RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12809
(153 letters)
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA
MAN; 2.10A {Homo sapiens}
Length = 124
Score = 103 bits (257), Expect = 2e-29
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 23 PCSYRLESYWTYEVCHGRYVRQFHEDRESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMGF 82
PC + + +WTYE C+GR+++Q+H + K + YLG + + ++ +
Sbjct: 4 PCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKG---EVLYLGYYQSAFDWDDETAKASKQH 60
Query: 83 KKIEGIKLPYLEINMTDGTLCDLNGEPRETRVLYMCH---STGRHDIYSLKETSTCKYEV 139
+ Y +G+ CDLNG PRE V ++C I + E +C Y +
Sbjct: 61 R-----LKRYHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVL 115
Query: 140 IILTSLLC 147
I T LC
Sbjct: 116 TIRTPRLC 123
>2kva_A Cation-independent mannose-6-phosphate receptor; transport,
lysosome, sugar binding, glyco membrane, phosphoprotein,
transmembrane, disulfide bond; NMR {Bos taurus} PDB:
2kvb_A
Length = 148
Score = 39.7 bits (92), Expect = 7e-05
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 93 LEINMTDGTLC-DLNGEPRETRVLYMCHSTGRHDIYSLKETSTCKYEVIILTSLLC 147
+++ DGT + PR T + ++C +E Y TS C
Sbjct: 92 IQLTYRDGTPYNNEKRTPRATLITFLCDRDAGVGFPEYQEEDNSTYNFRWYTSYAC 147
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate
receptor, imprinting, protein evolution, signaling
protein; NMR {Monodelphis domestica}
Length = 151
Score = 37.0 bits (85), Expect = 6e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 93 LEINMTDGTLCD-LNGEPRETRVLYMCH---STGRHDIYSLKETSTCKYEVIILTSLLCK 148
L++ DG C N ++ + ++C ++ + TC T L C+
Sbjct: 81 LQLVYDDGAPCPSKNALKYKSVISFVCTHDSGANNKPVFVSLDKQTCTLYFSWHTPLACE 140
Query: 149 HPK 151
+
Sbjct: 141 KEE 143
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like
growth factor, transport, beta barrel; 1.4A {Homo
sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D
2l29_A 2l2a_A
Length = 143
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 93 LEINMTDGTLCDL-NGEPRETRVLYMCHSTGRHD---IYSLKETSTCKYEVIILTSLLCK 148
L++ DG+ C +G ++ + ++C + + TC T L C+
Sbjct: 81 LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACE 140
Query: 149 H 149
Sbjct: 141 Q 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.024
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 83 KKIEG-IKL------PYLEINMT 98
KK++ +KL P L I T
Sbjct: 23 KKLQASLKLYADDSAPALAIKAT 45
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic
imprinting, insulin-like growth factor 2, mannose 6
receptor, protein evolution; NMR {Gallus gallus}
Length = 154
Score = 30.4 bits (68), Expect = 0.14
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 93 LEINMTDGTLCD-LNGEPRETRVLYMCHSTGRHD---IYSLKETSTCKYEVIILTSLLCK 148
L++ DG C ++ ++C S D ++ + TC TSL C+
Sbjct: 84 LKLVYEDGDPCPTDLKMKHKSYFSFVCKSDAGDDSQPVFLSFDEQTCTSYFSWHTSLACE 143
Query: 149 HPK 151
Sbjct: 144 EEV 146
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
receptor, CI-MPR; P-lectin, protein transport,S binding
protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Length = 432
Score = 31.0 bits (69), Expect = 0.14
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 95 INMTDGTLCDLNGEPRETRVLYMCHSTGRHDIYSLKETSTCKYEVIILTSLLCKHPKFK 153
+ C ++ + ++C T + + C + T+ CK FK
Sbjct: 73 LEFNTTVNCKQQNHKIQSSITFLCGKTLGTPEF--VTATDCVHYFEWRTTAACKKNIFK 129
Score = 26.8 bits (58), Expect = 3.9
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 87 GIKLPYLEINMTDGTLCDLNGEPRETRVLYMC-HSTGRHDIYSLKETSTCKYEVIILTSL 145
+ L Y++ C +G + ++C I L S C++E+ +T
Sbjct: 221 RLVLSYVKEGAGQPDFC--DGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWVTEY 278
Query: 146 LCK 148
C
Sbjct: 279 ACH 281
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane,
lysosome, transport, beta barrel, phosphorylation,
fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A*
2v5n_A*
Length = 627
Score = 30.8 bits (68), Expect = 0.18
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 93 LEINMTDGTLCD-LNGEPRETRVLYMCHSTGRHD---IYSLKETSTCKYEVIILTSLLCK 148
L++ DG+ C +G ++ + ++C + + TC T L C+
Sbjct: 81 LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACE 140
Query: 149 HPKF 152
Sbjct: 141 QATE 144
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 26.9 bits (60), Expect = 3.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 55 VKLQEYYLGRWDKTLNKLQDSPEGVMGFKKIEGIKLPYLEIN 96
L E L N+LQ PEGV F K+ +K L N
Sbjct: 157 TNLTELDLSY-----NQLQSLPEGV--FDKLTQLKDLRLYQN 191
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 26.6 bits (59), Expect = 3.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 55 VKLQEYYLGRWDKTLNKLQDSPEGVMGFKKIEGIKLPYLEIN 96
+L+E L N+LQ P+GV F K+ +K L N
Sbjct: 100 TQLKELALNT-----NQLQSLPDGV--FDKLTQLKDLRLYQN 134
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A
{Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A*
4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A*
4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A*
4ecy_A* 4ecz_A* ...
Length = 435
Score = 25.7 bits (56), Expect = 6.9
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 11 PLEFIEPLFSQKPCSYRLESYWTYEVCHGRYVRQFHEDRESK 52
++ F +K S W Y +C G + K
Sbjct: 285 TESQLQSHFGEKNGS------WLYAMCRGIEHDPVKPRQLPK 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.435
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,346,920
Number of extensions: 125050
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 14
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)