Query psy12809
Match_columns 153
No_of_seqs 112 out of 558
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:19:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3394|consensus 100.0 1.9E-40 4.2E-45 280.8 13.0 148 2-153 87-235 (502)
2 PF13015 PRKCSH_1: Glucosidase 99.9 1.5E-27 3.2E-32 178.0 10.9 104 7-150 28-131 (154)
3 KOG2397|consensus 99.9 1.2E-21 2.6E-26 165.7 7.6 106 7-153 369-474 (480)
4 PF07915 PRKCSH: Glucosidase I 99.8 1.2E-21 2.5E-26 131.2 4.1 79 22-103 1-81 (81)
5 KOG3394|consensus 99.0 4.2E-11 9.1E-16 102.6 -0.5 133 13-149 338-476 (502)
6 PF02157 Man-6-P_recep: Mannos 98.2 1.9E-05 4.2E-10 63.9 10.6 114 13-149 51-182 (278)
7 KOG4504|consensus 97.1 0.0025 5.4E-08 52.4 7.1 58 91-148 164-225 (370)
8 PF09451 ATG27: Autophagy-rela 95.9 0.029 6.4E-07 45.3 6.6 55 90-147 116-171 (268)
9 cd01206 Homer Homer type EVH1 47.3 32 0.0007 24.3 3.6 50 91-145 10-61 (111)
10 smart00041 CT C-terminal cysti 29.5 66 0.0014 20.9 2.8 37 98-136 40-76 (82)
11 KOG4504|consensus 28.3 78 0.0017 26.6 3.5 55 92-148 35-92 (370)
12 PF02140 Gal_Lectin: Galactose 27.0 63 0.0014 20.7 2.3 17 100-118 64-80 (80)
13 KOG3507|consensus 23.3 47 0.001 20.9 1.1 15 108-122 13-27 (62)
14 cd05817 CBM20_DSP Dual-specifi 22.0 1.6E+02 0.0035 19.7 3.7 15 100-114 69-83 (100)
15 PF00878 CIMR: Cation-independ 20.0 51 0.0011 23.5 0.9 13 92-104 133-145 (145)
No 1
>KOG3394|consensus
Probab=100.00 E-value=1.9e-40 Score=280.75 Aligned_cols=148 Identities=40% Similarity=0.765 Sum_probs=124.9
Q ss_pred CCCCCCCCChHHHhhhhcCCCCceeecCCeEEEEEecCCeeEEeecCCCCCceecccceEEeeecCccccccCCCCCCcc
Q psy12809 2 SDVEYVGPGPLEFIEPLFSQKPCSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMG 81 (153)
Q Consensus 2 ~~~~~~~~~~~~ll~~l~~~~~C~~~~~g~WtYe~C~~~~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~~~~~~~ 81 (153)
+...+.+|.|.+||++|++...|+++..+|||||||||++|||||.++..+++++.++++||.|.+........ ..
T Consensus 87 ~~~~~k~~~g~eLl~pl~~~~~C~~r~~~yWtYe~ChG~hVrQyH~E~~~~~~i~~qe~yLg~~~~~~~~~~ke----~~ 162 (502)
T KOG3394|consen 87 ETKDLKEPQGDELLQPLYNDKLCLYRGEGYWTYEYCHGQHVRQYHEEPETKTGIVNQEFYLGNFLGKFTASLKE----RE 162 (502)
T ss_pred chhhhcCCChhhhhhhhhhcchheeeccceEEEEeeCCeeeeeeeccccccCcceeeeeeeeeccccchhhhhh----hh
Confidence 34556789999999999976569999999999999999999999999986666788999999998765433210 00
Q ss_pred ceeecCcccceEEEEcCCCcccCCCCCCcEEEEEEEecC-CCCcceEEeeecCceEEEEEEeccccCCCCCCC
Q psy12809 82 FKKIEGIKLPYLEINMTDGTLCDLNGEPRETRVLYMCHS-TGRHDIYSLKETSTCKYEVIILTSLLCKHPKFK 153 (153)
Q Consensus 82 ~~~~~~~~~~y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~-~~~~~I~~V~E~~tC~Y~i~v~tP~lC~~p~f~ 153 (153)
.....+...+|+++.|+|||+||+||.||+|+|||.|.+ ..++.|.||+|+++|+|+|+|.+|.||+||+||
T Consensus 163 ~~~~~~~~~~Y~s~ty~nGT~CDltg~PR~~~VrYvC~~~~~~~~I~sV~EvssC~Ye~~I~tp~LC~hP~~~ 235 (502)
T KOG3394|consen 163 AEASTDDRKPYHSETYGNGTMCDLTGRPRMVEVRYVCDESSGKHYITSVTEVSSCVYEATILTPTLCSHPLFQ 235 (502)
T ss_pred hhhhhccccceeEEEecCCCccccCCCCceEEEEEEeCCCCCcceEEEEeeccceeEEEEEecccccCccccc
Confidence 011112467899999999999999999999999999998 556999999999999999999999999999996
No 2
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=99.95 E-value=1.5e-27 Score=178.00 Aligned_cols=104 Identities=27% Similarity=0.415 Sum_probs=92.7
Q ss_pred CCCChHHHhhhhcCCCCceeecCCeEEEEEecCCeeEEeecCCCCCceecccceEEeeecCccccccCCCCCCccceeec
Q psy12809 7 VGPGPLEFIEPLFSQKPCSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMGFKKIE 86 (153)
Q Consensus 7 ~~~~~~~ll~~l~~~~~C~~~~~g~WtYe~C~~~~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
...+|.+++++| .+.|+....|.|+|++|++++|+| + .+ .||+|..+.
T Consensus 28 ~dyG~d~~f~~l--~~~c~~~~~~~Y~Y~~c~f~~v~Q---~-----~~-----~lG~~~~~~----------------- 75 (154)
T PF13015_consen 28 KDYGPDDEFRAL--KGQCFEKKIGEYTYELCPFGNVTQ---D-----ST-----SLGSFKGWE----------------- 75 (154)
T ss_pred cccCcHHHHHHh--CCeEEEeecCcEEEEEEECCCeee---c-----cc-----cceeeccce-----------------
Confidence 456899999999 568999999999999999999999 1 11 799998652
Q ss_pred CcccceEEEEcCCCcccCCCCCCcEEEEEEEecCCCCcceEEeeecCceEEEEEEeccccCCCC
Q psy12809 87 GIKLPYLEINMTDGTLCDLNGEPRETRVLYMCHSTGRHDIYSLKETSTCKYEVIILTSLLCKHP 150 (153)
Q Consensus 87 ~~~~~y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~~~~~~I~~V~E~~tC~Y~i~v~tP~lC~~p 150 (153)
+..+.|+||+.|| +|++|+|+|.+.|++. +.|++|.||++|+|.|++.||++|..+
T Consensus 76 -----~~~m~y~~G~~Cw-nGp~Rst~V~l~Cg~~--~~l~sV~Ep~~C~Y~~~~~TP~aC~~~ 131 (154)
T PF13015_consen 76 -----GSKMKYENGDKCW-NGPQRSTTVHLECGEE--NKLVSVSEPSKCEYVMEFETPAACDPS 131 (154)
T ss_pred -----eeEEEECCCcccC-CCCCcCEEEEEECCCc--ceEEEecCCCceEEEEEEeeCcccCCh
Confidence 5678999999999 9999999999999995 799999999999999999999999654
No 3
>KOG2397|consensus
Probab=99.85 E-value=1.2e-21 Score=165.68 Aligned_cols=106 Identities=28% Similarity=0.418 Sum_probs=90.0
Q ss_pred CCCChHHHhhhhcCCCCceeecCCeEEEEEecCCeeEEeecCCCCCceecccceEEeeecCccccccCCCCCCccceeec
Q psy12809 7 VGPGPLEFIEPLFSQKPCSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMGFKKIE 86 (153)
Q Consensus 7 ~~~~~~~ll~~l~~~~~C~~~~~g~WtYe~C~~~~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
...| ...++.+ +++|+.+..|-|+|.+|+++.++|... +.|.|...
T Consensus 369 ~~~g-~~e~~~~--~~~c~~~~~~~Y~Y~~c~~~~~tq~~~-------------~~~~w~~~------------------ 414 (480)
T KOG2397|consen 369 GDFG-LLEFAAL--KGQCFDRELGEYTYTVCPFKPVTQKSI-------------YGGSWSGP------------------ 414 (480)
T ss_pred cccc-HHHHHHH--hcceeeeccCcEEEEEccccccccccc-------------ccccccCC------------------
Confidence 4556 6677887 679999999999999999999999442 45555432
Q ss_pred CcccceEEEEcCCCcccCCCCCCcEEEEEEEecCCCCcceEEeeecCceEEEEEEeccccCCCCCCC
Q psy12809 87 GIKLPYLEINMTDGTLCDLNGEPRETRVLYMCHSTGRHDIYSLKETSTCKYEVIILTSLLCKHPKFK 153 (153)
Q Consensus 87 ~~~~~y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~~~~~~I~~V~E~~tC~Y~i~v~tP~lC~~p~f~ 153 (153)
.. .+|.|+||+.|| ||+.|++.|.+.|+.. ++|++|+||+.|.|.|.+.||++|..+.++
T Consensus 415 --e~--~~m~y~nG~~CW-nGP~RSa~v~v~Cg~e--~~i~sv~Ep~kCeY~~~~~tPaaC~~~~~~ 474 (480)
T KOG2397|consen 415 --EG--SVMKYENGQQCW-NGPNRSATVTVRCGLE--NEIVSVTEPSKCEYLFELVTPAACNEDFLK 474 (480)
T ss_pred --cc--ceeeecCccccc-cCCCcceeEEEEeccc--ceeeeccccccceeeeEecccccCCcchhh
Confidence 11 579999999999 9999999999999995 899999999999999999999999987653
No 4
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyses the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing []. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum []. Mutations in the gene coding for PRKCSH have been found to be involved in the development of autosomal dominant polycystic liver disease (ADPLD), but the precise role the protein has in the pathogenesis of this disease is unknown []. ; PDB: 3AIH_A.
Probab=99.84 E-value=1.2e-21 Score=131.23 Aligned_cols=79 Identities=38% Similarity=0.676 Sum_probs=44.3
Q ss_pred CCceeecCCeEEEEEecCCeeEEeecCCCCCceecccceEEeeecCccccccCCC--CCCccceeecCcccceEEEEcCC
Q psy12809 22 KPCSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSP--EGVMGFKKIEGIKLPYLEINMTD 99 (153)
Q Consensus 22 ~~C~~~~~g~WtYe~C~~~~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~y~~ 99 (153)
+.|+++..|||||||||+++|+|||.+ +++....+++||+|+......+... ....+.....+...+|+++.|+|
T Consensus 1 ~~C~~~~~g~WtYe~C~g~~v~QfH~~---~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~ 77 (81)
T PF07915_consen 1 GQCLYRSEGWWTYEFCYGKHVRQFHEE---EKDKPGQEYSLGRFDNESHFSWRDSNVDSSPPTRKSEDGSQRYISQVYSN 77 (81)
T ss_dssp --EEEEEETTEEEEEETTTEEEEE-EE---TTEE-S--EEEEEE--EEEEEEE----------S-------EEEEEEEEE
T ss_pred CcceecCCCEEEEEECCCCcEEEeccc---CCCCCcceEEeeeEecccchhhhccccccCccccccccCCccEEEEEeCC
Confidence 479999999999999999999999994 2345678999999965333222111 01111222334467899999999
Q ss_pred Cccc
Q psy12809 100 GTLC 103 (153)
Q Consensus 100 G~~C 103 (153)
||+|
T Consensus 78 Gt~C 81 (81)
T PF07915_consen 78 GTIC 81 (81)
T ss_dssp -SB-
T ss_pred CcCC
Confidence 9999
No 5
>KOG3394|consensus
Probab=99.01 E-value=4.2e-11 Score=102.63 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHhhhhcCCCCceeecCCeEEEEEecCC-eeEEeecCCCCCceecccceEEeeecCccccccCC-CCCCccce-eecCcc
Q psy12809 13 EFIEPLFSQKPCSYRLESYWTYEVCHGR-YVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDS-PEGVMGFK-KIEGIK 89 (153)
Q Consensus 13 ~ll~~l~~~~~C~~~~~g~WtYe~C~~~-~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 89 (153)
++++.+.+...|+..+.|||.|++|++. ++.|||.+.+++ ..+.+||.|.......+.. +..+.... ......
T Consensus 338 ~~~~~~~~~~~~l~~g~~~~~~ef~~~~~~~~qyhe~~ds~----~~e~~i~~~~~e~~~el~~~~s~~~~a~~~~~~~~ 413 (502)
T KOG3394|consen 338 EVIEDVEGGTTCLKGGIGWRKYEFCYGEDHVNQYHEEIDSE----EAEIIIQEYLIELDIELLKKNSKRIAAAKALGNTT 413 (502)
T ss_pred chHHHHhccceeccCCcceeccceeeccchhheeeeecccc----chhhhhhhhhhcccHHHHhccChhHHHHHHhhccc
Confidence 4555556667899999999999999998 999999997532 3566788887655443321 10000000 000112
Q ss_pred cceEEEEcCCCcccCCCCCCcEEEEEEEecCCC--Ccce-EEeeecCceEEEEEEeccccCCC
Q psy12809 90 LPYLEINMTDGTLCDLNGEPRETRVLYMCHSTG--RHDI-YSLKETSTCKYEVIILTSLLCKH 149 (153)
Q Consensus 90 ~~y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~~~--~~~I-~~V~E~~tC~Y~i~v~tP~lC~~ 149 (153)
..-+.+.+++|++|...+.+|++.|...|.+.. .+.+ +...||.+|.|++.+.+|.+|.+
T Consensus 414 ~~~i~~~~~k~~~~~~~~~~~~v~v~lk~~~s~~~~~~v~~y~l~~~~~~~il~~~~~~i~~~ 476 (502)
T KOG3394|consen 414 VSSIEHEEEKENHELQPNVDREVAVKLKLKPSLNSDNAVPQYNLEPMSCQYILGVESRDICEL 476 (502)
T ss_pred cccHHHHhhcCChhccCCCCceeeeeccCCCCCCCcccchhhhcccccceeeecccCCchhhh
Confidence 233678899999999999999999999998863 2233 45789999999999999999975
No 6
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=98.20 E-value=1.9e-05 Score=63.86 Aligned_cols=114 Identities=20% Similarity=0.348 Sum_probs=70.3
Q ss_pred HHhhhhcCCCCceeec--CCeEEEEE--ec--CC-----eeEEeecCCCCCceecccceEEeeecCccccccCCCCCCcc
Q psy12809 13 EFIEPLFSQKPCSYRL--ESYWTYEV--CH--GR-----YVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMG 81 (153)
Q Consensus 13 ~ll~~l~~~~~C~~~~--~g~WtYe~--C~--~~-----~v~Qfh~~~~~g~~~~~~~~~LG~~~~~~~~~~~~~~~~~~ 81 (153)
..|+||+++..+.... ..-|+|.| |- ++ -+.|+.+.. ++. ++||.++..-.
T Consensus 51 ~~l~pl~~~~f~~~~~~g~d~ytY~f~vC~~v~~~ss~~G~vq~d~~t--~K~-----~vIG~~n~T~v----------- 112 (278)
T PF02157_consen 51 KRLEPLFNKSFESTVGQGSDNYTYIFRVCRDVGNNSSGAGLVQIDKKT--GKY-----TVIGRYNSTPV----------- 112 (278)
T ss_dssp HHTGGGTT-EEEEEESSTTSEEEEEEESSS--SSSSSTEEEEEEETTT--TEE-----EEEEEEEEEEE-----------
T ss_pred HhcccccCCceEeeecccCcceEEEEEEeccCCCCCCcceEEEecCCC--Cce-----EEEEeeeeeEE-----------
Confidence 4677776554443332 35677765 76 22 467766543 333 48999975321
Q ss_pred ceeecCcccceEEEEcCCCcccCCC--CCCcEEEEEEEecCCCC-cceEE----eeecCceEEEEEEeccccCCC
Q psy12809 82 FKKIEGIKLPYLEINMTDGTLCDLN--GEPRETRVLYMCHSTGR-HDIYS----LKETSTCKYEVIILTSLLCKH 149 (153)
Q Consensus 82 ~~~~~~~~~~y~~~~y~~G~~Cd~t--g~~R~t~V~~~C~~~~~-~~I~~----V~E~~tC~Y~i~v~tP~lC~~ 149 (153)
.. ...-+.+.|.+|+.++-. ..+|++.|.|.|.++.. ..+.. +..+.-|.|.+++.++.+|..
T Consensus 113 ---f~--G~kwvmltY~gGd~yd~~~~~~~Rka~i~~tCdrd~~~~~~~~vse~~g~~~~C~Y~FEv~S~~AC~~ 182 (278)
T PF02157_consen 113 ---FR--GSKWVMLTYKGGDKYDSHCGKERRKAIIMFTCDRDTLAGNFTVVSEFVGKPNDCFYFFEVRSSHACPP 182 (278)
T ss_dssp ---EE--ESSEEEEEEEEEEB-SSSGGG-BEEEEEEEEE-TT-SSEEEEEEEEEETSSSEEEEEEEEEEGGG---
T ss_pred ---ec--CceEEEEEcCCCCccCCccccccceeEEEEEEcCCCCccccceeeeecCCccceEEEEEecchhcCcC
Confidence 11 234567889999998854 56799999999999742 23333 444899999999999999963
No 7
>KOG4504|consensus
Probab=97.05 E-value=0.0025 Score=52.39 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=50.5
Q ss_pred ceEEEEcCCCcccCCCCCCc-EEEEEEEecCCC--Cc-ceEEeeecCceEEEEEEeccccCC
Q psy12809 91 PYLEINMTDGTLCDLNGEPR-ETRVLYMCHSTG--RH-DIYSLKETSTCKYEVIILTSLLCK 148 (153)
Q Consensus 91 ~y~~~~y~~G~~Cd~tg~~R-~t~V~~~C~~~~--~~-~I~~V~E~~tC~Y~i~v~tP~lC~ 148 (153)
+-+.++|.||..|.-....| .|-+.|.|.++. ++ .|..+---.+|.|-+.++|+.+|.
T Consensus 164 k~L~l~y~nGS~CP~~~~~~~~TlisFvC~~e~~~~~~~i~y~gnl~~Ct~FFew~tihACp 225 (370)
T KOG4504|consen 164 KRLQLVYKNGSPCPSKSGLSYKTLISFVCRPEAGPTNRPILYSGNLQTCTLFFEWHTIHACP 225 (370)
T ss_pred ceEEEEecCCCcCCCCCCccceeeEEEEecCCCCCCCccEEEeccccceEEEEEecccccCc
Confidence 34899999999999655556 899999999984 34 789999999999999999999996
No 8
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=95.87 E-value=0.029 Score=45.34 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=44.4
Q ss_pred cceEEEEcCCCcccCCCCCCcEEEEEEEecCCCC-cceEEeeecCceEEEEEEeccccC
Q psy12809 90 LPYLEINMTDGTLCDLNGEPRETRVLYMCHSTGR-HDIYSLKETSTCKYEVIILTSLLC 147 (153)
Q Consensus 90 ~~y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~~~~-~~I~~V~E~~tC~Y~i~v~tP~lC 147 (153)
...+.+.|.+ .++ ...+|.++|.|.|+++.. ..+....+...|.|.+.+.+|.+|
T Consensus 116 ~~Gl~l~l~G--~~~-~~~~~~a~i~f~Cd~~~~~~~~~~~~~~~~~~l~l~~~t~~aC 171 (268)
T PF09451_consen 116 KEGLRLKLKG--GKW-GSNNQSAVIEFQCDKNASGPEGTSKVDWDGCVLRLEWKTKYAC 171 (268)
T ss_pred CCCEEEEEeC--CCC-CCceEEEEEEEEcCCCCCCCceeeeecCCCcEEEEEEeccccc
Confidence 3457777777 566 688999999999999754 445554788899999999999999
No 9
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=47.30 E-value=32 Score=24.33 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=36.1
Q ss_pred ceEEEEcCCCcc-cCCCCCCcEEEEEEEecCCC-CcceEEeeecCceEEEEEEeccc
Q psy12809 91 PYLEINMTDGTL-CDLNGEPRETRVLYMCHSTG-RHDIYSLKETSTCKYEVIILTSL 145 (153)
Q Consensus 91 ~y~~~~y~~G~~-Cd~tg~~R~t~V~~~C~~~~-~~~I~~V~E~~tC~Y~i~v~tP~ 145 (153)
+-.++.|+++++ ||+---+.-+.|+|...+.. +.+|+++.- + .++|..+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~-~----~~iINc~i 61 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG-T----KAIINSTI 61 (111)
T ss_pred eeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC-c----EEEEeccc
Confidence 345899999996 99875567789999998863 467888653 1 55555443
No 10
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=29.52 E-value=66 Score=20.93 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=24.5
Q ss_pred CCCcccCCCCCCcEEEEEEEecCCCCcceEEeeecCceE
Q psy12809 98 TDGTLCDLNGEPRETRVLYMCHSTGRHDIYSLKETSTCK 136 (153)
Q Consensus 98 ~~G~~Cd~tg~~R~t~V~~~C~~~~~~~I~~V~E~~tC~ 136 (153)
..+.-|- --.-|...|.|.|.+. +.....|..+..|.
T Consensus 40 ~~c~CC~-p~~~~~~~v~l~C~dg-~~~~~~v~~i~~C~ 76 (82)
T smart00041 40 HSCSCCQ-PHKTKTRQVRLRCPDG-STVKKTVMHIEECG 76 (82)
T ss_pred cCCCccC-CceeEEEEEEEECCCC-CEEEEEEEEEEecc
Confidence 3456666 4567899999999754 34555666666553
No 11
>KOG4504|consensus
Probab=28.27 E-value=78 Score=26.56 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=40.9
Q ss_pred eEEEEcCCCcccCCCCCCcEEEEEEEecCCCC---cceEEeeecCceEEEEEEeccccCC
Q psy12809 92 YLEINMTDGTLCDLNGEPRETRVLYMCHSTGR---HDIYSLKETSTCKYEVIILTSLLCK 148 (153)
Q Consensus 92 y~~~~y~~G~~Cd~tg~~R~t~V~~~C~~~~~---~~I~~V~E~~tC~Y~i~v~tP~lC~ 148 (153)
-++..|.+|+.|.-.-+..+++++|.|+.... ..+.. -.+.|.|.+.-.+-.+|.
T Consensus 35 ~~v~~~~~~~l~~d~~pk~~~~~~~fCA~s~pnTg~yfdl--~~~~~~nt~~~g~~t~~g 92 (370)
T KOG4504|consen 35 IIVLKYVDGDLCPDGIPKKSTTIRFFCAESQPNTGPYFDL--AVEDCENTFAWGTATACG 92 (370)
T ss_pred eEEEEecccccCCCCCCCcccccceeeeccCCCCcceEEe--eecccCCccccCceeccC
Confidence 35788999999996556689999999988531 23322 566788888888777775
No 12
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=27.04 E-value=63 Score=20.66 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=11.5
Q ss_pred CcccCCCCCCcEEEEEEEe
Q psy12809 100 GTLCDLNGEPRETRVLYMC 118 (153)
Q Consensus 100 G~~Cd~tg~~R~t~V~~~C 118 (153)
||.|. |.....+|.|.|
T Consensus 64 ~dpC~--~~~KyL~V~Y~C 80 (80)
T PF02140_consen 64 GDPCP--GTSKYLEVTYTC 80 (80)
T ss_dssp --SST--TS--EEEEEEEE
T ss_pred CCCCC--CCCeEEEEEEEC
Confidence 88996 677899999998
No 13
>KOG3507|consensus
Probab=23.34 E-value=47 Score=20.92 Aligned_cols=15 Identities=33% Similarity=0.959 Sum_probs=12.3
Q ss_pred CCcEEEEEEEecCCC
Q psy12809 108 EPRETRVLYMCHSTG 122 (153)
Q Consensus 108 ~~R~t~V~~~C~~~~ 122 (153)
.+|+..+.|.|++=.
T Consensus 13 ~~r~~~miYiCgdC~ 27 (62)
T KOG3507|consen 13 GPRTATMIYICGDCG 27 (62)
T ss_pred CCCcccEEEEecccc
Confidence 359999999998854
No 14
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=22.01 E-value=1.6e+02 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=12.9
Q ss_pred CcccCCCCCCcEEEE
Q psy12809 100 GTLCDLNGEPRETRV 114 (153)
Q Consensus 100 G~~Cd~tg~~R~t~V 114 (153)
|..+|..|.+|...+
T Consensus 69 ~~~~WE~g~nr~~~~ 83 (100)
T cd05817 69 NTVLWESGPNRVLRT 83 (100)
T ss_pred CCeEecCCCCEEEEe
Confidence 788999999998776
No 15
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes. Lysosomal enzymes bearing phosphomannosyl residues bind specifically to mannose-6-phosphate receptors in the golgi apparatus and the resulting receptor-ligand complex is transported to an acidic prelysosomal compartment where the low pH mediates the dissociation of the complex. This receptor also binds insulin growth factor. It contains 15 copies of a repeat.; GO: 0005215 transporter activity, 0006810 transport, 0005737 cytoplasm, 0016021 integral to membrane; PDB: 1SYO_A 1SZ0_A 1Q25_A 2KVB_A 2KVA_A 2L2G_A 2V5O_A 1GP0_A 1GP3_A 1E6F_B ....
Probab=20.02 E-value=51 Score=23.55 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=10.2
Q ss_pred eEEEEcCCCcccC
Q psy12809 92 YLEINMTDGTLCD 104 (153)
Q Consensus 92 y~~~~y~~G~~Cd 104 (153)
-+.+.|.+|+.|-
T Consensus 133 ~l~L~Y~~G~~C~ 145 (145)
T PF00878_consen 133 VLQLTYTNGDKCP 145 (145)
T ss_dssp EEEEEEES-SBES
T ss_pred EEEEEECCCCcCc
Confidence 4789999999993
Done!