12805 618 DEIGLSTAPL 627 (1429)
Q Consensus 618 davg~gt~~L 627 (1429)
+++-+|++.+
T Consensus 213 ~gvivg~Aly 222 (232)
T PRK13586 213 DYIIVGMAFY 222 (232)
T ss_pred CEEEEehhhh
Confidence 9998999766
No 396
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=79.38 E-value=12 Score=49.33 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHH
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 583 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~ 583 (1429)
+.+.++|.++++..++. +--+.|- +--......+.++|+++|=|-+++=.| +-+.. ..+.
T Consensus 143 ~L~~~~l~~l~~~a~~l--Gme~LvE----vh~~~el~~a~~~ga~iiGINnRdL~t----------f~vd~----~~t~ 202 (695)
T PRK13802 143 ALDDAQLKHLLDLAHEL--GMTVLVE----THTREEIERAIAAGAKVIGINARNLKD----------LKVDV----NKYN 202 (695)
T ss_pred hcCHHHHHHHHHHHHHc--CCeEEEE----eCCHHHHHHHHhCCCCEEEEeCCCCcc----------ceeCH----HHHH
Confidence 34557788888888776 3344443 323334566888999999999997443 22332 1222
Q ss_pred HHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHH
Q psy12805 584 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 629 (1429)
Q Consensus 584 q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~a 629 (1429)
+.+. -+...+.+|+-+||+|+.|+..+..+|||+|=+|++.|-+
T Consensus 203 ~L~~--~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 203 ELAA--DLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHh--hCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 2221 1234678889999999999999999999999999977654
No 397
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.32 E-value=2.9 Score=53.70 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=39.3
Q ss_pred CccccCCCCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+.+|.+|.+. +. ..|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 358 Gi~id~~~~v~-~~--~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 420 (583)
T PRK08205 358 GIPTTVDGEVL-RD--NTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYARG 420 (583)
T ss_pred CeeECCCceEe-cC--CCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666432 22 3588999999999864 2 235778899999999999988754
No 398
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.12 E-value=1.8 Score=51.80 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=26.6
Q ss_pred ccCCCceEEEccccccccHHHHHHhCCCCc
Q psy12805 1238 QHVRKGLRIQAARCMECGVPFCQSSHGCPL 1267 (1429)
Q Consensus 1238 ~~~pk~lvVIGaGcIgcE~a~c~s~~Gc~V 1267 (1429)
...+++++|+|+|+.|++.+..+++.|.++
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v 44 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEV 44 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcE
Confidence 346789999999999999999999888888
No 399
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=79.10 E-value=9.3 Score=39.99 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=54.5
Q ss_pred EeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHH
Q psy12805 529 KLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFD 608 (1429)
Q Consensus 529 KLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~D 608 (1429)
.+...+-...++..+.+.++|+|.||+..+.+ ...+.++.+.|.+.++. ++.|++ ||.....|
T Consensus 35 ~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~---------------~~~~~~~~~~L~~~g~~-~i~viv-GG~~~~~~ 97 (132)
T TIGR00640 35 VGPLFQTPEEIARQAVEADVHVVGVSSLAGGH---------------LTLVPALRKELDKLGRP-DILVVV-GGVIPPQD 97 (132)
T ss_pred ECCCCCCHHHHHHHHHHcCCCEEEEcCchhhh---------------HHHHHHHHHHHHhcCCC-CCEEEE-eCCCChHh
Confidence 33334445667788889999999999997542 33467788888888864 677776 66666778
Q ss_pred HHHHHHhcchhh
Q psy12805 609 VVVAALLGADEI 620 (1429)
Q Consensus 609 v~kAlaLGAdav 620 (1429)
......+|.+.+
T Consensus 98 ~~~l~~~Gvd~~ 109 (132)
T TIGR00640 98 FDELKEMGVAEI 109 (132)
T ss_pred HHHHHHCCCCEE
Confidence 888899997654
No 400
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=79.06 E-value=4.1 Score=46.39 Aligned_cols=76 Identities=20% Similarity=0.056 Sum_probs=52.9
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-..|....+.|+|.|.|-+-++-.+. -+-...+.++.+.. .+++++.||||+-.|+-+++.
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~----------~~n~~~i~~i~~~~-------~~~v~vgGGir~~edv~~~l~ 98 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGR----------GDNDEAIRELAAAW-------PLGLWVDGGIRSLENAQEWLK 98 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCC----------CccHHHHHHHHHhC-------CCCEEEecCcCCHHHHHHHHH
Confidence 3555778888889998888776532110 12223333333321 478999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+-|-+||..+
T Consensus 99 ~Ga~~viigt~~~ 111 (233)
T cd04723 99 RGASRVIVGTETL 111 (233)
T ss_pred cCCCeEEEcceec
Confidence 9999888888443
No 401
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.96 E-value=3.2 Score=53.21 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=32.8
Q ss_pred ccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1367 LTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1367 ~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
.|++||+||||+|+. + ...+.+|+-.|+.|+.++..++..
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 415 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQG 415 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999974 2 246788999999999999988754
No 402
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=78.91 E-value=5.3 Score=46.18 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=53.1
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-.+|....+.|++.|.+.+-++... .-+ |-...+.++.+. ..++|+++||+++-.|+.+++.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~--------~~~-~n~~~i~~i~~~-------~~~pv~~gGGi~s~~d~~~l~~ 94 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKR--------GSE-PNYELIENLASE-------CFMPLCYGGGIKTLEQAKKIFS 94 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcC--------CCc-ccHHHHHHHHHh-------CCCCEEECCCCCCHHHHHHHHH
Confidence 345577888899999998887754310 011 222333333322 2578999999999999999999
Q ss_pred hcchhhhcchhH
Q psy12805 615 LGADEIGLSTAP 626 (1429)
Q Consensus 615 LGAdavg~gt~~ 626 (1429)
+||+.+-+++..
T Consensus 95 ~G~~~vvigs~~ 106 (258)
T PRK01033 95 LGVEKVSINTAA 106 (258)
T ss_pred CCCCEEEEChHH
Confidence 999998888754
No 403
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.76 E-value=3.2 Score=53.52 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=40.5
Q ss_pred CccccCCCCEE-ecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYS-TVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~-VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
||.+|.++.+. .+.....|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 364 Gi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 430 (598)
T PRK09078 364 GIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKP 430 (598)
T ss_pred CcccCCCceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhhc
Confidence 45566666432 222234689999999999864 2 236778999999999999988753
No 404
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=78.76 E-value=2.6 Score=53.97 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=40.1
Q ss_pred CccccCCCCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
||.+|.+|.+..+.....|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 333 Gi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~~ 398 (565)
T TIGR01816 333 GIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKP 398 (565)
T ss_pred CceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566666443331123578999999999974 2 235678899999999999988753
No 405
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=78.62 E-value=25 Score=44.11 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHhCCC----CCCcEEEEEEEeecCCCceEEEEeCC--CeeEEEecEEEEeccc
Q psy12805 1281 NNWSEALNQLLQTNNF----PAGIKTVKVEWTKDATGRWKMDEVPN--SEKIFKCDLVLLAMGF 1338 (1429)
Q Consensus 1281 ~e~~~al~~~Le~~G~----~~gv~v~~Ve~~k~~~G~~~~v~~~g--se~~ieaDlVLlAiG~ 1338 (1429)
.++.++++...+..++ .++.+|.+|+.. ++.|......+ ...+..+|.||+|+|.
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~---~~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPV---DGKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeec---CCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 3577777777777664 357788888652 45676554332 2235689999999994
No 406
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.39 E-value=2.8 Score=54.50 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=36.7
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCCC--------CCcHHHHHHHHHHHHHH-HHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRRG--------QSLVVWAISEGRQAARE-IDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~g--------~~lvv~Ai~qGr~AA~n-I~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||+|+.+ ...+..|+-.|+.|+.. +..++.
T Consensus 407 GGi~vd~-~~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~ 463 (640)
T PRK07573 407 GGLWVDY-NLMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPYTIGNYLA 463 (640)
T ss_pred CCEEECC-CCccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHHHHHHHHH
Confidence 5578886 789999999999999753 23467788889988876 555553
No 407
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=77.98 E-value=23 Score=38.81 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCCh--HHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPW--ELGVAETHQV 585 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~--~laL~ev~q~ 585 (1429)
+..+.++.++.. +..+++=+.+...... .... ..++|+|.+.+.. |+|+. ..++ ..-+.++.+.
T Consensus 93 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~-~~~~d~i~~~~~~~g~tg~---------~~~~~~~~~i~~~~~~ 159 (211)
T cd00429 93 HLHRTIQLIKEL--GMKAGVALNPGTPVEV-LEPY-LDEVDLVLVMSVNPGFGGQ---------KFIPEVLEKIRKLREL 159 (211)
T ss_pred hHHHHHHHHHHC--CCeEEEEecCCCCHHH-HHHH-HhhCCEEEEEEECCCCCCc---------ccCHHHHHHHHHHHHH
Confidence 344556666654 4555554432222222 2222 2348999887654 44432 1232 1122233222
Q ss_pred HHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 586 L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
...+ +.+++++++|||+. .++..++..|||.+-+|++.+
T Consensus 160 ~~~~--~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 160 IPEN--NLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHhc--CCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 2111 22478999999996 888888999999998888554
No 408
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.97 E-value=13 Score=43.65 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCC-CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
+.+-+.++|+..+ ...|.|- +.--..+..+.++|+|+|.++. .|+ ..+.++.+.+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvs----v~tleea~~A~~~gaDyI~lD~---------------~~~---e~l~~~~~~~-- 229 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVE----TETEEQVREAVAAGADIIMFDN---------------RTP---DEIREFVKLV-- 229 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEE----eCCHHHHHHHHHcCCCEEEECC---------------CCH---HHHHHHHHhc--
Confidence 6778888888875 3344444 3233446667889999999842 111 3345554432
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcch
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt 624 (1429)
+.+++|.++||| |..++...+..|||.+.+|.
T Consensus 230 ---~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 230 ---PSAIVTEASGGI-TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred ---CCCceEEEECCC-CHHHHHHHHHcCCCEEEECh
Confidence 245889999999 68999999999999887765
No 409
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=77.91 E-value=23 Score=40.30 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHH--------------------HHHHHHhcCCcEEEEecCCCCCCcc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGV--------------------VASGVAKGKAEHIVISGHDGGTGAS 563 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~--------------------vA~~~akaGaD~I~IsG~~GGTgaa 563 (1429)
++.+++.+.-..|.+..| .|.||++... |+.. -|..++++||++|-.- -|.
T Consensus 63 ~d~e~mi~ea~~l~~~~~--ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR---- 134 (220)
T PRK12653 63 TTAEGMVNDARKLRSIIA--DIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNR---- 134 (220)
T ss_pred CCHHHHHHHHHHHHHhCC--CEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEee--cCh----
Confidence 345555555555555543 3777776532 3222 1222566788876432 122
Q ss_pred ccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 564 SWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 564 p~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
+++.|..-...+.++++.+...+.. ..|+ ...+|+.+|+..++++|||.+=+.
T Consensus 135 ----~~~~g~dg~~~i~~i~~~~~~~~~~--tkIL-aAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12653 135 ----IDAQGGSGIQTVTDLQQLLKMHAPQ--AKVL-AASFKTPRQALDCLLAGCESITLP 187 (220)
T ss_pred ----HhhcCCChHHHHHHHHHHHHhcCCC--cEEE-EEecCCHHHHHHHHHcCCCEEECC
Confidence 3455665556677788777666654 4444 356999999999999998877433
No 410
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.86 E-value=6.7 Score=49.66 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred CceEEEccccccccHHHHHHhCCCCccccccc----------cc-----hhhccchHHHHHHHHHHhCC--CCCCcEEEE
Q psy12805 1242 KGLRIQAARCMECGVPFCQSSHGCPLGNIIPK----------WN-----DLIYHNNWSEALNQLLQTNN--FPAGIKTVK 1304 (1429)
Q Consensus 1242 k~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~----------~d-----~lvf~~e~~~al~~~Le~~G--~~~gv~v~~ 1304 (1429)
-+++|||||.-|+..|.-.++.|..+..+.+. +. ......++.+.+.+.++..+ +..+.++..
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~ 291 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASK 291 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 47999999999999999998888877222111 10 01223467777888787777 344667777
Q ss_pred EEEeecCCCceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1305 VEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1305 Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
+... ++.+... ..+. .++.+|.|++|+|..+
T Consensus 292 I~~~---~~~~~V~-~~~g-~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 292 LEPA---AGLIEVE-LANG-AVLKAKTVILATGARW 322 (517)
T ss_pred EEec---CCeEEEE-ECCC-CEEEcCEEEECCCCCc
Confidence 7542 2333333 3333 3699999999999874
No 411
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=77.83 E-value=11 Score=42.95 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCC------------Cc---------cccccccc
Q psy12805 512 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGT------------GA---------SSWTGIKN 570 (1429)
Q Consensus 512 qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGT------------ga---------ap~~~~~~ 570 (1429)
+.|++||+..|+.|+.|||-++. .......+.++|+|.|++=...+.. |. .+....+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~-p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSN-PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 47788888878899999998543 4445577889999999885442210 00 00000000
Q ss_pred -------------------cCCChH-HHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 571 -------------------AGLPWE-LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 571 -------------------~GiP~~-laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
.|.++. ..+.++.+ +. .++..+.|.++|||+. ..+..+...|||.+-+|++
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~-~~--~~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRE-LR--KRYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSS 203 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEecHHHHHHHHH-HH--HhcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchH
Confidence 011110 11122222 11 1233578999999995 4677888999999888875
No 412
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=77.77 E-value=10 Score=43.80 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=51.2
Q ss_pred HHHHHHHHhC--CCCeEEEEecc------ccChHH---HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHH
Q psy12805 512 ELIYDLKCAN--PNARISVKLVS------EVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 580 (1429)
Q Consensus 512 qlI~~Lk~~~--~~~pV~VKLv~------e~Gvg~---vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ 580 (1429)
+.+..+++.. .++|+.|.+.+ ...... .+..+.++|||+|-++.. + -+..+.
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~-~----------------~~~~l~ 185 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT-G----------------DIDSFR 185 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC-C----------------CHHHHH
Confidence 4455554432 26787775331 111112 235567899999997511 0 122233
Q ss_pred HHHHHHHhcCCCCceEEEEcCCcc--cHHHH----HHHHHhcchhhhcchhHH
Q psy12805 581 ETHQVLALNNLRSRVVLQADGQIR--TGFDV----VVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 581 ev~q~L~~~gLR~~V~LiasGGIr--tg~Dv----~kAlaLGAdavg~gt~~L 627 (1429)
++.+. .++++.+.|||+ |..|+ ..++..||+.+.+++..+
T Consensus 186 ~~~~~-------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~ 231 (258)
T TIGR01949 186 DVVKG-------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF 231 (258)
T ss_pred HHHHh-------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh
Confidence 33221 258899999999 54444 445589999666555433
No 413
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=77.24 E-value=15 Score=42.13 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcC-CcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhc
Q psy12805 511 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 589 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaG-aD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~ 589 (1429)
.+.|+.|++. ++++.+-++=...-...|..+.++| +++|-.- -|. +++.|+.....+.++++.+..+
T Consensus 102 l~ai~~L~~~--GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispf--vgR--------~dd~g~D~~~~i~~i~~i~~~~ 169 (236)
T TIGR02134 102 GPLIQKLSAD--GITLNVTALTTIEQVEKVCQSFTDGVPGIVSVF--AGR--------IADTGVDPEPHMREALEIVAQK 169 (236)
T ss_pred HHHHHHHHHC--CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEe--cch--------hhhcCCCcHHHHHHHHHHHHhC
Confidence 3345555544 4666666553333333444456788 5777543 122 4466666666677777776554
Q ss_pred CCCCceEEEEcCCcccHHHHHHHHHhcchhh
Q psy12805 590 NLRSRVVLQADGQIRTGFDVVVAALLGADEI 620 (1429)
Q Consensus 590 gLR~~V~LiasGGIrtg~Dv~kAlaLGAdav 620 (1429)
.++.|++ .-+|+..++..++.+||+.+
T Consensus 170 ---~~tkILa-AS~R~~~~v~~a~~~Gad~v 196 (236)
T TIGR02134 170 ---PGVELLW-ASPRELFNIIQADRIGCDII 196 (236)
T ss_pred ---CCcEEEE-EccCCHHHHHHHHHcCCCEE
Confidence 2566664 45999999999999998876
No 414
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=77.02 E-value=3.6 Score=46.77 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=41.3
Q ss_pred cCCCCcceEEEEEcC--CeEEEecccCCCCCCcEEEEeCCEEEEEeeccccc
Q psy12805 116 MEPWDGPALLTFTDG--RYIGAILDRNGLRPSRFYVLKDNVMVMASEVGVYD 165 (1429)
Q Consensus 116 ~epwdgpa~~~~~dg--~~~ga~ldrnglrp~r~~~~~d~~~~~~se~g~~~ 165 (1429)
...-+|=-+++.-|. +.+-+..||.|.+|.=|..+.|+.+++|||.-.+.
T Consensus 122 l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~ 173 (224)
T cd01910 122 VKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVK 173 (224)
T ss_pred HHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhh
Confidence 344489999999886 67888899999999955556799999999988774
No 415
>PLN02815 L-aspartate oxidase
Probab=77.00 E-value=3.1 Score=53.64 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||+|+. + ...+..++--|+.|+..+..++.
T Consensus 378 GGi~vD~-~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~~ 434 (594)
T PLN02815 378 GGVRTGL-QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMA 434 (594)
T ss_pred CCeeECC-CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5577886 67899999999999964 2 23567788889999999887754
No 416
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=76.99 E-value=6.2 Score=45.38 Aligned_cols=72 Identities=26% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
.+....+.|+..+.|.+-++-.|.. +-...+.++.+.+ .++|+++|||||-.|+-.++.+||+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~g~~----------~n~~~i~~i~~~~-------~~~v~vgGGIrs~e~~~~~l~~Ga~ 98 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAFGGG----------NNEMMLEEVVKLL-------VVVEELSGGRRDDSSLRAALTGGRA 98 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCCCCc----------chHHHHHHHHHHC-------CCCEEEcCCCCCHHHHHHHHHcCCC
Confidence 3444567788888887776532111 1223344444432 4789999999999999999999999
Q ss_pred hhhcchhHH
Q psy12805 619 EIGLSTAPL 627 (1429)
Q Consensus 619 avg~gt~~L 627 (1429)
-|-+||.++
T Consensus 99 ~vvigT~a~ 107 (243)
T TIGR01919 99 RVNGGTAAL 107 (243)
T ss_pred EEEECchhh
Confidence 998888544
No 417
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=76.94 E-value=7.5 Score=49.91 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=73.7
Q ss_pred hHHHHhhccCCCceEEEcccc--ccccHHHHHHhCCCCcc------ccccccchh---------hccchHHHHHHHHHHh
Q psy12805 1231 WDEIYATQHVRKGLRIQAARC--MECGVPFCQSSHGCPLG------NIIPKWNDL---------IYHNNWSEALNQLLQT 1293 (1429)
Q Consensus 1231 ~~el~~l~~~pk~lvVIGaGc--IgcE~a~c~s~~Gc~V~------~iLp~~d~l---------vf~~e~~~al~~~Le~ 1293 (1429)
++++.++...++++.++|+++ +++++...+...++++. .+++.+++. ..+..+.+.+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 566677777889999999998 88999888888888873 333333210 1123466667777777
Q ss_pred CC--CCCCcEEEEEEEeecCCCceEEEEe--CCCeeEEEec-EEEEeccccCchhhhhh
Q psy12805 1294 NN--FPAGIKTVKVEWTKDATGRWKMDEV--PNSEKIFKCD-LVLLAMGFLGPERYIAN 1347 (1429)
Q Consensus 1294 ~G--~~~gv~v~~Ve~~k~~~G~~~~v~~--~gse~~ieaD-lVLlAiG~~pp~~~Lle 1347 (1429)
.| +.++..++++... ++++.-+.. .++...+.++ .||+|+|.-+.+..+++
T Consensus 227 ~Gv~i~~~~~v~~l~~~---~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 227 LGIPILTGTPARELLTE---GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred CCCEEEeCCEEEEEEee---CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 77 5667788877542 454432222 2333467886 79999997765544433
No 418
>KOG1606|consensus
Probab=76.49 E-value=5.7 Score=44.25 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.3
Q ss_pred ceEEE--EcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 594 RVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 594 ~V~Li--asGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+++++ ++||+.|+.|.+-.+-||.|.|-+|+..+.
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 45554 999999999999999999999988875544
No 419
>PRK10262 thioredoxin reductase; Provisional
Probab=76.42 E-value=12 Score=43.88 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=52.0
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCcccc-----------------ccccchhhccchHHHHHHHHHHhCCC--CCCc
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPLGNI-----------------IPKWNDLIYHNNWSEALNQLLQTNNF--PAGI 1300 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~i-----------------Lp~~d~lvf~~e~~~al~~~Le~~G~--~~gv 1300 (1429)
..++++|||||.-|+..+....+.|.++..+ +|.+...+...++.+.+.+.....+. ..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 4578999999999999999888777655111 01111111222344555555444332 111
Q ss_pred EEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1301 KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1301 ~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
++..|+. .++.+.... +. ..+.+|.||+|+|..|
T Consensus 84 ~v~~v~~---~~~~~~v~~-~~--~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 84 HINKVDL---QNRPFRLTG-DS--GEYTCDALIIATGASA 117 (321)
T ss_pred EEEEEEe---cCCeEEEEe-cC--CEEEECEEEECCCCCC
Confidence 1223322 234443322 22 2589999999999985
No 420
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=76.38 E-value=6.3 Score=45.29 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=45.0
Q ss_pred HHHHHhcCCcEEEEe--cCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH---H
Q psy12805 540 ASGVAKGKAEHIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA---L 614 (1429)
Q Consensus 540 A~~~akaGaD~I~Is--G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl---a 614 (1429)
+..+.+.|+..|++. +++|. .-|+... .+.++.+. .+++||++||+++-.|+.+.- .
T Consensus 155 ~~~~~~~g~~~ii~tdI~~dGt----------~~G~d~~-l~~~l~~~-------~~~pviasGGv~s~eDl~~l~~l~~ 216 (243)
T TIGR01919 155 ERLLDSGGCSRVVVTDSKKDGL----------SGGPNEL-LLEVVAAR-------TDAIVAASGGSSLLDDLRAIKYLDE 216 (243)
T ss_pred HHHHHhCCCCEEEEEecCCccc----------CCCcCHH-HHHHHHhh-------CCCCEEEECCcCCHHHHHHHHhhcc
Confidence 444556677766665 34443 3455543 23333322 268999999999999998764 3
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+|++.+-+|++.+
T Consensus 217 ~Gv~gvivg~Al~ 229 (243)
T TIGR01919 217 GGVSVAIGGKLLY 229 (243)
T ss_pred CCeeEEEEhHHHH
Confidence 5888887777654
No 421
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=76.19 E-value=16 Score=42.37 Aligned_cols=102 Identities=25% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
.+.++|.+++..-++.. --+.|- +--......+.++|+++|=|.+++=.| .-+. +..+.+
T Consensus 140 L~~~~l~el~~~A~~LG--m~~LVE----Vh~~eEl~rAl~~ga~iIGINnRdL~t----------f~vd----l~~t~~ 199 (254)
T COG0134 140 LDDEQLEELVDRAHELG--MEVLVE----VHNEEELERALKLGAKIIGINNRDLTT----------LEVD----LETTEK 199 (254)
T ss_pred cCHHHHHHHHHHHHHcC--CeeEEE----ECCHHHHHHHHhCCCCEEEEeCCCcch----------heec----HHHHHH
Confidence 35566777877777663 333333 223334455778999999999887443 1111 111222
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
|. .-++..+.+|.-+||.|..|+......||++|=+|++.|-
T Consensus 200 -la-~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 200 -LA-PLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMR 241 (254)
T ss_pred -HH-hhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhc
Confidence 21 2245568899999999999999999999999999997775
No 422
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=76.10 E-value=11 Score=42.75 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred ceEEEccccccccHHHHHHhCCCCc----cccccc-------------------------------------------c-
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPL----GNIIPK-------------------------------------------W- 1274 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V----~~iLp~-------------------------------------------~- 1274 (1429)
+++|||||..|+-++.++++.|.+| ..-.+. +
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 4899999999999999988877766 000000 0
Q ss_pred ch---hhccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEecccc
Q psy12805 1275 ND---LIYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1275 d~---lvf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~ 1339 (1429)
.. .+...++.+.+.+.+++.| +..+.+++.++.. ++.+... +.++..++++|.||.|.|..
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~---~~~~~~~-~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH---DDRVVVI-VRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe---CCEEEEE-EcCccEEEEeCEEEECCCcc
Confidence 00 0222356666776666666 4457777777543 2333322 23344579999999999976
No 423
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=76.08 E-value=5.8 Score=45.96 Aligned_cols=103 Identities=20% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHH
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 583 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~ 583 (1429)
+.+.+.|.+++...++. +--+.|-+- -......+.++|+++|-|.+++=.|. -+...... +..
T Consensus 141 ~L~~~~l~~l~~~a~~l--Gle~lVEVh----~~~El~~al~~~a~iiGINnRdL~tf----------~vd~~~~~-~l~ 203 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSL--GLEALVEVH----NEEELERALEAGADIIGINNRDLKTF----------EVDLNRTE-ELA 203 (254)
T ss_dssp GSGHHHHHHHHHHHHHT--T-EEEEEES----SHHHHHHHHHTT-SEEEEESBCTTTC----------CBHTHHHH-HHH
T ss_pred hCCHHHHHHHHHHHHHc--CCCeEEEEC----CHHHHHHHHHcCCCEEEEeCccccCc----------ccChHHHH-HHH
Confidence 45667778888887776 344444422 23334557789999999999985542 22222221 111
Q ss_pred HHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 584 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 584 q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.. +...+.+|+-+||.|..|+..+..+|+|+|-+|+++|-
T Consensus 204 ~~-----ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 204 PL-----IPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp CH-----SHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred hh-----CccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 22 23457899999999999999999999999999997775
No 424
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=75.82 E-value=7.5 Score=42.52 Aligned_cols=75 Identities=19% Similarity=0.055 Sum_probs=45.8
Q ss_pred HHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhh
Q psy12805 541 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 620 (1429)
Q Consensus 541 ~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdav 620 (1429)
..+.+.|+|+|.++-..- |+.-+. .....|+ ..+.++.+.. ..+++++.||| |..++..++.+||+.|
T Consensus 110 ~~a~~~g~dyi~~~~v~~-t~~k~~-~~~~~g~---~~l~~~~~~~------~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFP-TPTKKD-PAPPAGV---ELLREIAATS------IDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred HHHhHcCCCEEEECCccC-CCCCCC-CCCCCCH---HHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 447788999999865421 111000 0001121 2233332211 13789999999 5889999999999999
Q ss_pred hcchhHH
Q psy12805 621 GLSTAPL 627 (1429)
Q Consensus 621 g~gt~~L 627 (1429)
.++++.+
T Consensus 178 a~~~~i~ 184 (196)
T TIGR00693 178 AVVSAIM 184 (196)
T ss_pred EEhHHhh
Confidence 9888655
No 425
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=75.55 E-value=8.6 Score=43.39 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=51.6
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-.+|....+.|++.|.+.+-++.. . .-|... ..+.++.+. ..++++++||+++-.|+..++.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~-~-------~~~~n~-~~~~~i~~~-------~~~pv~~~ggi~~~~d~~~~~~ 94 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK-R-------GREPLF-ELISNLAEE-------CFMPLTVGGGIRSLEDAKKLLS 94 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc-c-------CCCCCH-HHHHHHHHh-------CCCCEEEECCCCCHHHHHHHHH
Confidence 45556777788899977777665431 0 012222 223333222 2578999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+.+-+|+..+
T Consensus 95 ~G~~~vilg~~~l 107 (232)
T TIGR03572 95 LGADKVSINTAAL 107 (232)
T ss_pred cCCCEEEEChhHh
Confidence 9999998887544
No 426
>PLN02334 ribulose-phosphate 3-epimerase
Probab=75.46 E-value=17 Score=41.21 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcC-CcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaG-aD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
....+..++.. +..+++-+.+..-.. .+....+.| +|+|.+-....|++ ...+ .| ..+..+.+ +.+
T Consensus 104 ~~~~~~~i~~~--g~~iGls~~~~t~~~-~~~~~~~~~~~Dyi~~~~v~pg~~------~~~~-~~--~~~~~i~~-~~~ 170 (229)
T PLN02334 104 LHRLIQQIKSA--GMKAGVVLNPGTPVE-AVEPVVEKGLVDMVLVMSVEPGFG------GQSF-IP--SMMDKVRA-LRK 170 (229)
T ss_pred HHHHHHHHHHC--CCeEEEEECCCCCHH-HHHHHHhccCCCEEEEEEEecCCC------cccc-CH--HHHHHHHH-HHH
Confidence 44566666654 455666654322222 233334443 99997754433221 1111 12 23333333 221
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhH
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 626 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~ 626 (1429)
++..++|.++||| |..++...+..||+.+-+|++.
T Consensus 171 --~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 171 --KYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred --hCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 1234689999999 6889999999999999888753
No 427
>PRK06175 L-aspartate oxidase; Provisional
Probab=74.48 E-value=4.6 Score=50.04 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHh
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLM 1405 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~ 1405 (1429)
|.|.||. ..+|++||+||||.|+. + ...+..++--||.|++++...+.
T Consensus 332 GGi~vd~-~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 332 GGIKVDL-NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred CCEEECC-CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 5577886 67899999999999963 2 13467788899999999987653
No 428
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=74.19 E-value=45 Score=38.63 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=86.2
Q ss_pred CCceEEEccccccccHHHHHHhCCCCc-----c-----------ccccc---------c-chh------------h-ccc
Q psy12805 1241 RKGLRIQAARCMECGVPFCQSSHGCPL-----G-----------NIIPK---------W-NDL------------I-YHN 1281 (1429)
Q Consensus 1241 pk~lvVIGaGcIgcE~a~c~s~~Gc~V-----~-----------~iLp~---------~-d~l------------v-f~~ 1281 (1429)
.-+++|||+|..|+-.+..+++.|.+| . .+.+. | +++ + ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 456999999999999998888777666 0 00111 0 000 0 111
Q ss_pred hHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCC-ceEEEEeC-------C---CeeEEEecEEEEeccccCchhhh-hh
Q psy12805 1282 NWSEALNQLLQTNN--FPAGIKTVKVEWTKDATG-RWKMDEVP-------N---SEKIFKCDLVLLAMGFLGPERYI-AN 1347 (1429)
Q Consensus 1282 e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G-~~~~v~~~-------g---se~~ieaDlVLlAiG~~pp~~~L-le 1347 (1429)
++.+.+.+...+.| +..++.+..+... +++ ++.-+... + +..+++++.||.|+|...+...+ .+
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHH
Confidence 33344444445555 3446666666442 221 22222211 1 24579999999999976555444 44
Q ss_pred ccCccccCC---C----------CEEecCCCCccCCCCEEEeCCCCC----CCCc---HHHHHHHHHHHHHHHHHHH
Q psy12805 1348 ELDLTLDPR---S----------NYSTVEKTYLTTVPRVYAAGDCRR----GQSL---VVWAISEGRQAAREIDSFL 1404 (1429)
Q Consensus 1348 ~lGLeld~~---G----------~I~VD~~~~~TSvPgVFAAGD~a~----g~~l---vv~Ai~qGr~AA~nI~~~L 1404 (1429)
..++..... | ...|+. + +-=.||+|++|=.+. .|.. .--=.-.|++||+.|...|
T Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~e~~~~~~-t-~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 179 KIVLEDQVPKLGGEKSMWAEVAEVAIHEN-T-REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred HcCcccCCcccCCchhhhhhhhHHHHHhc-c-CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 444433210 1 001111 1 113799999995432 2211 1122357999999998776
No 429
>KOG0571|consensus
Probab=73.93 E-value=8.1 Score=47.24 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=43.3
Q ss_pred CcceEEEEEcCCe--EEEecccCCCCCCcEEEEeCCEEEEEeeccccccCCCCc
Q psy12805 120 DGPALLTFTDGRY--IGAILDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANV 171 (1429)
Q Consensus 120 dgpa~~~~~dg~~--~ga~ldrnglrp~r~~~~~d~~~~~~se~g~~~~~~~~v 171 (1429)
||=.+++..|-+. +-+..|--|.+|.=|-...|+.+++|||.=.+.=+=+.|
T Consensus 118 DG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i 171 (543)
T KOG0571|consen 118 DGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKI 171 (543)
T ss_pred hhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhce
Confidence 5888999988877 999999999999977778899999999998875333333
No 430
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=73.91 E-value=4.1 Score=50.84 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCCEEecCCCCccCCCCEEEeCCCCCC-----C----CcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRG-----Q----SLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1356 ~G~I~VD~~~~~TSvPgVFAAGD~a~g-----~----~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
-|.|.||. ..+||+||+||+|.|+.. . .+.-.++--|+.||+.|...+...
T Consensus 341 mGGI~vD~-~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~~~~ 400 (518)
T COG0029 341 MGGIAVDA-NGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAPA 400 (518)
T ss_pred cccEEECC-CCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcccccC
Confidence 37799997 899999999999999751 2 234456666777888877665443
No 431
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=73.89 E-value=12 Score=46.93 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHH
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 584 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q 584 (1429)
.+.++|.++++..++. +--+.|- +--......+.++|+++|=|.+++=.|. -+... .+.+
T Consensus 143 L~~~~l~~l~~~a~~l--Gl~~lvE----vh~~~El~~al~~~a~iiGiNnRdL~t~----------~vd~~----~~~~ 202 (454)
T PRK09427 143 LDDEQYRQLAAVAHSL--NMGVLTE----VSNEEELERAIALGAKVIGINNRNLRDL----------SIDLN----RTRE 202 (454)
T ss_pred CCHHHHHHHHHHHHHc--CCcEEEE----ECCHHHHHHHHhCCCCEEEEeCCCCccc----------eECHH----HHHH
Confidence 4556788888887765 2333333 3333445668889999999999874431 12211 1111
Q ss_pred HHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 585 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 585 ~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.+ ..+...+.+|+-+||+|+.|+..+. -|||+|=+|++.|-
T Consensus 203 l~--~~ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~ 243 (454)
T PRK09427 203 LA--PLIPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMA 243 (454)
T ss_pred HH--hhCCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcC
Confidence 11 1234567888999999999998764 58999999997765
No 432
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.88 E-value=3.9 Score=52.48 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=39.7
Q ss_pred CccccCCCCEE-ecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYS-TVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~-VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+.+|.+|... +|.....|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 341 Gi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 407 (570)
T PRK05675 341 GVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKE 407 (570)
T ss_pred CcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666432 121123578999999999864 2 235678999999999999988753
No 433
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=73.77 E-value=4.6 Score=52.54 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=40.1
Q ss_pred CccccCCCCEE-ecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYS-TVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~-VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+.+|.+|... ++.....|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 402 Gi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~ 468 (635)
T PLN00128 402 GIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAKP 468 (635)
T ss_pred CcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 45556555432 222234589999999999963 2 236788999999999999888654
No 434
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=73.55 E-value=11 Score=45.21 Aligned_cols=115 Identities=16% Similarity=0.082 Sum_probs=66.4
Q ss_pred cchHHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccChH--HHHHHHHhcC--CcEEEE
Q psy12805 478 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG--VVASGVAKGK--AEHIVI 553 (1429)
Q Consensus 478 KV~~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg--~vA~~~akaG--aD~I~I 553 (1429)
+++..+|++-.-.-++..+ |. +++|++...+ |+.++.. +.+=+....... .....+.++| +|+|++
T Consensus 45 ~in~~LA~~a~~~G~~~i~-----hK-~~~E~~~sfv---rk~k~~~-L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~ 114 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIM-----HR-FDEESRIPFI---KDMQERG-LFASISVGVKACEYEFVTQLAEEALTPEYITI 114 (321)
T ss_pred hhhHHHHHHHHHcCCEEEE-----ec-CCHHHHHHHH---Hhccccc-cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 4455555544333233332 22 3788877754 4443321 233222222222 2345578888 799999
Q ss_pred ecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhh
Q psy12805 554 SGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 621 (1429)
Q Consensus 554 sG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg 621 (1429)
+-..|.+ ...+..+..+.+.+ ..+++..|.+-|..++..++..|||++=
T Consensus 115 D~ahg~s------------~~~~~~i~~i~~~~-------p~~~vi~GnV~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 115 DIAHGHS------------NSVINMIKHIKTHL-------PDSFVIAGNVGTPEAVRELENAGADATK 163 (321)
T ss_pred eCccCch------------HHHHHHHHHHHHhC-------CCCEEEEecCCCHHHHHHHHHcCcCEEE
Confidence 9887763 23333344333322 3566778989999999999999999864
No 435
>KOG1399|consensus
Probab=73.42 E-value=13 Score=46.52 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=79.5
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCc-------------------c----c-------cccc-------c-----chh
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPL-------------------G----N-------IIPK-------W-----NDL 1277 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V-------------------~----~-------iLp~-------~-----d~l 1277 (1429)
.+++++|||||..|+-.+-|+.+.|.++ . . -+|+ + ++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3688999999999999999998766655 0 0 0000 0 011
Q ss_pred hc--cchHHHHHHHHHHhCC----CCCCcEEEEEEEeecCCCceEEEEeCCC--eeEEEecEEEEeccccCchhhhhhcc
Q psy12805 1278 IY--HNNWSEALNQLLQTNN----FPAGIKTVKVEWTKDATGRWKMDEVPNS--EKIFKCDLVLLAMGFLGPERYIANEL 1349 (1429)
Q Consensus 1278 vf--~~e~~~al~~~Le~~G----~~~gv~v~~Ve~~k~~~G~~~~v~~~gs--e~~ieaDlVLlAiG~~pp~~~Lle~l 1349 (1429)
.| ..++-++++...+.-+ +.+++++.+|+... +|.|.....++. .++.-||.|++++|--. ...+....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~--~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~-~P~~P~~~ 161 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID--KGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV-EPRIPQIP 161 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc--CCceeEEEecCCcceeEEEeeEEEEcccCcC-CCCCCcCC
Confidence 11 1367777777777666 45577777776532 278887654443 35788999999999772 22333333
Q ss_pred CccccC-CCCEEecCCCCcc----CCCCEEEeCC
Q psy12805 1350 DLTLDP-RSNYSTVEKTYLT----TVPRVYAAGD 1378 (1429)
Q Consensus 1350 GLeld~-~G~I~VD~~~~~T----SvPgVFAAGD 1378 (1429)
|..++. .|.+.--- .++. ....|.++|-
T Consensus 162 g~~~~~f~G~~iHS~-~Yk~~e~f~~k~VlVIG~ 194 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSH-DYKSPEKFRDKVVLVVGC 194 (448)
T ss_pred CCchhhcCCcceehh-hccCcccccCceEEEECC
Confidence 432222 23333321 1221 2356777773
No 436
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=73.35 E-value=4.4 Score=52.27 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=39.5
Q ss_pred CccccCCCCEE-ecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYS-TVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~-VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+.+|.+|.+. +|.....|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 359 Gi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 425 (588)
T PRK08958 359 GIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAE 425 (588)
T ss_pred CeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566666432 221112388999999999864 2 135678999999999999988753
No 437
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=73.33 E-value=34 Score=39.03 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=45.5
Q ss_pred HHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhh
Q psy12805 543 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 621 (1429)
Q Consensus 543 ~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg 621 (1429)
++++|+++|-. .-|. +++.|..-...+.++++.+..++.. ..|+ ...+|+.+++..++.+||+.+=
T Consensus 120 Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~~~~~~~~~~~~--tkIL-aAS~r~~~~v~~~~~~G~d~vT 185 (220)
T PRK12655 120 AALAGAKYVAP--YVNR--------VDAQGGDGIRMVQELQTLLEMHAPE--SMVL-AASFKTPRQALDCLLAGCQSIT 185 (220)
T ss_pred HHHcCCeEEEe--ecch--------HhHcCCCHHHHHHHHHHHHHhcCCC--cEEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 56678876543 2222 4455666667778888888777664 3444 3569999999999999988763
No 438
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=72.67 E-value=4.9 Score=45.63 Aligned_cols=77 Identities=22% Similarity=0.145 Sum_probs=50.8
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
..-.+|....+.|++.|.|-+-++- ..|-+. ...+.++.+.. .++|+++||||+..|+.+.+
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa----------~~g~~~n~~~i~~i~~~~-------~~~i~vgGGIrs~ed~~~ll 92 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAA----------KEGRGSNLELIKEIAKET-------GIPIQVGGGIRSIEDAERLL 92 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHH----------CCTHHHHHHHHHHHHHHS-------SSEEEEESSE-SHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCc----------ccCchhHHHHHHHHHhcC-------CccEEEeCccCcHHHHHHHH
Confidence 4556777788889998777655432 011222 22233333321 48999999999999999999
Q ss_pred HhcchhhhcchhHHH
Q psy12805 614 LLGADEIGLSTAPLI 628 (1429)
Q Consensus 614 aLGAdavg~gt~~L~ 628 (1429)
.+||+-|-+||..+-
T Consensus 93 ~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 93 DAGADRVVIGTEALE 107 (229)
T ss_dssp HTT-SEEEESHHHHH
T ss_pred HhCCCEEEeChHHhh
Confidence 999999989996554
No 439
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=72.43 E-value=21 Score=41.35 Aligned_cols=102 Identities=18% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHH
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 583 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~ 583 (1429)
+.+.++|..++...++. +--+.|- +--......+.++|+++|=|.+++=.| +-+.. ..+.
T Consensus 134 ~L~~~~l~~l~~~a~~l--Gle~LVE----Vh~~~El~~a~~~ga~iiGINnRdL~t----------~~vd~----~~~~ 193 (247)
T PRK13957 134 ILTPSQIKSFLKHASSL--GMDVLVE----VHTEDEAKLALDCGAEIIGINTRDLDT----------FQIHQ----NLVE 193 (247)
T ss_pred hCCHHHHHHHHHHHHHc--CCceEEE----ECCHHHHHHHHhCCCCEEEEeCCCCcc----------ceECH----HHHH
Confidence 45677888888888776 3334443 223334456788999999999997543 22221 1112
Q ss_pred HHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 584 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 584 q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+.+ ..+...+.+|+-+||+|+.|+..+..+ ||+|-+|++.|-
T Consensus 194 ~L~--~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~ 235 (247)
T PRK13957 194 EVA--AFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFME 235 (247)
T ss_pred HHH--hhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhC
Confidence 211 123456778899999999999887766 999999997765
No 440
>PRK07395 L-aspartate oxidase; Provisional
Probab=72.35 E-value=3.7 Score=52.57 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCEEecCCCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHH
Q psy12805 1357 SNYSTVEKTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDS 1402 (1429)
Q Consensus 1357 G~I~VD~~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~ 1402 (1429)
|.|.||. ..+|++||+||||+|+. + ......++--|+.|+..+..
T Consensus 348 GGi~vd~-~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 348 GGVVTDL-NNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CCeeECC-CCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 5577886 67899999999999864 2 23456677778999888754
No 441
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.26 E-value=13 Score=42.45 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChH---HHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQ 584 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~---laL~ev~q 584 (1429)
+.+.++.+..++..|+.-|++=.+. -...+..+.++||++|+--+.+-. -....++.++|++ +...|+.+
T Consensus 55 ~~i~~l~~~~~~~~p~~~vGaGTVl---~~e~a~~a~~aGA~FiVsP~~~~~----v~~~~~~~~i~~iPG~~TpsEi~~ 127 (222)
T PRK07114 55 EVFAELVKYAAKELPGMILGVGSIV---DAATAALYIQLGANFIVTPLFNPD----IAKVCNRRKVPYSPGCGSLSEIGY 127 (222)
T ss_pred HHHHHHHHHHHhhCCCeEEeeEeCc---CHHHHHHHHHcCCCEEECCCCCHH----HHHHHHHcCCCEeCCCCCHHHHHH
Confidence 3344444455555565555555332 223467789999999983332211 0111122232221 22222222
Q ss_pred HH---------------------HhcCCCCceEEEEcCCccc-HHHHHHHHHhcchhhhcchh
Q psy12805 585 VL---------------------ALNNLRSRVVLQADGQIRT-GFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 585 ~L---------------------~~~gLR~~V~LiasGGIrt-g~Dv~kAlaLGAdavg~gt~ 625 (1429)
++ ...+.=..++++.+|||.. ..++...+..||.+||+|+.
T Consensus 128 A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~ 190 (222)
T PRK07114 128 AEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSK 190 (222)
T ss_pred HHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChh
Confidence 22 0011113578999999985 48888899999999999983
No 442
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=71.96 E-value=12 Score=42.10 Aligned_cols=77 Identities=23% Similarity=0.176 Sum_probs=51.0
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-.+|....+.|++.|.|-+-++-- ...+.. ..-+.++.+.. .+++++.|||++..|+.+++.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~--------~g~~~~-~~~i~~i~~~~-------~~pi~~ggGI~~~ed~~~~~~ 92 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAK--------EGGPVN-LPVIKKIVRET-------GVPVQVGGGIRSLEDVEKLLD 92 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc--------cCCCCc-HHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHH
Confidence 35557777888899988776555431 011111 22233333321 478999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+.+-+++.++
T Consensus 93 ~Ga~~vvlgs~~l 105 (230)
T TIGR00007 93 LGVDRVIIGTAAV 105 (230)
T ss_pred cCCCEEEEChHHh
Confidence 9999886666443
No 443
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.94 E-value=11 Score=43.42 Aligned_cols=75 Identities=12% Similarity=-0.049 Sum_probs=52.2
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 613 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~-~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAl 613 (1429)
....+|....+.|+|.+.|-+-+|.. -|-+. ...+.++.+.. .+|++.|||||-.|+-+.+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~----------~g~~~n~~~i~~i~~~~--------~~v~vGGGIrs~e~~~~~l 92 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAI----------ENSVENLPVLEKLSEFA--------EHIQIGGGIRSLDYAEKLR 92 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcc----------cCCcchHHHHHHHHhhc--------CcEEEecCCCCHHHHHHHH
Confidence 45557787888999988887776531 11221 22233333221 4799999999999999999
Q ss_pred HhcchhhhcchhHH
Q psy12805 614 LLGADEIGLSTAPL 627 (1429)
Q Consensus 614 aLGAdavg~gt~~L 627 (1429)
.+||+-|-+||.++
T Consensus 93 ~~Ga~rvvigT~a~ 106 (241)
T PRK14114 93 KLGYRRQIVSSKVL 106 (241)
T ss_pred HCCCCEEEECchhh
Confidence 99999988888443
No 444
>PRK06847 hypothetical protein; Provisional
Probab=71.94 E-value=13 Score=44.38 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.5
Q ss_pred CCceEEEccccccccHHHHHHhCCCCc
Q psy12805 1241 RKGLRIQAARCMECGVPFCQSSHGCPL 1267 (1429)
Q Consensus 1241 pk~lvVIGaGcIgcE~a~c~s~~Gc~V 1267 (1429)
+.+++|||||..|+-+|.++++.|++|
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v 30 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAV 30 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCE
Confidence 567999999999999999998877666
No 445
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=71.90 E-value=25 Score=39.86 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHHHhCCCCeEEEEeccccChHH-HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcC
Q psy12805 512 ELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 590 (1429)
Q Consensus 512 qlI~~Lk~~~~~~pV~VKLv~e~Gvg~-vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~g 590 (1429)
+.|+.||+..|+++|..-+- ..+.|. .++.+.++|||+++|+|.- . .+|+ ..+.+.-.+.|
T Consensus 45 ~aV~~lr~~~pd~~IvAD~K-t~D~G~~e~~ma~~aGAd~~tV~g~A-~-------------~~TI---~~~i~~A~~~~ 106 (217)
T COG0269 45 RAVRALRELFPDKIIVADLK-TADAGAIEARMAFEAGADWVTVLGAA-D-------------DATI---KKAIKVAKEYG 106 (217)
T ss_pred HHHHHHHHHCCCCeEEeeee-ecchhHHHHHHHHHcCCCEEEEEecC-C-------------HHHH---HHHHHHHHHcC
Confidence 57889999999988865332 335554 6788999999999999873 1 3443 33344445566
Q ss_pred CCCceEEEEcCCcccHHHHHHHHH-hcchhhhc
Q psy12805 591 LRSRVVLQADGQIRTGFDVVVAAL-LGADEIGL 622 (1429)
Q Consensus 591 LR~~V~LiasGGIrtg~Dv~kAla-LGAdavg~ 622 (1429)
....+.++ |..++.+.++=+- +|.+-+.+
T Consensus 107 ~~v~iDl~---~~~~~~~~~~~l~~~gvd~~~~ 136 (217)
T COG0269 107 KEVQIDLI---GVWDPEQRAKWLKELGVDQVIL 136 (217)
T ss_pred CeEEEEee---cCCCHHHHHHHHHHhCCCEEEE
Confidence 66566666 5889999988888 99886643
No 446
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=71.61 E-value=27 Score=36.67 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=53.2
Q ss_pred ccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCccc-HH----
Q psy12805 533 EVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRT-GF---- 607 (1429)
Q Consensus 533 e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrt-g~---- 607 (1429)
.+-...++..+.+.++|+|-+|..-+.+ .....++.+.|.+.|+|+ +.+++-|.+-. +.
T Consensus 36 ~v~~e~~v~aa~~~~adiVglS~L~t~~---------------~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d~~~ 99 (128)
T cd02072 36 LSPQEEFIDAAIETDADAILVSSLYGHG---------------EIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQDFED 99 (128)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccCC---------------HHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhhhHH
Confidence 3445667788888999999999986543 344677888999999986 88888777643 23
Q ss_pred HHHHHHHhcchhh
Q psy12805 608 DVVVAALLGADEI 620 (1429)
Q Consensus 608 Dv~kAlaLGAdav 620 (1429)
|..++..+|-+++
T Consensus 100 ~~~~L~~~Gv~~v 112 (128)
T cd02072 100 VEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHcCCCEE
Confidence 3456788897755
No 447
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=71.57 E-value=11 Score=43.25 Aligned_cols=65 Identities=28% Similarity=0.237 Sum_probs=42.2
Q ss_pred cCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 546 GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 546 aGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
.|-.+|-|....|.-+ .+| . .+.++.+.+ .+++||..|||||...+.+++..|||.+-+|+.
T Consensus 152 ~g~~~iYLEaGSGa~~----------~v~-~-~v~~~~~~~------~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAYG----------PVP-E-EVIAAVKKL------SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp TT-SEEEEE--TTSSS-----------HH-H-HHHHHHHHS------SSSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred hCCCEEEEEeCCCCCC----------Ccc-H-HHHHHHHhc------CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 4889999976433311 122 2 222333333 368999999999999999999999999999996
Q ss_pred HHH
Q psy12805 626 PLI 628 (1429)
Q Consensus 626 ~L~ 628 (1429)
+.-
T Consensus 214 iee 216 (230)
T PF01884_consen 214 IEE 216 (230)
T ss_dssp HHH
T ss_pred EEE
Confidence 654
No 448
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=71.28 E-value=10 Score=44.22 Aligned_cols=73 Identities=8% Similarity=-0.034 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-..|....+.|++.|.|-+-+|+. . .. ...+.++.+ + .++|.+.||||+ .|+-..+.
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~--~---------~n-~~~i~~i~~-~-------~~~vqvGGGIR~-e~i~~~l~ 102 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADD--A---------SL-AAALEALRA-Y-------PGGLQVGGGVNS-ENAMSYLD 102 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCC--c---------cc-HHHHHHHHh-C-------CCCEEEeCCccH-HHHHHHHH
Confidence 45567888889999988887776532 0 11 222333322 1 378999999997 99999999
Q ss_pred hcchhhhcchhHHH
Q psy12805 615 LGADEIGLSTAPLI 628 (1429)
Q Consensus 615 LGAdavg~gt~~L~ 628 (1429)
+||+-|-+||.++-
T Consensus 103 ~Ga~rViigT~Av~ 116 (262)
T PLN02446 103 AGASHVIVTSYVFR 116 (262)
T ss_pred cCCCEEEEchHHHh
Confidence 99999999996553
No 449
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=71.27 E-value=39 Score=37.16 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
++..+.+..+|... ..+.+=+.+..-... ......++|.|.+.... |+||. .+.......+.++.+.+
T Consensus 91 ~~~~~~~~~~~~~g--~~~~~~~~~~t~~e~--~~~~~~~~d~i~~~~~~~g~tg~-------~~~~~~~~~i~~i~~~~ 159 (210)
T TIGR01163 91 EHIHRLLQLIKDLG--AKAGIVLNPATPLEF--LEYVLPDVDLVLLMSVNPGFGGQ-------KFIPDTLEKIREVRKMI 159 (210)
T ss_pred hhHHHHHHHHHHcC--CcEEEEECCCCCHHH--HHHHHhhCCEEEEEEEcCCCCcc-------cccHHHHHHHHHHHHHH
Confidence 34456667776653 333333333322222 22234578988776543 44431 11111223344444333
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
. +++..+++.++|||+ ..++..++..|||.+-+|++.+
T Consensus 160 ~--~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 160 D--ENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred H--hcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 2 122347899999996 6889898999999998888554
No 450
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=71.21 E-value=11 Score=42.91 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=47.1
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
-|..+...|..+|.++ ..|. . .+. .-+..+.+.+ ..++|++.|||||..++-.++.+|||
T Consensus 140 yA~aae~~g~~ivyLe-~SG~----------~--~~~-e~I~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 140 YALAAEYLGMPIVYLE-YSGA----------Y--GPP-EVVRAVKKVL------GDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred HHHHHHHcCCeEEEeC-CCCC----------c--CCH-HHHHHHHHhc------CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3455666788888888 2222 1 222 2233333321 14789999999999999999999999
Q ss_pred hhhcchhHH
Q psy12805 619 EIGLSTAPL 627 (1429)
Q Consensus 619 avg~gt~~L 627 (1429)
.|-+|+.++
T Consensus 200 ~VVVGsai~ 208 (219)
T cd02812 200 TIVVGNIVE 208 (219)
T ss_pred EEEECchhh
Confidence 999998544
No 451
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=71.07 E-value=6 Score=51.34 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.8
Q ss_pred CccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1366 YLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1366 ~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
..|++||+||||+|+. + ...+..|+-.|+.|++++..++..
T Consensus 398 ~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~~ 447 (617)
T PTZ00139 398 DDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEILKP 447 (617)
T ss_pred CCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3568999999999863 2 246778999999999999988653
No 452
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=71.01 E-value=11 Score=42.85 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=29.6
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.|.-++.||+.|+.|.+-.+-||||.|-+|+..+.
T Consensus 208 PVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 208 PVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 45555999999999999999999999988885544
No 453
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.73 E-value=5.5 Score=51.39 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.1
Q ss_pred CccccCCCCEEecC-CCCccCCCCEEEeCCCCC-C--------CCcHHHHHHHHHHHHHHHHHHHhC
Q psy12805 1350 DLTLDPRSNYSTVE-KTYLTTVPRVYAAGDCRR-G--------QSLVVWAISEGRQAAREIDSFLMG 1406 (1429)
Q Consensus 1350 GLeld~~G~I~VD~-~~~~TSvPgVFAAGD~a~-g--------~~lvv~Ai~qGr~AA~nI~~~L~g 1406 (1429)
|+.+|.+|... |. ....|++||+||||+|+. + ...+..|+-.|+.|++++..+...
T Consensus 363 Gi~vd~~g~~~-~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~~~ 428 (591)
T PRK07057 363 GIPTNIHGQVV-GTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKK 428 (591)
T ss_pred CeeECCCCcEe-ccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555331 21 012457999999999864 2 145788999999999999888643
No 454
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=70.68 E-value=16 Score=41.73 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccC-CChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAG-LPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~G-iP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
.|+.-.+.|||=+++=+-... +-| -++...+.++.+.+ .+|+-+.|||++-.|+-+.+.+||
T Consensus 35 lA~~Y~e~GADElvFlDItAs----------~~gr~~~~~vv~r~A~~v-------fiPltVGGGI~s~eD~~~ll~aGA 97 (256)
T COG0107 35 LAKRYNEEGADELVFLDITAS----------SEGRETMLDVVERVAEQV-------FIPLTVGGGIRSVEDARKLLRAGA 97 (256)
T ss_pred HHHHHHHcCCCeEEEEecccc----------cccchhHHHHHHHHHhhc-------eeeeEecCCcCCHHHHHHHHHcCC
Confidence 666677889996654333211 111 35555566666554 699999999999999999999999
Q ss_pred hhhhcchhHHH
Q psy12805 618 DEIGLSTAPLI 628 (1429)
Q Consensus 618 davg~gt~~L~ 628 (1429)
|=|.+.|+++.
T Consensus 98 DKVSINsaAv~ 108 (256)
T COG0107 98 DKVSINSAAVK 108 (256)
T ss_pred CeeeeChhHhc
Confidence 99999987654
No 455
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=70.43 E-value=10 Score=46.27 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=51.7
Q ss_pred CCceEEEccccccccHHHHHHhCCCCc-------cccccccch-h---hccchHHH----HHHHHHHhCC--CCCCcEEE
Q psy12805 1241 RKGLRIQAARCMECGVPFCQSSHGCPL-------GNIIPKWND-L---IYHNNWSE----ALNQLLQTNN--FPAGIKTV 1303 (1429)
Q Consensus 1241 pk~lvVIGaGcIgcE~a~c~s~~Gc~V-------~~iLp~~d~-l---vf~~e~~~----al~~~Le~~G--~~~gv~v~ 1303 (1429)
+++++|||||.-|+.++..+++.|.+. ....|+.-. + ...+...+ .-.+.+.+++ +..+..+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 468999999999999999988776533 111111100 0 00010000 0122344555 34466666
Q ss_pred EEEEeecCCCceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1304 KVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1304 ~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
.+.. +.+ .+...++ +++.+|.||+|+|.+|
T Consensus 83 ~id~----~~~--~v~~~~g-~~~~yd~LViATGs~~ 112 (396)
T PRK09754 83 TLGR----DTR--ELVLTNG-ESWHWDQLFIATGAAA 112 (396)
T ss_pred EEEC----CCC--EEEECCC-CEEEcCEEEEccCCCC
Confidence 6643 222 1223332 4699999999999885
No 456
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=70.43 E-value=33 Score=40.86 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=49.1
Q ss_pred ceEEEccccccccHHHHHHhCCCC-c--------c------cccc---ccchhhccchHHHHHHHHHHhCCCCCCcEEE-
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCP-L--------G------NIIP---KWNDLIYHNNWSEALNQLLQTNNFPAGIKTV- 1303 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~-V--------~------~iLp---~~d~lvf~~e~~~al~~~Le~~G~~~gv~v~- 1303 (1429)
+++|||||..|+-.+.-.++.+.. + . ..+. .+..-+.+.++.+...+..+.-+ +++.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~----~~~~~ 80 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG----VEIVE 80 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC----eEEEE
Confidence 589999999999999988877754 2 1 0111 12211233344444444443333 3322
Q ss_pred -EEEEeecCCC-ceEEEEeCCCeeEEEecEEEEeccccC
Q psy12805 1304 -KVEWTKDATG-RWKMDEVPNSEKIFKCDLVLLAMGFLG 1340 (1429)
Q Consensus 1304 -~Ve~~k~~~G-~~~~v~~~gse~~ieaDlVLlAiG~~p 1340 (1429)
.+...+ ..+ .+.. . .++. +++|+.||+|+|..+
T Consensus 81 ~~v~~v~-~~~~~F~v-~-t~~~-~~~ak~vIiAtG~~~ 115 (305)
T COG0492 81 DEVEKVE-LEGGPFKV-K-TDKG-TYEAKAVIIATGAGA 115 (305)
T ss_pred EEEEEEe-ecCceEEE-E-ECCC-eEEEeEEEECcCCcc
Confidence 232222 222 3222 2 2333 399999999999874
No 457
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.50 E-value=3 Score=47.41 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=31.2
Q ss_pred ceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 594 ~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
+++||++||+++..|+.++..+|++++-+|++++.
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 58999999999999999999999999988886554
No 458
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=69.12 E-value=21 Score=40.20 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
++..+.|+.+++..|+..|++-.+. -...+..+.++||++|+--+. ..++.++..
T Consensus 44 ~~a~~~i~~l~~~~~~~~vGAGTVl---~~~~a~~a~~aGA~FivsP~~----------------------~~~v~~~~~ 98 (204)
T TIGR01182 44 PVALDAIRLLRKEVPDALIGAGTVL---NPEQLRQAVDAGAQFIVSPGL----------------------TPELAKHAQ 98 (204)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHH
Confidence 3456678888888777666666332 233567789999999962121 113444444
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhh
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 620 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdav 620 (1429)
+++ ++.+- |+.|+.++..|+.+||+.+
T Consensus 99 ~~~----i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 99 DHG----IPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred HcC----CcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 444 45554 8999999999999999876
No 459
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=68.31 E-value=52 Score=37.90 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccC----hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCC
Q psy12805 498 PPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVG----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL 573 (1429)
Q Consensus 498 P~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G----vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~Gi 573 (1429)
.-|+....+.+++...+..+.... ..||++-+..-.| +...+..+.++|++.|.|.+.......... ....-+
T Consensus 45 G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~--~~~~~~ 121 (243)
T cd00377 45 GLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHH--GGKVLV 121 (243)
T ss_pred CCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCC--CCCeec
Confidence 344555678899999999998876 7899988654222 222345577899999999655322110000 112335
Q ss_pred ChHHHHHHHHHHHHh-cCCCCceEEEEc--------CCcccHHHHHHH-HHhcchhhh
Q psy12805 574 PWELGVAETHQVLAL-NNLRSRVVLQAD--------GQIRTGFDVVVA-ALLGADEIG 621 (1429)
Q Consensus 574 P~~laL~ev~q~L~~-~gLR~~V~Lias--------GGIrtg~Dv~kA-laLGAdavg 621 (1429)
|.+..+..+...... .++ .++.|++= .++.....-+++ ...|||.+-
T Consensus 122 ~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 122 PIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred CHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 777666655544432 222 46778763 234333333444 778888773
No 460
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=68.06 E-value=20 Score=43.25 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhc-CCcEEEEecCCCCCCccccccccccCCChHHHHHHH
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG-KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 582 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~aka-GaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev 582 (1429)
+.+.++|..+++..++. +--+.|- +--......+.++ |+++|=|.+++=.| +-+. +..+
T Consensus 213 iL~~~~L~~l~~~A~~L--Gme~LVE----VH~~~ElerAl~~~ga~iIGINNRdL~T----------f~vD----l~~t 272 (338)
T PLN02460 213 VLPDLDIKYMLKICKSL--GMAALIE----VHDEREMDRVLGIEGVELIGINNRSLET----------FEVD----ISNT 272 (338)
T ss_pred hCCHHHHHHHHHHHHHc--CCeEEEE----eCCHHHHHHHHhcCCCCEEEEeCCCCCc----------ceEC----HHHH
Confidence 34556788888887765 3333333 3233344557777 99999999998543 2122 1122
Q ss_pred HHHHHhc---CCC-CceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 583 HQVLALN---NLR-SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 583 ~q~L~~~---gLR-~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
.+.+... -++ ..+.+++-+||+|+.|+.....+|||+|=+|.++|-
T Consensus 273 ~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 273 KKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred HHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 2222100 122 356788889999999999999999999999997665
No 461
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.69 E-value=15 Score=41.93 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
..-..|+...+.|+|-+.|-+-++-.+.. +-...+.++.+. ...++++.|||||-.|+-+++.
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~----------~n~~~i~~i~~~-------~~~~v~vGGGIrs~e~~~~~l~ 93 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVG----------NNEMYIKEISKI-------GFDWIQVGGGIRDIEKAKRLLS 93 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCc----------chHHHHHHHHhh-------CCCCEEEeCCcCCHHHHHHHHH
Confidence 34557777888899988887776432111 112223333221 1237999999999999999999
Q ss_pred hcchhhhcchhHH
Q psy12805 615 LGADEIGLSTAPL 627 (1429)
Q Consensus 615 LGAdavg~gt~~L 627 (1429)
+||+-+-+||.++
T Consensus 94 ~Ga~kvvigt~a~ 106 (232)
T PRK13586 94 LDVNALVFSTIVF 106 (232)
T ss_pred CCCCEEEECchhh
Confidence 9999998888543
No 462
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=67.62 E-value=18 Score=40.85 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchh
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 619 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAda 619 (1429)
|..+...|++.|.|...+|-. -..+ ..-+.++.+.+ ++++++.|||||..++..++..|||.
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~----------~~v~-~e~i~~Vk~~~-------~~Pv~vGGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGAS----------YPVN-PETISLVKKAS-------GIPLIVGGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCC----------CCCC-HHHHHHHHHhh-------CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 444567899999997654431 0112 22344444443 57999999999999999988899997
Q ss_pred hhc
Q psy12805 620 IGL 622 (1429)
Q Consensus 620 vg~ 622 (1429)
+-+
T Consensus 202 VVV 204 (205)
T TIGR01769 202 IVT 204 (205)
T ss_pred EEe
Confidence 644
No 463
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.61 E-value=13 Score=46.59 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..+.++|+|+|.|+-..|.+ .-+...+.++.+.+ .+++|++ |.+-|..++..++.+||
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS------------IYVIDSIKEIKKTY------PDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH------------hHHHHHHHHHHHhC------CCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 46677899999999999887642 11233333333321 2467777 99999999999999999
Q ss_pred hhhhcc
Q psy12805 618 DEIGLS 623 (1429)
Q Consensus 618 davg~g 623 (1429)
|++.+|
T Consensus 288 d~i~vg 293 (450)
T TIGR01302 288 DGLRVG 293 (450)
T ss_pred CEEEEC
Confidence 998654
No 464
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=67.56 E-value=6.5 Score=48.82 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=38.9
Q ss_pred CccccCCCCEEecCCCCccCCCCEEEeCCCCCC---------CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1350 DLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG---------QSLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1350 GLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g---------~~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
|+.+|.++.+.-.+ -+.+||+||||.|+.+ -..+..|+-.||.|++++..+.+.+
T Consensus 401 Gl~~d~~~~vl~~~---g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~~ 464 (466)
T PRK08274 401 GLKVDEDARVRFAD---GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQHE 464 (466)
T ss_pred cEEECCCceEECCC---CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhhc
Confidence 55566655433221 2479999999998654 2456788999999999999886543
No 465
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.52 E-value=27 Score=39.39 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEeccccChHH-HHHHHHhcCCcEEEEe--cCCCCCCcc
Q psy12805 504 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTGAS 563 (1429)
Q Consensus 504 i~siedL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~-vA~~~akaGaD~I~Is--G~~GGTgaa 563 (1429)
..+|+++.+++..+|+..|+.||.+-.=-..|.+. -+..+.++|+|.|..+ |.++++|.+
T Consensus 162 ~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~ 224 (237)
T PF00682_consen 162 IMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNA 224 (237)
T ss_dssp -S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-
T ss_pred CcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCc
Confidence 34678999999999999988999998766667765 3455789999999776 555444443
No 466
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=67.14 E-value=46 Score=38.17 Aligned_cols=106 Identities=20% Similarity=0.168 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecCC-CCCCccccccccccCCChHHHHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLA 587 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~-GGTgaap~~~~~~~GiP~~laL~ev~q~L~ 587 (1429)
++...|+.+|+. +...+|-|.+..-+..+..-+. -+|.|.|=..+ |..|.. +=..++.=+.++++.+.
T Consensus 96 ~~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~-------fi~~~l~KI~~lr~~~~ 164 (229)
T PRK09722 96 QAFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQP-------FIPEMLDKIAELKALRE 164 (229)
T ss_pred hHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchh-------ccHHHHHHHHHHHHHHH
Confidence 456677888877 5678888888777766554333 36877653222 221111 11122334555555555
Q ss_pred hcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHH
Q psy12805 588 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628 (1429)
Q Consensus 588 ~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~ 628 (1429)
++++ .+.|.+||||. ..-+..+...|||.+=+|++.++
T Consensus 165 ~~~~--~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF 202 (229)
T PRK09722 165 RNGL--EYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLF 202 (229)
T ss_pred hcCC--CeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHc
Confidence 5554 57899999999 44577888999999978875554
No 467
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=67.02 E-value=10 Score=46.57 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=50.7
Q ss_pred ceEEEccccccccHHHHHHhCCC--Cc-----cc-------cccccchhhcc--chHHHHHHHHHHhCCC--CCCcEEEE
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGC--PL-----GN-------IIPKWNDLIYH--NNWSEALNQLLQTNNF--PAGIKTVK 1304 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc--~V-----~~-------iLp~~d~lvf~--~e~~~al~~~Le~~G~--~~gv~v~~ 1304 (1429)
+++|||||..|+.++.-+.+.+. +| .. .+|.+..-.+. .++.....+.+++.++ ..+.++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 69999999999998887776653 44 11 12221110000 1112222344556663 34566666
Q ss_pred EEEeecCCCceEEEEeCCCeeEEE--ecEEEEeccccCc
Q psy12805 1305 VEWTKDATGRWKMDEVPNSEKIFK--CDLVLLAMGFLGP 1341 (1429)
Q Consensus 1305 Ve~~k~~~G~~~~v~~~gse~~ie--aDlVLlAiG~~pp 1341 (1429)
|... +..+.. ...++..+++ +|.+|+|+|.+|.
T Consensus 82 id~~---~~~v~~-~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 82 VDAK---NKTITV-KNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred EECC---CCEEEE-EECCCCCEEEecCCEEEECCCCCCC
Confidence 6431 222222 2112223455 9999999999853
No 468
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=66.90 E-value=24 Score=43.41 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEecc--ccCc------hhhhhhccCc
Q psy12805 1282 NWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG--FLGP------ERYIANELDL 1351 (1429)
Q Consensus 1282 e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG--~~pp------~~~Lle~lGL 1351 (1429)
++-+++...+++.| +.++.++..|+.. +.... +...+ .+++.||.+|+|+| .-|- --.++++.|+
T Consensus 112 ~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~---~~~f~-l~t~~-g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~ 186 (408)
T COG2081 112 PIVDALLKELEALGVTIRTRSRVSSVEKD---DSGFR-LDTSS-GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGH 186 (408)
T ss_pred HHHHHHHHHHHHcCcEEEecceEEeEEec---CceEE-EEcCC-CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence 45566666666666 4557777777542 21222 23333 33799999999999 3321 1346788887
Q ss_pred ccc
Q psy12805 1352 TLD 1354 (1429)
Q Consensus 1352 eld 1354 (1429)
++.
T Consensus 187 ~I~ 189 (408)
T COG2081 187 TIT 189 (408)
T ss_pred ccc
Confidence 664
No 469
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=66.88 E-value=84 Score=36.78 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 577 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 577 laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
..+.+..+.+++. .+++|.+-=||+|+.|+.+.. .|||.|=+|++++-.+
T Consensus 184 ~~l~~~i~~ik~~---~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i 233 (259)
T PF00290_consen 184 DELKEFIKRIKKH---TDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKII 233 (259)
T ss_dssp HHHHHHHHHHHHT---TSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHH
T ss_pred HHHHHHHHHHHhh---cCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHH
Confidence 3444544555444 378999999999999998777 9999999999776654
No 470
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=66.69 E-value=6.7 Score=48.12 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCccC-CCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy12805 1365 TYLTT-VPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTS 1408 (1429)
Q Consensus 1365 ~~~TS-vPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~ 1408 (1429)
.++|. +|++|+||+.++. .=-..|+++|-.|+.|+.+++++++
T Consensus 349 ~l~~k~~~~lf~AGqi~G~-~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 349 TLETKKIPGLFFAGQINGT-EGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp TSBBSSSBTEEE-GGGGTB--SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred ceEECCCCCceECCCCcch-hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45664 9999999999765 4578899999999999999998863
No 471
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=66.13 E-value=55 Score=38.38 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhc--C-CcEEEEecCCCCCCccccccccc--c---C--CChHHHH
Q psy12805 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG--K-AEHIVISGHDGGTGASSWTGIKN--A---G--LPWELGV 579 (1429)
Q Consensus 510 L~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~aka--G-aD~I~IsG~~GGTgaap~~~~~~--~---G--iP~~laL 579 (1429)
.+..|..||.. ++..++-..+ .+..+- . =|+++++++---||..|.+..+. + . -|.--.|
T Consensus 72 ~~a~i~aLk~L--Gvk~iI~tna--------vGsl~~~~~pGDlVv~~D~I~~tg~~p~t~~~g~~~~~~~~~~~y~~~L 141 (267)
T PRK08564 72 YRANIWALKEL--GVEWVIAVSA--------VGSLREDYKPGDFVIPDQFIDMTKKREYTFYDGPVVAHVSMADPFCPEL 141 (267)
T ss_pred chHHHHHHHHC--CCcEEEEecc--------ccccCCCCCCCCEEeehhhhccCCCCCcccCCCCccccCCCCcccCHHH
Confidence 35678888876 4555554332 121111 1 15666666544455444443221 1 1 1211122
Q ss_pred -HHHHHHHHhcCCCCc--eEEEEcCC--cccHHHHHHHHHh-cchhhhcchhHHHHh
Q psy12805 580 -AETHQVLALNNLRSR--VVLQADGQ--IRTGFDVVVAALL-GADEIGLSTAPLITM 630 (1429)
Q Consensus 580 -~ev~q~L~~~gLR~~--V~LiasGG--Irtg~Dv~kAlaL-GAdavg~gt~~L~al 630 (1429)
..+++...+.+++-. -..+...| ..|..++-..-.+ |||.|||++.|=..+
T Consensus 142 r~~l~~aA~~~g~~~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvil 198 (267)
T PRK08564 142 RKIIIETAKELGIRTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNL 198 (267)
T ss_pred HHHHHHHHHHcCCceecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHHH
Confidence 334455555555422 23445555 7888999888776 999999999775543
No 472
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=65.23 E-value=19 Score=44.49 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCEEEeCCCCCCC-------CcHHHHHHHHHHHHHHHHHHHhCC
Q psy12805 1371 PRVYAAGDCRRGQ-------SLVVWAISEGRQAAREIDSFLMGT 1407 (1429)
Q Consensus 1371 PgVFAAGD~a~g~-------~lvv~Ai~qGr~AA~nI~~~L~g~ 1407 (1429)
++++++||.+... .=+..|+..|+.||+.|...+...
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999987632 235679999999999998888643
No 473
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.82 E-value=26 Score=39.67 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..+.++|+|+|.+. ... ..|+..+-++ ...+ ..++++++|||. ..++...+..||
T Consensus 120 ~E~~~A~~~Gad~vklF--Pa~----------~~G~~~ik~l---~~~~------p~ip~~atGGI~-~~N~~~~l~aGa 177 (213)
T PRK06552 120 TEIVTALEAGSEIVKLF--PGS----------TLGPSFIKAI---KGPL------PQVNVMVTGGVN-LDNVKDWFAAGA 177 (213)
T ss_pred HHHHHHHHcCCCEEEEC--Ccc----------cCCHHHHHHH---hhhC------CCCEEEEECCCC-HHHHHHHHHCCC
Confidence 45566788999999982 211 2443333222 2221 258999999998 788999999999
Q ss_pred hhhhcchhHH
Q psy12805 618 DEIGLSTAPL 627 (1429)
Q Consensus 618 davg~gt~~L 627 (1429)
+.+++|+..+
T Consensus 178 ~~vavgs~l~ 187 (213)
T PRK06552 178 DAVGIGGELN 187 (213)
T ss_pred cEEEEchHHh
Confidence 9999998553
No 474
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.51 E-value=9.3 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
.+..+.+.|+|+|-+ +... .-.|+.+ +..+...+ ..+++++.||| |..++...+..||+
T Consensus 117 e~~~A~~~Gadyv~~--Fpt~---------~~~G~~~---l~~~~~~~------~~ipvvaiGGI-~~~n~~~~l~aGa~ 175 (187)
T PRK07455 117 EIVTAWQAGASCVKV--FPVQ---------AVGGADY---IKSLQGPL------GHIPLIPTGGV-TLENAQAFIQAGAI 175 (187)
T ss_pred HHHHHHHCCCCEEEE--CcCC---------cccCHHH---HHHHHhhC------CCCcEEEeCCC-CHHHHHHHHHCCCe
Confidence 455677899999998 4311 0123333 33322222 24899999999 57999999999999
Q ss_pred hhhcchhH
Q psy12805 619 EIGLSTAP 626 (1429)
Q Consensus 619 avg~gt~~ 626 (1429)
.|++++..
T Consensus 176 ~vav~s~i 183 (187)
T PRK07455 176 AVGLSGQL 183 (187)
T ss_pred EEEEehhc
Confidence 99988743
No 475
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=64.51 E-value=96 Score=35.95 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCC--ceEEEEcCC--cccHHHHHHHHHhcchhhhcchhHHHHh
Q psy12805 582 THQVLALNNLRS--RVVLQADGQ--IRTGFDVVVAALLGADEIGLSTAPLITM 630 (1429)
Q Consensus 582 v~q~L~~~gLR~--~V~LiasGG--Irtg~Dv~kAlaLGAdavg~gt~~L~al 630 (1429)
+.+.+.+.+++- +-.+...-| ..|...+...-.+|||+|||.+.|-..+
T Consensus 139 ~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~ 191 (245)
T PRK09136 139 LLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAAL 191 (245)
T ss_pred HHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHH
Confidence 455555666552 123334455 7888888777779999999999875543
No 476
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=64.01 E-value=64 Score=37.04 Aligned_cols=104 Identities=15% Similarity=0.034 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEec-CCCCCCccccccccccCCC-hHHHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISG-HDGGTGASSWTGIKNAGLP-WELGVAETHQVL 586 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG-~~GGTgaap~~~~~~~GiP-~~laL~ev~q~L 586 (1429)
++...++.+|+..-++..++-+.+..-+..+..-+- -+|.|.|=. ..|..|.. -+| +..=+.++++.+
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~--------f~~~~l~KI~~lr~~~ 173 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKA--------PSDLILDRVIQVENRL 173 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCcc--------ccHHHHHHHHHHHHHH
Confidence 466778888887422377888888776766543333 378776632 22221111 122 334456666666
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
.++++ ++.|.+||||. ..-+.++...|||.+=.|++
T Consensus 174 ~~~~~--~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 174 GNRRV--EKLISIDGSMT-LELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HhcCC--CceEEEECCCC-HHHHHHHHHCCCCEEEEChh
Confidence 66654 47799999998 45677889999998877775
No 477
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=63.92 E-value=23 Score=43.19 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=57.9
Q ss_pred ceEEEccccccccHHHHHHhCCCCc------------------------cccccccch----h-----------------
Q psy12805 1243 GLRIQAARCMECGVPFCQSSHGCPL------------------------GNIIPKWND----L----------------- 1277 (1429)
Q Consensus 1243 ~lvVIGaGcIgcE~a~c~s~~Gc~V------------------------~~iLp~~d~----l----------------- 1277 (1429)
.++|||||.-|+-.|.-+++.|+.| ..++|.+.. .
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 5899999999999999988877665 233333321 0
Q ss_pred -------hccchHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEeCCCeeEEEecEEEEecccc
Q psy12805 1278 -------IYHNNWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1278 -------vf~~e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~~gse~~ieaDlVLlAiG~~ 1339 (1429)
+-...+.+.+.+..++.| +..++++..+... .++. ......+. .++.++.||.|.|..
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~--~~~~-~~~~~~~~-~e~~a~~vI~AdG~~ 151 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRE--DDGV-VVGVRAGD-DEVRAKVVIDADGVN 151 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEe--CCcE-EEEEEcCC-EEEEcCEEEECCCcc
Confidence 111334455555555555 5556777666553 2333 22333333 689999999999965
No 478
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=63.72 E-value=57 Score=37.91 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHH--------------------HHHHHHhcCCcEEEEe-cCCCCCCc
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGV--------------------VASGVAKGKAEHIVIS-GHDGGTGA 562 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~--------------------vA~~~akaGaD~I~Is-G~~GGTga 562 (1429)
++.+++.+.-..|.+..+.-.|.||++... |+.. -|..++++|+++|..- |+
T Consensus 97 ~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgR------ 170 (252)
T cd00439 97 DDTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSR------ 170 (252)
T ss_pred CCHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEEeccH------
Confidence 345555555555555543234777877542 3322 2333677888877542 11
Q ss_pred cccccccccCC-------------ChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcc
Q psy12805 563 SSWTGIKNAGL-------------PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 563 ap~~~~~~~Gi-------------P~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~g 623 (1429)
+++++. +-+..+.++++.+..++.+.++ |. ..+|+..++..++ |++.+-+.
T Consensus 171 -----id~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tki-L~--AS~r~~~~v~~l~--G~d~vT~~ 234 (252)
T cd00439 171 -----IDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRV-LW--ASFSDTLYVAPLI--GCDTVTTM 234 (252)
T ss_pred -----HHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeE-EE--EeeCCHHHHHHhh--CCCeeecC
Confidence 222222 6666677888888788776544 33 3578999996655 88866433
No 479
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.60 E-value=52 Score=36.07 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCCeEEE--EeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 511 AELIYDLKCANPNARISV--KLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 511 ~qlI~~Lk~~~~~~pV~V--KLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
.+.|+.+|+..++.||.+ |+.. .+ -..+..+.++|+|+|++-+... | ..+.++.+...+
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~-~~-~~~~~~~~~aGad~i~~h~~~~---------------~--~~~~~~i~~~~~ 101 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTAD-AG-ALEAEMAFKAGADIVTVLGAAP---------------L--STIKKAVKAAKK 101 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecc-cc-HHHHHHHHhcCCCEEEEEeeCC---------------H--HHHHHHHHHHHH
Confidence 356777777666888887 5431 11 2346778999999999876531 1 123444555555
Q ss_pred cCCCCceEEEEc-CCcccHHHHHHHHHhcchhhhc
Q psy12805 589 NNLRSRVVLQAD-GQIRTGFDVVVAALLGADEIGL 622 (1429)
Q Consensus 589 ~gLR~~V~Lias-GGIrtg~Dv~kAlaLGAdavg~ 622 (1429)
+|+ .++++ =+..|+.++.+++..|+|.+.+
T Consensus 102 ~g~----~~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 102 YGK----EVQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred cCC----eEEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 553 44443 5678999999988889998765
No 480
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.49 E-value=60 Score=36.04 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecC-CCCCCccccccccccCCChHHHHHHHHHHH
Q psy12805 508 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGH-DGGTGASSWTGIKNAGLPWELGVAETHQVL 586 (1429)
Q Consensus 508 edL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~-~GGTgaap~~~~~~~GiP~~laL~ev~q~L 586 (1429)
++..+.++.+|.. +..+++-+.+...... .. ....++|+|.+... .|+||.+ +..-...-+.++.+..
T Consensus 96 ~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~-~~-~~~~~~d~i~~~~~~~g~tg~~-------~~~~~~~~i~~~~~~~ 164 (220)
T PRK05581 96 EHIHRLLQLIKSA--GIKAGLVLNPATPLEP-LE-DVLDLLDLVLLMSVNPGFGGQK-------FIPEVLEKIRELRKLI 164 (220)
T ss_pred hhHHHHHHHHHHc--CCEEEEEECCCCCHHH-HH-HHHhhCCEEEEEEECCCCCccc-------ccHHHHHHHHHHHHHH
Confidence 3445567777765 4666665533333322 22 23346898877654 4555421 1011122233333332
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
... +-.+.+.++|||+. .++.+++..|||.|-+|++.+
T Consensus 165 ~~~--~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 165 DER--GLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred Hhc--CCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhh
Confidence 111 11255779999998 788888889999998888543
No 481
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=63.02 E-value=9.2 Score=47.53 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=38.9
Q ss_pred CCcc-CCCCEEEeCCCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy12805 1365 TYLT-TVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLPDV 1413 (1429)
Q Consensus 1365 ~~~T-SvPgVFAAGD~a~g~~lvv~Ai~qGr~AA~nI~~~L~g~~~~p~~ 1413 (1429)
++++ .+|++|+||.+++. .--.+|..+|..|+.|+.+++.|++....|
T Consensus 324 ~l~~k~~~~l~~AGqi~g~-~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~ 372 (436)
T PRK05335 324 TLQLKKRPNLFFAGQITGV-EGYVESAASGLLAGINAARLALGKEPVIPP 372 (436)
T ss_pred hccccCCCCEEeeeeecCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 5777 68999999999763 223499999999999999999998765443
No 482
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=62.91 E-value=25 Score=40.18 Aligned_cols=65 Identities=29% Similarity=0.241 Sum_probs=45.0
Q ss_pred cCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 546 GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 546 aGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
.|-.+|-|.-.+|- .-.+|... +..+.+.+ ..++|+..||||+..|+-.++.+|||.|-+|+.
T Consensus 148 ~g~~~vYlE~gs~~----------g~~v~~e~-i~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~ 210 (223)
T TIGR01768 148 LGMPIIYLEAGSGA----------PEPVPPEL-VAEVKKVL------DKARLFVGGGIRSVEKAREMAEAGADTIVTGNV 210 (223)
T ss_pred cCCcEEEEEecCCC----------CCCcCHHH-HHHHHHHc------CCCCEEEecCCCCHHHHHHHHHcCCCEEEECcH
Confidence 48888888744221 11234322 34444432 148899999999999999999999999999985
Q ss_pred HH
Q psy12805 626 PL 627 (1429)
Q Consensus 626 ~L 627 (1429)
++
T Consensus 211 ~~ 212 (223)
T TIGR01768 211 IE 212 (223)
T ss_pred Hh
Confidence 54
No 483
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=62.18 E-value=15 Score=44.52 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 539 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 539 vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
.+..+.+.|+|+|.++-..- |.. +.+.+ ..++..+...... ..+++++-|||. ..++...+..||+
T Consensus 252 e~~~A~~~GaDYI~lGPvf~-T~t-------Kp~~~-~~Gle~l~~~~~~----~~iPv~AiGGI~-~~ni~~l~~~Ga~ 317 (347)
T PRK02615 252 EMAKAIAEGADYIGVGPVFP-TPT-------KPGKA-PAGLEYLKYAAKE----APIPWFAIGGID-KSNIPEVLQAGAK 317 (347)
T ss_pred HHHHHHHcCCCEEEECCCcC-CCC-------CCCCC-CCCHHHHHHHHHh----CCCCEEEECCCC-HHHHHHHHHcCCc
Confidence 34556788999999875432 211 11111 1222222222211 258999999995 8889999999999
Q ss_pred hhhcchhHH
Q psy12805 619 EIGLSTAPL 627 (1429)
Q Consensus 619 avg~gt~~L 627 (1429)
.|++.++.+
T Consensus 318 gVAvisaI~ 326 (347)
T PRK02615 318 RVAVVRAIM 326 (347)
T ss_pred EEEEeHHHh
Confidence 998877554
No 484
>PRK14057 epimerase; Provisional
Probab=62.09 E-value=1.1e+02 Score=35.92 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCC-------CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHH
Q psy12805 510 LAELIYDLKCANP-------NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 582 (1429)
Q Consensus 510 L~qlI~~Lk~~~~-------~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev 582 (1429)
+...|..+|+..- ....+|-+.+..-+..+..-+- -+|.|.|=..+-|.|.- .+=..+..=+.++
T Consensus 112 ~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~--~vD~VLvMtV~PGfgGQ------~Fi~~~l~KI~~l 183 (254)
T PRK14057 112 LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS--DVEVIQLLAVNPGYGSK------MRSSDLHERVAQL 183 (254)
T ss_pred HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH--hCCEEEEEEECCCCCch------hccHHHHHHHHHH
Confidence 5667777777631 0246777777766665543332 37877663222221110 1111233345566
Q ss_pred HHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 583 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 583 ~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
++.+.++++ .+.|.+||||... -+..+...|||.+=+|++
T Consensus 184 r~~~~~~~~--~~~IeVDGGI~~~-ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 184 LCLLGDKRE--GKIIVIDGSLTQD-QLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHhcCC--CceEEEECCCCHH-HHHHHHHCCCCEEEEChH
Confidence 666666654 5789999999844 577889999998877764
No 485
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=61.07 E-value=37 Score=43.58 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCeEEEEecc------------------------------------------ccChHHHHHHHHhcCCc
Q psy12805 512 ELIYDLKCANPNARISVKLVS------------------------------------------EVGVGVVASGVAKGKAE 549 (1429)
Q Consensus 512 qlI~~Lk~~~~~~pV~VKLv~------------------------------------------e~Gvg~vA~~~akaGaD 549 (1429)
++|+++-+.+++..|.|-+-+ ..+.-..+..+.+.||.
T Consensus 374 ~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag 453 (538)
T PLN02617 374 TSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG 453 (538)
T ss_pred HHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC
Q ss_pred EEEEe--cCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH-hcchhhhcchhH
Q psy12805 550 HIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAP 626 (1429)
Q Consensus 550 ~I~Is--G~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla-LGAdavg~gt~~ 626 (1429)
-|++. +++|. ..|...++. ..+.+.. .++||+|||+.+..|+..++. .||+++..++.+
T Consensus 454 eil~t~id~DGt----------~~G~d~~l~-~~v~~~~-------~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 454 EILLNCIDCDGQ----------GKGFDIELV-KLVSDAV-------TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred EEEEeecccccc----------ccCcCHHHH-HHHHhhC-------CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeee
No 486
>PRK08244 hypothetical protein; Provisional
Probab=61.05 E-value=33 Score=43.02 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEEe-CCCeeEEEecEEEEecccc
Q psy12805 1282 NWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDEV-PNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1282 e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~~-~gse~~ieaDlVLlAiG~~ 1339 (1429)
++.+.+.+.+++.| +..+.+++.++.. +++ +..... .++.+++++|+||.|-|..
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQD--GDG-VEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEc--CCe-EEEEEEeCCccEEEEeCEEEECCCCC
Confidence 45566666666656 5557777777542 233 332222 2233579999999999987
No 487
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=61.05 E-value=23 Score=40.71 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=29.6
Q ss_pred EEEEcCCcccHHHHHHHHHhcchhhhcchhHH
Q psy12805 596 VLQADGQIRTGFDVVVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 596 ~LiasGGIrtg~Dv~kAlaLGAdavg~gt~~L 627 (1429)
+|++.||||+..++..++..|||.+-+||.+.
T Consensus 186 pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 186 PLIYGGGIRSPEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEChHHh
Confidence 89999999999999999999999999998544
No 488
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=60.44 E-value=12 Score=43.37 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCc-eEEEEe-CCCeeEEEecEEEEecccc
Q psy12805 1282 NWSEALNQLLQTNN--FPAGIKTVKVEWTKDATGR-WKMDEV-PNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1282 e~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~-~~~v~~-~gse~~ieaDlVLlAiG~~ 1339 (1429)
++.+.+.+.+++.+ +..+.++..++.. .++. ...... +|..++++||+||-|-|..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d--~~~~~~~~~~~~~g~~~~i~adlvVgADG~~ 171 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQD--DDGVTVVVRDGEDGEEETIEADLVVGADGAH 171 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEE--TTEEEEEEEETCTCEEEEEEESEEEE-SGTT
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccc--ccccccccccccCCceeEEEEeeeecccCcc
Confidence 45566666665555 5557777766543 3332 222222 3445689999999999987
No 489
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=60.00 E-value=75 Score=36.32 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEec-CCCCCCccccccccccCCC-hHHHHHHHHHHH
Q psy12805 509 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISG-HDGGTGASSWTGIKNAGLP-WELGVAETHQVL 586 (1429)
Q Consensus 509 dL~qlI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG-~~GGTgaap~~~~~~~GiP-~~laL~ev~q~L 586 (1429)
++...+..+|+. +...++-|.+..-+..+..-+. -+|.|.|=. ..|..|. .+ +| +..=+.++.+.+
T Consensus 98 ~~~~~l~~Ir~~--g~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PGf~GQ-------~f-i~~~l~KI~~l~~~~ 165 (223)
T PRK08745 98 HVHRTIQLIKSH--GCQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPGFGGQ-------AF-IPSALDKLRAIRKKI 165 (223)
T ss_pred cHHHHHHHHHHC--CCceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCCCCCc-------cc-cHHHHHHHHHHHHHH
Confidence 366677888877 4677888877776665543332 468776532 2222111 11 22 334456666666
Q ss_pred HhcCCCCceEEEEcCCcccHHHHHHHHHhcchhhhcchh
Q psy12805 587 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 625 (1429)
Q Consensus 587 ~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAdavg~gt~ 625 (1429)
.++++ .+.|.+||||. ...+.+....|||.+=+|++
T Consensus 166 ~~~~~--~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 166 DALGK--PIRLEIDGGVK-ADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HhcCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 55554 47899999998 55677889999999988875
No 490
>PRK08227 autoinducer 2 aldolase; Validated
Probab=59.88 E-value=63 Score=37.90 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeccccC---------hHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCCh
Q psy12805 505 YSIEDLAELIYDLKCANPNARISVKLVSEVG---------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 575 (1429)
Q Consensus 505 ~siedL~qlI~~Lk~~~~~~pV~VKLv~e~G---------vg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~ 575 (1429)
..++++.+++++..+. +.|+.+ +.+ .| +...++.+++.|||+|.+. . |
T Consensus 124 ~~l~~l~~v~~ea~~~--G~Plla-~~p-rG~~~~~~~~~ia~aaRiaaELGADiVK~~-y-----------------~- 180 (264)
T PRK08227 124 QSIKNIIQLVDAGLRY--GMPVMA-VTA-VGKDMVRDARYFSLATRIAAEMGAQIIKTY-Y-----------------V- 180 (264)
T ss_pred HHHHHHHHHHHHHHHh--CCcEEE-Eec-CCCCcCchHHHHHHHHHHHHHHcCCEEecC-C-----------------C-
Confidence 4667888888887664 688887 333 12 3335566889999999842 1 1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCcccH-HHH----HHHHHhcchhhhcchhHH
Q psy12805 576 ELGVAETHQVLALNNLRSRVVLQADGQIRTG-FDV----VVAALLGADEIGLSTAPL 627 (1429)
Q Consensus 576 ~laL~ev~q~L~~~gLR~~V~LiasGGIrtg-~Dv----~kAlaLGAdavg~gt~~L 627 (1429)
...+.++.+. ..++|+.+||-++. +|+ ..++-.||..+.+|++.+
T Consensus 181 ~~~f~~vv~a-------~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 181 EEGFERITAG-------CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred HHHHHHHHHc-------CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 1234444332 36899999999964 333 556788888887777543
No 491
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=59.66 E-value=1.9e+02 Score=33.52 Aligned_cols=126 Identities=24% Similarity=0.220 Sum_probs=73.6
Q ss_pred HHHHhccCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecccc-ChHHH--------------------
Q psy12805 481 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVV-------------------- 539 (1429)
Q Consensus 481 ~~iA~~r~~~pg~~LisP~~h~di~siedL~qlI~~Lk~~~~~~pV~VKLv~e~-Gvg~v-------------------- 539 (1429)
+-+.++.+..||.-.++.+.-. ++-|...+.-..|.+..++.-|.||+++.. |+..+
T Consensus 51 ~~~~ei~~~v~G~v~e~~~~ls--~d~e~mi~eA~~L~~~~~~~~i~IKIP~T~eGl~Ai~~L~~eGI~~NvTLiFS~~Q 128 (239)
T COG0176 51 EFGKEILKIVPGRVTEVDEVLS--FDAEAMIEEARRLAKLIDNVGIVIKIPATWEGLKAIKALEAEGIKTNVTLIFSAAQ 128 (239)
T ss_pred HHHHHHHhcCCCCCeEeeeeec--ccHHHHHHHHHHHHHhcCcCCeEEEeCCCHHHHHHHHHHHHCCCeeeEEEEecHHH
Confidence 3345566667775333333322 133444444444555555555889988753 43321
Q ss_pred HHHHHhcCCcEEEEecCCCCCCcccccc-ccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcch
Q psy12805 540 ASGVAKGKAEHIVISGHDGGTGASSWTG-IKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 618 (1429)
Q Consensus 540 A~~~akaGaD~I~IsG~~GGTgaap~~~-~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGAd 618 (1429)
|..++++|+++| ||..+ +.+||+....++.++.+.+...+... .++++ -+.+++.++..+.++|||
T Consensus 129 Al~aa~aga~~i-----------SpFvgRi~D~~~d~~~~I~~~~~iy~~y~~~~-~~t~v-as~~~~~~~~~~~l~G~d 195 (239)
T COG0176 129 ALLAAEAGATYI-----------SPFVGRIDDWGIDGMLGIAEAREIYDYYKQHG-AKTLV-ASARFPNHVYIAALAGAD 195 (239)
T ss_pred HHHHHHhCCeEE-----------EeecchHHhhccCchHHHHHHHHHHHHhcccc-ceEEE-ecCccHHHHHHHHHhCCC
Confidence 112344454444 34433 37888888888888888876665431 34443 368999999999999977
Q ss_pred hhh
Q psy12805 619 EIG 621 (1429)
Q Consensus 619 avg 621 (1429)
.+-
T Consensus 196 ~~T 198 (239)
T COG0176 196 VLT 198 (239)
T ss_pred ccc
Confidence 663
No 492
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.42 E-value=15 Score=46.06 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=54.0
Q ss_pred CCCceEEEccccccccHHHHHHhCCCCccccccccchhhccchHHHHHHHHHHhCCCCCCcEEEEEEEeecCCCceEEEE
Q psy12805 1240 VRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDE 1319 (1429)
Q Consensus 1240 ~pk~lvVIGaGcIgcE~a~c~s~~Gc~V~~iLp~~d~lvf~~e~~~al~~~Le~~G~~~gv~v~~Ve~~k~~~G~~~~v~ 1319 (1429)
..+++.|+|+|.+|++++..+...|++|.-+=.. +. +....+.+.|++.|+. +. .. ... .
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~-~~-----~~~~~~~~~l~~~gv~----~~---~~---~~~-~--- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDG-DD-----ERHRALAAILEALGAT----VR---LG---PGP-T--- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-ch-----hhhHHHHHHHHHcCCE----EE---EC---CCc-c---
Confidence 4678999999999999988888889887422111 11 2334445556666532 11 10 000 0
Q ss_pred eCCCeeEEEecEEEEeccccCchhhh---hhccCcccc
Q psy12805 1320 VPNSEKIFKCDLVLLAMGFLGPERYI---ANELDLTLD 1354 (1429)
Q Consensus 1320 ~~gse~~ieaDlVLlAiG~~pp~~~L---le~lGLeld 1354 (1429)
....+|+||+++|..| +..+ +++.|+++.
T Consensus 75 -----~~~~~D~Vv~s~Gi~~-~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 75 -----LPEDTDLVVTSPGWRP-DAPLLAAAADAGIPVW 106 (480)
T ss_pred -----ccCCCCEEEECCCcCC-CCHHHHHHHHCCCeec
Confidence 1245899999999984 4444 455566553
No 493
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=59.26 E-value=44 Score=42.53 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhC-C--CCCCcEEEEEEEeecCCCceEEEEe--CCCeeEEEecEEEEecccc
Q psy12805 1283 WSEALNQLLQTN-N--FPAGIKTVKVEWTKDATGRWKMDEV--PNSEKIFKCDLVLLAMGFL 1339 (1429)
Q Consensus 1283 ~~~al~~~Le~~-G--~~~gv~v~~Ve~~k~~~G~~~~v~~--~gse~~ieaDlVLlAiG~~ 1339 (1429)
+.+.+.+.+.+. + +..+.+++.++.. +++ +..... +|+.+++.+|+||-|-|..
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~--~~~-v~v~~~~~~G~~~~i~ad~vVgADG~~ 173 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQD--DDG-VTVTLTDADGQRETVRARYVVGCDGAN 173 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEc--CCe-EEEEEEcCCCCEEEEEEEEEEecCCCc
Confidence 344444544443 4 5567888888652 333 333322 3445689999999999976
No 494
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=59.26 E-value=15 Score=47.14 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=44.4
Q ss_pred ccCccccCCCCEEecCCCCccCCCCEEEeCCCCCC---------CCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy12805 1348 ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG---------QSLVVWAISEGRQAAREIDSFLMGTST 1409 (1429)
Q Consensus 1348 ~lGLeld~~G~I~VD~~~~~TSvPgVFAAGD~a~g---------~~lvv~Ai~qGr~AA~nI~~~L~g~~~ 1409 (1429)
.-|+.+|.++.+.-.+ -+-+||+||||.|+.+ -..+-+|+--||.|++++.+.+.|+.+
T Consensus 505 ~GGl~id~~~qVld~~---g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~~ 572 (574)
T PRK12842 505 FDGLRTDVTGEVLDAD---GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGRKL 572 (574)
T ss_pred CCCcCCCCCceEECCC---CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhccccc
Confidence 3478888877654322 3579999999988642 124678999999999999999888754
No 495
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=58.38 E-value=18 Score=39.49 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=48.9
Q ss_pred CCeEEEEeccccChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCC
Q psy12805 523 NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQ 602 (1429)
Q Consensus 523 ~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGG 602 (1429)
+..|++- -..... +..+.+.|+|+|.++--.-++ .+-+. ..+++....+..... ++++++-||
T Consensus 95 ~~~ig~S---~h~~~e-~~~a~~~g~dYv~~gpvf~T~--------sk~~~-~~~g~~~l~~~~~~~----~~pv~AlGG 157 (180)
T PF02581_consen 95 DKIIGAS---CHSLEE-AREAEELGADYVFLGPVFPTS--------SKPGA-PPLGLDGLREIARAS----PIPVYALGG 157 (180)
T ss_dssp TSEEEEE---ESSHHH-HHHHHHCTTSEEEEETSS--S--------SSSS--TTCHHHHHHHHHHHT----SSCEEEESS
T ss_pred ceEEEee---cCcHHH-HHHhhhcCCCEEEECCccCCC--------CCccc-cccCHHHHHHHHHhC----CCCEEEEcC
Confidence 4555544 223333 566778999999998664321 12222 234444444433222 489999999
Q ss_pred cccHHHHHHHHHhcchhhhcc
Q psy12805 603 IRTGFDVVVAALLGADEIGLS 623 (1429)
Q Consensus 603 Irtg~Dv~kAlaLGAdavg~g 623 (1429)
| |..++..+..+||+.+.+-
T Consensus 158 I-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 158 I-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp ---TTTHHHHHHTT-SEEEES
T ss_pred C-CHHHHHHHHHcCCCEEEEE
Confidence 9 6889999999999877543
No 496
>PRK03903 transaldolase; Provisional
Probab=58.17 E-value=1.1e+02 Score=36.32 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCccc----HHHHHHHHHhcchhh
Q psy12805 575 WELGVAETHQVLALNNLRSRVVLQADGQIRT----GFDVVVAALLGADEI 620 (1429)
Q Consensus 575 ~~laL~ev~q~L~~~gLR~~V~LiasGGIrt----g~Dv~kAlaLGAdav 620 (1429)
-+..+..+++.+..+|.+..=.|++|-|+++ ..+++.++..|++..
T Consensus 158 gIa~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~ 207 (274)
T PRK03903 158 GIMNATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSIN 207 (274)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCee
Confidence 4455667777778887665556789999999 899999999997654
No 497
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=57.96 E-value=19 Score=45.46 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 538 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 538 ~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
..+..++++|+|.|+|+-..|.+ ...+..+..+++.. .+++||+ |-+.|...+..++.+||
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAHGHQ------------VKMISAIKAVRALD------LGVPIVA-GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCc------------HHHHHHHHHHHHHC------CCCeEEE-eccCCHHHHHHHHHhCC
Confidence 46677899999999999887542 23334444444432 2578887 66999999999999999
Q ss_pred hhhhcch
Q psy12805 618 DEIGLST 624 (1429)
Q Consensus 618 davg~gt 624 (1429)
|++.+|-
T Consensus 289 d~i~vg~ 295 (475)
T TIGR01303 289 NIIKVGV 295 (475)
T ss_pred CEEEECC
Confidence 9876554
No 498
>PRK06184 hypothetical protein; Provisional
Probab=57.88 E-value=45 Score=42.04 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCC--CCCCcEEEEEEEeecCCCceEEEE-eCCCeeEEEecEEEEeccccCchhhhhhccCcccc
Q psy12805 1283 WSEALNQLLQTNN--FPAGIKTVKVEWTKDATGRWKMDE-VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD 1354 (1429)
Q Consensus 1283 ~~~al~~~Le~~G--~~~gv~v~~Ve~~k~~~G~~~~v~-~~gse~~ieaDlVLlAiG~~pp~~~Lle~lGLeld 1354 (1429)
+.+.+.+.+.+.| +..+.+++.++. ++++ +.... ..++.+++.||.||.|.|.. +.+-+.+|++..
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~--~~~~-v~v~~~~~~~~~~i~a~~vVgADG~~---S~vR~~lgi~~~ 179 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQ--DADG-VTARVAGPAGEETVRARYLVGADGGR---SFVRKALGIGFP 179 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEE--cCCc-EEEEEEeCCCeEEEEeCEEEECCCCc---hHHHHhCCCCcc
Confidence 3455555565555 555777777754 2233 32222 12345689999999999976 334555565553
No 499
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=57.60 E-value=11 Score=42.08 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=50.1
Q ss_pred ChHHHHHHHHhcCCcEEEEecCCCCCCccccccccccCCChHHHHHHHHHHHHhcCCCCceEEEEcCCcccHHHHHHHHH
Q psy12805 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 614 (1429)
Q Consensus 535 Gvg~vA~~~akaGaD~I~IsG~~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~~gLR~~V~LiasGGIrtg~Dv~kAla 614 (1429)
.....|....++||+.|.+-.-++..+.+ + .-+..+.+. .+++|+.-|++++..++-.+..
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~----------~--~~~~~i~~~-------v~iPi~~~~~i~~~~~v~~~~~ 92 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGS----------L--EDLRAVREA-------VSLPVLRKDFIIDPYQIYEARA 92 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCC----------H--HHHHHHHHh-------cCCCEEECCeecCHHHHHHHHH
Confidence 35668888999999999887665443222 1 122223222 1588998899999998999999
Q ss_pred hcchhhhcch
Q psy12805 615 LGADEIGLST 624 (1429)
Q Consensus 615 LGAdavg~gt 624 (1429)
+|||.+-+++
T Consensus 93 ~Gad~v~l~~ 102 (217)
T cd00331 93 AGADAVLLIV 102 (217)
T ss_pred cCCCEEEEee
Confidence 9999886554
No 500
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=57.47 E-value=57 Score=36.98 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCeEEEEeccccChHHHHHHHHhcCCcEEEEecC----CCCCCccccccccccCCChHHHHHHHHHHHHh
Q psy12805 513 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGH----DGGTGASSWTGIKNAGLPWELGVAETHQVLAL 588 (1429)
Q Consensus 513 lI~~Lk~~~~~~pV~VKLv~e~Gvg~vA~~~akaGaD~I~IsG~----~GGTgaap~~~~~~~GiP~~laL~ev~q~L~~ 588 (1429)
.+..||+.. +.||+-=+................-+|.+.++.. .||||-+ .+|.+.-.
T Consensus 89 ~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~---------fDW~~l~~-------- 150 (208)
T COG0135 89 YIDQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQT---------FDWNLLPK-------- 150 (208)
T ss_pred HHHHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcE---------ECHHHhcc--------
Confidence 455666654 5666544443322222333345668899999975 5777654 56643311
Q ss_pred cCCCCceEEEEcCCcccHHHHHHHHHhcc
Q psy12805 589 NNLRSRVVLQADGQIRTGFDVVVAALLGA 617 (1429)
Q Consensus 589 ~gLR~~V~LiasGGIrtg~Dv~kAlaLGA 617 (1429)
.|...+++.+|||. +++|..|+.++.
T Consensus 151 --~~~~~~~~LAGGL~-p~NV~~ai~~~~ 176 (208)
T COG0135 151 --LRLSKPVMLAGGLN-PDNVAEAIALGP 176 (208)
T ss_pred --ccccCCEEEECCCC-HHHHHHHHHhcC
Confidence 12345699999995 999999998885
Done!