RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12809
         (153 letters)



>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 123

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 93  LEINMTDGTLCDLNGEPRETRVLYMCHSTGRHDIYSLKETSTCKYEVIILTSLLCKHPKF 152
             +       C       ++ + ++C  T     +     + C +     T+  CK   F
Sbjct: 65  SLLEFNTTVNCKQQNHKIQSSITFLCGKTLGTPEFV--TATDCVHYFEWRTTAACKKNIF 122

Query: 153 K 153
           K
Sbjct: 123 K 123


>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 32.8 bits (74), Expect = 0.007
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 93  LEINMTDGTLC-DLNGEPRETRVLYMCHSTGRHD---IYSLKETSTCKYEVIILTSLLCK 148
           L++   DG+ C   +G   ++ + ++C          +    +  TC       T L C+
Sbjct: 74  LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACE 133


>d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 151

 Score = 30.2 bits (67), Expect = 0.054
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 93  LEINMTDGTLC---DLNGEPRETRVLYMC-HSTGRHDIYSLKETSTCKYEVIILTSLLC 147
           L ++            +G      + ++C        I  L   S C++E+  +T   C
Sbjct: 93  LVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWVTEYAC 151


>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate
           receptor, extracytoplasmic domain {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 151

 Score = 28.9 bits (64), Expect = 0.15
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 23/97 (23%)

Query: 58  QEYYLGRWDKTLNKLQDSPEGVMGFKKIEGIKLPYLEINMTDGTLCD--LNGEPRETRVL 115
           +E  +GR+++T      +                ++ +    G   D     E R   V+
Sbjct: 70  KETVVGRFNETQIFQGSN----------------WIMLIYKGGDEYDNHCGREQRRAVVM 113

Query: 116 YMCHSTGRHDIYSL-----KETSTCKYEVIILTSLLC 147
             C+     D ++       +   C Y   + +SL C
Sbjct: 114 ISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 150


>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 152

 Score = 28.3 bits (62), Expect = 0.25
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 93  LEINMTDGTLCDLNGEPRETRVLYMCHSTGRHD---IYSLKETSTCKYEVIILTSLLC 147
           L +    G  C  +G  R + + + C+ T  ++            C Y     T   C
Sbjct: 95  LTLIYFGGEECS-SGFQRMSVINFECNQTAGNNGRGAPVFTGEVDCTYFFTWDTKYAC 151


>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
           {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 177

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 49  RESKKEVKLQEYYLGRWDKTLNKLQDSPEGVMGFKKIEGIKLPYLEINMTDG 100
           ++  +   +    L   +K      +     +  +++ G+ L + EI ++ G
Sbjct: 89  KQRTEIQLMVN--LLSLEKQTTVTFERLGTELKKQRLLGVDLSFYEIPISPG 138


>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter
           calcoaceticus [TaxId: 471]}
          Length = 309

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 99  DGTLCDLNGEPRETRVLYMCHST 121
            GT+ D +G+P     + + H+ 
Sbjct: 135 HGTIFDADGKPLPNAKVEIWHAN 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,730
Number of extensions: 26950
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 14
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)