RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12805
(1429 letters)
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 1480 bits (3835), Expect = 0.0
Identities = 381/843 (45%), Positives = 507/843 (60%), Gaps = 49/843 (5%)
Query: 189 REVHHMCVLLGYGADAICPYLVFEMAKSLRAEG------------NYCDAMERGISKVMA 236
+ H+ VL+G GA + YL E G NY A++ G+ K+M+
Sbjct: 650 LDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMS 709
Query: 237 KMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSER 296
KMGIS + SY+G FEA+GL+ ++ + F SR+ GI + ++ ++H +Y+E
Sbjct: 710 KMGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGIGLNGIQKKVLEQHATAYNEE 769
Query: 297 TADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTL 356
L G+Y +R G++H + I LQ+A +N++ + ++ E + L
Sbjct: 770 VV---ALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQ-VNKRPPMQL 825
Query: 357 RGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTG 416
R L+ + PV + EVE I KRF T MS G++S EAH TL AMN+IGAKS++G
Sbjct: 826 RDLLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSG 885
Query: 417 EGGENPERY--LSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGEL 474
EGGE+P R+ +GD N SAIKQVASGRFGVT+ YL +L+IK+AQGAKPGEGG+L
Sbjct: 886 EGGEDPARFRPDKNGD-NWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQL 944
Query: 475 PGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEV 534
PG+KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A+++VKLVS
Sbjct: 945 PGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRS 1004
Query: 535 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSR 594
G+G +A+GVAK A+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR R
Sbjct: 1005 GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHR 1064
Query: 595 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL 654
V L+ DG ++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +L
Sbjct: 1065 VRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKL 1124
Query: 655 RKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNF 714
R+KF G PE V+N LAEEVR +A LG R +++GRTDLL L+
Sbjct: 1125 RQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLLHQVS-RGAEHLDDLDL 1183
Query: 715 AFLLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNEC 774
L PG N R + +++ LD ++ + P+ + L Y N
Sbjct: 1184 NPRLAQV---DPGENARYCTLQGRNEVPDTLDARIVADARPLFEEGEK-MQLAYNARNTQ 1239
Query: 775 RAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKE 834
RA LS ++ K GL I ++L G+AGQS AF V+G + LE
Sbjct: 1240 RAIGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQG--IKLE---------- 1287
Query: 835 SFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG 894
+ GDANDYVGKGLSGG I++ P +S E++KN I+GN LYGAT+G
Sbjct: 1288 -------------VMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAG 1334
Query: 895 KAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYV 954
K F G A ERF+VRNSGA VVEG G +GCEYMTGG AVILG G NFAAGM+GG+AYV
Sbjct: 1335 KLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGMTGGMAYV 1394
Query: 955 LDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQF 1014
D+D S N E V +E+ +K L+ E +T+S A +L W +F
Sbjct: 1395 YDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREVTKF 1454
Query: 1015 VKV 1017
+V
Sbjct: 1455 WQV 1457
Score = 262 bits (673), Expect = 2e-71
Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 15/155 (9%)
Query: 35 VAHNGEINTVRGNVNFMKAREGVMKSPHI-PDIKQLYPVVEPNLSDSGAADC-------- 85
+AHNGEINTV+GNVN+MKA E M+ P ++ L PV+ LSDSG+ D
Sbjct: 228 LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRA 287
Query: 86 ------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILDR 139
M +VP+A + T PD + + MEPWDGPA L TDGR++ +DR
Sbjct: 288 GRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDR 347
Query: 140 NGLRPSRFYVLKDNVMVMASEVGVYDTDPANVQLK 174
NGLRP R+ + D +++ SE G+ D V K
Sbjct: 348 NGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEK 382
Score = 176 bits (449), Expect = 1e-44
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A+++VKLVS G+G
Sbjct: 948 KVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIG 1007
Query: 1076 VVASGVAK 1083
+A+GVAK
Sbjct: 1008 TIAAGVAK 1015
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 1443 bits (3738), Expect = 0.0
Identities = 387/880 (43%), Positives = 505/880 (57%), Gaps = 84/880 (9%)
Query: 189 REVHHMCVLLGYGADAICPYLVFEMAKSLR---------------------AEGNYCDAM 227
HH L+GYGA AICPYL E + A NY ++
Sbjct: 648 WSTHHFACLVGYGASAICPYLALESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSV 707
Query: 228 ERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYD 287
E G+ K+++KMGIS L SY GAQIFEA+GL E++ F GT SR+GG+T +A E
Sbjct: 708 EAGLFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTTSRVGGLTIADVAGEVMV 767
Query: 288 RHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAA-------SNNNKNAY 340
H +++ E L N G+ ++R GGE H+N P +L +A + NN AY
Sbjct: 768 FHGMAFPEMAKK---LENFGFVNYRPGGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGEAY 824
Query: 341 DRFRE--SNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEA 398
D + ++ + LR LDF + + EVE IVKRF TG MS G++S EA
Sbjct: 825 DHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREA 884
Query: 399 HTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE-------------------NQRSAIKQ 439
H TLA AMN++GAKSN+GEGGE+ RYL+ D SAIKQ
Sbjct: 885 HETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQ 944
Query: 440 VASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPP 499
+ASGRFGVT YL L+IKMAQGAKPGEGG+LPG KV++ IA R S PGV LISPP
Sbjct: 945 IASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPP 1004
Query: 500 PHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG 559
PHHDIYSIEDLA+LIYDL NP A++SVKLV+E+G+G +A+GVAK A+ I ISGHDGG
Sbjct: 1005 PHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGG 1064
Query: 560 TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 619
TGAS + IK+AG PWELGV E H+VL N LR RV+L+ADG ++TG+DVV+AAL+GA+E
Sbjct: 1065 TGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEE 1124
Query: 620 IGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTH 679
G + +I GC M R CH N CPVG+ATQ LR++F G P V+N+ + +AEEVR+
Sbjct: 1125 YGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSL 1184
Query: 680 MAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDH 739
+A LG R D++GRTDLLK R K + L LL N + + H
Sbjct: 1185 LAHLGYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLDCLLNLP---DTKQNRQWLNHEPVH 1241
Query: 740 QLEKRLDNTLIQE--CEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPEN 797
LD+ ++ + + ++ + Y + N R LS I+ K G
Sbjct: 1242 SNGPVLDDDILADPDIQEAINHQTT-ATKTYRLVNTDRTVGTRLSGAIAKKYGNNGFE-G 1299
Query: 798 SINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVG 857
+I L G+AGQSF AF + G +TL L+G+ANDYVG
Sbjct: 1300 NITLNFQGAAGQSFGAFNLDG--MTLH-----------------------LQGEANDYVG 1334
Query: 858 KGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVV 917
KG++GGEI+I P ++F + NVI+GN CLYGAT G + G A ERF+VRNS AV+
Sbjct: 1335 KGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVI 1394
Query: 918 EGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLEL 977
EG GDH CEYMTGG V+LG GRN AGM+GG+AY LD G +K N E++ L +
Sbjct: 1395 EGAGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITA 1454
Query: 978 PEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKV 1017
+ + +KSL+ E T S K +L W +F +
Sbjct: 1455 SKGEEQLKSLITAHVEHTGSPKGKAILANWSDYLGKFWQA 1494
Score = 255 bits (654), Expect = 5e-69
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 18/158 (11%)
Query: 35 VAHNGEINTVRGNVNFMKAREGVMKSPHI--PDIKQLYPVVEPNLSDSGAADC------- 85
+ HNGEINT+ GN+N+M ARE ++ +++ L P+V SDS D
Sbjct: 224 LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVR 283
Query: 86 -------AVMTMVPEAWQNDGTMPD--EKRDFYNWAACAMEPWDGPALLTFTDGRYIGAI 136
A M +VPEA++N + D E DF+++ + EPWDGPALL F+DG+ +GA
Sbjct: 284 TGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAG 343
Query: 137 LDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANVQLK 174
LDRNGLRP+R+ + KD+ +V+ SE GV D ++ K
Sbjct: 344 LDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEK 381
Score = 175 bits (446), Expect = 3e-44
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KV++ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++SVKLV+E+G+G
Sbjct: 983 KVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIG 1042
Query: 1076 VVASGVAK 1083
+A+GVAK
Sbjct: 1043 TIAAGVAK 1050
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 188 bits (479), Expect = 2e-51
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 1299 GIKTVKVEW-TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPER-YIANELDLTLDPR 1356
G++ V++ DATGR + SE + DLV+ A+GF + +E +L +
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRW 395
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411
+T +T + V+AAGD RG SLVVWAI +GR AA I ++ + P
Sbjct: 396 GTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKAEAP 450
Score = 121 bits (307), Expect = 3e-29
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 1229 KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALN 1288
+D+ EIYA + + QA RC +CGVPFCQ CP+ N IP W L EA
Sbjct: 1 QDFAEIYA-RFSDERANEQANRCSQCGVPFCQV--HCPVSNNIPDWLKLTSEGRLEEAYE 57
Query: 1289 QLLQTNNFPA 1298
TNNFP
Sbjct: 58 VSQATNNFPE 67
Score = 35.2 bits (82), Expect = 0.16
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 11/51 (21%)
Query: 1082 AKSIVSFEILPQPNPKRSQDNPWPQFPRIFKVDYGHEE-VKVKHNHDPREF 1131
A S+ + N P +V + EE V+ P F
Sbjct: 288 ATSVKCLYRRDRKN--------MP--GSQREVAHAEEEGVEFIWQAAPEGF 328
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 100 bits (250), Expect = 3e-21
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 1299 GIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANEL-DLTLDPRS 1357
++ V+ E +D TG+W E + K D+V+ A G + + + L + +
Sbjct: 405 AVQFVRTE--QDETGKWN--EDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWD 460
Query: 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTSTLP 1411
+T T+ P V+A GD + V ++++G+QA+ I ++
Sbjct: 461 LPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGAS 514
Score = 78.3 bits (193), Expect = 1e-14
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 1223 PAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNN 1282
EK ++D+I T +G +A RC++C CQ CP I + I + N
Sbjct: 51 HCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQK--SCPTHLDIKSFITSISNKN 108
Query: 1283 WSEALNQLLQTNNFPA 1298
+ A + N
Sbjct: 109 YYGAAKMIFSDNPLGL 124
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron
transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus}
SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A*
1e1n_A* 1e6e_A*
Length = 460
Score = 79.1 bits (195), Expect = 3e-15
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 1303 VKVEWTK-DATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYST 1361
+++ T+ + G + C LVL ++G+ + + DP+
Sbjct: 295 IRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI----DPSVPFDPKLGVVP 350
Query: 1362 VEKTYLTTVPRVYAAGDCRRGQSLVV-WAISEGRQAAREIDSFLMGTSTLPD 1412
+ + VP +Y +G +RG + V+ +++ + + L LP
Sbjct: 351 NMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDL-KAGHLPS 401
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 65.4 bits (159), Expect = 3e-11
Identities = 67/392 (17%), Positives = 116/392 (29%), Gaps = 86/392 (21%)
Query: 323 VSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIV- 381
+ E A + FR ++Y L G + +SEV+ +
Sbjct: 11 LEACLEGEVAYQKTTTGLEGFR------LRYQALAG----------LALSEVDLTTPFLG 54
Query: 382 KRFAT----GAMSFGSISIEA-HTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA 436
K GAM+ G + E + LA+A +G G R
Sbjct: 55 KTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGS---------------GRIL 99
Query: 437 IK-QVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGL 495
++ A F V + +AQ + G + +
Sbjct: 100 LERPEALRSFRVRKVAPKALLIANLGLAQLRRYGR-------DDLLRLVEMLEADALAFH 152
Query: 496 ISPPPHHDIYSIEDLAELIYDLK-CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS 554
++P D L+ L + VK V A + + ++
Sbjct: 153 VNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVA 212
Query: 555 GHDGGTGASSWTGIKNAGLP--------WELGVAETHQVLALNNLRSRVVLQADGQIRTG 606
G GGT SW ++ E+G+ +L + + + L A G + TG
Sbjct: 213 GA-GGT---SWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTG 268
Query: 607 FDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVI 666
D A LGAD + ++ L + E V
Sbjct: 269 TDGAKALALGADLLAVARPLL----------------------------RPALEGAERVA 300
Query: 667 NYLFMLAEEVRTHMAKLGIRKFADLVGRTDLL 698
++ EE+RT + +G R + GR + +
Sbjct: 301 AWIGDYLEELRTALFAIGARNPKEARGRVERV 332
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 7e-11
Identities = 108/692 (15%), Positives = 179/692 (25%), Gaps = 290/692 (41%)
Query: 765 DLEYTI----NNECRA------FTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAF 814
LE+ + + A F L ++ E + +L G F +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD---EPTTPAELVGK----FLGY 67
Query: 815 LVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGEI-----IIYP 869
+ V + + D V F E N Y L G +I +
Sbjct: 68 VSSLVEPS-KVGQFDQVLNLCLTEF---------E---NCY----LEGNDIHALAAKLLQ 110
Query: 870 PKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMT 929
+T K +I K + + A+ VG+
Sbjct: 111 ENDTTLVKTKELI------------KNYITARIMAKRPFDKKSNSALFRAVGE------- 151
Query: 930 GGCAVILGLTGRNFAAGMSGG----IAYVLDVDGSFAKKCNMEMVEL--LPLELPEDL-D 982
G A ++ + F GG Y + E+ +L L DL
Sbjct: 152 -GNAQLVAI----F-----GGQGNTDDY-FE-----------ELRDLYQTYHVLVGDLIK 189
Query: 983 YVKSLLVEF---HEKTESEIAKNL-LQTW-----PAPAKQFVKVTKDIASTRHSVPGVGL 1033
+ L E E + L + W P K + + S S P +G+
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY------LLSIPISCPLIGV 243
Query: 1034 ISPPPHHDIYSIEDLAELIYDLKCA--NP-NARISVKLVSEVGVGVV-ASGVAKSIVSFE 1089
I LA + K P R +K + G+V A +A++
Sbjct: 244 IQ------------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET----- 286
Query: 1090 ILPQPNPKRSQDNPWPQFPRI--------FKVDY-GHEEVKVKHNHDPREFCILSSTLSS 1140
+ W F F + +E P ++L
Sbjct: 287 ------------DSWESFFVSVRKAITVLFFIGVRCYEAY-------PN------TSLPP 321
Query: 1141 SLQFRDDKTSVVFPYEYQRALKQILAEGVENKEKAIEYTPGFKLSNVKDIEDVMGADKKK 1200
S IL + +EN E P LS + +++
Sbjct: 322 S----------------------ILEDSLENNEG----VPSPMLS-------ISNLTQEQ 348
Query: 1201 VDRSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIY----ATQHVRKG-----------LR 1245
V ++KT + PA K++ EI A V G LR
Sbjct: 349 VQDYVNKTNS----------HLPAGKQV----EISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 1246 IQAAR--CMECGVPFCQ------------SS--HGCPL--------------GNIIPKWN 1275
A + +PF + +S H L N+
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAK 453
Query: 1276 DL---IYH-NNWSE--ALNQLLQTNNFPAGIKTVKVEWTK----DAT------------- 1312
D+ +Y + S+ L+ + I + V+W AT
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 1313 ---------GRW-------KMDEVPNSEKIFK 1328
G +D P+ + FK
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 63.5 bits (154), Expect = 5e-10
Identities = 105/667 (15%), Positives = 181/667 (27%), Gaps = 253/667 (37%)
Query: 288 RHF-LSYSERTADMLVLRNPGYYHWRA---------------GGEKHINDPVSIANL--- 328
R LS+ +LV P + A G ++P + A L
Sbjct: 7 RPLTLSHGSLEHVLLV---PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 329 -----QEAASNNNKNAYDRFRESNMESVKYSTLRGQLD---FVTHDKPVDISEVEPAAEI 380
+ +D+ + + L G D + + + E+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKTKEL 122
Query: 381 VKRFATGAMSFGSISIEAHTT--LAKAMNKIGAKSNT---GEGGENPERYLSSGDENQ-- 433
+K + T A + + L +A+ + A+ G+G N + Y +E +
Sbjct: 123 IKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG--NTDDYF---EELRDL 176
Query: 434 ----RSAIKQVASGRFGVTSSYLAHADDLQIKMAQG-----------AKPGEGGELPGYK 478
+ + S + D + QG P + Y
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-----Y- 230
Query: 479 VTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCA--NP-NARISVKLVSEVG 535
+ S S P +G+I LA + K P R +K +
Sbjct: 231 ----LLSIPISCPLIGVIQ------------LAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 536 VGVV-ASGVAKGKAE---------------HIVISGH-----------------DGGTGA 562
G+V A +A+ + I + + + G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 563 SSW----TGIK-----------NAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGF 607
S + + N+ LP A ++L N +V+ +G
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLP-----AGKQVEISLVNGAKNLVV-------SGP 382
Query: 608 DVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG-KPEHVI 666
+L GL +RK P G+ Q R F+ K +
Sbjct: 383 ---PQSL-----YGL---------NLTLRKAK---APSGL-DQS---RIPFSERKLKFSN 418
Query: 667 NYL-----FMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNA 721
+L F H + LL P N N +F
Sbjct: 419 RFLPVASPF--------H---------------SHLLVPASDLINKDLVKNNVSF-NAKD 454
Query: 722 LHMRP------GVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECR 775
+ + P G ++R S + + +R+ + +I PV E T
Sbjct: 455 IQI-PVYDTFDGSDLRVLSGS----ISERIVDCII--RLPV--------KWETTTQ---- 495
Query: 776 AFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFLV------RGVHV----TLEG 825
F AT HI ++ G G S L GV V TL+
Sbjct: 496 -FKAT---HI-------------LDF---GPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 826 DANDYVG 832
+ +D G
Sbjct: 536 NPDDDYG 542
Score = 57.8 bits (139), Expect = 3e-08
Identities = 99/616 (16%), Positives = 175/616 (28%), Gaps = 200/616 (32%)
Query: 422 PERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELP------ 475
P ++ DE + + V +F Y++ + P + G+
Sbjct: 44 PTEGFAADDE-PTTPAELVG--KF---LGYVSSLVE----------PSKVGQFDQVLNLC 87
Query: 476 ------GYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELI--YDLKCANPNARIS 527
Y DI H+ L + + ++ ELI Y
Sbjct: 88 LTEFENCYLEGNDI----HA-----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 528 VKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-EL-GVAETHQV 585
K S + V +G A+ + I G G G N + EL + +T+ V
Sbjct: 139 KKSNSAL-----FRAVGEGNAQLVAIFG---GQG--------NTDDYFEELRDLYQTYHV 182
Query: 586 L----------ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG----LSTA----PL 627
L L+ L R L A+ G +++ L L + PL
Sbjct: 183 LVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNIL-EWLENPSNTPDKDYLLSIPISCPL 240
Query: 628 ITMGCTMMRKCH-LNTCPV-GIATQDP-ELRKKFAGKPEHVINYLFMLAEEVRTHMAKLG 684
I G + H + T + G P ELR G H + +A
Sbjct: 241 I--GVIQL--AHYVVTAKLLGF---TPGELRSYLKGATGHSQGLVTAVA----IAETD-S 288
Query: 685 IRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKR 744
F V K + F + G +
Sbjct: 289 WESFFVSV----------------RKAITVLFFI--------------GVRCYEAYPNTS 318
Query: 745 LDNTLIQECE--------PVLS--GKVPRIDLEYTINNECRAFTATL--SYHISIKTKEE 792
L +++++ P+LS + + ++ + + L + I
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYV----NKTNSHLPAGKQVEI----- 368
Query: 793 GL---PENSINLKLTGSAGQSFCAF--LVRGVHVTLEGDANDYVGKESFCA--------F 839
L +N + ++G QS +R D + + F F
Sbjct: 369 SLVNGAKNLV---VSGPP-QSLYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRF 420
Query: 840 LVRGV--HVTLEGDANDYVGKGLSGGEIIIYP-----PKTSTFESDKNVIVG-NVCLYGA 891
L H L A+D + K L + P TF+ G ++ +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-------GSDLRVLSG 473
Query: 892 TSGKAFFRGIAAERFSVR-----NSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAG 946
+ + I V+ A ++ D G GG + + LT RN G
Sbjct: 474 SISERIVDCIIRLP--VKWETTTQFKATHIL----DFG----PGGASGLGVLTHRN-KDG 522
Query: 947 MSGGIAYVL--DVDGS 960
G+ ++ +D +
Sbjct: 523 T--GVRVIVAGTLDIN 536
Score = 50.4 bits (120), Expect = 5e-06
Identities = 96/671 (14%), Positives = 177/671 (26%), Gaps = 253/671 (37%)
Query: 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPV---GI 647
R + L G + V TA + +++ P G
Sbjct: 6 TRP-LTLS-HGSLEHVLLV-------------PTASFFI--ASQLQEQFNKILPEPTEGF 48
Query: 648 ATQD-----PELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702
A D EL KF G +V + + + L + +F L+ +
Sbjct: 49 AADDEPTTPAELVGKFLG---YVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGND 100
Query: 703 V-------GANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEP 755
+ ++ L+KN + R +K+ ++ L +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITAR---------IMAKRPFDKKSNSALFRAVG- 150
Query: 756 VLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLTGSAGQSFCAFL 815
G ++ I F G GQ
Sbjct: 151 --EGNA-QL---VAI------F---------------------------G--GQ------ 163
Query: 816 VRGVHVTLEGDANDYVGKE---------SFCAFLVRGVHVTLEG------DANDYVGKGL 860
G+ +DY +E L++ TL DA +GL
Sbjct: 164 ---------GNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 861 SGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGV 920
+ E + P T K + I S G + +
Sbjct: 214 NILEWLENP--------------------SNTPDKDYLLSIP---ISCPLIGVIQL---- 246
Query: 921 GDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDV-----------DGSFAKKCNMEM 969
Y+ A +LG T + + G + + SF +
Sbjct: 247 ----AHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVRKA 299
Query: 970 VELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKDIASTRHSVP 1029
+ +L F + +P + + +D VP
Sbjct: 300 ITVL-----------------FFIGVRC------YEAYPNTSLPP-SILEDSLENNEGVP 335
Query: 1030 GVGLISPPPHHDIYSIEDL--AELIYDLKCAN----PNARISVKLVSEVGVG---VVASG 1080
SP + SI +L ++ + N ++ + LV+ G +V SG
Sbjct: 336 -----SP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN----GAKNLVVSG 381
Query: 1081 VAKSIVSFEI-LPQPNPKRSQDNPWPQFPRIFKVDYGHEEVKVKHNHDPREFCILSSTLS 1139
+S+ + L R K G ++ ++ R+ L
Sbjct: 382 PPQSLYGLNLTL-----------------RKAKAPSGLDQSRIP--FSERK-------LK 415
Query: 1140 SSLQFRDDKTSVVF--PYEYQRALKQILAEGVENKEKAIEYTPG-FKLSNVKDIEDVMGA 1196
S +F + F A I + V+N + + ++ V D D G+
Sbjct: 416 FSNRF--LPVASPFHSHL-LVPASDLINKDLVKNN---VSFNAKDIQIP-VYDTFD--GS 466
Query: 1197 DKKKVDRSIDK 1207
D + + SI +
Sbjct: 467 DLRVLSGSISE 477
Score = 50.0 bits (119), Expect = 6e-06
Identities = 90/528 (17%), Positives = 152/528 (28%), Gaps = 164/528 (31%)
Query: 96 QNDGTMPDEK---RDFYNWAACAMEPWDGP---ALLTFTDGRYIGAILDRNGLRPSRFYV 149
+ND T+ K +++ A P+D AL A+ + N ++
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--------AVGEGN----AQLVA 158
Query: 150 --------------LKDNVMVMASEVGVYDTDPANVQ-LKIPMDASLKCLILVHREVHHM 194
L+D +Y T V L +L LI R
Sbjct: 159 IFGGQGNTDDYFEELRD----------LYQTYHVLVGDLIKFSAETLSELI---RTTLDA 205
Query: 195 CVLLGYGADAI-----------CPYLVFEMAKSLRAEGNYCDAMERGISKVMAKMGISTL 243
+ G + + YL L IS + +G+ L
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYL-------LSIP----------ISCPL--IGVIQL 246
Query: 244 QSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGI-TFEVLAQEAYDRHFLSYSERTADMLV 302
Y + +G + KG G+ T +A+ F + +L
Sbjct: 247 AHY--VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 303 LRNPGYYHWRAGGEKHINDP---VSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQ 359
+ G + P + + L+++ NN S M S+ + + Q
Sbjct: 305 --------F-IGVRCYEAYPNTSLPPSILEDSLENNEGVP------SPMLSIS-NLTQEQ 348
Query: 360 L-DFVTH-------DKPVDISEV-EPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIG 410
+ D+V K V+IS V +V +G S+ L + K
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVV----SGP----PQSLYG---LNLTLRKAK 397
Query: 411 AKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFG-VT----SSYLAHADDLQIK-MAQ 464
A S G + R S +R K S RF V S L A DL K + +
Sbjct: 398 APS-----GLDQSRIPFS----ER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 465 GAKPGEGGEL--PGYKVT--KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKC- 519
++ P Y D+ S+ E + + I L
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSI----------------SERIVDCIIRLPVK 489
Query: 520 --ANPNARISVKLV----SEVGVGVVASGVAKGKAEHIVISGH-DGGT 560
+ + L G+GV+ G ++++G D
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 45.8 bits (108), Expect = 1e-04
Identities = 66/336 (19%), Positives = 105/336 (31%), Gaps = 119/336 (35%)
Query: 96 QNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAILD--RNGLRPSRFYV---- 149
Q G M D Y + A + W+ A F D Y +ILD N P +
Sbjct: 1627 QEQG-M---GMDLYKTSKAAQDVWNR-ADNHFKD-TYGFSILDIVINN--PVNLTIHFGG 1678
Query: 150 -----LKDNVMVMASEVGVYDTDPANVQLKIPMDASLKCLILVHREVHHMCVLLGYGAD- 203
+++N M +++T D LK + +E++ + ++
Sbjct: 1679 EKGKRIRENYSAM-----IFETIV---------DGKLKTE-KIFKEINEHSTSYTFRSEK 1723
Query: 204 -----------AICPYLVFEMA--KSLRAEGNY-CDAMERGISKVMAKMG-----ISTLQ 244
A+ + E A + L+++G DA A G + L
Sbjct: 1724 GLLSATQFTQPAL---TLMEKAAFEDLKSKGLIPADA-------TFA--GHSLGEYAALA 1771
Query: 245 SYKGAQIFE-AVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSERTADMLVL 303
S E V + V F R G+ Q A R L S M+ +
Sbjct: 1772 SLADVMSIESLVEV---V----FY----R--GM----TMQVAVPRDELGRSN--YGMIAI 1812
Query: 304 RNPGYYHWRAGGE----------KHINDPVSIANL-----QEAASNNNKNAYDRFRESNM 348
NPG E K V I N Q A+ + + A D
Sbjct: 1813 -NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR-ALD------- 1863
Query: 349 ESVKYSTLRGQLDFVTHDKPVDISE--VEPAAEIVK 382
T+ L+F+ + +DI E + E V+
Sbjct: 1864 ------TVTNVLNFI-KLQKIDIIELQKSLSLEEVE 1892
Score = 45.0 bits (106), Expect = 2e-04
Identities = 59/364 (16%), Positives = 107/364 (29%), Gaps = 144/364 (39%)
Query: 199 GYGADAICPYLVFEMAKSL--RAEGNYCDAMERGISKVM------------AKMGISTLQ 244
G G D Y + A+ + RA+ ++ D I ++ + G +
Sbjct: 1630 GMGMDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 245 SYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSERT--ADMLV 302
+Y A IFE + + K FK TF ++ LS ++ T A + +
Sbjct: 1687 NY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFR------SEKGLLSATQFTQPA-LTL 1738
Query: 303 LRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFR-----ESNMESVKYSTLR 357
+ A ++ S A F E Y+ L
Sbjct: 1739 --------------------MEKAAFEDLKSKGLIPADATFAGHSLGE-------YAAL- 1770
Query: 358 GQLDFVTHDKPVDISEV---EPAAEIV-KRFATGAMSFGSISIEAHTTLAKAMNKI-GAK 412
+++V E E+V R G T+ A+ + +
Sbjct: 1771 -----------ASLADVMSIESLVEVVFYR--------GM-------TMQVAVPRDELGR 1804
Query: 413 SNTGEGGENPER-YLSSGDENQRSAIKQVA--SGRFGVTSSYLAHADDLQIKMAQGA--- 466
SN G NP R S E + +++V +G ++I
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL------------VEI-----VNYN 1847
Query: 467 KPGE----GGELPG----------YKVTK-DIASTRHSVPGVGLISPPPHHDIYSIEDLA 511
+ G+L K+ K DI + S+ S+E++
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL---------------SLEEVE 1892
Query: 512 ELIY 515
++
Sbjct: 1893 GHLF 1896
Score = 43.5 bits (102), Expect = 6e-04
Identities = 59/368 (16%), Positives = 103/368 (27%), Gaps = 122/368 (33%)
Query: 646 GIATQDP----ELRKKFAGKPEHVINYLFMLAEEVRTHM-AKLGIRKFADLVGRTDLLKP 700
G Q+ +L K ++ A+ H G D+V
Sbjct: 1625 GS--QEQGMGMDLYKTSK-----AAQDVWNRADN---HFKDTYGFS-ILDIV-------- 1665
Query: 701 REVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEPVLSGK 760
NP ++F + +R + D +L+ I E + +
Sbjct: 1666 IN---NPVNLTIHFG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 761 VPRIDLEYTINNECRAFT----ATLSYHISIKTKEEGL-PENSINLKLTGSAGQS---FC 812
+ L T FT + K +GL P ++ AG S +
Sbjct: 1721 SEKGLLSAT------QFTQPALTLMEKAAFEDLKSKGLIPADAT------FAGHSLGEYA 1768
Query: 813 AFLVR--GVHVTLEGDANDYVGKESFCAFLV--RG--VHVTLEGDANDYVGKGLSGGEII 866
A L V +++E +V RG + V + D G S +I
Sbjct: 1769 A-LASLADV-MSIE-SL----------VEVVFYRGMTMQVAVPRDEL-----GRSNYGMI 1810
Query: 867 IYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCE 926
P G V + E VVE VG
Sbjct: 1811 AINP-------------GRVAA-----------SFSQEALQ-------YVVERVGKR--- 1836
Query: 927 YMTGG-CAVILGLTGRNF-AAGM----SGGIAYVLDVDGSFAKKCNMEMVELLPLELPED 980
TG ++ N+ +G + LD + ++ ++++ L+
Sbjct: 1837 --TGWLVEIV------NYNVENQQYVAAGDLR-ALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 981 LDYVKSLL 988
L+ V+ L
Sbjct: 1888 LEEVEGHL 1895
Score = 41.2 bits (96), Expect = 0.003
Identities = 57/355 (16%), Positives = 93/355 (26%), Gaps = 167/355 (47%)
Query: 248 GAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDR---HFLS-YSERTADMLVL 303
G+Q G+ ++ T + AQ+ ++R HF Y D+ V+
Sbjct: 1625 GSQ---EQGMGMDLYK-------------TSKA-AQDVWNRADNHFKDTYGFSILDI-VI 1666
Query: 304 RNPGYYHWRAGGE--KHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLD 361
NP GGE K I RE N ++ + T+ +D
Sbjct: 1667 NNPVNLTIHFGGEKGKRI------------------------RE-NYSAMIFETI---VD 1698
Query: 362 FVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGEN 421
+ + E + +F +
Sbjct: 1699 GKLKTEKIFKEINEHSTSY---------TF----------------------------RS 1721
Query: 422 PERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGE----GGELPGY 477
+ LS+ + Q A A D +K ++G P + G
Sbjct: 1722 EKGLLSA-TQFT-----QPAL----TLMEKAAFED---LK-SKGLIPADATFAG------ 1761
Query: 478 KVTKDIASTRHSVPGVG----LISPPPHHDIYSIEDLAELI------------------- 514
HS+ G L S D+ SIE L E++
Sbjct: 1762 ----------HSL---GEYAALASLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 515 -YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEH------------IVISGH 556
Y + NP R++ E + V V K V +G
Sbjct: 1806 NYGMIAINPG-RVAASFSQEA-LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 1e-09
Identities = 58/509 (11%), Positives = 142/509 (27%), Gaps = 135/509 (26%)
Query: 955 LDVDGSFAKKCNMEMVELLPLELPEDLDY---------------VKSLLVEFHEKT---- 995
+D + + +++ + ++ D + +++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 996 -----------------ESEIAKN---LLQTWPAPAKQFVKVTKDIASTRHSVPGVGLIS 1035
E + N L+ +Q +T+ R + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 1036 PPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKSIVSFEILPQPN 1095
+++ ++ +L L P + + GV G K+ V+ ++
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLI-----DGVL----GSGKTWVALDVCLSYK 175
Query: 1096 PKRSQDNPWPQFPRIFKVDYGH----EEV-----KVKHNHDPREFCIL---SSTLSSSLQ 1143
+ D +IF ++ + E V K+ + DP + SS + +
Sbjct: 176 VQCKMDF------KIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIH 228
Query: 1144 FRDDKTSVVFPYE-YQRALKQILAEGVENKEKAIEYTPGFKL-------SNVKDIEDVMG 1195
+ + + Y+ L +L V+N KA F L + K + D +
Sbjct: 229 SIQAELRRLLKSKPYENCL-LVLLN-VQNA-KAWNA---FNLSCKILLTTRFKQVTDFLS 282
Query: 1196 ADKKKVDRSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECG 1255
A + E + L + + + L +
Sbjct: 283 AATTTHISLDHHSMTLTP--DEV------KSLLLKYLDCRP-----QDLPREV-----LT 324
Query: 1256 V-PFCQSSHGCPLGNIIPKWNDLIYHNNW------SEALNQLLQTNN---------FPAG 1299
P S + + + W++ + N +LN L FP
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 1300 IK----TVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLD- 1354
+ + W D + + + L ++ P+ + + L+
Sbjct: 385 AHIPTILLSLIWF---------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 1355 --PRSNYSTVEKTYLT--TVPRVYAAGDC 1379
N + ++ + +P+ + + D
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Score = 52.5 bits (125), Expect = 1e-06
Identities = 84/560 (15%), Positives = 160/560 (28%), Gaps = 164/560 (29%)
Query: 884 GNVCLYG-ATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMT-GGC----AVILG 937
NV + G SGK + +A + + V+ D ++ C V+
Sbjct: 151 KNVLIDGVLGSGKTW---VALD--VCLSYK----VQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 938 LTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYVKSLLVEFHEKTES 997
L + + D S K + ++ L + Y LLV
Sbjct: 202 LQ--KLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------- 249
Query: 998 EIAKNLLQTW-PAPAKQF---VKV---TKDIASTRH-SVPGVGLISPPPHHDIYSIEDLA 1049
LL F K+ T+ T S IS H + +++
Sbjct: 250 -----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 1050 ELIYDLKCANPNARISVKLVSEVGVGV---VASGVAKSIVSFEILPQPNPKRSQDNPWPQ 1106
L+ LK + + + + S +A+SI + W
Sbjct: 305 SLL--LKYLD----CRPQDLPREVLTTNPRRLSIIAESI-------RDGLAT-----WDN 346
Query: 1107 FPRIFKVDYGHEEVKVKHNHDPREFCILSSTLSSSLQFRDDKTSVVFPYEYQRALKQ--I 1164
+ + N D L++ + SSL + P EY++ + +
Sbjct: 347 WKHV--------------NCDK-----LTTIIESSLNVLE-------PAEYRKMFDRLSV 380
Query: 1165 LAEGVENKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRS-IDKTRGFIKYSRETAPYRP 1223
+ + DVM K S ++K K S + P
Sbjct: 381 FPPSAHIPTILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQP---KESTISIPSIY 432
Query: 1224 AEKRLKDWDEIYATQHVRKGL-RIQAARCMECGVPFCQSSHGCPLGNIIPKWND------ 1276
E ++K +E H R + + F ++IP + D
Sbjct: 433 LELKVKLENE--YALH-RSIVDHYNIPKT------FDSD-------DLIPPYLDQYFYSH 476
Query: 1277 LIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAM 1336
+ +H + + + F D R+ ++ +KI A
Sbjct: 477 IGHH---LKNIEHPERMTLFR--------MVFLDF--RF-LE-----QKIRHDSTAWNAS 517
Query: 1337 GFLGP--------ERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ--SLV 1386
G + + YI + DP+ Y + L +P+ + + L+
Sbjct: 518 GSILNTLQQLKFYKPYICDN-----DPK--YERLVNAILDFLPK--IEENLICSKYTDLL 568
Query: 1387 VWAIS---EG--RQAAREID 1401
A+ E +A +++
Sbjct: 569 RIALMAEDEAIFEEAHKQVQ 588
Score = 50.2 bits (119), Expect = 5e-06
Identities = 98/707 (13%), Positives = 195/707 (27%), Gaps = 220/707 (31%)
Query: 188 HREVHHMCVLLGYGADAICPYLVFEMAKSLRAEGNYCDAMERGISKVMAKMGISTLQSYK 247
H HHM D FE E Y + I V +
Sbjct: 1 HHHHHHM--------D-------FETG-----EHQYQY---KDILSVFEDAFVDNFDCKD 37
Query: 248 GAQIFEAVGLAEEVINKCFKGTPSRLGGI--TFEVLAQEAYDRHFLSYSERTADMLV--- 302
+ +++ L++E I+ + + G F L LS E V
Sbjct: 38 VQDMPKSI-LSKEEIDHIIM-SKDAVSGTLRLFWTL---------LSKQEEMVQKFVEEV 86
Query: 303 LR-NPGYYHWRAGG-EKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVK-YSTLRGQ 359
LR N Y + + P + + + N F + N+ ++ Y LR
Sbjct: 87 LRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 360 LDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGG 419
L E+ PA ++ G + G T +A +
Sbjct: 144 L-----------LELRPAKNVL---IDGVLGSGK------TWVALD-----VCLSYKVQC 178
Query: 420 ENPER--YLSSGDENQ-RSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPG 476
+ + +L+ + N + ++ + + + ++ + +D
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----------------N 222
Query: 477 YKVTKDIASTRHSVPGVGLISPPPHH-------DIYSIEDLAELIYDLKCANPNARISVK 529
K+ L+ P+ ++ + + ++L C +I
Sbjct: 223 IKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNA--FNLSC-----KI--- 268
Query: 530 LVSEVGVGVVASGVAKGKAEHIVISGHDGG-TGA------SSWTGIKNAGLP-------- 574
L++ V ++ HI + H T + + LP
Sbjct: 269 LLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 575 ----------------WE----LGVAETHQVL--ALNNL-----RSR----VVLQADGQI 603
W+ + + ++ +LN L R V I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 604 RTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCP----VGI----------AT 649
T + +L+ D I + ++ + + + + P + I
Sbjct: 388 PTI----LLSLIWFDVI--KSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 650 QDPELRKKFAGK-------------PEHVINYLFM-LAEEVRTHMAKLGIRKFADLVGRT 695
+ L + P ++ Y + + H+ + R
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKN------IEHPERM 490
Query: 696 DLLKPREVGANPKAKMLNFAFLLKNALHMRPGVNIRAGSETQDHQLEKRLDNTLIQECEP 755
L R V L+F FL + H N QL+ I + +P
Sbjct: 491 TLF--RMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDP 539
Query: 756 VLSGKVPRIDLEYTINNE----CRAFTATLSYHISIKTKEEGLPENS 798
V I L++ E C +T L I++ ++E + E +
Sbjct: 540 KYERLVNAI-LDFLPKIEENLICSKYTDLL--RIALMAEDEAIFEEA 583
Score = 46.8 bits (110), Expect = 5e-05
Identities = 50/401 (12%), Positives = 110/401 (27%), Gaps = 109/401 (27%)
Query: 55 EGVMKSPHIPDIKQLYPVVEPNLSDSGAADCAVMTMVPEAWQNDGTMPDEKRDFYNWAAC 114
+ ++ S + + L V V E + + Y +
Sbjct: 52 DHIIMSKD--AVSGTLRLFW-TLLSKQEE--MVQKFVEEVLRIN----------YKFL-- 94
Query: 115 AMEPW----DGPALLTFTDGRYIGAILDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPAN 170
M P P+++T YI R+ R Y DN + N
Sbjct: 95 -MSPIKTEQRQPSMMT---RMYIEQ---RD-----RLY--NDNQVF----------AKYN 130
Query: 171 VQLKIPMDASLKCLILVHRE----VHHMCVLLGYGADAICPYLVFEMAKSLRAEGNYCDA 226
V P + L+ + + + LG G + ++ S + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTW----VALDVCLSYKVQ----CK 179
Query: 227 MERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAY 286
M+ I + + + E + I+ + I + + +A
Sbjct: 180 MDFKIFWL--NLK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 287 DRHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYD----- 341
R L +LVL N + + + NA++
Sbjct: 234 LRRLLKSKPYENCLLVLLN-------------VQNAKAW------------NAFNLSCKI 268
Query: 342 ----RFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIE 397
RF+ + + + + H + EV+ ++ ++ + E
Sbjct: 269 LLTTRFK-QVTDFLS-AATTTHISLDHHSMTLTPDEVK---SLLLKYLD--CRPQDLPRE 321
Query: 398 AHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIK 438
TT + ++ I +G + + + + I+
Sbjct: 322 VLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIE 360
Score = 37.5 bits (86), Expect = 0.038
Identities = 46/302 (15%), Positives = 85/302 (28%), Gaps = 84/302 (27%)
Query: 547 KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRS-RVVLQADGQIRT 605
A++++I G G+G K +AL+ S +V + D +I
Sbjct: 149 PAKNVLIDG-VLGSG-------K--------------TWVALDVCLSYKVQCKMDFKI-- 184
Query: 606 GFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHV 665
F + + C+ P + +L + P
Sbjct: 185 -F-------------------WLNLK-----NCN---SPETVLEMLQKLLYQI--DPNWT 214
Query: 666 INYLFMLAEEVRTHMAKLGIRK-FADLVGRTDLL------KPREVGA-NPKAKML----- 712
++R H + +R+ LL + A N K+L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 713 -NFAFLLKNALHMRPGVNIRAGSETQDHQLE---KRLDNTLIQECEPVLSGKV-PR-IDL 766
L A ++ + + T D K LD + P PR + +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSI 332
Query: 767 EYTINNECRAFTATLSY--HISIKTKEEGLPENSINLKLTGSAGQSF--CAFLVRGVHVT 822
I R AT H++ + E+S+N+ + F + H+
Sbjct: 333 ---IAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 823 LE 824
Sbjct: 389 TI 390
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 57.9 bits (140), Expect = 2e-08
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 7/123 (5%)
Query: 1298 AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRS 1357
I + E D +GR + + LV+ ++G+ G L D +S
Sbjct: 285 ERIVLGRNELVSDGSGRVAAKD-TGEREELPAQLVVRSVGYRGVPT-----PGLPFDDQS 338
Query: 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVV-WAISEGRQAAREIDSFLMGTSTLPDVGGV 1416
+ P Y G +RG + V+ + + + L +
Sbjct: 339 GTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSF 398
Query: 1417 ITP 1419
Sbjct: 399 PED 401
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 54.4 bits (131), Expect = 1e-07
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 40/171 (23%)
Query: 530 LVSEVGVGVVASGVAKGK---AEHIVISGHDGGTGASSWTGIKN------AGLPWELGVA 580
+V EVG G+ + K A + I G+ GGT +++ I+N G++
Sbjct: 182 IVKEVGFGMSKASAGKLYEAGAAAVDIGGY-GGT---NFSKIENLRRQRQISFFNSWGIS 237
Query: 581 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHL 640
+ + + + A G ++ DV A LGA
Sbjct: 238 TAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASC--------------------- 276
Query: 641 NTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
G+A L+ E ++ + ++ EE++ M LG R ADL
Sbjct: 277 ----TGMAG--HFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADL 321
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 54.0 bits (130), Expect = 2e-07
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 39/170 (22%)
Query: 530 LVSEVGVGVVASGVAKGK---AEHIVISGHDGGTGASSWTGIKNAGLP-----WELGVAE 581
++ EVG G+ + + + ISG GGT S+ I+N + G
Sbjct: 210 ILKEVGFGMDVKTIQTAIDLGVKTVDISGR-GGT---SFAYIENRRGGNRSYLNQWGQTT 265
Query: 582 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLN 641
+L L +V + A G IR D++ A +LGA
Sbjct: 266 AQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKA---------------------- 303
Query: 642 TCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
VG++ L VI + E++R M L + A+L
Sbjct: 304 ---VGLSR--TMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAEL 348
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 52.5 bits (126), Expect = 5e-07
Identities = 57/405 (14%), Positives = 105/405 (25%), Gaps = 96/405 (23%)
Query: 323 VSIANLQEAASNNNKNAYDRFR-------ESNMESVKYST-LRGQLDFVTHDKPVDISEV 374
V IA + ++ + + + T + PV ++
Sbjct: 12 VEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRK----EISVPVMVT-- 65
Query: 375 EPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIG---AKSNTGEGGENPERYLSSGDE 431
I +A+ K G + E E S
Sbjct: 66 ----------GMTGGRNELGRINKI--IAEVAEKFGIPMGVGSQRVAIEKAE-ARESFAI 112
Query: 432 NQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVP 491
++ A G+ + Q + A H P
Sbjct: 113 VRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEAD--------------AIAVHLNP 158
Query: 492 GVGLISPPPHHD--IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAE 549
+ P + IY++E L ++ + I VK A + +
Sbjct: 159 AQEVFQPEGEPEYQIYALEKLRDI-----SKELSVPIIVKESGNGISMETAKLLYSYGIK 213
Query: 550 HIVISGHDGGTGASSWTGIKN-------------AGLPWELGVAETHQVLALNNLRSRVV 596
+ SG GGT +W I+ A + GV ++ +
Sbjct: 214 NFDTSGQ-GGT---NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSF 269
Query: 597 LQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK 656
L G IR+G D A LGAD G++ P++ K
Sbjct: 270 LVGSGGIRSGLDAAKAIALGADIAGMA-LPVL---------------------------K 301
Query: 657 KFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPR 701
E + + + E++ M G + L + ++ +
Sbjct: 302 SAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGK 346
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 51.0 bits (123), Expect = 1e-06
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLM 1405
+ P + + TT ++A GD R V A+ +G A ++
Sbjct: 236 CAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSIL 292
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 45.4 bits (108), Expect = 1e-04
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPER--YIAN---EL 1349
+G ++E + + + PN E + D V L +G A L
Sbjct: 271 EIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG-----EQPRSAELAKIL 325
Query: 1350 DLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
L L P+ V + T+VP VYA GD G + A G AAR +
Sbjct: 326 GLDLGPK-GEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNV 375
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: MSE
FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 43.3 bits (103), Expect = 4e-04
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 1345 IANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCR-RGQSLVVWAISEGRQAAREIDSF 1403
+L L ++ T+ +Y AG+ +G S ++ A S+G +AA I+S
Sbjct: 240 FIEQLGCELQSN-GTFVIDDFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSD 298
Query: 1404 L 1404
+
Sbjct: 299 I 299
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 42.9 bits (101), Expect = 6e-04
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 1330 DLVLLAMGFLGPERYIANELDLTLD--PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVV 1387
+LA GF + I +L +T + + T P ++ G + +
Sbjct: 262 HEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDES----TRYPNIFMIGATVENDNAKL 317
Query: 1388 WAISEGRQAAREIDSFLMGTSTLPDVGGVITPYQSTG 1424
I + R + L LP VI YQ
Sbjct: 318 CYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQ 354
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin adenine
dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 42.6 bits (101), Expect = 0.001
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1322 NSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
S + + D+++LA+G PE +A L L R V + + T+ P +YA GD
Sbjct: 264 KSGSVIQTDMLILAIGVQ-PESSLAKGAGLALGVRGTI-KVNEKFQTSDPHIYAIGDA 319
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 41.8 bits (99), Expect = 0.001
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 1285 EALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------ 1338
A + F A + + +D + + VL A G
Sbjct: 220 YAEKTFNEEFYFDAKARVISTIEKED-AVEVIYFDKSGQKTTESFQYVLAATGRKANVDK 278
Query: 1339 LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAR 1398
LG E + LD +++ E T T+V ++ AGD +L+ A +G+ A
Sbjct: 279 LGLE-----NTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGT 333
Query: 1399 EI 1400
Sbjct: 334 NA 335
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 42.2 bits (100), Expect = 0.001
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
++ ++ + DL+++A+G PE +A + L + V T+ P +YA GD
Sbjct: 247 TLSNGELLETDLLIMAIGVR-PETQLARDAGLAIGELGGI-KVNAMMQTSDPAIYAVGDA 304
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 41.7 bits (99), Expect = 0.002
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 1322 NSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
S K+ D+++ +G P ++ LD + V + T VP +YA GD
Sbjct: 223 KSGKVEHYDMIIEGVGTH-PNSKFIESSNIKLDRKGFIP-VNDKFETNVPNIYAIGDI 278
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 41.4 bits (98), Expect = 0.002
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
V ++ DLV+LA G P +A + L LDPR V+ T+ P ++A GDC
Sbjct: 238 VITDKRTLDADLVILAAGVS-PNTQLARDAGLELDPRGAII-VDTRMRTSDPDIFAGGDC 295
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 41.5 bits (98), Expect = 0.002
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 1324 EKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ 1383
E+ +CD V++ L P + +L V + + V GD
Sbjct: 608 ERELECDAVVMVTARL-PREELYLDL------------VARRDAGEIASVRGIGDAWAP- 653
Query: 1384 SLVVWAISEGRQAAREIDSFLMGTSTLP 1411
+ A+ GR+AA E D+ L +P
Sbjct: 654 GTIAAAVWSGRRAAEEFDAVLPSNDEVP 681
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 40.9 bits (97), Expect = 0.003
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
V +K +LV+LA G P +A +L + + + T+V VYAAGD
Sbjct: 224 VVTDAGEYKAELVILATGIK-PNIELAKQLGVRIGETGAIW-TNEKMQTSVENVYAAGDV 281
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin
adenine dinucleotide, selenomethionine, F flavoprotein;
HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A*
3cgd_A* 3cge_A*
Length = 480
Score = 41.0 bits (97), Expect = 0.003
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
V + +K DLVL+++G P ++ + + V T V VYAAGDC
Sbjct: 262 VETDKGTYKADLVLVSVGVK-PNTDFLEGTNIRTNHKGAIE-VNAYMQTNVQDVYAAGDC 319
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD,
mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 39.5 bits (93), Expect = 0.007
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 1284 SEALNQLLQTN--NFPAGIKTVKVEWTKDATGRWKM---DEVPNSEKIFKCDLVLLAMG- 1337
S + + ++++ F G ++ K T + ++ D E D VL A+G
Sbjct: 228 SSLVTEHMESHGTQFLKGCVPSHIK--KLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285
Query: 1338 -----FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL---VVWA 1389
L E + ++ +P++ V+ T+VP +YA GD G+ A
Sbjct: 286 VPETRTLNLE-----KAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPT--A 338
Query: 1390 ISEGRQAAR 1398
I G+ A+
Sbjct: 339 IKAGKLLAQ 347
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD,
flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Length = 360
Score = 39.2 bits (92), Expect = 0.008
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 1322 NSEKIFKCDLVLLAMGF---LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGD 1378
S+ + D +L+ +GF LGP +A DL L N V+ T+V +YAAGD
Sbjct: 245 GSKWTVEADRLLILIGFKSNLGP---LAR-WDLELY--ENALVVDSHMKTSVDGLYAAGD 298
Query: 1379 CR 1380
Sbjct: 299 IA 300
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Length = 499
Score = 39.5 bits (93), Expect = 0.008
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 1324 EKIFKCDLVLLAMGFLGPERYIAN----ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+ + L+ +G + + + + L NY TV++ T +YAAGDC
Sbjct: 263 GRTVEGSHALMTIGSVP---NTSGLGLERVGIQLGRG-NYLTVDRVSRTLATGIYAAGDC 318
Query: 1380 RRGQSLVVWAISEGRQAAREI 1400
L A +GR A
Sbjct: 319 TGLLPLASVAAMQGRIAMYHA 339
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 38.7 bits (91), Expect = 0.010
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 1322 NSEKIFKCDLVLLAMGF---LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGD 1378
E + D VL+ G+ LGP +AN L L+ N V+ T T++P VYA GD
Sbjct: 234 QEELALEVDAVLILAGYITKLGP---LAN-WGLALE--KNKIKVDTTMATSIPGVYACGD 287
Query: 1379 C 1379
Sbjct: 288 I 288
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 39.1 bits (92), Expect = 0.011
Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPER--YIANELD-- 1350
N +V+ KD S+K + V+LA G R I
Sbjct: 227 NIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAG-----RRPVIPEGAREI 281
Query: 1351 -LTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
L++ V++T T +P V+A GD A+ AA I
Sbjct: 282 GLSISKT--GIVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNI 330
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 38.7 bits (91), Expect = 0.011
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 1322 NSEKIFKCDLVLLAMGF---LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGD 1378
+ ++I + D +++ GF LGP I N L ++ N V+ T T + +AAGD
Sbjct: 232 DRKEILEIDDLIVNYGFVSSLGP---IKN-WGLDIE--KNSIVVKSTMETNIEGFFAAGD 285
Query: 1379 CR 1380
Sbjct: 286 IC 287
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 38.7 bits (91), Expect = 0.015
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG-----FLGPERYIANELDLTLDPRS 1357
VKVE K+ + +S+ I D ++ +G +G E + + L+
Sbjct: 250 VKVE--KNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSE-----NVGIKLNSH- 301
Query: 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSL--VVWAISEGRQAAR 1398
+ ++ T VP +Y+ GD L V AI+ GR+ +
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDVVGKVELTPV--AIAAGRKLSN 342
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 38.5 bits (90), Expect = 0.018
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 1324 EKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ 1383
+ + D ++L G E + NEL + + + +Y GD
Sbjct: 630 HRWIEFDSLVLVTGRH-SECTLWNEL---------KARESEWAENDIKGIYLIGDAEAP- 678
Query: 1384 SLVVWAISEGRQAAREIDS 1402
L+ A G + AREI+
Sbjct: 679 RLIADATFTGHRVAREIEE 697
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 37.5 bits (88), Expect = 0.027
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANE 1348
+ +V + + + D +L+A G L +
Sbjct: 232 EVLEHTQASQVAHMDGEF------VLTTTHGELRADKLLVATGRTPNTRSLALD-----A 280
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+T++ + +++ T+ P +YAAGDC V A + G +AA +
Sbjct: 281 AGVTVNAQ-GAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINM 331
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 37.5 bits (88), Expect = 0.031
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 18/123 (14%)
Query: 1284 SEALNQLLQTN--NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG---- 1337
S L + + +E +DA G + + + ++ D V+ A+G
Sbjct: 210 SATLAENMHAQGIETHLEFAVAALE--RDAQGTTLVAQ--DGTRLEGFDSVIWAVGRAPN 265
Query: 1338 --FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQ 1395
LG E + + + T VP VYA GD L AI+ GR+
Sbjct: 266 TRDLGLE-----AAGIEVQSN-GMVPTDAYQNTNVPGVYALGDITGRDQLTPVAIAAGRR 319
Query: 1396 AAR 1398
A
Sbjct: 320 LAE 322
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A*
2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 37.6 bits (88), Expect = 0.034
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 19/118 (16%)
Query: 1291 LQTNNFPAGIKTVKVEWTKDATGRWKM-DEVPNSEKIFKCDLVLLAMG------FLGPER 1343
P ++ ++E R + + V+LA+G +G E
Sbjct: 267 FIRQFVPIKVE--QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLE- 323
Query: 1344 YIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL---VVWAISEGRQAAR 1398
+ + ++ ++ V T VP +YA GD + V AI GR A+
Sbjct: 324 ----TVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPV--AIQAGRLLAQ 375
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 37.1 bits (87), Expect = 0.041
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 1319 EVPNSEKIFKCDLVLLAMGF------LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPR 1372
+ K + VL A+GF G + + + L R V+ T V
Sbjct: 250 TKDGVAQELKAEKVLQAIGFAPNVEGYGLD-----KAGVALTDR-KAIGVDDYMRTNVGH 303
Query: 1373 VYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+YA GD L A ++G AA I
Sbjct: 304 IYAIGDVNGLLQLAHVAEAQGVVAAETI 331
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 36.7 bits (86), Expect = 0.043
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 1322 NSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR 1381
EK+ + D V + +G + P+ + + LD R Y V+ T+VP VYAAGD
Sbjct: 234 GEEKLIETDGVFIYVGLI-PQTSFLKDSGVKLDER-GYIVVDSRQRTSVPGVYAAGDVTS 291
Query: 1382 G---QSLVVWAISEGRQAAREIDSFLM 1405
G Q + A+ +G +AA + S +
Sbjct: 292 GNFAQ--IASAVGDGCKAALSLYSDSI 316
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 36.7 bits (86), Expect = 0.057
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 1301 KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANELDLTLD 1354
VK+ A G + I + D+VL++ G L + ++ + D
Sbjct: 249 DGVKLTVEPSAGG---------EQTIIEADVVLVSAGRTPFTSGLNLD-----KIGVETD 294
Query: 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL 1385
V + + T V VYA GD G L
Sbjct: 295 KL-GRILVNERFSTNVSGVYAIGDVIPGPML 324
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 36.3 bits (85), Expect = 0.072
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+ SE+ CD + A+ P+ ++ + + V+ T+VP V+A GDC
Sbjct: 224 LETSEQEISCDSGIFALNLH-PQLAYLDK-KIQRNLDQTI-AVDAYLQTSVPNVFAIGDC 280
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 36.3 bits (85), Expect = 0.075
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKM-DEVPNSEKIFKCDLVLLAMG------FLGPERYIAN 1347
F K D + ++ CD++L+ +G LG E
Sbjct: 236 KFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLE----- 290
Query: 1348 ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG 1382
EL + LDPR V + T +P +YA GD G
Sbjct: 291 ELGIELDPR-GRIPVNTRFQTKIPNIYAIGDVVAG 324
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.9 bits (84), Expect = 0.087
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 1322 NSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRR 1381
K + V + +GF P A + D Y V++ T+VP V+AAGDC
Sbjct: 233 GEIKELNVNGVFIEIGFD-PPTDFAKSNGIETDTN-GYIKVDEWMRTSVPGVFAAGDCTS 290
Query: 1382 GQSL---VVWAISEGRQAAREIDSFL 1404
V+ A+++G AA ++
Sbjct: 291 AWLGFRQVITAVAQGAVAATSAYRYV 316
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 36.0 bits (84), Expect = 0.095
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANEL---DLTLDPRSNYSTVEKTYLTTVPRVYAA 1376
+ + + D+V+LA+GF P L + L + V K T++P VYA
Sbjct: 271 IITDKNEYDVDMVILAVGFR-PN----TTLGNGKIDLFRNGAF-LVNKRQETSIPGVYAI 324
Query: 1377 GDC 1379
GDC
Sbjct: 325 GDC 327
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 35.9 bits (84), Expect = 0.10
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
K K D+ +L +GF P + + + ++ ++ ++AAGD
Sbjct: 227 KTLDGKEIKSDIAILCIGFR-PNTELLKG-KVAMLDNGAI-ITDEYMHSSNRDIFAAGDS 283
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 35.9 bits (84), Expect = 0.11
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 1320 VPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
V + + DLV++A+G P L L P ++ T+ P V+A GD
Sbjct: 226 VVTDKNAYDADLVVVAVGVR-PNTAWLKG-TLELHPNGLIK-TDEYMRTSEPDVFAVGDA 282
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 35.6 bits (83), Expect = 0.13
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANE 1348
G + E EK D +++A+G L +
Sbjct: 237 KILLGARVTGTEVKNK--QVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAA-----D 289
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG 1382
+TLD R + V+ T+VP VYA GD RG
Sbjct: 290 SGVTLDER-GFIYVDDYCATSVPGVYAIGDVVRG 322
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1jeh_A*
Length = 478
Score = 35.2 bits (82), Expect = 0.17
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 1301 KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANELDLTLD 1354
V++ T ++ + +++L+A+G LG E ++ L +D
Sbjct: 257 NVVEIVVEDTKTN---------KQENLEAEVLLVAVGRRPYIAGLGAE-----KIGLEVD 302
Query: 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRG 1382
R ++ + + P + GD G
Sbjct: 303 KR-GRLVIDDQFNSKFPHIKVVGDVTFG 329
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 35.0 bits (81), Expect = 0.17
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 31/114 (27%)
Query: 580 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCH 639
AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 389 AETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC------- 441
Query: 640 LNTCPVGIATQDPELRKKFAGKP--EHVINYLFMLAEEVRTHMAKLGIRKFADL 691
G+ E I +L +E+ M LG+ A+L
Sbjct: 442 -------------------YGRNGVEKAIE---ILRDEIEMSMRLLGVTSIAEL 473
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 35.0 bits (81), Expect = 0.18
Identities = 29/120 (24%), Positives = 38/120 (31%), Gaps = 20/120 (16%)
Query: 1291 LQTNNFPAGI---KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGP 1341
P I K V E K K + + + V+ A+G +
Sbjct: 343 FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLC 402
Query: 1342 ERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL---VVWAISEGRQAAR 1398
E + + LD TTV VYA GD G+ V AI GR AR
Sbjct: 403 E-----TVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDINAGKPQLTPV--AIQAGRYLAR 454
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 35.2 bits (82), Expect = 0.19
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 1301 KTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANELDLTLD 1354
KV + G ++VL+A G LG + + LD
Sbjct: 270 DGAKVTFEPVKGG---------EATTLDAEVVLIATGRKPSTDGLGLA-----KAGVVLD 315
Query: 1355 PRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
R +++ + T++ VYA GD RG L A EG A I
Sbjct: 316 SR-GRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEII 360
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 34.8 bits (81), Expect = 0.20
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 18/123 (14%)
Query: 1284 SEALNQLLQTN--NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG---- 1337
SE L +++ V K+ G + + D ++ A+G
Sbjct: 211 SETLVEVMNAEGPQLHTNAIPKAVV--KNTDGSLTL--ELEDGRSETVDCLIWAIGREPA 266
Query: 1338 --FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQ 1395
+ E + + + Y V+K T + +YA GD L A++ GR+
Sbjct: 267 NDNINLE-----AAGVKTNEK-GYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRR 320
Query: 1396 AAR 1398
+
Sbjct: 321 LSE 323
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 34.8 bits (81), Expect = 0.24
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 1323 SEKIFKCDLVLLAMGF------LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAA 1376
++ + D VL+A+G L E L+ D R V++ T VP +YA
Sbjct: 247 GGEVLEADRVLVAVGRRPYTEGLSLE-----NAGLSTDER-GRIPVDEHLRTRVPHIYAI 300
Query: 1377 GDCRRGQSL 1385
GD RG L
Sbjct: 301 GDVVRGPML 309
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 34.6 bits (80), Expect = 0.27
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 19/83 (22%)
Query: 1319 EVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGD 1378
+ ++ D V++ G P R +A L + V+ G
Sbjct: 607 VINGETQVLAVDNVVICAGQE-PNRALAQPLI-----------------DSGKTVHLIGG 648
Query: 1379 CRRGQSL-VVWAISEGRQAAREI 1400
C L AI++G + A EI
Sbjct: 649 CDVAMELDARRAIAQGTRLALEI 671
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 34.0 bits (79), Expect = 0.37
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANELDLTLDPR 1356
V DA GR + + E + D V+LA+G LG E + +
Sbjct: 235 QSVS--ADADGRRVATTMKHGEIVA--DQVMLALGRMPNTNGLGLE-----AAGVRTNEL 285
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSL--VVWAISEGRQAAR 1398
V+ T+ P +YA GD L V AI E
Sbjct: 286 -GAIIVDAFSRTSTPGIYALGDVTDRVQLTPV--AIHEAMCFIE 326
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 33.8 bits (78), Expect = 0.41
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 1351 LTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG---QSLVVWAISEGRQAAREIDSFLM 1405
L + ++ T+V V+AAGDC Q ++ A EG +A+ +L+
Sbjct: 462 LERNRM-GEIIIDAKCETSVKGVFAAGDCTTVPYKQ--IIIATGEGAKASLSAFDYLI 516
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 33.8 bits (78), Expect = 0.44
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 1284 SEALNQLLQTN--NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF--- 1338
L ++ N N V+++ K + + + + D V+ +G
Sbjct: 220 INVLENDMKKNNINIVTFADVVEIK--KVSDKNLSI-HLSDGRIYEHFDHVIYCVGRSPD 276
Query: 1339 ---LGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQ 1395
L E +L++ + +NY V++ T+V +YA GDC + +
Sbjct: 277 TENLKLE-----KLNVETN--NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLK 329
Query: 1396 AAREIDSFLMGTSTLPDVGG 1415
E + D+
Sbjct: 330 LYNEERYLNKKENVTEDIFY 349
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET:
FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 33.9 bits (78), Expect = 0.45
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC--------- 1379
D ++ A+G L P +A L +D V L ++ AGD
Sbjct: 271 TDHIVAAVG-LEPNVELAKTGGLEIDSDFGGFRVN-AELQARSNIWVAGDAACFYDIKLG 328
Query: 1380 -RRGQSLVVW--AISEGRQAAREI 1400
RR + A+ GR A +
Sbjct: 329 RRRVEH---HDHAVVSGRLAGENM 349
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 33.6 bits (78), Expect = 0.54
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 1318 DEVPNSEKIFKCDLVLLAMG------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVP 1371
+P I D +L A+G L +L + D + + V++ T V
Sbjct: 271 GRLPVMTMIPDVDCLLWAIGRVPNTKDLSLN-----KLGIQTDDK-GHIIVDEFQNTNVK 324
Query: 1372 RVYAAGDCRRGQSLVVWAISEGRQAAR 1398
+YA GD L AI+ GR+ A
Sbjct: 325 GIYAVGDVCGKALLTPVAIAAGRKLAH 351
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural
genomics center for infectious gluathione reductase,
oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Length = 484
Score = 33.6 bits (78), Expect = 0.55
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 1322 NSEKIFKCDLVLLAMG------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYA 1375
+ + D V+LA G LG E + ++ V++ T V ++A
Sbjct: 270 TNGQTICADRVMLATGRVPNTTGLGLE-----RAGVKVNEF-GAVVVDEKMTTNVSHIWA 323
Query: 1376 AGDCRRGQSLVVWAISEGRQAAR 1398
GD L AI + +
Sbjct: 324 VGDVTGHIQLTPVAIHDAMCFVK 346
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 33.6 bits (78), Expect = 0.55
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANE 1348
E +D G E K D VL+ +G LG E +
Sbjct: 227 EVVTNALAKGAEERED--GVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLE-----Q 279
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ + + R V++ T+VP ++A GD G +L A EG+ AA I
Sbjct: 280 IGIKMTNR-GLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAI 330
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 33.3 bits (77), Expect = 0.66
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 1322 NSEKIFKCDLVLLAMG------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYA 1375
S K D+V++A+G L + + L P+ V++ T VP +YA
Sbjct: 274 ESGKTLDVDVVMMAIGRIPRTNDLQLG-----NVGVKLTPK-GGVQVDEFSRTNVPNIYA 327
Query: 1376 AGDCRRGQSL--VVWAISEGRQAAR 1398
GD L V AI+EG
Sbjct: 328 IGDITDRLMLTPV--AINEGAALVD 350
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 33.3 bits (77), Expect = 0.68
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 25/129 (19%)
Query: 1284 SEALNQLLQTN--NFPAGIKTVKVEWTKDATGRWKM---DEVPNSEKIFKCDLVLLAMG- 1337
+E + ++ F + VE K G+ + + E D VL A+G
Sbjct: 230 AELVAASMEERGIPFLRKTVPLSVE--KQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287
Query: 1338 -----FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL---VVWA 1389
L +T+ + V+ T V +YA GD G+ V A
Sbjct: 288 KGLVDDLNLP-----NAGVTVQ--KDKIPVDSQEATNVANIYAVGDIIYGKPELTPV--A 338
Query: 1390 ISEGRQAAR 1398
+ GR AR
Sbjct: 339 VLAGRLLAR 347
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 33.3 bits (77), Expect = 0.69
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANELDLTLDPR 1356
VE ++ G ++ + + D VL+A+G E LDL ++
Sbjct: 233 HSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLE-----CLDLKMNGA 285
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ +++ T++ V+A GD L A+++G A I
Sbjct: 286 A--IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEII 327
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.75
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1250 RCMECGVPFCQSSH 1263
+C ECG F Q+SH
Sbjct: 14 QCEECGKRFTQNSH 27
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Length = 482
Score = 32.9 bits (76), Expect = 0.79
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANE 1348
N KTV VE +D + ++ + D VL+A G + E +
Sbjct: 242 NIMVNTKTVAVEPKEDGV-YVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAE-----K 295
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+ + R + V+K T VP +YA GD L A+ EG AA
Sbjct: 296 AGVAVTDR-GFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENC 346
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 32.4 bits (73), Expect = 0.85
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1250 RCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGI 1300
+C C PFC GC N + L+ +L N++ + I
Sbjct: 106 QCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYESDI 156
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 1.00
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q SH
Sbjct: 15 CNECGKSFIQKSH 27
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 1.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F QS+H
Sbjct: 15 CNECGKSFIQSAH 27
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 1.2
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 1251 CMECGVPFCQSSH 1263
C CG FC S
Sbjct: 15 CDICGKSFCGRSR 27
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 1.3
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 1251 CMECGVPFCQSSH 1263
C EC F Q H
Sbjct: 15 CKECRKTFIQIGH 27
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.3
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 1197 DKKKVDRSIDKTRGFIK-YSRETAP 1220
+K+ ++ K + +K Y+ ++AP
Sbjct: 18 EKQ----ALKKLQASLKLYADDSAP 38
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 1.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q S
Sbjct: 15 CNECGKTFSQKSI 27
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 32.1 bits (74), Expect = 1.4
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF------LGPERYIANE 1348
F K V D+ +++ + C+ +L+++G LG + +
Sbjct: 232 KFMTSTKVVGGTNNGDSV-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLD-----K 285
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC 1379
+++ + R + + + T++P VYA GD
Sbjct: 286 INVAKNER-GFVKIGDHFETSIPDVYAIGDV 315
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 1.4
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 1251 CMECGVPFCQSSH 1263
C C F Q +H
Sbjct: 15 CKVCSKAFTQKAH 27
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 1.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1250 RCMECGVPFCQSSH 1263
+C ECG F Q+S
Sbjct: 14 KCEECGKRFTQNSQ 27
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Length = 46
Score = 28.2 bits (64), Expect = 1.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q++H
Sbjct: 15 CKECGKAFSQTTH 27
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 32.1 bits (74), Expect = 1.7
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 1295 NFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG------FLGPERYIANE 1348
K V E KD + D VL+A+G LG E +
Sbjct: 226 RVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLE-----K 280
Query: 1349 LDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRG 1382
+ +D R + V T+VP VYA GD R
Sbjct: 281 AGVKVDER-GFIRVNARMETSVPGVYAIGDAARP 313
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1250 RCMECGVPFCQSSH 1263
+C ECG F +S
Sbjct: 14 KCEECGKGFYTNSQ 27
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG + Q H
Sbjct: 15 CGECGKSYNQRVH 27
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 1.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q+SH
Sbjct: 15 CNECGKVFTQNSH 27
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 1.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1250 RCMECGVPFCQSSH 1263
+C CG F QSSH
Sbjct: 14 KCDVCGKEFSQSSH 27
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 1.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F + SH
Sbjct: 15 CNECGKGFGRRSH 27
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 31.8 bits (73), Expect = 1.8
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 1322 NSEKIFKCDLVLLAMG------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYA 1375
S D+V+LA+G L E + + + V+ T V +YA
Sbjct: 270 ESGAEADYDVVMLAIGRVPRSQTLQLE-----KAGVEVAKN-GAIKVDAYSKTNVDNIYA 323
Query: 1376 AGDCRRGQSL--VVWAISEGRQAAR 1398
GD L V AI+EG
Sbjct: 324 IGDVTDRVMLTPV--AINEGAAFVD 346
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 1.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1250 RCMECGVPFCQSSH 1263
+C CG F Q +H
Sbjct: 13 KCETCGARFVQVAH 26
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural
genomics, secsg, hyperthermoph protein structure
initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 31.8 bits (73), Expect = 1.9
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 1308 TKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYL 1367
+ V + + + + A+G + P +A + ++ +
Sbjct: 202 LNSELLEANEEGVLTNSGFIEGKVKICAIGIV-PNVDLARRSGIHTG---RGILIDDNFR 257
Query: 1368 TTVPRVYAAGDC 1379
T+ VYA GDC
Sbjct: 258 TSAKDVYAIGDC 269
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 1.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1250 RCMECGVPFCQSSH 1263
+C ECG F + +H
Sbjct: 14 KCSECGKAFHRHTH 27
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Length = 46
Score = 28.2 bits (64), Expect = 2.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F SS
Sbjct: 15 CAECGKSFSISSQ 27
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q+SH
Sbjct: 15 CNECGKVFTQNSH 27
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 2.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q+SH
Sbjct: 15 CNECGKVFTQNSH 27
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 31.4 bits (72), Expect = 2.2
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC------RRG 1382
CDLV++ +G + P IA L V++ LT+ P + A GDC R G
Sbjct: 230 CDLVVVGVGVI-PNVEIAAAAGLPTA---AGIIVDQQLLTSDPHISAIGDCALFESVRFG 285
Query: 1383 QSLVV--W--AISEGRQAAREI 1400
+++ V A + R A +
Sbjct: 286 ETMRVESVQNATDQARCVAARL 307
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 31.4 bits (72), Expect = 2.4
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC-----RRGQ 1383
D L+ +G P +A + L D V+ T V+A GD R G
Sbjct: 230 ADSALICVG-AEPADQLARQAGLACD---RGVIVDHCGATLAKGVFAVGDVASWPLRAGG 285
Query: 1384 SLVV--W--AISEGRQAAREI 1400
+ + A + A I
Sbjct: 286 RRSLETYMNAQRQAAAVAAAI 306
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 31.4 bits (72), Expect = 2.4
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC-------RR 1381
D+V++ +G + P + N V++ T++ VYA GDC
Sbjct: 240 ADIVIVGIGIV-PCVGALISAGASGG---NGVDVDEFCRTSLTDVYAIGDCAAHANDFAD 295
Query: 1382 GQSLVV--W--AISEGRQAAREI 1400
G + + A AA++I
Sbjct: 296 GAVIRLESVQNANDMATAAAKDI 318
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 31.0 bits (71), Expect = 2.6
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 31/103 (30%)
Query: 591 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQ 650
+ +V + DG +R G DV+ A LGA + + + +
Sbjct: 304 VEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF------------------ 345
Query: 651 DPELRKKFAGKP--EHVINYLFMLAEEVRTHMAKLGIRKFADL 691
G+ + V+ +L EE R MA G + +
Sbjct: 346 --------QGEKGVQDVLE---ILKEEFRLAMALSGCQNVKVI 377
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain
containing protein 16, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 28.2 bits (64), Expect = 3.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 1251 CMECGVPFCQSSH 1263
C ECG F Q SH
Sbjct: 49 CDECGKAFIQRSH 61
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold,
acid phosphatase, arabidopsis THAL thylakoid lumen,
hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A
3ptj_A
Length = 153
Score = 29.8 bits (67), Expect = 3.7
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 184 LILVHREVHHMCVLLGYGA-----DAICPYLVFEMAKSLRAEGNYCDAMERGISKVMA 236
++++ + G + I V E L + Y +A+ +++A
Sbjct: 85 IVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVA 142
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 4.1
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 311 WRAGGEKHI-----NDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFV 363
WR K + V +E A + + R + +E K + F
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR-QSEQVEKNKINNRIADKAFY 146
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase;
HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5
c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.6 bits (70), Expect = 4.1
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC------RRG 1382
DLV+ +G + P +A+ L +D N + + T+ P + A GDC
Sbjct: 239 ADLVIAGIGLI-PNCELASAAGLQVD---NGIVINEHMQTSDPLIMAVGDCARFHSQLYD 294
Query: 1383 QSLVV--W--AISEGRQAAREI 1400
+ + + A+ + R+ A +
Sbjct: 295 RWVRIESVPNALEQARKIAAIL 316
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase,
lipopolysaccharide, viral protein; 1.50A {Siphovirus
9na}
Length = 543
Score = 30.5 bits (68), Expect = 4.9
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 31/142 (21%)
Query: 835 SFCAFLVRGVHVTLEGDANDYVGKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSG 894
+ +L + L +++ I + +T N +VG YG+ S
Sbjct: 164 TMGGYLFTLCNHILVESPRNFIA----WESGITFENHHTTAWGTGNKVVGGEIKYGSGSA 219
Query: 895 KAFFRGIAAERFSVRNSGAVAVVEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYV 954
F R +G DH GG + L ++ G SG Y
Sbjct: 220 VLFIRN-----------------DGGDDHD-----GG---VRDLI--SYRVGESGVKTYQ 252
Query: 955 LDVDGSFAKKCNMEMVELLPLE 976
++ G A+ + + ++
Sbjct: 253 NEIGGRSARNYRLVFDNITTIQ 274
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 30.1 bits (69), Expect = 5.3
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 1351 LTLDPRSNYSTVEKTYLTTVPRVYAAGDCR----RGQSLVVWAISEGRQAAREIDSFLM 1405
+ + ++ T V V+AAGDC + Q ++ A EG +A+ +L+
Sbjct: 251 VERNRM-GEIIIDAKCETNVKGVFAAGDCTTVPYK-Q--IIIATGEGAKASLSAFDYLI 305
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 30.5 bits (68), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 1364 KTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMGTST 1409
+P ++ AG+ R G S+ A+S G AA + S+L ST
Sbjct: 454 DKMEKNLPGLFYAGNHRGGLSVGK-ALSSGCNAADLVISYLESVST 498
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 30.2 bits (69), Expect = 5.6
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 1329 CDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC------RRG 1382
D+V++ +G L +A L D + V+ TT P VYA GD G
Sbjct: 228 ADMVVVGIGVL-ANDALARAAGLACD---DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 283
Query: 1383 QSLVV--W--AISEGRQAAREI 1400
+ + W A ++G AR +
Sbjct: 284 RFERIETWSNAQNQGIAVARHL 305
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 28.3 bits (64), Expect = 7.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1250 RCMECGVPFCQSSH 1263
+C C F +S H
Sbjct: 68 QCKTCQRKFSRSDH 81
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human
herpesvirus 8 type M} PDB: 3pov_A*
Length = 508
Score = 29.7 bits (66), Expect = 8.3
Identities = 15/127 (11%), Positives = 34/127 (26%)
Query: 237 KMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGITFEVLAQEAYDRHFLSYSER 296
K G + + A +F L + + + L ++F + A R + + ++
Sbjct: 18 KAGSAMEATPTPADLFSEDYLVDTLDGLTVDDQQAVLASLSFSKFLKHAKVRDWCAQAKI 77
Query: 297 TADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNNKNAYDRFRESNMESVKYSTL 356
M LR Y + + I + + + +
Sbjct: 78 QPSMPALRMAYNYFLFSKVGEFIGSEDVCNFFVDRVFGGVRLLDVASVYAACSQMNAHQR 137
Query: 357 RGQLDFV 363
V
Sbjct: 138 HHICCLV 144
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator
element, zinc finger protein, DNA- protein recognition;
HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 28.3 bits (64), Expect = 8.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 1250 RCMECGVPFCQSSH 1263
C ECG F +SS
Sbjct: 36 VCAECGKAFVESSK 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,373,482
Number of extensions: 1438801
Number of successful extensions: 3375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3296
Number of HSP's successfully gapped: 136
Length of query: 1429
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1323
Effective length of database: 3,742,167
Effective search space: 4950886941
Effective search space used: 4950886941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)