BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1281
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2260 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2319
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2320 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2367
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 107 ESGWPLYAQLLIDIFKFLAPFL 128
+ GWP+YAQLLID+FK+LAPFL
Sbjct: 2070 QKGWPMYAQLLIDLFKYLAPFL 2091
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 107 ESGWPLYAQLLIDIFKFLAPFL 128
+ GWP+YAQLLID+FK+LAPFL
Sbjct: 2057 QKGWPMYAQLLIDLFKYLAPFL 2078
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 107 ESGWPLYAQLLIDIFKFLAPFL 128
+ GWP+YAQLLID+FK+LAPFL
Sbjct: 2058 QKGWPMYAQLLIDLFKYLAPFL 2079
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/108 (90%), Positives = 102/108 (94%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEAN EAIQEQITRV
Sbjct: 2246 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRV 2305
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW H+FVHCAPEIEKLF+S
Sbjct: 2306 LLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQS 2353
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 21/22 (95%)
Query: 107 ESGWPLYAQLLIDIFKFLAPFL 128
+ GWP+YAQLLID+FK+LAPFL
Sbjct: 2056 QKGWPMYAQLLIDLFKYLAPFL 2077
>sp|P87112|NOT1_SCHPO General negative regulator of transcription subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not1 PE=1 SV=1
Length = 2100
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEA----IQEQITRVLLERLIV 67
D++ RY L AIANQLRYP+SHT+Y SC LYLF ++ I+EQ+T VLLER+I
Sbjct: 1974 DSKCRYFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIIC 2033
Query: 68 NRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
NRPHPWGLLITF EL+KN Y FW H ++ EI +LF+S
Sbjct: 2034 NRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDS 2074
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC39 PE=1 SV=3
Length = 2108
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 14 EGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFA--EANTEA--IQEQITRVLLERLIVNR 69
E +Y + +I QLRYPN HT++FS +L+ +F E N + +QE I R L+R+IVN+
Sbjct: 1979 EMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNK 2038
Query: 70 PHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIE 103
PH WG+ + F +LI N D FV PEI+
Sbjct: 2039 PHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIK 2072
>sp|Q8TSP6|SYC_METAC Cysteine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=cysS PE=3 SV=1
Length = 473
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 18 LFLNAIANQLRYPNSHTHY--FSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGL 75
L+L A N+ HT Y FS +L LFA+A E I E++ R++ ER + WG
Sbjct: 385 LYLEAGKNRKVLEKVHTLYRKFSDVL-GLFAQAGKEEIPEEVFRLVEEREAARKKKDWGT 443
Query: 76 LITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
T E I+ Y D + P ++K ES
Sbjct: 444 SDTLREKIRTLGYIIQDKKE---GPNVKKAEES 473
>sp|A0QGA4|KATG_MYCA1 Catalase-peroxidase OS=Mycobacterium avium (strain 104) GN=katG
PE=3 SV=1
Length = 748
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 70 PHPWG-------LLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGW-PLYAQLLIDIF 121
P P+G +L+T I L ++P+Y+ ++ E+ F W L + + +
Sbjct: 374 PDPFGGPGRAPTMLVTDISLRESPIYRDITRRWLDHPEELADAFAKAWYKLLHRDMGPVS 433
Query: 122 KFLAPFLPQQQQQQ 135
+FL P++P+ Q Q
Sbjct: 434 RFLGPWVPEPQLWQ 447
>sp|Q73ZD5|KATG_MYCPA Catalase-peroxidase OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=katG PE=3 SV=1
Length = 748
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 70 PHPWG-------LLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLID--- 119
P P+G +L+T I L ++P+Y+ ++ E+ F W Y L D
Sbjct: 374 PDPFGGPGRAPTMLVTDISLRESPIYRDITRRWLDHPEELADAFAKAW--YKLLHRDMGL 431
Query: 120 IFKFLAPFLPQQQQQQ 135
+ +FL P++P+ Q Q
Sbjct: 432 VSRFLGPWVPEPQLWQ 447
>sp|Q67LP5|KATG_SYMTH Catalase-peroxidase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=katG PE=3 SV=1
Length = 725
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 68 NRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGW-PLYAQLLIDIFKFLAP 126
N+ H G+L T I L +PVY+ F+ E K F W L + L ++L P
Sbjct: 353 NKRHAPGMLTTDIALRVDPVYEKIARRFLENPDEFAKAFARAWFKLTHRDLGPRSRYLGP 412
Query: 127 FLPQQQ 132
+P+++
Sbjct: 413 EVPEEE 418
>sp|B5YL34|NUOD2_THEYD NADH-quinone oxidoreductase subunit D 2 OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=nuoD2 PE=3 SV=1
Length = 401
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 16 RYLFLNAIANQLRYPNSH-----THYF--SCLLLYLFAEANTEAIQEQITRVLLERLIVN 68
R F+ + +++ +SH TH + ++L+A E I + ++ RL V+
Sbjct: 100 RAKFIRTMVSEMTRLSSHLLWLATHALDIGAMTVFLYAFREREQILQFFEKICGARLTVS 159
Query: 69 RPHPWGLLITFIELIKNPVYKFWD 92
P G+ + E + + +YKF D
Sbjct: 160 YPRIGGVRVDIKEHVLDEIYKFMD 183
>sp|Q9QLI9|PA_INBLE Polymerase acidic protein OS=Influenza B virus (strain B/Lee/1940)
GN=PA PE=3 SV=1
Length = 726
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 36 YFSCLLLYLFAEANTEAIQEQITRVLLE-RLIVNRPHPW-----GLLITFIELIKNPVY- 88
+ CL+ Y+F A E + R+LL + + +R PW G+ E I N +
Sbjct: 637 FTKCLMHYVFGNAQLEGFSAESRRLLLLIQALKDRKGPWVFDLEGMYFGVEECISNNPWV 696
Query: 89 ---KFWDHEFVHCAPEIEKLFES 108
+W +E++ E K+ ES
Sbjct: 697 IQSAYWFNEWLGIEKEGSKVLES 719
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,172,792
Number of Sequences: 539616
Number of extensions: 1977819
Number of successful extensions: 19955
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 19938
Number of HSP's gapped (non-prelim): 22
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)