RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12805
(1429 letters)
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 959 bits (2482), Expect = 0.0
Identities = 403/864 (46%), Positives = 541/864 (62%), Gaps = 66/864 (7%)
Query: 178 DASLKC--LILVH----REVHHMCVLLGYGADAICPYLVFE----MAKSLRAEGNYCDAM 227
D L+C I+V R+ HH VLLG+GA A+ PYL +E + + +Y M
Sbjct: 643 DKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGDLVDTGEILKDYRQVM 702
Query: 228 -------ERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEV 280
+G+ K+M+KMGIST+ SY+G+Q+FEAVGL ++V++ CFKG SR+GG +FE
Sbjct: 703 LNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDDVVDLCFKGVVSRIGGASFED 762
Query: 281 LAQEAYDRHFLSYSERTADMLVLRNPG---YYHWRAGGEKHINDPVSIANLQEAASNNNK 337
Q+ + ++ R + G Y H GGE H +P + LQ+A + +
Sbjct: 763 FEQDQKNLSKRAWLARKP----IDQGGLLKYVH---GGEYHAYNPDVVNTLQKAVQSGDY 815
Query: 338 NAYDRFRES-NMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISI 396
+ Y + + N V +TLR L D P+ + EVEPA E+ KRF + AMS G++S
Sbjct: 816 SDYQEYAKLVNERPV--ATLRDLLALKPADNPIPLDEVEPAEELFKRFDSAAMSIGALSP 873
Query: 397 EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHAD 456
EAH LA AMN++G +SN+GEGGE+P RY + + S IKQVASGRFGVT +YL +A+
Sbjct: 874 EAHEALAIAMNRLGGRSNSGEGGEDPARYGT----EKVSKIKQVASGRFGVTPAYLVNAE 929
Query: 457 DLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYD 516
LQIK+AQGAKPGEGG+LPG KV IA R+SVPGV LISPPPHHDIYSIEDLA+LI+D
Sbjct: 930 VLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFD 989
Query: 517 LKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 576
LK NP A +SVKLVSE GVG +A+GVAK A+ I ISG+DGGTGAS T +K AG PWE
Sbjct: 990 LKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWE 1049
Query: 577 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMR 636
LG+AETHQ L N LR ++ LQ DG ++TG DV+ AA+LGA+ G T P++ +GC +R
Sbjct: 1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLR 1109
Query: 637 KCHLNTCPVGIATQDPELRKK-FAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695
CHLN C G+ATQD +LRK + G PE V+NY +AEE R MA+LG+R DL+GRT
Sbjct: 1110 ICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIGRT 1169
Query: 696 DLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEK-RLDNTLIQECE 754
DLL+ E G K + L+ + LL+ A P +E ++ +K L+ ++Q+ +
Sbjct: 1170 DLLEELE-GETAKQQKLDLSPLLETAEP--PAGKALYCTEERNPPFDKGLLNEQMLQQAK 1226
Query: 755 PVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAF 814
P + K + + I N R+ A LS I+ + +G+ + I L+ TG+AGQSF
Sbjct: 1227 PAIEAKQG-GEFWFDIRNTDRSVGARLSGEIARRHGNQGMADAPIKLRFTGTAGQSF--- 1282
Query: 815 LVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTST 874
GV + G+ + LEGDANDYVGKG++GG+I+I PP S
Sbjct: 1283 ---GV-------------------WNAGGLELYLEGDANDYVGKGMAGGKIVIRPPVGSA 1320
Query: 875 FESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAV 934
F S + I+GN CLYGAT GK F G A ERF+VRNSGA+AVVEG+GDHGCEYMTGG
Sbjct: 1321 FRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGCEYMTGGIVC 1380
Query: 935 ILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLE-LPEDLDYVKSLLVEFHE 993
+LG TG NF AGM+GG AYVLD DG F + N E+VE+L +E L ++++ L+ E E
Sbjct: 1381 VLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVE 1440
Query: 994 KTESEIAKNLLQTWPAPAKQFVKV 1017
+T SE + +L + ++F V
Sbjct: 1441 ETGSEWGEEILANFDDYLRKFWLV 1464
Score = 162 bits (413), Expect = 4e-40
Identities = 66/150 (44%), Positives = 89/150 (59%), Gaps = 14/150 (9%)
Query: 36 AHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDS------------GAA 83
AHNGEINT+ GN + +AR ++P IPD+++ P V SDS G
Sbjct: 239 AHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGM 298
Query: 84 DC--AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNG 141
D A+ +VP AWQN+ M + R FY + + MEPWDGPA + TDGRY LDRNG
Sbjct: 299 DLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGRYAACNLDRNG 358
Query: 142 LRPSRFYVLKDNVMVMASEVGVYDTDPANV 171
LRP+R+ + KD ++ +ASEVG++D P V
Sbjct: 359 LRPARYVITKDKLITLASEVGIWDYQPDEV 388
Score = 141 bits (359), Expect = 1e-33
Identities = 50/68 (73%), Positives = 56/68 (82%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KV IA R+SVPGV LISPPPHHDIYSIEDLA+LI+DLK NP A +SVKLVSE GVG
Sbjct: 951 KVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVG 1010
Query: 1076 VVASGVAK 1083
+A+GVAK
Sbjct: 1011 TIATGVAK 1018
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 684 bits (1768), Expect = 0.0
Identities = 283/487 (58%), Positives = 354/487 (72%), Gaps = 15/487 (3%)
Query: 222 NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVL 281
NY A+E+G+ K+M+KMGISTL SY+GAQ+FEAVGL+ +V++ F GT +R+GGI+ + +
Sbjct: 9 NYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIGGISLDEI 68
Query: 282 AQEAYDRHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYD 341
AQE RH + + + ++ V G+ R GGE H DP ++ LQ A + Y
Sbjct: 69 AQEISRRHRTAGAVKAKELDVG---GFGTERDGGEPHFYDPDTLFALQVATRSEGG--YR 123
Query: 342 RFRESN--MESVKYSTLRGQLDFVT-HDKPVDISEVEPAAEIVKRFATGAMSFGSISIEA 398
++E + + + +TLR LDF+ KP+ I EVEP E+ KRF TGAMSFG++S EA
Sbjct: 124 EYKEYSVLIGTRASTTLRDLLDFIADGSKPIPIEEVEPVLELKKRFVTGAMSFGALSKEA 183
Query: 399 HTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDL 458
H LA+AMN+IG KSNTGEGGE+PERY E+ RSAIKQVASGRFGVT YLA+AD +
Sbjct: 184 HEALARAMNRIGTKSNTGEGGEDPERY-----EDGRSAIKQVASGRFGVTPEYLANADAI 238
Query: 459 QIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLK 518
+IK+AQGAKPGEGG+LPG KVT +IA TR S PGVGLISPPPHHDIYSIEDLA+LI DLK
Sbjct: 239 EIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLK 298
Query: 519 CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 578
ANP A+ISVKLV+E GVG +A+GVAK A+ I I G DGGTGAS T I +AG+PWELG
Sbjct: 299 EANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELG 358
Query: 579 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKC 638
+AETHQ L LN LR +V L ADG +RTG DV AA LGAD +G TA L+ +GC M R C
Sbjct: 359 LAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVC 418
Query: 639 HLNTCPVGIATQDPELRKK--FAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTD 696
H TCPVGIATQDPELRK+ GKPE VINY +AEE+R +A LG R ++L+GRTD
Sbjct: 419 HTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGRTD 478
Query: 697 LLKPREV 703
LL+ +++
Sbjct: 479 LLRTKDL 485
Score = 130 bits (328), Expect = 2e-31
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KVT +IA TR S PGVGLISPPPHHDIYSIEDLA+LI DLK ANP A+ISVKLV+E GVG
Sbjct: 258 KVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVG 317
Query: 1076 VVASGVAKSIVSF 1088
+A+GVAK+
Sbjct: 318 TIAAGVAKAGADV 330
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a separate
subunit in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 575 bits (1485), Expect = 0.0
Identities = 229/371 (61%), Positives = 265/371 (71%), Gaps = 6/371 (1%)
Query: 318 HINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPA 377
H N+P I LQ+A + +YD++RE E V LR L+F + P+ I EVEPA
Sbjct: 1 HRNEPEVIKTLQKAVQVESYPSYDKYREPLNERVPIGALRDLLEFDYAEDPIPIEEVEPA 60
Query: 378 AEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAI 437
EI RF TGAMS+G++S EAH LAKAMN++G KSNTGEGGE+PER + D AI
Sbjct: 61 LEIKTRFCTGAMSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAAD----GAI 116
Query: 438 KQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLIS 497
KQVASGRFGVT YL +AD ++IK+AQGAKPGEGG LPG KV+ +IA R S PGVGLIS
Sbjct: 117 KQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVGLIS 176
Query: 498 PPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD 557
PPPHHDIYSIEDLA+LIYDLK NP A ISVKLVS GVG +A+GVAK A+ I+I GHD
Sbjct: 177 PPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHD 236
Query: 558 GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 617
GGTGAS T IK+AGLPWEL +AE HQ L N LR RV L ADG +RTG DV AA LGA
Sbjct: 237 GGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGA 296
Query: 618 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK--KFAGKPEHVINYLFMLAEE 675
D + + TA LI +GC M R CH NTCPVG+ATQDPELRK F G PE V+NY LAEE
Sbjct: 297 DAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNYFRFLAEE 356
Query: 676 VRTHMAKLGIR 686
VR +A LG
Sbjct: 357 VRELLAALGFN 367
Score = 130 bits (330), Expect = 1e-32
Identities = 51/69 (73%), Positives = 57/69 (82%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KV+ +IA R S PGVGLISPPPHHDIYSIEDLA+LIYDLK NP A ISVKLVS GVG
Sbjct: 157 KVSPEIARIRGSPPGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVG 216
Query: 1076 VVASGVAKS 1084
+A+GVAK+
Sbjct: 217 TIAAGVAKA 225
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 510 bits (1316), Expect = e-169
Identities = 183/341 (53%), Positives = 212/341 (62%), Gaps = 8/341 (2%)
Query: 361 DFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGE 420
D D+ E ++ F AMSFG++S EA LA G SNTGEGGE
Sbjct: 57 DEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGE 116
Query: 421 NPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT 480
PE E IKQVASGRFGV YL AD ++IK+ QGAKPGEGG LPG KVT
Sbjct: 117 LPEER-----EGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVT 171
Query: 481 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVA 540
++IA R PGV LISPPPHHDIYSIEDLA+LI DL+ A I VKLV+ G G +A
Sbjct: 172 EEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIA 231
Query: 541 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQAD 600
+GVA A+ I I G +GGTGA+ T I + GLP ELG+A HQ L N LR RV L A
Sbjct: 232 AGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIAS 291
Query: 601 GQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL--RKKF 658
G +RTG DV A LGAD +G+ TA LI +GC RKCH NTCPVG+ATQDPEL R
Sbjct: 292 GGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDV 351
Query: 659 AGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLK 699
GK E V NYL LAEE+R A LG R +L+GR+DLL
Sbjct: 352 EGKAERVANYLKSLAEELRELAAALGKRSL-ELLGRSDLLA 391
Score = 117 bits (295), Expect = 8e-28
Identities = 43/73 (58%), Positives = 51/73 (69%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KVT++IA R PGV LISPPPHHDIYSIEDLA+LI DL+ A I VKLV+ G G
Sbjct: 169 KVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG 228
Query: 1076 VVASGVAKSIVSF 1088
+A+GVA + F
Sbjct: 229 DIAAGVAAAGADF 241
>gnl|CDD|238482 cd00982, gltB_C, gltb_C. This domain is found at the C-terminus of
the large subunit (gltB) of glutamate synthase (GltS).
GltS encodes a complex iron-sulfur flavoprotein that
catalyzes the synthesis of L-glutamate from L-glutamine
and 2-oxoglutarate. It requires the transfer of ammonia
and electrons among three distinct active centers that
carry out L-Gln hydrolysis, conversion of 2-oxoglutarate
into L-Glu, and electron uptake from a donor. These
catalytic sites appear to occur in other domains within
the protein, and not the domain in this CD. This
particular domain has no known function, but it likely
has a structural role as it interacts with the
amidotransferase and FMN-binding domains of gltS.
Length = 251
Score = 404 bits (1040), Expect = e-131
Identities = 154/273 (56%), Positives = 182/273 (66%), Gaps = 25/273 (9%)
Query: 745 LDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLT 804
LD+ LI + EP L + LEY I N RA LS I+ + EEGLPE++I +K
Sbjct: 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFE 60
Query: 805 GSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGE 864
GSAGQSF AFL +GV + LEGDANDYVGK GLSGG
Sbjct: 61 GSAGQSFGAFLAKGVTLELEGDANDYVGK-------------------------GLSGGR 95
Query: 865 IIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHG 924
I++ PPK +TF+ ++N+I+GNVCLYGATSG+AF RG A ERF+VRNSGA AVVEGVGDHG
Sbjct: 96 IVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRAGERFAVRNSGATAVVEGVGDHG 155
Query: 925 CEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYV 984
CEYMTGG V+LG TGRNFAAGMSGG+AYVLD DG F KK N EMV+L LE ED + +
Sbjct: 156 CEYMTGGTVVVLGKTGRNFAAGMSGGVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQL 215
Query: 985 KSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKV 1017
K L+ E E T SE AK +L W A K+FVKV
Sbjct: 216 KELIEEHVEYTGSEKAKEILANWEAYLKKFVKV 248
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport and
metabolism].
Length = 301
Score = 315 bits (808), Expect = 1e-97
Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 30/284 (10%)
Query: 735 ETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGL 794
+ QDH LE LD L+++ + +G+ + + I N R+ A LS I+ +GL
Sbjct: 21 KRQDHGLEPVLDAKLLEDKPALENGE--IVKILAEIRNVDRSVGANLSGEIAKGYGLQGL 78
Query: 795 PENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDAND 854
PE+++ + GSAGQSF G AF +G + L GDAND
Sbjct: 79 PEDTVEINFNGSAGQSF--------------------G-----AFNAKGPTLELNGDAND 113
Query: 855 YVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAV 914
YVGKG+SGG+I++ P + F+++ N+IVGN LYGAT G+ F RG A ERF VRNSGA
Sbjct: 114 YVGKGMSGGKIVVRGP--ARFKAEANIIVGNTVLYGATGGELFIRGNAGERFGVRNSGAT 171
Query: 915 AVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGS-FAKKCNMEMVELL 973
AVVEG+GDHGCEYMTGG V+LG TGRNF AGMSGG+AYV GS F N E+VEL
Sbjct: 172 AVVEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVELE 231
Query: 974 PLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKV 1017
L ++ + +K L+ E E T SE AK +L+ W ++FVKV
Sbjct: 232 SLTEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKV 275
>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation
in bacteria, cyanobacteria and plants. The N-terminal
glutaminase domain catalyzes the hydrolysis of glutamine
to glutamic acid and ammonia, and has a fold similar to
that of other glutamine amidotransferases such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), and beta lactam synthetase (beta-LS), as well as
the Ntn hydrolase folds of the proteasomal alpha and
beta subunits.
Length = 413
Score = 239 bits (613), Expect = 1e-69
Identities = 79/155 (50%), Positives = 105/155 (67%), Gaps = 15/155 (9%)
Query: 35 VAHNGEINTVRGNVNFMKAREGVMKSPHI-PDIKQLYPVVEPNLSDSGAADC-------- 85
+AHNGEINT+RGN N+M+AREG++KSP D+K+L P++ P SDS + D
Sbjct: 227 LAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRS 286
Query: 86 ------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDR 139
A+M ++PEAWQN+ TM E R FY + + MEPWDGPA + FTDGR +GA LDR
Sbjct: 287 GRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDR 346
Query: 140 NGLRPSRFYVLKDNVMVMASEVGVYDTDPANVQLK 174
NGLRP+R+ + KD +++M+SEVGV D P V K
Sbjct: 347 NGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEK 381
>gnl|CDD|201826 pfam01493, GXGXG, GXGXG motif. This domain is found in glutamate
synthase, tungsten formylmethanofuran dehydrogenase
subunit c (FwdC) and molybdenum formylmethanofuran
dehydrogenase subunit c (FmdC). A repeated G-XX-G-XXX-G
motif is seen in the alignment.
Length = 198
Score = 227 bits (582), Expect = 2e-68
Identities = 98/224 (43%), Positives = 116/224 (51%), Gaps = 28/224 (12%)
Query: 766 LEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEG 825
+ I N R LS I+ K EEGL +++ + GSAGQSF
Sbjct: 1 KDEAIINTDRLVGTDLSGKITKKYGEEGL-KDTGEIVFNGSAGQSF-------------- 45
Query: 826 DANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGN 885
G AF+ GV + +EGDANDYVGKG+SGGEI+I E N I GN
Sbjct: 46 ------G-----AFMKGGVTLEVEGDANDYVGKGMSGGEIVIKGNAGDAGEYVGNGIAGN 94
Query: 886 VCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLTGRNFA 944
LYGAT G F G A ERF VRNSG V+EG GDHG EYMTGG V+LG GRN
Sbjct: 95 TVLYGATGGTIFIEGDAGERFGVRNSGGEIVIEGNAGDHGGEYMTGGRIVVLGDAGRNVG 154
Query: 945 AGMSGGIAYVLDVDG-SFAKKCNMEMVELLPLELPEDLDYVKSL 987
AGM+GG YVL N+E+VE +E PE +K L
Sbjct: 155 AGMTGGTIYVLGEIEDGLPGFVNLEIVEEERIEDPEGEKQLKEL 198
>gnl|CDD|238281 cd00504, GXGXG, GXGXG domain. This domain of unknown function is
found at the C-terminus of the large subunit (gltB) of
glutamate synthase (GltS), in subunit C of tungsten
formylmethanofuran dehydrogenase (FwdC) and in subunit C
of molybdenum formylmethanofuran dehydrogenase (FmdC).
It is also found in a primarily archeal group of
proteins predicted to encode part of the large subunit
of GltS. It is characterized by a repeated GXXGXXXG
motif. GltS is a complex iron-sulfur flavoprotein that
catalyzes the synthesis of L-glutamate from L-glutamine
and 2-oxoglutarate. It requires the transfer of ammonia
and electrons among three distinct active centers that
carry out L-Gln hydrolysis, conversion of 2-oxoglutarate
into L-Glu, and electron uptake from a donor. These
catalytic sites occur in other domains within the
protein or or encoded by separate genes, and are not
present in the domain in this CD. FwdC and FmdC are
reversible ion pumps that catalyze the formylation and
deformylation of methanofuran in hyperthermophiles and
bacteria. They require the presence of either tungstun
(FwdC) or molybdenum (FmdC). The specific function of
this domain also remains unidentified in the
formylmethanofuran dehydrogenases.
Length = 149
Score = 209 bits (535), Expect = 9e-63
Identities = 91/183 (49%), Positives = 107/183 (58%), Gaps = 35/183 (19%)
Query: 775 RAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKE 834
RA S +I K GLPE+++ + + GSAGQSF AF+
Sbjct: 1 RAVGTRGSRYI---GKRPGLPEDTVEIIINGSAGQSFGAFMA------------------ 39
Query: 835 SFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG 894
G +T+EG+ANDYVGKG+SGGEI+I+PP D+N I GNV LYGAT G
Sbjct: 40 --------GGTITVEGNANDYVGKGMSGGEIVIHPPA-----GDENGIAGNVALYGATGG 86
Query: 895 KAFFRGIAAERFSVRNSGAVAVVEGVGD-HGCEYMTGGCAVILGLTGRNFAAGMSGGIAY 953
K F RG A ERF VR SG VVEGVGD G EYMTGG V+LG GRNF AGMSGG+ Y
Sbjct: 87 KIFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIY 146
Query: 954 VLD 956
V
Sbjct: 147 VRG 149
>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
and metabolism].
Length = 371
Score = 173 bits (440), Expect = 4e-47
Identities = 63/144 (43%), Positives = 82/144 (56%), Gaps = 15/144 (10%)
Query: 35 VAHNGEINTVRGNVNFMKAREGVMKSPHIP-DIKQLYPVVEPNLSDSGAADC-------- 85
+ HNGEINT GN N+++AR +SP + +L P++ SDS + D
Sbjct: 228 LVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLG 287
Query: 86 ------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDR 139
A M + PEAW M E R FY + MEPWDGPA + FTDG GAILDR
Sbjct: 288 GRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGAILDR 347
Query: 140 NGLRPSRFYVLKDNVMVMASEVGV 163
NGLRP+R+++ KD +V+ASE GV
Sbjct: 348 NGLRPARYWITKDGEVVVASEAGV 371
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 164 bits (417), Expect = 4e-43
Identities = 56/113 (49%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 1299 GIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSN 1358
G+K V+ E G + V SE + DLVLLAMGF GPE + + + LD R
Sbjct: 364 GVKVVRTEL-----GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGR 418
Query: 1359 YSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411
+ + Y T+ P+V+AAGD RRGQSLVVWAI+EGRQAAR ID++LMG++ LP
Sbjct: 419 VAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTALP 471
Score = 141 bits (359), Expect = 2e-35
Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 1207 KTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCP 1266
K GF++Y R RP +R+KD+ E Y + +IQAARCM+CG+PFC GCP
Sbjct: 3 KPTGFLEYDRVDPKKRPVAERIKDFKEFYEPFS-EEQAKIQAARCMDCGIPFCHW--GCP 59
Query: 1267 LGNIIPKWNDLIYHNNWSEALNQLLQTNNFP 1297
+ N IP+WNDL+Y W EA +L QTNNFP
Sbjct: 60 VHNYIPEWNDLVYRGRWEEAAERLHQTNNFP 90
Score = 59.4 bits (145), Expect = 8e-09
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 1082 AKSIVSFEILPQPNPKRSQDNPWPQFPRIFKVDYGHEE-VKVKHNHDPREF 1131
AKS+ +I+P P +R+++NPWP +P +V HEE V+ + N +EF
Sbjct: 305 AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or
homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase small
subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 155 bits (394), Expect = 4e-40
Identities = 59/113 (52%), Positives = 83/113 (73%)
Query: 1299 GIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSN 1358
++TV+VEW K G+W+ E+P SE++F+ DLVLLAMGF+GPE+ + ++ + R N
Sbjct: 373 ALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGN 432
Query: 1359 YSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411
S Y T++P V+AAGDCRRGQSL+VWAI+EGR+AA +D +LMG+S LP
Sbjct: 433 ISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSVLP 485
Score = 129 bits (327), Expect = 2e-31
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1207 KTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCP 1266
K GF++Y R R RLKDW E ++ + QAARCM+CG PFC + GCP
Sbjct: 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNPFD-KESAKYQAARCMDCGTPFCHNDSGCP 59
Query: 1267 LGNIIPKWNDLIYHNNWSEALNQLLQTNNFP 1297
L N+IP++NDL++ W EAL++L TNNFP
Sbjct: 60 LNNLIPEFNDLVFRGRWKEALDRLHATNNFP 90
Score = 85.7 bits (212), Expect = 5e-17
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 1074 VGVVASGVAKSIVSFEILPQPNPKRSQDNPWPQFPRIFKVDYGHEEVKVKHNHDPREFCI 1133
VG A S+ FEI+P+P R++DNPWP++PR+++VDY HEE + DPRE+ I
Sbjct: 299 VGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSI 358
Query: 1134 LS 1135
L+
Sbjct: 359 LT 360
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 145 bits (368), Expect = 3e-39
Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 18/127 (14%)
Query: 35 VAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADCAVMTMVPEA 94
+AHNGEINT+RG N+M+AREGV S SDS A ++ ++ A
Sbjct: 115 LAHNGEINTLRGLRNWMRAREGVFNSG----------------SDS-EAFDNLLELLVRA 157
Query: 95 WQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNV 154
+ M E+R FY + A MEPWDGPA L FTDGRY+GA LDRNGLRP+R+ + +D +
Sbjct: 158 GR-SPDMDPEERAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGL 216
Query: 155 MVMASEV 161
+V+ASE
Sbjct: 217 IVVASEA 223
>gnl|CDD|218318 pfam04898, Glu_syn_central, Glutamate synthase central domain. The
central domain of glutamate synthase connects the amino
terminal amidotransferase domain with the FMN-binding
domain and has an alpha / beta overall topology. This
domain appears to be a rudimentary form of the
FMN-binding TIM barrel according to SCOP.
Length = 288
Score = 135 bits (343), Expect = 5e-35
Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 12/81 (14%)
Query: 189 REVHHMCVLLGYGADAICPYLVFEMAKSLRAEG------------NYCDAMERGISKVMA 236
REVHH VL+GYGA AI PYL +E + L G NY A+E+G+ K+M+
Sbjct: 206 REVHHFAVLIGYGASAINPYLAYETIRDLHRRGLLKELSLEEAVKNYRKAIEKGLLKIMS 265
Query: 237 KMGISTLQSYKGAQIFEAVGL 257
KMGISTLQSY+GAQIFEAVGL
Sbjct: 266 KMGISTLQSYRGAQIFEAVGL 286
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 114 bits (287), Expect = 2e-26
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 1299 GIKTVKVEWTKDATG--RWKMDEVPNSEKIFKCDLVLLAMGFLGPERY-IANELDLTLDP 1355
G+K +VE + G R V +EK D V+LA+GF G + E L LD
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLM 1405
R E T++P V+A GD RG +LVVWAI+EGR+AA+ ID L+
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAIDKELL 451
Score = 77.3 bits (191), Expect = 2e-14
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1227 RLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEA 1286
R KD+ E + +AARC++CG C + GCP+ N IP+ L+ EA
Sbjct: 2 RPKDFREAVVGSGPEAAIY-EAARCLDCG-DPCIT--GCPVHNDIPEPIGLVREGVDHEA 57
Query: 1287 LNQLLQTNNFPA 1298
+ + +TNN PA
Sbjct: 58 IKLIHKTNNLPA 69
Score = 30.7 bits (70), Expect = 5.7
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 1082 AKSIVSFEILPQPNPKRSQDNPWPQFPRIFKVDYGHEE-VKVKHNHDPREF 1131
AKS+ F + + N WP + +V EE V+ P+ F
Sbjct: 286 AKSVTCFY----REDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAF 332
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 104 bits (261), Expect = 4e-23
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 1298 AGIKTVKVEWTK-DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPR 1356
G++ V++E + DA+GR + + SE DLV+ A+G ++ L L+
Sbjct: 345 TGVEFVRMELGEPDASGR-RRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRW 403
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTST 1409
++T T++P V+A GD G + VVWA+ +G+ AA I +L G ++
Sbjct: 404 GTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGAAS 456
Score = 81.0 bits (201), Expect = 1e-15
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1209 RGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLG 1268
F+ R P + AE+R +++DE+ + + +A+RC++C C CP+
Sbjct: 1 LKFLTTPRIPMPRQDAEERAQNFDEVAPGYTPEEAIE-EASRCLQCKDAPCVK--ACPVS 57
Query: 1269 NIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298
IP++ LI N A +L+TN PA
Sbjct: 58 IDIPEFIRLIAEGNLKGAAETILETNPLPA 87
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 72.1 bits (177), Expect = 7e-14
Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 30/144 (20%)
Query: 29 ENTRKCVAHNGEINTVRGNVNFMKAREGVMKSPHIPDIKQLYPVVEPNLSDSGAADCAVM 88
E+ R + HNGEI R ++AR + SDS +
Sbjct: 94 EDGRIALVHNGEIYNYRELREELEARGYRFEG----------------ESDSEVILHLL- 136
Query: 89 TMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDG--RYIGAILDRNGLRPSR 146
E +G + + D A++ DGP DG + A DR G+RP
Sbjct: 137 ----ERLGREGGLFEAVED-------ALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLY 185
Query: 147 FYVLKDNVMVMASEVGVYDTDPAN 170
+ + KD +V ASE P
Sbjct: 186 YGITKDGGLVFASEPKALLALPFK 209
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 72.7 bits (179), Expect = 6e-13
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 1299 GIKTVKVEW-TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELD-LTLDPR 1356
G+K +K+E DA+GR + E+ SE + + D V++++G P I++ L ++ R
Sbjct: 354 GMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG-TSPNPLISSTTKGLKINKR 412
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
E+T LT+ V+A GD G + V+ A+ G++AA+ ID +L
Sbjct: 413 GCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYL 460
Score = 41.2 bits (97), Expect = 0.004
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 1220 PYRPAEKRLKDWDEI---YATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWND 1276
+ E R +++E+ Y + K +A+RC++C P C GCP+ IP +
Sbjct: 12 REQDPEVRATNFEEVCLGYNEEEAVK----EASRCLQCKKPKCVK--GCPVSINIPGFIS 65
Query: 1277 LIYHNNWSEALNQLLQTNNFPA 1298
+ ++ EA + + N PA
Sbjct: 66 KLKEGDFEEAAKIIAKYNALPA 87
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large subunit.
This model describes both glutatate synthase small
subunit and closely related paralogs of unknown function
from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 68.7 bits (168), Expect = 1e-11
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 1310 DATGRWKMDEVPNSEKIFKCDLVLLAMGF--LGPERYIANELDLTLDPRSNYSTVEKTYL 1367
DA GR + V SE + D+V++A GF + +TLD T + +YL
Sbjct: 368 DADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGH--GITLDSWGRIITGDVSYL 425
Query: 1368 ---TTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
TT P+++A GD RG LVV A++EGRQAA+ I +L
Sbjct: 426 PYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWL 465
Score = 63.7 bits (155), Expect = 4e-10
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1211 FIKYSRETAPYRPAEKRLKDWDEIYATQHVRKG-LRIQAARCMECGVPFCQSSHGCPLGN 1269
FI R+ P E+R + EIY G + QA RC+ CG P+C+ CP+ N
Sbjct: 3 FIDLPRQDPDKIPVEERKTHFREIY--CPFDPGQAQYQADRCLYCGNPYCEWK--CPVHN 58
Query: 1270 IIPKWNDLIYHNNWSEALNQLLQTNNFP 1297
IP+W L+ EA QTN P
Sbjct: 59 AIPQWLQLVQEGRIDEAAELSHQTNTLP 86
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta; Provisional.
Length = 752
Score = 60.1 bits (146), Expect = 7e-09
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 1310 DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIAN---ELDLTLDPRSNYSTVEKTY 1366
DA+GR + +P S DLV++++G + P + + L+L R V++
Sbjct: 656 DASGRRRPVAIPGSTFTVDVDLVIVSVG-VSPNPLVPSSIPGLELN---RKGTIVVDEEM 711
Query: 1367 LTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
+++P +YA GD RG + V+ A+ +G++AA ID +L
Sbjct: 712 QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYL 749
Score = 39.7 bits (93), Expect = 0.012
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1247 QAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298
+A RC++C P C GCP+G IP++ I N+ EA L +T+ PA
Sbjct: 327 EAKRCLDCKNPGCVE--GCPVGIDIPRFIKNIERGNFLEAAKILKETSALPA 376
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 58.1 bits (141), Expect = 1e-08
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 1299 GIKTVKVEWTK-DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANE-LDLTLDPR 1356
G++ K+ + D +GR + +P SE + + D V+ A+G + P A E L + L+ +
Sbjct: 244 GVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI-PTPPFAKECLGIELNRK 302
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGT 1407
EK ++T+ V+AAGD G S + AI G +AA+ I +L
Sbjct: 303 GEIVVDEK-HMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLDLK 352
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase large
subunit. The prototype of the family, from Pyrococcus sp.
KOD1, was shown to be active as a homotetramer and to
require NADPH [Amino acid biosynthesis, Glutamate
family].
Length = 449
Score = 58.3 bits (141), Expect = 2e-08
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 1300 IKTVKVEWTK----DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDP 1355
++ VK +G + ++E + D V++A+G G +A L
Sbjct: 343 VRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG-NGSNPIMAETTRLKTSE 401
Query: 1356 RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFL 1404
R V++ T++P V+A GD G + V+ A+ +G++AA+ I+ +L
Sbjct: 402 RGTI-VVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449
Score = 38.7 bits (90), Expect = 0.025
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1223 PAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNN 1282
P E+R K + E + L ++A RC+ C GCP+ IP++ I +
Sbjct: 1 PPEERSKLFQEAALGYTEQLAL-VEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQEGD 59
Query: 1283 WSEALNQLLQTNNFPA 1298
+ A++ + T+ PA
Sbjct: 60 FKGAVDIIKTTSLLPA 75
>gnl|CDD|238480 cd00980, FwdC/FmdC, FwdC/FmdC. This domain of unknown function is
found in the subunit C of formylmethanofuran
dehydrogenase, an enzyme that catalyzes the first step
in methane formation from CO2 in methanogenic archaea,
hyperthermophiles and bacteria. There are two
isoenzymes, a tungsten-containing isoenzyme (Fwd) and a
molybdenum-containing isoenzyme (Fmd). The subunits C of
both isoenzymes (FwdC/FmdC) are characterized by a
repeated GXXGXXXG motif.
Length = 203
Score = 52.4 bits (126), Expect = 2e-07
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 820 HVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDK 879
+ +EGD YVG ++G + +EG+A + G + GGEI I + +
Sbjct: 41 EIVVEGDVGMYVGAG------MKGGKLVVEGNAGSWAGCEMKGGEITI--------KGNA 86
Query: 880 NVIVGNVCLY-----GATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCA 933
VG Y G + G G A +R R +++G G M GG
Sbjct: 87 GDYVG--SAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTI 144
Query: 934 VILGLTGRNFAAGMSGGI 951
++ G G + M G
Sbjct: 145 IVRGDAGAHPGYEMKRGT 162
Score = 46.2 bits (110), Expect = 3e-05
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 801 LKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFL-----VRGVHVTLEGDANDY 855
L + G+AG S+ ++G +T++G+A DYVG A+ + G +T+EG+A D
Sbjct: 61 LVVEGNAG-SWAGCEMKGGEITIKGNAGDYVG----SAYRGDWRGMSGGTITIEGNAGDR 115
Query: 856 VGKGLSGGEIII 867
+G+ + GEI+I
Sbjct: 116 LGERMRRGEILI 127
Score = 31.9 bits (73), Expect = 1.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 817 RGVHVTLEGDANDYVGKE-------------SFCAFLVRGVHVTLEGDANDYVGKGLSGG 863
G +T+EG+A D +G+ F + G + + GDA + G + G
Sbjct: 102 SGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAHPGYEMKRG 161
Query: 864 EIIIY 868
I+I
Sbjct: 162 TIVIG 166
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 54.8 bits (132), Expect = 3e-07
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 1299 GIKTVKVEWTK-DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDP-- 1355
GI+ ++ + DA GR + +P SE + D V++A GF +T+D
Sbjct: 542 GIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWG 601
Query: 1356 RSNYSTVEK-TYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
R + Y T+ P+++A GD RG LVV A++EGR AA+ I
Sbjct: 602 RIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGI 647
Score = 48.6 bits (116), Expect = 3e-05
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 1223 PAEKRLKDWDEIY---ATQHVRKGLRIQAARCMECGV-PFCQSSHGCPLGNIIPKWNDLI 1278
E R +DEIY ++ +A+RC++CG C+ + CPL N IP+W +L+
Sbjct: 200 AIEARKTGFDEIYLPFRADQAQR----EASRCLKCGEHSICEWT--CPLHNHIPQWIELV 253
Query: 1279 YHNNWSEALNQLLQTNNFP 1297
N A+ QTN+ P
Sbjct: 254 KAGNIDAAVELSHQTNSLP 272
>gnl|CDD|238481 cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares
sequence similarity with a region of unknown function
found in the large subunit of glutamate synthase, which
is encoded by gltB and found in most bacteria and
eukaryotes. It is predicted to be homologous to the
C-terminal domain of glutamate synthase based upon
sequence similarity coupled with genome organization
data, showing that this domain is found in a gene
cluster with other domains of Glts, which are annotated.
This domain is found primarily in archaea, but is also
present in a few bacteria, likely as a result of lateral
gene transfer.
Length = 232
Score = 52.7 bits (127), Expect = 3e-07
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 838 AFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAF 897
AF+ G + + G+A D VG ++ G+I+I+ G+V Y GK F
Sbjct: 61 AFM-SGPTIIVYGNAQDDVGNTMNDGKIVIHGS------------AGDVLGYAMRGGKIF 107
Query: 898 FRGIAAERFSV-----RNSGAVAVVEG-VGDHGCEYMTGGCAVILGL------TGRNFAA 945
RG A R + ++ V V+ G GD EYM GG ++LGL GR
Sbjct: 108 IRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVIIVLGLGTDEEPVGRYIGT 167
Query: 946 GMSGGIAYV 954
GM GG+ Y+
Sbjct: 168 GMHGGVIYI 176
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 50.7 bits (121), Expect = 9e-07
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 500 PHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG 559
Y + ELI +L+ A P+ ++ VKL + A+ + + + + GG
Sbjct: 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLS--PTGELAAAAAEEAGVDEVGLGNGGGG 148
Query: 560 TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 619
G V +L L S+V + A G I D A LGAD
Sbjct: 149 GGGRD-------------AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADG 195
Query: 620 IGLST 624
+ + +
Sbjct: 196 VIVGS 200
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small
subunit; Provisional.
Length = 652
Score = 53.2 bits (128), Expect = 9e-07
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 1310 DATGRWKMDEVPNSEKIFKCDLVLLAMG-FLGPERYIANELDLTLDPRSNYSTVEKTYLT 1368
D +GR + V SE + D V+ A+G + P IA + +T T
Sbjct: 407 DESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP--IAEAAGIGTSRNGTVKVDPETLQT 464
Query: 1369 TVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMG 1406
+V V+A GDC G + + A+ +G++AA ID FL G
Sbjct: 465 SVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNG 502
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 53.0 bits (128), Expect = 1e-06
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 1282 NWSEALNQLLQTNNFPAGIKTVKVE-WTKDATGRWKMDEVPNSEKIFK--CDLVLLAMG- 1337
NW ++ N G++ + VE D GR P + + DLV+LA+G
Sbjct: 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGR----PSPVTGEEETLEADLVVLAIGQ 378
Query: 1338 ---FLGPERYIANELDLTLDPRSNYSTVEKTYLTT-VPRVYAAGDCRRGQSLVVWAISEG 1393
G E E+ V+ ++ T P V+A GD G V AI G
Sbjct: 379 DIDSAGLESVPGVEVG---RGVVQ---VDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHG 432
Query: 1394 RQAAREIDSFLMGTS 1408
++AAR ID+FL G
Sbjct: 433 KKAARNIDAFLGGEP 447
Score = 40.6 bits (96), Expect = 0.006
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 1221 YRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGV-----PFCQSSHGCPLGNIIPKWN 1275
A + + AT R +C V P C CP G I W
Sbjct: 16 AFDALTLPDGFSDEIATGPWRH----------KCPVYVDQTPPCN--AACPAGEDIRGWL 63
Query: 1276 DLIYHNNWSEALNQLLQTNNFPA 1298
L+ ++ A +L + N FPA
Sbjct: 64 ALVRGGDYEYAWRRLTKDNPFPA 86
Score = 37.2 bits (87), Expect = 0.065
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1211 FIKYSRETAPYRPAEKRLKDWDEI---YATQHVRKGLRIQAARCMECGVPF-CQSSHG-C 1265
F R P A++R+ D+DE+ + R+ +AARC+ CG F C + +G C
Sbjct: 467 FTDAPRAQRPELDADERVGDFDEVLGGLTEEEARQ----EAARCLSCGNCFECDNCYGAC 522
Query: 1266 PLGNII 1271
P II
Sbjct: 523 PQDAII 528
>gnl|CDD|132166 TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit
C. Members of this largely archaeal protein family are
subunit C of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdC)
from molybdenum-containing (FmdC) forms of this enzyme.
Length = 260
Score = 50.0 bits (120), Expect = 3e-06
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 821 VTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKN 880
+ +EGD +VG E ++G + + G+A+ ++G + GGEI + K + + +
Sbjct: 83 IVVEGDVGMHVGAE------MKGGKIVVNGNADSWLGCEMKGGEIEV---KGNAGDYVGS 133
Query: 881 VIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLT 939
G G + GK G A + R G ++EG G +M GG +I G
Sbjct: 134 AYRGEWR--GMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDV 191
Query: 940 GRNFAAGMSGG--IAY--VLDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFH 992
GR M G + ++ SF K + LPL L +F
Sbjct: 192 GRRPGGEMKRGTIVVGGKPDELLPSF-KFEGEHELPFLPLLLKSAFTQAIGTFRKFT 247
Score = 37.3 bits (87), Expect = 0.035
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 846 VTLEGDAN--DYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAA 903
+ ++GD + +G+ +S GEI++ E D VG GK G A
Sbjct: 62 LVIDGDTSRVKRIGERMSAGEIVV--------EGD----VGMHVGAEMKGGKIVVNGNAD 109
Query: 904 ERFSVRNSGAVAVVEG-VGDH-GCEY------MTGGCAVILGLTGRNFAAGMSGG 950
G V+G GD+ G Y M+GG ++ G G M GG
Sbjct: 110 SWLGCEMKGGEIEVKGNAGDYVGSAYRGEWRGMSGGKIIVEGNAGDYLGERMRGG 164
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 46.9 bits (111), Expect = 8e-05
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 1313 GRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTT--- 1369
GR + V SE D++++A GF + LD T + YL T
Sbjct: 540 GRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTH 599
Query: 1370 VPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ +V+A GD G LVV A++ GRQAAR++
Sbjct: 600 LKKVFAGGDAVHGADLVVTAMAAGRQAARDM 630
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 46.9 bits (112), Expect = 8e-05
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 1362 VEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
V+ T++ VY GD +RG S +V AI++ R+AA I
Sbjct: 799 VDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAI 837
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification,
protein turnover, chaperones].
Length = 305
Score = 46.1 bits (110), Expect = 8e-05
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1316 KMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYA 1375
+ V EK D V +A+G L + L + Y V++ T+VP ++A
Sbjct: 214 VLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDEN---GYIVVDEEMETSVPGIFA 270
Query: 1376 AGDCRRG-QSLVVWAISEGRQAAREIDSFL 1404
AGD + A +G AA + +L
Sbjct: 271 AGDVADKNGRQIATAAGDGAIAALSAERYL 300
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 45.7 bits (109), Expect = 9e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1318 DEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAG 1377
+ V E+ + D V +A+G + L+L + Y ++ T+VP V+AAG
Sbjct: 215 NTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELD---ENGYIVTDEGMRTSVPGVFAAG 271
Query: 1378 DCR-RGQSLVVWAISEGRQAAREIDSFL 1404
D R +G V A +G AA + +L
Sbjct: 272 DVRDKGYRQAVTAAGDGCIAALSAERYL 299
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 46.3 bits (110), Expect = 1e-04
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 1192 DVMGADKKKVDRSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARC 1251
+ D + D+ + R P E+R+K + EI + ++ +AARC
Sbjct: 129 NAKEPDNAPLGWVRDENSELLDLERVEMEEIPPEERVKSFIEIVKGYSKEQAMQ-EAARC 187
Query: 1252 MECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298
+ECG+ C + CP IP++ IY ++ E L L +TN
Sbjct: 188 VECGI--CTDT--CPAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSM 230
Score = 43.2 bits (102), Expect = 0.001
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 1299 GIKTVKVEWTKDATGRW--KMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPR 1356
G+K K D GR+ K DE + + I + D+V+ A+G Y+ EL L+
Sbjct: 497 GVKFKKCVEVFDEEGRFNPKFDE--SDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV 554
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMG 1406
+ T++P ++A GD G ++ +++G AA ID +L
Sbjct: 555 RGRILTNEYGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGIDMYLRK 603
>gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy
production and conversion].
Length = 264
Score = 43.5 bits (103), Expect = 4e-04
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 31/132 (23%)
Query: 821 VTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKN 880
+ +EGD +VG ++G + + G+A+ + G + GGEI I+
Sbjct: 88 IIVEGDVGMHVGAG------MKGGKIVVNGNADSWAGIEMKGGEIKIF------------ 129
Query: 881 VIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEG-VGDHGCEYMTGGCAVILGLT 939
GN Y + + +RG+ SG +VEG G+ E M GG ++ G
Sbjct: 130 ---GNAGDYVGCAYRGEWRGM---------SGGKIIVEGNAGNSIGELMRGGEIIVKGDA 177
Query: 940 GRNFAAGMSGGI 951
G+ M+GG
Sbjct: 178 GKFTGIHMNGGT 189
Score = 37.7 bits (88), Expect = 0.033
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 816 VRGVHVTLEGDANDYVGKESFCAFL-----VRGVHVTLEGDANDYVGKGLSGGEIII 867
++G + + G+A DYVG CA+ + G + +EG+A + +G+ + GGEII+
Sbjct: 121 MKGGEIKIFGNAGDYVG----CAYRGEWRGMSGGKIIVEGNAGNSIGELMRGGEIIV 173
Score = 33.9 bits (78), Expect = 0.47
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 805 GSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGE 864
G+AG S + G + ++GDA F + G + +EGDA D+VG + GG
Sbjct: 156 GNAGNSIGELMRGG-EIIVKGDAGK------FTGIHMNGGTIIIEGDAGDFVGGEMKGGT 208
Query: 865 IIIY 868
I++
Sbjct: 209 IVVD 212
Score = 30.8 bits (70), Expect = 4.8
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 846 VTLEGDA-NDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAE 904
V +E D G S EI S + + +G+ + G G +
Sbjct: 14 VPVEADVIFPDNFAGKSAEEI----KALSVYFGNLVEPLGD---FFEVEGNG---GDSGA 63
Query: 905 RFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYV 954
+ G V+ V+ +G E M+ G ++ G G + AGM GG V
Sbjct: 64 DTKISIDGDVSRVKRIG----ERMSAGEIIVEGDVGMHVGAGMKGGKIVV 109
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 43.0 bits (101), Expect = 0.001
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 1300 IKTVKVEWTK----DATGRWKMDEVPNSE-KIFKCDLVLLAMGFLGPERYIANELDLTLD 1354
++ +KVE + D GR K +P E K +CD V+ A+G + L L+
Sbjct: 643 VRGMKVEEMELGEPDEKGRRK--PMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALN 700
Query: 1355 PRSNYST----VEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTL 1410
N + +E T T +P V+A GD G + V+ A+ GR+AAR I ++L
Sbjct: 701 KWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKW 760
Query: 1411 PDVGGVITPYQSTGVLP 1427
P +Q +LP
Sbjct: 761 PITAEEAAAFQPGKLLP 777
Score = 42.2 bits (99), Expect = 0.002
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1220 PYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIY 1279
P R A +R +++ E+ + L+ +A RC++C P C + GCP+ IP + +
Sbjct: 303 PERDAVERARNFKEVNLGYSLEDALQ-EAERCIQCAKPTCIA--GCPVQIDIPVFIRHVV 359
Query: 1280 HNNWSEALNQLLQTNNFPA 1298
++ AL + + + FP+
Sbjct: 360 VRDFDGALEVIYEASIFPS 378
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 42.2 bits (100), Expect = 0.002
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 1299 GIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANELDLT 1352
K VE K G E I + D VL+A+G LG E +
Sbjct: 234 NTKVTAVE--KKDDGVLVTLEDGEGGTI-EADAVLVAIGRKPNTDGLGLE-----NAGVE 285
Query: 1353 LDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
LD R + V+ T VP +YA GD G L A++EGR AA I
Sbjct: 286 LDDR-GFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENI 332
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase,
type 2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the
type 2 enzyme. FMN, NADPH, and Mg2+ are required by this
form, which lacks homology to the type 1 enzyme
(TIGR02150). IPP is precursor to many compounds,
including enzyme cofactors, sterols, and isoprenoids
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 333
Score = 41.9 bits (99), Expect = 0.002
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 38/170 (22%)
Query: 531 VSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKN--------AGLPWELGVAE 581
V EVG G+ VAK +S D G G +SW ++N A + G+
Sbjct: 184 VKEVGFGISKE-VAK-LLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPT 241
Query: 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLN 641
+L + + + A G +RTG DV A LGAD +G++ P
Sbjct: 242 AASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA-RPF-------------- 286
Query: 642 TCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
L+ E VI + ++ EE++ M G + A+L
Sbjct: 287 ------------LKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAEL 324
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 42.5 bits (100), Expect = 0.002
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 1309 KDATGRWKMDEVPNSEKIFKCDLVLLAMGF-LGPERYIAN--ELDLTLDPRSNYSTVEKT 1365
DA+GR + + + D V+ A+G + + N LD P N +T E
Sbjct: 746 PDASGRRRPVGTGETVDL-PADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGE-- 802
Query: 1366 YLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
T + V+ GD RG + +V AI++GR+AA I
Sbjct: 803 --TNITNVFVIGDANRGPATIVEAIADGRKAANAI 835
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH binding
domain within a larger FAD binding domain.
Length = 283
Score = 41.2 bits (97), Expect = 0.003
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+ D+VL+A+G P + + + LD R Y V++ T+VP +YAAGD
Sbjct: 221 KLGDGEELDADVVLVAIGR-RPNTELLEQAGVELDER-GYIVVDEYLRTSVPGIYAAGDV 278
Query: 1380 RRG 1382
G
Sbjct: 279 AEG 281
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 38.0 bits (88), Expect = 0.035
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 1283 WSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPE 1342
+E L +LL+ + T V V + K DLV++ G P
Sbjct: 180 VAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER-PN 238
Query: 1343 RYIANELDLTLDPRSNYSTVEKTYLTT-VPRVYAAGDC 1379
+AN+ L V++ T+ P VYAAGD
Sbjct: 239 VVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDV 276
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 36.7 bits (86), Expect = 0.10
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 1299 GIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANELDLT 1352
G K VE K + + E + + D VL+A G LG E +
Sbjct: 229 GAKVTSVE--KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLE-----NTGIE 281
Query: 1353 LDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
LD R V++ T+VP +YAAGD
Sbjct: 282 LDER-GRPVVDEHTQTSVPGIYAAGDV 307
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to Hg(0)
utilizing NADPH [Cellular processes, Detoxification].
Length = 463
Score = 36.2 bits (84), Expect = 0.11
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 1319 EVPNSEKIFKCDLVLLAMGFLGPERYIANELDL-TLDPRSNYS---TVEKTYLTTVPRVY 1374
E P + + D +L+A G R + L L + + V++T T+ P +Y
Sbjct: 245 EKPGGQGEVEADELLVATG----RRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300
Query: 1375 AAGDCRRGQSLVVWAISEGRQAA 1397
AAGD G L A EG AA
Sbjct: 301 AAGDVTGGLQLEYVAAKEGVVAA 323
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
Two types of IDIs have been characterized at present.
The long known IDI-1 is only dependent on divalent
metals for activity, whereas IDI-2 requires a metal, FMN
and NADPH. IDI-2 catalyzes the interconversion of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP) in the mevalonate pathway.
Length = 326
Score = 35.9 bits (84), Expect = 0.13
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 55/180 (30%)
Query: 530 LVSEVGVGV--------VASGVAKGKAEHIVISGHDGGTGASSWTGI-----KNAGLP-- 574
+V EVG G+ +GV I ++G GGT SW + K++
Sbjct: 182 IVKEVGFGISRETAKRLADAGVK-----AIDVAGA-GGT---SWARVENYRAKDSDQRLA 232
Query: 575 ---WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 631
+ G+ +L + + + L A G IR G D+ A LGAD +G++ P +
Sbjct: 233 EYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA-GPFL--- 288
Query: 632 CTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
K E VI + + EE+RT M G + A+L
Sbjct: 289 ------------------------KAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAEL 324
>gnl|CDD|112730 pfam03930, Flp_N, Recombinase Flp protein N-terminus.
Length = 82
Score = 32.4 bits (74), Expect = 0.21
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 1135 SSTLSSSLQFRDDKTSVVFPYEYQRALKQILAEGVENKEKAIEYTPGFKLSNVKDIEDVM 1194
+S SLQ+ +V F Y +R L EG+ K F + + K +
Sbjct: 18 RRIISQSLQYDSSNKTVSFEYHLKRP--TELKEGLSKAFKPYN----FVIKSHKKPTSMT 71
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit
beta/2-polyprenylphenol hydroxylase; Provisional.
Length = 944
Score = 35.6 bits (82), Expect = 0.23
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1310 DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTT 1369
D +GR E++ DLV++A+G E L + + + T+
Sbjct: 533 DKSGRRSPKPTGEIERV-PVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTS 591
Query: 1370 VPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ VY+ GD RG S + A +G+ AA+EI
Sbjct: 592 IKGVYSGGDAARGGSTAIRAAGDGQAAAKEI 622
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This model
describes dihydrolipoamide dehydrogenase, a flavoprotein
that acts in a number of ways. It is the E3 component of
dehydrogenase complexes for pyruvate, 2-oxoglutarate,
2-oxoisovalerate, and acetoin. It can also serve as the L
protein of the glycine cleavage system. This family
includes a few members known to have distinct functions
(ferric leghemoglobin reductase and NADH:ferredoxin
oxidoreductase) but that may be predicted by homology to
act as dihydrolipoamide dehydrogenase as well. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 460
Score = 35.3 bits (82), Expect = 0.28
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 1330 DLVLLAMGF------LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ 1383
+ VL+A+G LG E +L + LD R V++ T VP +YA GD G
Sbjct: 259 EKVLVAVGRKPNTEGLGLE-----KLGVELDER-GRIVVDEYMRTNVPGIYAIGDVIGGP 312
Query: 1384 SLVVWAISEGRQAAREI 1400
L A EG AA I
Sbjct: 313 MLAHVASHEGIVAAENI 329
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 35.1 bits (82), Expect = 0.30
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 1323 SEKIFKCDLVLLAMGFLGPERYIAN--ELDL-----TLDPRSNYSTVEKTYLTTVPRVYA 1375
S K K D +L A G G N L+L D R V + Y T VP +YA
Sbjct: 255 SGKKIKADCLLYANGRTG------NTDGLNLENAGLEADSR-GQLKVNENYQTAVPHIYA 307
Query: 1376 AGDCRRGQSLVVWAISEGRQAAREI 1400
GD SL ++ +GR AA+
Sbjct: 308 VGDVIGFPSLASASMDQGRIAAQHA 332
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 34.8 bits (81), Expect = 0.37
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1356 RSNYSTVEKTYLTTVPRVYAAGDC 1379
S + TV++ T+VP +YAAGDC
Sbjct: 290 PSGHITVDRVSRTSVPGIYAAGDC 313
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 34.0 bits (79), Expect = 0.52
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 31/94 (32%)
Query: 600 DGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 659
DG IR G DV+ A LGAD + L L G+A
Sbjct: 231 DGGIRRGTDVLKALALGADAVLLGRPFL-----------------YGLAA---------G 264
Query: 660 GKP--EHVINYLFMLAEEVRTHMAKLGIRKFADL 691
G+ H + +L +E+ MA LG ADL
Sbjct: 265 GEAGVAHALE---ILRDELERTMALLGCTSIADL 295
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 33.6 bits (78), Expect = 0.76
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 24/69 (34%)
Query: 1311 ATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTV 1370
A GR VPN++ DL L A G + D R Y V+ TT
Sbjct: 266 AVGR-----VPNTD-----DLGLEAAG-------------VETDAR-GYIKVDDQLRTTN 301
Query: 1371 PRVYAAGDC 1379
P +YAAGDC
Sbjct: 302 PGIYAAGDC 310
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
family occurs in both prokaryotes and eukaryotes.
Members of this family include flavocytochrome b2
(FCB2), glycolate oxidase (GOX), lactate monooxygenase
(LMO), mandelate dehydrogenase (MDH), and long chain
hydroxyacid oxidase (LCHAO). In green plants, glycolate
oxidase is one of the key enzymes in photorespiration
where it oxidizes glycolate to glyoxylate. LMO catalyzes
the oxidation of L-lactate to acetate and carbon
dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
It is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate.
Length = 299
Score = 33.2 bits (77), Expect = 0.83
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 27/101 (26%)
Query: 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQ 650
+ R+ + DG IR G DV+ A LGAD + + L G+A
Sbjct: 224 VGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY-----------------GLA-- 264
Query: 651 DPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
AG V + L +L +E+ MA LG ADL
Sbjct: 265 --------AGGEAGVAHVLEILRDELERAMALLGCASLADL 297
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC 1.8.1.14),
as characterized in Staphylococcus aureus, Pyrococcus
horikoshii, and Borrelia burgdorferi, and inferred in
several other species on the basis of high levels of CoA
and an absence of glutathione as a protective thiol
[Cellular processes, Detoxification].
Length = 427
Score = 33.2 bits (76), Expect = 1.0
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1323 SEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
S +++ D+V+LA G + P +A + L L EK + T+VP +YAAGD
Sbjct: 216 SGGVYQADMVILATG-IKPNSELAKDSGLKLGETGAIWVNEK-FQTSVPNIYAAGDV 270
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 33.0 bits (76), Expect = 1.2
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 27/93 (29%)
Query: 599 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF 658
ADG IR+G DV A LGAD +G+ R P L
Sbjct: 278 ADGGIRSGLDVAKALALGADAVGIG------------R---------------PFLYGLA 310
Query: 659 AGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
AG V L ++ +E++ MA G + +L
Sbjct: 311 AGGEAGVERVLEIIRKELKIAMALTGAKNIEEL 343
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 33.0 bits (75), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1361 TVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397
+++ TTV +YAAGDC V A + G +AA
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAA 329
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 32.3 bits (74), Expect = 2.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 731 RAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINN 772
R G E RLD +L+ ECE V +G+V Y + N
Sbjct: 412 RHGDRAPAWLSEGRLDRSLVCECEAVTAGEV-----RYAVEN 448
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into protein
(as selenocysteine), tRNA (as 2-selenouridine), or both.
However, some members of this family occur in species
that do not show selenium incorporation, and the function
of this protein family is unknown.
Length = 364
Score = 31.1 bits (71), Expect = 4.0
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 1328 KCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC-------- 1379
D +L A G P E L LD + P V+AAGDC
Sbjct: 231 PADAILWATGARAP--PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR 288
Query: 1380 -RRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411
+ G V+A+ + A + + L G P
Sbjct: 289 PKAG----VYAVRQAPILAANLRASLRGQPLRP 317
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 31.3 bits (72), Expect = 4.4
Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 51/163 (31%)
Query: 553 ISGHDGGTGASSWTGIKNA--------------GLPWELGVAETHQVLALNNLRSRVVLQ 598
++G GGT SW I+N G+P A++ +L +L + +
Sbjct: 216 VAGA-GGT---SWAAIENYRARDDRLASYFADWGIP----TAQS--LLEARSLLPDLPII 265
Query: 599 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF 658
A G IR G D+ A LGAD +G++ P L+
Sbjct: 266 ASGGIRNGLDIAKALALGADAVGMA-GPF--------------------------LKAAL 298
Query: 659 AGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701
G E VI + EE++ M G + A+L +L
Sbjct: 299 EGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSGE 341
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 31.3 bits (72), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1362 VEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAR 1398
V++ T VP +YA GD L AI+ GR+ +
Sbjct: 287 VDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSE 323
>gnl|CDD|239263 cd02965, HyaE, HyaE family; HyaE is also called HupG and HoxO. They
are proteins serving a critical role in the assembly of
multimeric [NiFe] hydrogenases, the enzymes that
catalyze the oxidation of molecular hydrogen to enable
microorganisms to utilize hydrogen as the sole energy
source. The E. coli HyaE protein is a chaperone that
specifically interacts with the twin-arginine
translocation (Tat) signal peptide of the [NiFe]
hydrogenase-1 beta subunit precursor. Tat signal
peptides target precursor proteins to the Tat protein
export system, which facilitates the transport of fully
folded proteins across the inner membrane. HyaE may be
involved in regulating the traffic of [NiFe]
hydrogenase-1 on the Tat transport pathway.
Length = 111
Score = 29.2 bits (66), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 122 PALLTFTDGRYIGAILDRNGLRP 144
PALL F DGRY+G + G+R
Sbjct: 85 PALLFFRDGRYVGVL---AGIRD 104
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 31.3 bits (71), Expect = 5.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 1368 TTVPRVYAAGDCR-RGQSLVVWAISEGRQAAREIDSFLMGTST 1409
T VP VYAAGD R + VV A+++G AA + ++
Sbjct: 271 TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELKE 313
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the N-terminal
half. The extreme C-terminal region consists of a motif
with consensus sequence MSEP, then a transmembrane alpha
helix, then a short region with several basic residues.
This region, hereby dubbed MSEP-CTERM, resembles other
putative sorting signals associated with the
archaeosortase/exosortase protein family (see TIGR04178).
Genes for all members of this family are found next to a
gene for exosortase K.
Length = 920
Score = 31.2 bits (71), Expect = 5.3
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 1170 ENKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYR 1222
N A+ YT SN + + D ++++RS+ + SR
Sbjct: 361 NNFHTALRYTYSPNASNTQYAK----VDTERLERSLKNIDKGKRRSRWVGFGS 409
>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
Length = 724
Score = 31.2 bits (70), Expect = 5.3
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 1077 VASGVAKSIVSFEILPQPNPKRSQDNP--------WPQFPRIFKVDYGHEEVKVKHNHDP 1128
+ + S +LP P+P +P P +FK K + P
Sbjct: 3 SSPTSSSSSSFLSLLPNPSPNFRTTHPNFGSQRRIGTINP-LFK------SFKCIQSPPP 55
Query: 1129 REFCILSSTLS-SSLQFRDDKTSVVFPYEYQRALK--QILAEGVENKEKAIEYT---PGF 1182
+S S S++ F +T+ + P + QR +K + L E V+ ++ + Y P
Sbjct: 56 DSAPSNASPFSCSAVAFSPSQTTELVPCKLQRLIKEFKSLTEPVDRVKRLLHYASLLPPL 115
Query: 1183 KLSNVKDIEDVMG 1195
S+ + VMG
Sbjct: 116 PESSRVESNRVMG 128
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 30.9 bits (70), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 1361 TVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397
+++ T+VP +YAAGDC V A + G +AA
Sbjct: 386 VIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAA 422
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 30.7 bits (70), Expect = 6.6
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 1298 AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANELDL 1351
G K V V +T DA G + + D +++++G LG E + L
Sbjct: 252 TGGKGVSVAYT-DADG---------EAQTLEVDKLIVSIGRVPNTDGLGLE-----AVGL 296
Query: 1352 TLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDS 1402
LD R + V+ T VP VYA GD RG L A EG A I
Sbjct: 297 KLDERG-FIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAG 346
>gnl|CDD|218615 pfam05504, Spore_GerAC, Spore germination B3/ GerAC like, C-terminal.
The GerAC protein of the Bacillus subtilis spore is
required for the germination response to L-alanine.
Members of this family are thought to be located in the
inner spore membrane. Although the function of this
family is unclear, they are likely to encode the
components of the germination apparatus that respond
directly to this germinant, mediating the spore's
response.
Length = 171
Score = 29.8 bits (68), Expect = 6.7
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 23/79 (29%)
Query: 1176 IEYTPGFKLSN---VKDIEDVMGAD-KKKVDRSIDKTR--------GF-----IKYSRET 1218
EY L N +K +E + + KK++++ I K + GF KY +
Sbjct: 81 SEYQSPLDLFNPKELKKLEKALEKEIKKEIEKLIKKLQKEYKVDIFGFGEYLRRKYPKLW 140
Query: 1219 APYRPAEKRLKDWDEIYAT 1237
+K K+WDEI+
Sbjct: 141 ------KKIKKNWDEIFPN 153
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 30.9 bits (70), Expect = 7.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 259 EEVINKCFKGTPSRLGGITFEVLAQEAYDR-HFLSY-SERTADMLVLRNPGYYHWRAGGE 316
E++++K + F + AYDR H SY S TA+ L L G+Y E
Sbjct: 20 EDLLDK---ADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFY------E 70
Query: 317 KH 318
KH
Sbjct: 71 KH 72
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 30.3 bits (68), Expect = 7.7
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDP---RSNYS---TVEKTYLTTVPRVYAAGDCRRG 1382
+ +L++ G R+ AN DL L+ ++ S V T+ P +YAAGDC
Sbjct: 272 AEKLLISTG-----RH-ANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDL 325
Query: 1383 QSLVVWAISEGRQAAREI--DSFLMGTSTLPDV 1413
V A + G +A + + + S +P V
Sbjct: 326 PQFVYVAAAAGSRAGINMTGGNATLDLSAMPAV 358
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 30.4 bits (69), Expect = 8.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 599 ADGQIRTGFDVVVAALLGAD 618
AD IR G DVV LGAD
Sbjct: 305 ADSGIRNGLDVVRMIALGAD 324
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.4 bits (68), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1358 NYSTVEKTYLTTVPRVYAAGDC 1379
Y V+ T+V +YA GDC
Sbjct: 353 GYIKVDDNQRTSVKHIYAVGDC 374
>gnl|CDD|217752 pfam03833, PolC_DP2, DNA polymerase II large subunit DP2.
Length = 852
Score = 30.5 bits (69), Expect = 8.8
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 1124 HNHDPREFCILSSTLSSSLQFRDDKTSVVFPYEYQRALKQIL-AEGVENKEK-------- 1174
H+ + L + + ++ + V Y + K+IL A GV +K +
Sbjct: 469 HDISVEDLEYLRNAVEDETEWSNKDDKGVLLLPYDTSAKEILEALGVPHKVRDSFVVIDQ 528
Query: 1175 --AIEYTPGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYR 1222
+ + G+ + K+ + K V ++++ R AP R
Sbjct: 529 YYPLARSLGYDVFLDKENREKPAESKSNVLEAVNELSPI--KVRPRAPTR 576
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 72,991,085
Number of extensions: 7331213
Number of successful extensions: 6223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6103
Number of HSP's successfully gapped: 112
Length of query: 1429
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1320
Effective length of database: 6,103,016
Effective search space: 8055981120
Effective search space used: 8055981120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.9 bits)