RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12809
         (153 letters)



>gnl|CDD|219639 pfam07915, PRKCSH, Glucosidase II beta subunit-like protein.  The
           sequences found in this family are similar to a region
           found in the beta-subunit of glucosidase II, which is
           also known as protein kinase C substrate 80K-H (PRKCSH).
           The enzyme catalyzes the sequential removal of two
           alpha-1,3-linked glucose residues in the second step of
           N-linked oligosaccharide processing. The beta subunit is
           required for the solubility and stability of the
           heterodimeric enzyme, and is involved in retaining the
           enzyme within the endoplasmic reticulum. Mutations in
           the gene coding for PRKCSH have been found to be
           involved in the development of autosomal dominant
           polycystic liver disease (ADPLD), but the precise role
           the protein has in the pathogenesis of this disease is
           unknown. This family also includes an ER sensor for
           misfolded glycoproteins and is therefore likely to be a
           generic sugar binding domain.
          Length = 73

 Score = 64.5 bits (157), Expect = 9e-15
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 24  CSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMGFK 83
           C Y  E  WTYE C G+ VRQFHE R+         Y LGR+                  
Sbjct: 1   CFYLDEGEWTYEFCFGKKVRQFHESRKECC----SSYSLGRFKSWAESTVSKWT---KTD 53

Query: 84  KIEGIKLPYLEINMTDGTLC 103
           + E     Y+ +   +GT C
Sbjct: 54  RDENGVQRYISMIYGNGTKC 73


>gnl|CDD|184140 PRK13556, PRK13556, azoreductase; Provisional.
          Length = 208

 Score = 26.6 bits (59), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 61  YLGRWDKTLNKLQDSPEGVMGFKKI 85
           YL R  KT     + P G++G KK+
Sbjct: 114 YLNRAGKTFKYTPEGPVGLIGDKKV 138


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,600,741
Number of extensions: 653248
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 5
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)