RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12805
(1429 letters)
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 580 bits (1497), Expect = 0.0
Identities = 265/572 (46%), Positives = 358/572 (62%), Gaps = 21/572 (3%)
Query: 169 ANVQLKIPMDASLKCLILVHREVHHMCVLLGYGADAICPYLVFEMAKSLR---------- 218
++ + SL + H+ VL+G GA + YL E
Sbjct: 208 HLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLFGSMPL 267
Query: 219 --AEGNYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGTPSRLGGI 276
NY A++ G+ K+M+KMGIS + SY+G FEA+GL+ ++ + F SR+ GI
Sbjct: 268 EKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEHFPAMVSRISGI 327
Query: 277 TFEVLAQEAYDRHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQEAASNNN 336
+ ++ ++H +Y+E L G+Y +R G++H + I LQ+A +N++
Sbjct: 328 GLNGIQKKVLEQHATAYNEEVVA---LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDS 384
Query: 337 KNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISI 396
+ ++ E + LR L+ + PV + EVE I KRF T MS G++S
Sbjct: 385 YTTFKKYSEQ-VNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSP 443
Query: 397 EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD-ENQRSAIKQVASGRFGVTSSYLAHA 455
EAH TL AMN+IGAKS++GEGGE+P R+ + +N SAIKQVASGRFGVT+ YL
Sbjct: 444 EAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQC 503
Query: 456 DDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIY 515
+L+IK+AQGAKPGEGG+LPG+KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIY
Sbjct: 504 RELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIY 563
Query: 516 DLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 575
DLK NP+A+++VKLVS G+G +A+GVAK A+ I+ISG+ GGTGAS T IK AGLPW
Sbjct: 564 DLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPW 623
Query: 576 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMM 635
E+G++E HQVL LN LR RV L+ DG ++TG D+V+AA+LGA+E G+ TA LI MGC M+
Sbjct: 624 EMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMV 683
Query: 636 RKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRT 695
R+CH NTCPVG+ QD +LR+KF G PE V+N LAEEVR +A LG R +++GRT
Sbjct: 684 RQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRT 743
Query: 696 DLLKPREVGANPKAKMLNFAFLLKNALHMRPG 727
DLL GA L+ L + PG
Sbjct: 744 DLLHQVSRGA-EHLDDLDLNPRLA---QVDPG 771
Score = 88.1 bits (218), Expect = 4e-18
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A+++VKLVS G+G
Sbjct: 526 KVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIG 585
Query: 1076 VVASGVAK 1083
+A+GVAK
Sbjct: 586 TIAAGVAK 593
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 578 bits (1490), Expect = 0.0
Identities = 281/600 (46%), Positives = 363/600 (60%), Gaps = 52/600 (8%)
Query: 171 VQLKIPMDASLKCLILVHREVHHMCVLLGYGADAICPYLVFEMAKSLRAEG--------- 221
++ + + ASL HH L+GYGA AICPYL E + +
Sbjct: 200 IRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLALESVRQWWLDEKTQKLMENG 259
Query: 222 ------------NYCDAMERGISKVMAKMGISTLQSYKGAQIFEAVGLAEEVINKCFKGT 269
NY ++E G+ K+++KMGIS L SY GAQIFEA+GL E++ F GT
Sbjct: 260 RLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGT 319
Query: 270 PSRLGGITFEVLAQEAYDRHFLSYSERTADMLVLRNPGYYHWRAGGEKHINDPVSIANLQ 329
SR+GG+T +A E H +++ E L N G+ ++R GGE H+N P +L
Sbjct: 320 TSRVGGLTIADVAGEVMVFHGMAFPEMAKK---LENFGFVNYRPGGEYHMNSPEMSKSLH 376
Query: 330 E-------AASNNNKNAYDRFRE--SNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEI 380
+ + NN AYD + ++ + LR LDF + + EVE I
Sbjct: 377 KAVAAYKVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESI 436
Query: 381 VKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD---------- 430
VKRF TG MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D
Sbjct: 437 VKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTL 496
Query: 431 ---------ENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTK 481
+ SAIKQ+ASGRFGVT YL L+IKMAQGAKPGEGG+LPG KV++
Sbjct: 497 PHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSE 556
Query: 482 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVAS 541
IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++SVKLV+E+G+G +A+
Sbjct: 557 YIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAA 616
Query: 542 GVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG 601
GVAK A+ I ISGHDGGTGAS + IK+AG PWELGV E H+VL N LR RV+L+ADG
Sbjct: 617 GVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADG 676
Query: 602 QIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGK 661
++TG+DVV+AAL+GA+E G + +I GC M R CH N CPVG+ATQ LR++F G
Sbjct: 677 GLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGV 736
Query: 662 PEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLLKNA 721
P V+N+ + +AEEVR+ +A LG R D++GRTDLLK R K + L LL
Sbjct: 737 PGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLDCLLNLP 796
Score = 89.6 bits (222), Expect = 2e-18
Identities = 47/69 (68%), Positives = 58/69 (84%)
Query: 1016 KVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG 1075
KV++ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++SVKLV+E+G+G
Sbjct: 553 KVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIG 612
Query: 1076 VVASGVAKS 1084
+A+GVAK+
Sbjct: 613 TIAAGVAKA 621
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 270
Score = 227 bits (580), Expect = 8e-68
Identities = 113/273 (41%), Positives = 148/273 (54%), Gaps = 26/273 (9%)
Query: 745 LDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPENSINLKLT 804
LD ++ + P+ + L Y N RA LS ++ K GL I ++L
Sbjct: 9 LDARIVADARPLFEEGEK-MQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLR 67
Query: 805 GSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYVGKGLSGGE 864
G+AGQS AF V+G+ + + GDANDYVGK GLSGG
Sbjct: 68 GTAGQSLGAFAVQGIKLEVMGDANDYVGK-------------------------GLSGGT 102
Query: 865 IIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAVVEGVGDHG 924
I++ P +S E++KN I+GN LYGAT+GK F G A ERF+VRNSGA VVEG G +G
Sbjct: 103 IVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNG 162
Query: 925 CEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLELPEDLDYV 984
CEYMTGG AVILG G NFAAGM+GG+AYV D+D S N E V +E+ +
Sbjct: 163 CEYMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQL 222
Query: 985 KSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKV 1017
K L+ E +T+S A +L W +F +V
Sbjct: 223 KHLIEEHVTETQSRFAAEILNDWAREVTKFWQV 255
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase,
C-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 268
Score = 211 bits (537), Expect = 4e-62
Identities = 104/281 (37%), Positives = 145/281 (51%), Gaps = 29/281 (10%)
Query: 739 HQLEKRLDNTLIQ--ECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIKTKEEGLPE 796
H LD+ ++ + + ++ + Y + N R LS I+ K E
Sbjct: 2 HSNGPVLDDDILADPDIQEAINHQTT-ATKTYRLVNTDRTVGTRLSGAIA-KKYGNNGFE 59
Query: 797 NSINLKLTGSAGQSFCAFLVRGVHVTLEGDANDYVGKESFCAFLVRGVHVTLEGDANDYV 856
+I L G+AGQSF AF + G+ + L+G+ANDYVGK
Sbjct: 60 GNITLNFQGAAGQSFGAFNLDGMTLHLQGEANDYVGK----------------------- 96
Query: 857 GKGLSGGEIIIYPPKTSTFESDKNVIVGNVCLYGATSGKAFFRGIAAERFSVRNSGAVAV 916
G++GGEI+I P ++F + NVI+GN CLYGAT G + G A ERF+VRNS AV
Sbjct: 97 --GMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKAV 154
Query: 917 VEGVGDHGCEYMTGGCAVILGLTGRNFAAGMSGGIAYVLDVDGSFAKKCNMEMVELLPLE 976
+EG GDH CEYMTGG V+LG GRN AGM+GG+AY LD G +K N E++ L +
Sbjct: 155 IEGAGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRIT 214
Query: 977 LPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKV 1017
+ + +KSL+ E T S K +L W +F +
Sbjct: 215 ASKGEEQLKSLITAHVEHTGSPKGKAILANWSDYLGKFWQA 255
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 158 bits (401), Expect = 3e-43
Identities = 47/360 (13%), Positives = 110/360 (30%), Gaps = 58/360 (16%)
Query: 368 PVDISEVEPAAEIVKR-----FATGAMSFGS--ISIEAHTTLAKAMNKIGAKSNTGEGGE 420
+ + +V+ + +I + AM+ G ++ E + +LA+A ++ G G
Sbjct: 17 DLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQ-- 74
Query: 421 NPERYLSSGDENQRSAIKQVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT 480
+ + S R + + L + +
Sbjct: 75 --------------MSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIG 120
Query: 481 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVA 540
+ +V ++ +++ + ++ + + VK V A
Sbjct: 121 ANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSV-----PVIVKEVGFGMSKASA 175
Query: 541 SGVAKGKAEHIVISGHDGGTGAS--SWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQ 598
+ + A + I G+ G + + + G++ + + + +
Sbjct: 176 GKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMI 235
Query: 599 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF 658
A G ++ DV A LGA G++ L+
Sbjct: 236 ASGGLQDALDVAKAIALGASCTGMAG---------------------------HFLKALT 268
Query: 659 AGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGANPKAKMLNFAFLL 718
E ++ + ++ EE++ M LG R ADL + L+ E + +N +
Sbjct: 269 DSGEEGLLEEIQLILEELKLIMTVLGARTIADL-QKAPLVIKGETHHWLTERGVNTSSYS 327
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 152 bits (384), Expect = 5e-40
Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 33 KCVAHNGEINTVRGNVNFMKAREGVMKSP-HIPDIKQLYPVVEPNLSDSGAADC------ 85
+ +AHNGEINTV+GNVN+MKA E M+ P ++ L PV+ LSDSG+ D
Sbjct: 226 RMLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMV 285
Query: 86 --------AVMTMVPEAWQNDGTMPDEKRDFYNWAACAMEPWDGPALLTFTDGRYIGAIL 137
M +VP+A + T PD + + MEPWDGPA L TDGR++ +
Sbjct: 286 RAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGM 345
Query: 138 DRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANVQLK 174
DRNGLRP R+ + D +++ SE G+ D V K
Sbjct: 346 DRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEK 382
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 150 bits (381), Expect = 1e-39
Identities = 64/160 (40%), Positives = 94/160 (58%), Gaps = 18/160 (11%)
Query: 33 KCVAHNGEINTVRGNVNFMKAREGVMKSP--HIPDIKQLYPVVEPNLSDSGAADC----- 85
+ + HNGEINT+ GN+N+M ARE ++ +++ L P+V SDS D
Sbjct: 222 RLLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELL 281
Query: 86 ---------AVMTMVPEAWQNDGTMPD--EKRDFYNWAACAMEPWDGPALLTFTDGRYIG 134
A M +VPEA++N + D E DF+++ + EPWDGPALL F+DG+ +G
Sbjct: 282 VRTGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVG 341
Query: 135 AILDRNGLRPSRFYVLKDNVMVMASEVGVYDTDPANVQLK 174
A LDRNGLRP+R+ + KD+ +V+ SE GV D ++ K
Sbjct: 342 AGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEK 381
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 127 bits (319), Expect = 1e-32
Identities = 68/374 (18%), Positives = 116/374 (31%), Gaps = 76/374 (20%)
Query: 336 NKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKR-----FATGAMS 390
+ FR ++Y L G + +SEV+ + + F GAM+
Sbjct: 2 TTTGLEGFR------LRYQALAG----------LALSEVDLTTPFLGKTLKAPFLIGAMT 45
Query: 391 FGSISI-EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQVASGRFGVTS 449
G + + LA+A +G G G + A F V
Sbjct: 46 GGEENGERINLALAEAAEALGVGMMLGSGR--------------ILLERPEALRSFRVRK 91
Query: 450 SYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIED 509
+ +AQ + G L ++ + A H P + +E
Sbjct: 92 VAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVER 151
Query: 510 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIK 569
LAEL+ + VK V A + + ++G GGT +
Sbjct: 152 LAELL------PLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGA-GGTSWARVEEWV 204
Query: 570 NAGLP-----WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 624
G E+G+ +L + + + L A G + TG D A LGAD + ++
Sbjct: 205 RFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVAR 264
Query: 625 APLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVRTHMAKLG 684
L + E V ++ EE+RT + +G
Sbjct: 265 PLL----------------------------RPALEGAERVAAWIGDYLEELRTALFAIG 296
Query: 685 IRKFADLVGRTDLL 698
R + GR + +
Sbjct: 297 ARNPKEARGRVERV 310
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 99.2 bits (247), Expect = 2e-24
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 1189 DIEDVMG-----ADKKKVDRSIDKTRGFIKYSRET-APYRPAEKRLKDWDEIYATQHVRK 1242
DIE ++ + ++ K + R EK ++D+I T +
Sbjct: 10 DIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGER 69
Query: 1243 GLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPA 1298
G +A RC++C CQ CP I + I + N+ A + N
Sbjct: 70 GALREAMRCLKCADAPCQK--SCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGL 123
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 86.4 bits (212), Expect = 2e-18
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 17/151 (11%)
Query: 1274 WNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEV------PNSEKIF 1327
++ L ++A+ + L+ + + +++ + + +
Sbjct: 224 FSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEE 283
Query: 1328 KCDLVLLAMGF---------LGPERYIANELD-LTLDPRSNYSTVEKTYLTTVPRVYAAG 1377
D V++ ++ N + + + +P ++ AG
Sbjct: 284 SFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAG 343
Query: 1378 DCRRGQSLVVWAISEGRQAAREIDSFLMGTS 1408
+ R G S V A+S G AA + S+L S
Sbjct: 344 NHRGGLS-VGKALSSGCNAADLVISYLESVS 373
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 58.3 bits (140), Expect = 9e-10
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 8/150 (5%)
Query: 1258 FCQSSHGCPLGNIIPKWNDLIYH-NNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWK 1316
++HG + N+ ++ + L + ++ + VK +
Sbjct: 65 HSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEIS 124
Query: 1317 MDEVPNSEKIFKCDLVLLAMGFLGPERY------IANELDLTLDPRSNYSTVEKTYLTTV 1370
+D + + K +++A G R +++ + D V + + T V
Sbjct: 125 VDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLG-RILVNERFSTNV 183
Query: 1371 PRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
VYA GD G L A +G +
Sbjct: 184 SGVYAIGDVIPGPMLAHKAEEDGVACVEYL 213
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 58.6 bits (140), Expect = 2e-09
Identities = 36/304 (11%), Positives = 72/304 (23%), Gaps = 15/304 (4%)
Query: 1111 FKVDYGHEEVKVKHNHDPREFCILSSTLSSSLQFRDDKTSVVFPYEYQRALKQILAEGVE 1170
+ V+ G + + L ++ D + Y R +
Sbjct: 47 YLVEQGPNSFLDREPATRALAA--ALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAF 104
Query: 1171 NKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYRP---AEKR 1227
+ +++ + + + G + A
Sbjct: 105 LASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDV 164
Query: 1228 LKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEAL 1287
+ V+ ++ Q P G L + + L
Sbjct: 165 EQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVL 224
Query: 1288 NQLLQTNNFPAGIKTVKVEWTKDATGRWK-MDEVPNSEKIFKCDLVLLAMG------FLG 1340
L + A +VE G W+ + E V+LA L
Sbjct: 225 IDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLR 284
Query: 1341 PERYIANELDLTLDPRSNYSTVEK--TYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAR 1398
P L + + V L +P ++ G+ +G L I Q A
Sbjct: 285 PLDDALAALVAGIYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLND-CIRNAAQLAD 343
Query: 1399 EIDS 1402
+ +
Sbjct: 344 ALVA 347
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 57.0 bits (136), Expect = 3e-09
Identities = 26/174 (14%), Positives = 41/174 (23%), Gaps = 2/174 (1%)
Query: 1229 KDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALN 1288
K + + + + + + I S +
Sbjct: 51 KTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ 110
Query: 1289 QLL--QTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIA 1346
+ A G E +L G + +
Sbjct: 111 VIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLG 170
Query: 1347 NELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
E R NY TV++ T +YAAGDC L A +GR A
Sbjct: 171 LERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHA 224
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 52.7 bits (125), Expect = 1e-07
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 1362 VEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
V + T+VP VYA GD G + A G AAR +
Sbjct: 215 VNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNV 253
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 51.8 bits (123), Expect = 1e-07
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1348 ELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
++ + + R V++ T+VP ++A GD G +L A EG+ AA I
Sbjct: 162 QIGIKMTNR-GLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAI 213
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 49.7 bits (117), Expect = 7e-07
Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 15/190 (7%)
Query: 1225 EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWS 1284
EK + I + ++ F ++ L I + +
Sbjct: 33 EKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIA 92
Query: 1285 ------EALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG- 1337
L + + G+ + A + ++ S ++ + V+LA G
Sbjct: 93 RKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS 152
Query: 1338 -------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAI 1390
+A + +TLD R + V+ T+VP VYA GD RG L A
Sbjct: 153 KPVEIPRRPVTTDLLAADSGVTLDER-GFIYVDDYCATSVPGVYAIGDVVRGAMLAHKAS 211
Query: 1391 SEGRQAAREI 1400
EG A I
Sbjct: 212 EEGVVVAERI 221
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 50.3 bits (119), Expect = 1e-06
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 548 AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGF 607
G G ++ + +AET +L NL+ ++ + DG +R G
Sbjct: 260 VIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGT 319
Query: 608 DVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVIN 667
DV+ A LGA +GL L V
Sbjct: 320 DVLKALCLGAKGVGLGRPFLYANS---------------------------CYGRNGVEK 352
Query: 668 YLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPREVGAN 706
+ +L +E+ M LG+ A+L + DLL + A
Sbjct: 353 AIEILRDEIEMSMRLLGVTSIAEL--KPDLLDLSTLKAR 389
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 48.0 bits (113), Expect = 2e-06
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 11/175 (6%)
Query: 1234 IYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQT 1293
IYA + K L + + ++ Q+
Sbjct: 22 IYAARAELKPLLFEGWMANDI----APGGQLTTTTDVENFPGFPEGILGVELTDKFRKQS 77
Query: 1294 NNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANEL---D 1350
F I T V ++ +K+ K D V+LA+G + A +
Sbjct: 78 ERFGTTIFTETVTKVDFSSKPFKL---FTDSKAILADAVILAIGAVAKGHEPATKFLDGG 134
Query: 1351 LTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSL-VVWAISEGRQAAREIDSFL 1404
+ LD T T T+VP V+AAGD + + + A G AA + + +L
Sbjct: 135 VELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYL 189
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 48.3 bits (114), Expect = 2e-06
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 11/136 (8%)
Query: 1203 RSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSS 1262
R + RE A + + + T + + ++ +
Sbjct: 92 RGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADRE 151
Query: 1263 HGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPN 1322
++ ++ + I + E D +GR +
Sbjct: 152 PRPGHRRMVFRFLTSPIEIKGKRKVE----------RIVLGRNELVSDGSGRVAA-KDTG 200
Query: 1323 SEKIFKCDLVLLAMGF 1338
+ LV+ ++G+
Sbjct: 201 EREELPAQLVVRSVGY 216
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase
{Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 47.2 bits (111), Expect = 4e-06
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 1/123 (0%)
Query: 1278 IYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG 1337
++Q + ++V T FK ++
Sbjct: 100 GLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR 159
Query: 1338 FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAA 1397
+ A + + + R + V+K T VP +YA GD L A+ EG AA
Sbjct: 160 APNGKLISAEKAGVAVTDR-GFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAA 218
Query: 1398 REI 1400
Sbjct: 219 ENC 221
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 45.6 bits (107), Expect = 2e-05
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 1298 AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYI-ANELDLTLDPR 1356
V + T + + + V +G + A ++ L +D R
Sbjct: 123 ETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKR 182
Query: 1357 SNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
++ + + P + GD G L A EG A +
Sbjct: 183 -GRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEML 225
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 46.1 bits (107), Expect = 2e-05
Identities = 34/305 (11%), Positives = 73/305 (23%), Gaps = 20/305 (6%)
Query: 1104 WPQFPRIFKVDYGHEEVKVKHNHDPREFCILSSTLSSSLQFRDDKTSVVFPYEYQRALKQ 1163
+ +K + +F L+ + D+ V E ++++
Sbjct: 58 EGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEE 117
Query: 1164 ILAEGVENKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYRP 1223
+ K A + G ++ ++ + +D + K+ E A
Sbjct: 118 MGE-----KLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPR 172
Query: 1224 AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNW 1283
+ + R E V + + + + N
Sbjct: 173 VTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKV 232
Query: 1284 SEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPER 1343
V V+ ++ V S + + DL+ +
Sbjct: 233 VR---------EIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKV 283
Query: 1344 YIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDC--RRGQSLVVWAISEGRQAAREID 1401
+ R Y V RVY G+ V A G +A +
Sbjct: 284 RAIYQFWPVGVNRYEY----DQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339
Query: 1402 SFLMG 1406
+
Sbjct: 340 NCAQK 344
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 44.7 bits (104), Expect = 3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 1354 DPRSNYSTVEKTYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREI 1400
+ ++ V T VP +YA GD G+ L AI GR A+ +
Sbjct: 179 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRL 226
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 43.0 bits (100), Expect = 1e-04
Identities = 32/199 (16%), Positives = 51/199 (25%), Gaps = 16/199 (8%)
Query: 1217 ETAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKW-- 1274
+ + V K L + A M+ ++ P W
Sbjct: 34 DLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKA 93
Query: 1275 -----NDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKC 1329
N + N S T ++ R D +
Sbjct: 94 LIAAKNKAVSGINDSYE-GMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDT 152
Query: 1330 DLVLLAMGFLGPERYIA--NELDLTLDP------RSNYSTVEKTYLTTVPRVYAAGDCRR 1381
+ +LLA G I L L+ ++ V+ T V +YA GD
Sbjct: 153 EYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD 212
Query: 1382 GQSLVVWAISEGRQAAREI 1400
L AI+EG +
Sbjct: 213 RVMLTPVAINEGAAFVDTV 231
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3
{Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 40.9 bits (95), Expect = 2e-04
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 1247 QAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVE 1306
AR + V + + + + + +++ ++ V+ E
Sbjct: 67 CGARRVFL-VFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE 125
Query: 1307 WTKDATGRWKMDEVPNSEKIFKCDLVLLAMG 1337
D TG+W E + K D+V+ A G
Sbjct: 126 Q--DETGKWN--EDEDQIVHLKADVVISAFG 152
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 41.4 bits (96), Expect = 3e-04
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 8/151 (5%)
Query: 1258 FCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKM 1317
F + K+N + +++L +++ A
Sbjct: 61 FMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK 120
Query: 1318 DEVPNSEKIFKCDLVLLAMGFLG--PERYIANELDLTLD------PRSNYSTVEKTYLTT 1369
+ S K + +L+A G + P + N DL+L+ + V++ T
Sbjct: 121 PTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTN 180
Query: 1370 VPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
V +YA GD L AI+ GR+ A +
Sbjct: 181 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRL 211
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 41.0 bits (95), Expect = 5e-04
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 1298 AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGF 1338
AGI+ + G + C LVL ++G+
Sbjct: 187 AGIRLAVTRL--EGIGEATRAVPTGDVEDLPCGLVLSSIGY 225
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 39.9 bits (92), Expect = 0.002
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPE 653
R+ + DG +R G DV A LGA + + + ++
Sbjct: 279 RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA---------------------- 316
Query: 654 LRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADLVGRTDLLKPRE 702
A V L M+ +E MA G R ++ R+ + +
Sbjct: 317 -----AEGEAGVKKVLQMMRDEFELTMALSGCRSLKEI-SRSHIAADWD 359
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 39.5 bits (91), Expect = 0.002
Identities = 16/116 (13%), Positives = 26/116 (22%), Gaps = 10/116 (8%)
Query: 1298 AGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRS 1357
AG K G + C ++ + + LD+
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQ-NQKLGGMKGLDMNHA--E 255
Query: 1358 NYSTVEKTYLTTVPRVYAAGDC-------RRGQSLVVWAISEGRQAAREIDSFLMG 1406
+ + V +Y AG R G AA +I
Sbjct: 256 HDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 39.6 bits (91), Expect = 0.002
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 27/93 (29%)
Query: 599 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF 658
D R G D+V A LGA+ + L A L +
Sbjct: 280 IDSGFRRGSDIVKALALGAEAVLLGRATLYGLA--------------------------- 312
Query: 659 AGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
A V L +L ++ +A++G L
Sbjct: 313 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSL 345
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit
viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 39.4 bits (90), Expect = 0.003
Identities = 26/248 (10%), Positives = 62/248 (25%), Gaps = 12/248 (4%)
Query: 1164 ILAEGVENKEKAIEYTPGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYRP 1223
+ + K ++ PG VK E A + + + + +
Sbjct: 118 YFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKY 177
Query: 1224 AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNW 1283
K++ I + G + +
Sbjct: 178 DTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGM 237
Query: 1284 SEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSE-KIFKCDLVLLAMGFLGPE 1342
+ + + ++ ++ + E + E D V++
Sbjct: 238 DKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT-SRAV 296
Query: 1343 RYIANELDL---------TLDPRSNYSTVEKTYLTTVPRVYAAGD-CRRGQSLVVWAISE 1392
R I L ++ + + R+Y AG+ + + I
Sbjct: 297 RLIKFNPPLLPKKAHALRSVFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKS 356
Query: 1393 GRQAAREI 1400
G +AAR++
Sbjct: 357 GLRAARDV 364
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 36.8 bits (84), Expect = 0.007
Identities = 19/164 (11%), Positives = 35/164 (21%), Gaps = 17/164 (10%)
Query: 1180 PGFKLSNVKDIEDVMGADKKKVDRSIDKTRGFI------KYSRETAPYRPAEKRLKDWDE 1233
G V DV+ ++ G I S+ +
Sbjct: 8 DGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWG 67
Query: 1234 IYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQT 1293
I ++ GL Q + H + +
Sbjct: 68 IDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKM-- 125
Query: 1294 NNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG 1337
I V + D G + ++ D V++ G
Sbjct: 126 ------IPGVSYQK-IDDDGLHV--VINGETQVLAVDNVVICAG 160
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 37.2 bits (85), Expect = 0.013
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 27/98 (27%)
Query: 594 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPE 653
++ + DG +RTG DV+ A LGA I L L +
Sbjct: 272 KIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLA---------------------- 309
Query: 654 LRKKFAGKPEHVINYLFMLAEEVRTHMAKLGIRKFADL 691
+ V L +L E+ M G + A++
Sbjct: 310 -----CKGEDGVKEVLDILTAELHRCMTLSGCQSVAEI 342
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 36.1 bits (82), Expect = 0.016
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
+++ T++ V+A GD L A+++G A I
Sbjct: 170 AAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEII 212
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 36.2 bits (82), Expect = 0.020
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 1362 VEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
V++ T V +YA GD L AI+E +
Sbjct: 192 VDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTV 230
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 35.6 bits (81), Expect = 0.023
Identities = 31/179 (17%), Positives = 54/179 (30%), Gaps = 21/179 (11%)
Query: 1234 IYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQT 1293
+YA R L+ ME G ++ + E
Sbjct: 22 VYAA---RANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHE------HA 72
Query: 1294 NNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLT- 1352
F I + D R + + CD +++A G + N
Sbjct: 73 TKFETEIIFDHIN-KVDLQNRPF--RLNGDNGEYTCDALIIATGA-SARYHSPNTAIFEG 128
Query: 1353 -LDPRSNYSTVE-----KTYLTTVPRVYAAGDCRRGQS-LVVWAISEGRQAAREIDSFL 1404
L+ + Y V+ T++P V+AAGD + + G AA + + +L
Sbjct: 129 QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL 187
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 35.1 bits (79), Expect = 0.030
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 2/166 (1%)
Query: 1246 IQAAR-CMECGVPFCQSSHGCPLGNIIPKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVK 1304
I +AR + G+ + I + + A + + + + +
Sbjct: 18 IYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77
Query: 1305 VEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVEK 1364
+ + + R ++
Sbjct: 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDA 137
Query: 1365 TYLTTVPRVYAAGDCRRGQ-SLVVWAISEGRQAAREIDSFLMGTST 1409
T V V+AAGDC ++ A EG +A+ +L+ T T
Sbjct: 138 KCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKT 183
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 33.5 bits (75), Expect = 0.090
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 1358 NYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREIDSFLMG 1406
++ + T+ VYA GDC ++ + AR + L G
Sbjct: 118 RGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 166
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 32.5 bits (73), Expect = 0.099
Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 17/127 (13%)
Query: 1223 PAEKRLKDWDEIYATQHVRKGLRIQAARCMEC-GVPFCQSSHGCPLGNIIPKWNDLIYHN 1281
P D + + + I A + + I + +
Sbjct: 4 PGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDS 63
Query: 1282 NWSEALNQLLQ-------TNNFPAGIKT----VKVEWTKDATGRWKMDEVPNSEKIFKCD 1330
S + L+ + +K ++V GR +P I D
Sbjct: 64 MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR-----LPVMTMIPDVD 118
Query: 1331 LVLLAMG 1337
+L A+G
Sbjct: 119 CLLWAIG 125
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 32.5 bits (73), Expect = 0.12
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Query: 1225 EKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIP---KWNDLIYHN 1281
EK++ A + K L + A + + G + + +
Sbjct: 9 EKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEI 68
Query: 1282 NWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLA 1335
+ Q F K V V+ + D + I + D+VL++
Sbjct: 69 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 32.1 bits (72), Expect = 0.32
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 501 HHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGT 560
D + D+A I +K PN + ++ + + + + G T
Sbjct: 108 KRDRHDGLDIASFIRQVKEKYPNQLLMA----DISTFDEGLVAHQAGIDFVGTTLS-GYT 162
Query: 561 GASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 620
S ++ + E ++ + + A+G+I + + LG I
Sbjct: 163 PYSRQEA------GPDVALIEALC-------KAGIAVIAEGKIHSPEEAKKINDLGVAGI 209
Query: 621 GLSTA 625
+ A
Sbjct: 210 VVGGA 214
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria
meningitidis [TaxId: 487]}
Length = 125
Score = 31.0 bits (69), Expect = 0.44
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 8/123 (6%)
Query: 1220 PYRPAEKRLKDWDEIYATQHVRK-----GLRIQAARCMECGVPFCQSSHGCPLGNIIPKW 1274
P+ P + R+ D A + V G I + + + +
Sbjct: 5 PFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG 64
Query: 1275 NDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLL 1334
D W + + +N KTV VE +D + ++ + D VL+
Sbjct: 65 ADRDLVKVWQK--QNEYRFDNIMVNTKTVAVEPKEDGV-YVTFEGANAPKEPQRYDAVLV 121
Query: 1335 AMG 1337
A G
Sbjct: 122 AAG 124
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 31.8 bits (70), Expect = 0.70
Identities = 28/243 (11%), Positives = 56/243 (23%), Gaps = 23/243 (9%)
Query: 1187 VKDIEDVMGADKKKVDRSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYATQHVRKGLRI 1246
VK + A K+ D + + +E P++ L D H
Sbjct: 207 VKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFA 266
Query: 1247 QAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYH--NNWSEALNQLLQTNNFPAGIKTVK 1304
A + + +E L+ L T
Sbjct: 267 NATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASG 326
Query: 1305 VEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTVE- 1363
E T + + + + + +++ +
Sbjct: 327 CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMVAAGS 386
Query: 1364 ------------------KTYLTTVPRVYAAGD--CRRGQSLVVWAISEGRQAAREIDSF 1403
+PR++ AG+ R + V A+ G + A I
Sbjct: 387 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 446
Query: 1404 LMG 1406
+G
Sbjct: 447 FLG 449
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460
{Methanococcus jannaschii [TaxId: 2190]}
Length = 152
Score = 29.9 bits (67), Expect = 1.1
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 17/131 (12%)
Query: 1147 DKTSVVFPYEYQRALKQILAEGVENKEKA-IEYTPGFKLS------NVKDIEDVMGADK- 1198
K S P Y ++ + V+ Y G + N+++++ +
Sbjct: 17 IKESKKIPMPYFGLFALVIFDKVKELGSETSLYEIGEEFGKMLSPKNIEELKKIFKLMNF 76
Query: 1199 -----KKVDRSIDKTRGFIKYSRETAPYRPAEKRLKDWDEIYA----TQHVRKGLRIQAA 1249
+ + IK S + E+ + D+ + +
Sbjct: 77 GDLEIDENKILLKNPPYKIKLSNPPYQWVSKEEPIHDFIAGILAGCLEEIFYYYFVVNEV 136
Query: 1250 RCMECGVPFCQ 1260
C+ G C
Sbjct: 137 ECVSQGKDKCV 147
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 27.3 bits (60), Expect = 1.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1237 TQHVRKGLRIQAARCMECGVPFCQSSH 1263
+H+ L ++ C CG F H
Sbjct: 19 DRHMSMHLGLRPYGCGVCGKKFKMKHH 45
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 29.9 bits (67), Expect = 1.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 586 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 631
L + + ++A G IRT D V + GAD IG S+ I G
Sbjct: 200 LMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGVKIVQG 245
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 29.9 bits (66), Expect = 1.9
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 1300 IKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDP---- 1355
+ V+ K + + + D +L+A G ++ L+
Sbjct: 101 LGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVK 160
Query: 1356 --RSNYSTVEKTYLTTVPRVYAAGDCRRGQSLVVWAISEGRQAAREI 1400
Y V+K T + +YA GD L A++ GR+ + +
Sbjct: 161 TNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERL 207
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId:
35809]}
Length = 121
Score = 28.4 bits (62), Expect = 2.7
Identities = 11/66 (16%), Positives = 19/66 (28%)
Query: 1272 PKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDL 1331
P Q +G ++E + + + PN E + D
Sbjct: 56 PLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDF 115
Query: 1332 VLLAMG 1337
V L +G
Sbjct: 116 VFLGLG 121
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 28.6 bits (62), Expect = 3.6
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 12/145 (8%)
Query: 1272 PKWNDLIYHNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDL 1331
++ + + + GI+ V T + + F D
Sbjct: 42 CYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDR 99
Query: 1332 VLLAMG-------FLGPERYIANELDLTLDPRSNYSTVEKTYLTTVPRVYAAGDCRRGQS 1384
++A G IA LT D ++ + ++ GD
Sbjct: 100 CVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP 159
Query: 1385 L---VVWAISEGRQAAREIDSFLMG 1406
+ A S+G+ AA + L G
Sbjct: 160 MPKSGYSANSQGKVAAAAVVVLLKG 184
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 28.5 bits (62), Expect = 4.6
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 14/107 (13%)
Query: 1303 VKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMGFLGPERYIANELDLTLDPRSNYSTV 1362
KV K+++ A G P +A L +D
Sbjct: 104 KKVVQLDVRDNMVKLNDGSQITYEKCLI----ATGGTEPNVELAKTGGLEIDSD-FGGFR 158
Query: 1363 EKTYLTTVPRVYAAGDC---------RRGQSLVVWAISEGRQAAREI 1400
L ++ AGD RR A+ GR A +
Sbjct: 159 VNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENM 205
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 28.4 bits (63), Expect = 4.6
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 578 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 628
G + L + + R ++A G IR + GA +G S+ +
Sbjct: 159 GASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVAL 209
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 28.0 bits (61), Expect = 5.1
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 176 PMDASLKCLILVHREVHHMCVLLGYGADAICPYLVFEMAKSLRAEGNYCDAMERGISKVM 235
P D C + + V G + YL + +R N + G+S +
Sbjct: 67 PQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTR-RIVRVMPNTPGKIGLGVSGMY 125
Query: 236 AKMGISTLQSYKGAQIFEAVGLAEEV 261
A+ +S +I ++VGL +
Sbjct: 126 AEAEVSETDRRIADRIMKSVGLTVWL 151
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
vulgaris [TaxId: 881]}
Length = 69
Score = 26.2 bits (58), Expect = 5.8
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 1218 TAPYRPAEKRLKDWDEIYATQHVRKGLRIQAARCMECG 1255
TA RP + + D + I+ RCM CG
Sbjct: 25 TAAVRPTKLEIGD--------KKVNTIAIKNERCMYCG 54
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 119
Score = 27.4 bits (60), Expect = 5.8
Identities = 12/118 (10%), Positives = 25/118 (21%), Gaps = 9/118 (7%)
Query: 1225 EKRLKDWDEIYATQHVRK-----GLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIY 1279
+ + D Q+V G + + D
Sbjct: 6 QDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQV 65
Query: 1280 HNNWSEALNQLLQTNNFPAGIKTVKVEWTKDATGRWKMDEVPNSEKIFKCDLVLLAMG 1337
+ L + A + + EK D +++A+G
Sbjct: 66 AKEAQKILTKQGLKILLGARVTGTE----VKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 88
Score = 26.8 bits (59), Expect = 6.0
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 971 ELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKDIASTRHSVPG 1030
P+ +D VK+L + EK + +LL T + VK + + + P
Sbjct: 20 AKFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHWFDKSKGVK--ELTTAGKLPNPR 77
Query: 1031 VGLISPP 1037
P
Sbjct: 78 ASEFEGP 84
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE
{Chromobacterium violaceum [TaxId: 536]}
Length = 91
Score = 26.6 bits (59), Expect = 6.2
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 1224 AEKRLKDWDEIYATQHVRKGLRIQAARCMECGVPFCQSSHGCPLGNIIPKWNDLIYH 1280
+R Y KG + E +S +++ + DL +H
Sbjct: 11 EARREAAPQSSYVASLFHKGEDAILKKVAEEAAETLMASKDKDKLHLVREVADLWFH 67
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 6.5
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 965 CNMEMVELLPLELPEDLDYVKSLLVEFHEKTESEIAKNLLQTWPAPAKQFVKVTKDIAST 1024
C+ + + + E L Y+++ E+ ++A L + + +V ++
Sbjct: 389 CDRSNAQQI---VAEMLSYLETADYSIREEIVLKVA-ILAEKYAVDYTWYVDTILNLIRI 444
Query: 1025 RHSVPG-------VGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVG 1073
+ ++ Y+ + + E + C ++ ++ E G
Sbjct: 445 AGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFG 500
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 28.3 bits (62), Expect = 6.7
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 492 GVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHI 551
+I+ E L EL+ ++ PN I ++ A A+ ++I
Sbjct: 88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA----DIATVEEAKNAARLGFDYI 143
Query: 552 VISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVV 611
+ H + G ++ V + A+G + T
Sbjct: 144 GTTLHGYTSY---TQGQLLYQNDFQFLKDVLQSV--------DAKVIAEGNVITPDMYKR 192
Query: 612 AALLGADEIGLSTA 625
LG + A
Sbjct: 193 VMDLGVHCSVVGGA 206
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga
maritima [TaxId: 2336]}
Length = 124
Score = 27.1 bits (60), Expect = 7.0
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 848 LEGDANDYVGKGLSGGEIIIYPPKTSTFESD--KNVIVGNVCLYGATSGKAFFRG 900
E N + G EI P + + V +G+V + F G
Sbjct: 32 FESVVNTW------GEEIYFSTPVNVQKMENPREVVEIGDVGYWPPGKALCLFFG 80
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 28.4 bits (63), Expect = 7.9
Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 10/82 (12%)
Query: 673 AEEVRTHMAKLGIRKFADLVGRTDLLKPRE-VGANPKAKMLNFAFLLKNALHMRPGVNIR 731
AE V +H ++ +++ L E V + + A + +
Sbjct: 207 AELVLSHAERMNCKRY---------LTAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYA 257
Query: 732 AGSETQDHQLEKRLDNTLIQEC 753
+ R +
Sbjct: 258 FAEMMTEDVETCRDERCYRLWI 279
>d1knba_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
adenovirus type 5 [TaxId: 28285]}
Length = 186
Score = 27.5 bits (61), Expect = 9.0
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 867 IYPPKTSTFESDKNVIVGNVCLYGATS 893
YP + K+ IV V L G +
Sbjct: 108 AYPKSHGK--TAKSNIVSQVYLNGDKT 132
>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 362
Score = 27.8 bits (62), Expect = 9.6
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 270 PSRLGGITFEVLAQEAYDRHFLSYSERTADMLVL-RNPGYY 309
P+ GG FEVL + LS + D+L L P Y
Sbjct: 158 PTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARY 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,333,184
Number of extensions: 258677
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 72
Length of query: 1429
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1332
Effective length of database: 1,075,786
Effective search space: 1432946952
Effective search space used: 1432946952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)