Query psy1281
Match_columns 144
No_of_seqs 111 out of 162
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mhq_A ADP-ribosylation factor 80.6 15 0.00051 27.1 9.5 90 13-108 33-130 (148)
2 3d1b_A RNA-induced transcripti 76.4 0.77 2.6E-05 34.0 0.9 33 92-124 24-56 (124)
3 3g2s_A C-terminal fragment of 74.3 24 0.00083 26.2 9.2 92 12-109 42-141 (149)
4 1juq_A ADP-ribosylation factor 70.3 32 0.0011 25.9 9.3 90 13-108 45-142 (171)
5 1x5b_A Signal transducing adap 57.4 57 0.0019 24.3 8.7 72 12-84 46-121 (163)
6 4flb_A Regulation of nuclear P 46.9 32 0.0011 24.1 4.8 54 7-60 48-106 (132)
7 3zyq_A Hepatocyte growth facto 44.8 63 0.0022 25.1 6.6 73 12-85 39-115 (226)
8 3gvo_A Pumilio 2, pumilio homo 37.6 30 0.001 28.0 3.8 73 2-77 39-112 (351)
9 3iot_A Maltose-binding protein 27.9 40 0.0014 27.4 3.1 7 11-17 285-291 (449)
10 1pyo_B Caspase-2; apoptosis, c 24.2 58 0.002 22.5 2.9 29 35-63 37-66 (105)
11 3ldz_A STAM-1, signal transduc 24.1 2E+02 0.0067 20.6 5.9 55 11-65 35-90 (140)
12 3d9j_A RNA-binding protein 16; 22.2 1.4E+02 0.0049 21.5 4.9 53 8-60 51-113 (145)
13 1dvp_A HRS, hepatocyte growth 21.5 1.6E+02 0.0055 22.3 5.3 54 12-65 36-90 (220)
14 2ql9_B Caspase-7; cysteine pro 21.2 74 0.0025 21.5 2.9 27 35-61 33-60 (97)
15 4f52_E Glomulin; cullin-ring E 20.9 55 0.0019 29.4 2.8 30 2-31 388-417 (596)
16 1sz9_A PCF11 protein; RNA poly 20.2 1.9E+02 0.0065 20.9 5.2 49 9-59 53-107 (144)
No 1
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.64 E-value=15 Score=27.14 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHH-HHHHHHHhh-cCC-----C-CchhHHHHHHHHHh
Q psy1281 13 TEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQI-TRVLLERLI-VNR-----P-HPWGLLITFIELIK 84 (144)
Q Consensus 13 ~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI-tRVLlERli-v~r-----P-HPWGllitfiELik 84 (144)
++|-...+.||...|.++|.|+-.++-.+|......-+..++.+| .+-++++++ ... + .|--+.--.+||+.
T Consensus 33 ~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 33 PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 477888899999999999999999999999988765445564444 678877765 212 1 24567777788886
Q ss_pred CCCccccccccccccHHHHHHHHh
Q psy1281 85 NPVYKFWDHEFVHCAPEIEKLFES 108 (144)
Q Consensus 85 n~~y~Fw~~pFv~~~PEi~~lf~~ 108 (144)
. |...|- ..|.|...++.
T Consensus 113 ~-----W~~~f~-~~p~i~~~y~~ 130 (148)
T 1mhq_A 113 S-----WTVWFP-EDIKIRDAYQM 130 (148)
T ss_dssp H-----HHHHCT-TCHHHHHHHHH
T ss_pred H-----HHHHcC-CCchHHHHHHH
Confidence 4 666664 35665444443
No 2
>3d1b_A RNA-induced transcriptional silencing complex protein TAS3; all alpha motif, RITS complex, immunoglobulin fold, cell cycle; 1.70A {Schizosaccharomyces pombe} PDB: 3d1d_A
Probab=76.41 E-value=0.77 Score=34.02 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=29.2
Q ss_pred ccccccccHHHHHHHHhHHHHHHHHHHhHHhhh
Q psy1281 92 DHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFL 124 (144)
Q Consensus 92 ~~pFv~~~PEi~~lf~~v~~~~~q~l~~~~~~~ 124 (144)
++.|+...|.-.+.+.++.+++++||||.+.-+
T Consensus 24 ~lsf~q~~~sc~~~~~~~iphy~~~lid~sq~~ 56 (124)
T 3d1b_A 24 SLSFFQTNSSCAEALVKVIPHYHNKLIDFSQVL 56 (124)
T ss_dssp TSHHHHTCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred hhHHHhcCHHHHHHHHHhchHHHHHHhhHHHHH
Confidence 468999999999999999999999999987543
No 3
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.25 E-value=24 Score=26.16 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHH-HHHHHHHHHHHhh---cCC----CCchhHHHHHHHHH
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAI-QEQITRVLLERLI---VNR----PHPWGLLITFIELI 83 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~I-qEqItRVLlERli---v~r----PHPWGllitfiELi 83 (144)
+++|-...+.+|...|.++|.|+-.++-.++..-...-+..+ .|+-.|-.+++++ ..+ ..|--+.--.+||+
T Consensus 42 ~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 42 DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 457788889999999999999999999988888766544455 4444666766654 211 12346667777777
Q ss_pred hCCCccccccccccccHHHHHHHHhH
Q psy1281 84 KNPVYKFWDHEFVHCAPEIEKLFESG 109 (144)
Q Consensus 84 kn~~y~Fw~~pFv~~~PEi~~lf~~v 109 (144)
.. |...|- ..|.|...++.+
T Consensus 122 ~~-----W~~~f~-~~p~i~~~Y~~L 141 (149)
T 3g2s_A 122 YS-----WTVGLP-EEVKIAEAYQML 141 (149)
T ss_dssp HH-----HHHHCT-TCHHHHHHHHHH
T ss_pred HH-----HHHHhC-CCchHHHHHHHH
Confidence 64 666663 356666555544
No 4
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.31 E-value=32 Score=25.90 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHH-HHHHHHHHHHhh---cCCC----CchhHHHHHHHHHh
Q psy1281 13 TEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQ-EQITRVLLERLI---VNRP----HPWGLLITFIELIK 84 (144)
Q Consensus 13 ~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~Iq-EqItRVLlERli---v~rP----HPWGllitfiELik 84 (144)
+++-...+.+|...|.++|.|+-.++-.+|..-...-+..++ |.-.+-++++++ ..++ .|=-+.--.+||+.
T Consensus 45 ~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 467778899999999999999999999999888765444555 444555555543 2221 24466667777776
Q ss_pred CCCccccccccccccHHHHHHHHh
Q psy1281 85 NPVYKFWDHEFVHCAPEIEKLFES 108 (144)
Q Consensus 85 n~~y~Fw~~pFv~~~PEi~~lf~~ 108 (144)
. |...|-. .|.|...++.
T Consensus 125 ~-----W~~~f~~-~~~i~~~y~~ 142 (171)
T 1juq_A 125 S-----WTMALPE-EAKIKDAYHM 142 (171)
T ss_dssp H-----HHHHCTT-CHHHHHHHHH
T ss_pred H-----HHHHcCC-CcHHHHHHHH
Confidence 4 6666543 4554444333
No 5
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.41 E-value=57 Score=24.27 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHH-HHHHHHHh---hcCCCCchhHHHHHHHHHh
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQI-TRVLLERL---IVNRPHPWGLLITFIELIK 84 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI-tRVLlERl---iv~rPHPWGllitfiELik 84 (144)
++++-...+.+|...|.++|.|+-.++-.++......-+..++.+| .|-.++++ +..++|| -+.--.+||+.
T Consensus 46 ~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~-~Vk~kil~li~ 121 (163)
T 1x5b_A 46 TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHP-KVCEKLKSLMV 121 (163)
T ss_dssp SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCH-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCH-HHHHHHHHHHH
Confidence 3467778889999999999999999999888887665334555444 46665544 3323333 34444445543
No 6
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=46.87 E-value=32 Score=24.11 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHhccChHHH---HHHHHHHHHhhcCCCch--HHHHHHHHHHHhhhcChhHHHHHHHHH
Q psy1281 7 FAVDLDTEGR---YLFLNAIANQLRYPNSH--THYFSCLLLYLFAEANTEAIQEQITRV 60 (144)
Q Consensus 7 L~~~ld~E~R---y~ll~aianqLRYPN~H--T~~Fs~~ll~LF~~~~~~~IqEqItRV 60 (144)
-+...+++-| -|++++|+-+-+-++.. ...|..++...|....+++.++.+.|+
T Consensus 48 ~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~l 106 (132)
T 4flb_A 48 WLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERI 106 (132)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHH
T ss_pred HHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445555543 57788999888776643 335777777888766556677776654
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.79 E-value=63 Score=25.09 Aligned_cols=73 Identities=11% Similarity=0.214 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHH-HHHHHHHh---hcCCCCchhHHHHHHHHHhC
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQI-TRVLLERL---IVNRPHPWGLLITFIELIKN 85 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI-tRVLlERl---iv~rPHPWGllitfiELikn 85 (144)
++++-...+.||...|.++|.|+-..+-.+|..-...-+..++.+| .+-.++++ +...+| --+.--.+||+..
T Consensus 39 ~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~-~~Vk~kil~li~~ 115 (226)
T 3zyq_A 39 GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVE-VNVRNKILYLIQA 115 (226)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Confidence 4566778899999999999999999998888877654333344333 45544443 332333 3455566666653
No 8
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=37.64 E-value=30 Score=27.97 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=46.2
Q ss_pred hHHHHHHhccChHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHhhcCCCCchhHHH
Q psy1281 2 DIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTH-YFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLI 77 (144)
Q Consensus 2 ~i~~~L~~~ld~E~Ry~ll~aianqLRYPN~HT~-~Fs~~ll~LF~~~~~~~IqEqItRVLlERliv~rPHPWGlli 77 (144)
.+++.++...++|.|-.+++.+..++ ...-|+ |-++++..+|..++ ++.+..|.+.+...+..---|+.|..+
T Consensus 39 R~lQ~~l~~~~~~~~~~i~~ei~~~~--~~L~~d~~gn~vvQklle~~~-~~~~~~i~~~i~g~~~~l~~~~~G~rv 112 (351)
T 3gvo_A 39 RFIQQKLERATPAERQIVFNEILQAA--YQLMTDVFGNYVIQKFFEFGS-LDQKLALATRIRGHVLPLALQMYGCRV 112 (351)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHGGGH--HHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHHHTTCHHHHHTSTTHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhH--HHHHhChhhhHHHHHHHhhCC-HHHHHHHHHHHHhhHHHHhhCHHhHHH
Confidence 36788889999999999999988764 333333 55566777777665 345555555554444333345555443
No 9
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=27.94 E-value=40 Score=27.41 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=3.3
Q ss_pred cChHHHH
Q psy1281 11 LDTEGRY 17 (144)
Q Consensus 11 ld~E~Ry 17 (144)
.++|+..
T Consensus 285 ~s~e~~~ 291 (449)
T 3iot_A 285 LTDEGLE 291 (449)
T ss_dssp SSHHHHH
T ss_pred cCHHHHH
Confidence 3455543
No 10
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=24.24 E-value=58 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhh-cChhHHHHHHHHHHHH
Q psy1281 35 HYFSCLLLYLFAE-ANTEAIQEQITRVLLE 63 (144)
Q Consensus 35 ~~Fs~~ll~LF~~-~~~~~IqEqItRVLlE 63 (144)
.||...|...|.+ +...+|-++.|+|--+
T Consensus 37 SwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~ 66 (105)
T 1pyo_B 37 SWYIEALAQVFSERACDMHVADMLVKVNAL 66 (105)
T ss_dssp EHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4999999999987 4557888888886443
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=24.12 E-value=2e+02 Score=20.60 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=40.5
Q ss_pred cChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHH-HHHHHHHHHHh
Q psy1281 11 LDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQ-EQITRVLLERL 65 (144)
Q Consensus 11 ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~Iq-EqItRVLlERl 65 (144)
.+++|-.-.+.||...|.+.|.|+-..+-.++......-+..++ |.-.|-.++.+
T Consensus 35 ~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 35 QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 35678888999999999999999999998888888665444454 33345555443
No 12
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.22 E-value=1.4e+02 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=35.5
Q ss_pred HhccChHHH---HHHHHHHHHhhcC-----CCchHHHHHHHHHHHhhhc--ChhHHHHHHHHH
Q psy1281 8 AVDLDTEGR---YLFLNAIANQLRY-----PNSHTHYFSCLLLYLFAEA--NTEAIQEQITRV 60 (144)
Q Consensus 8 ~~~ld~E~R---y~ll~aianqLRY-----PN~HT~~Fs~~ll~LF~~~--~~~~IqEqItRV 60 (144)
+...+++-| -|++++|+.+.+. .+.-+..|+..+..+|... ..++.+.-|.|+
T Consensus 51 i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rL 113 (145)
T 3d9j_A 51 IQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRV 113 (145)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHH
T ss_pred HHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555544 4788999999997 3356678888888888653 225666666554
No 13
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.51 E-value=1.6e+02 Score=22.34 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHH-HHHHHHHHHh
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQE-QITRVLLERL 65 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqE-qItRVLlERl 65 (144)
++++-...+.+|...|.++|.|+-.+.-.++......-+..++. +-.+-+++.+
T Consensus 36 ~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 36 KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 34566678889999999999999999888888776654444543 3345555543
No 14
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=21.22 E-value=74 Score=21.48 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhh-cChhHHHHHHHHHH
Q psy1281 35 HYFSCLLLYLFAE-ANTEAIQEQITRVL 61 (144)
Q Consensus 35 ~~Fs~~ll~LF~~-~~~~~IqEqItRVL 61 (144)
.||...+...|.+ +.+.+|.++.|+|-
T Consensus 33 SwfIq~Lc~~l~~~~~~~dl~~ilt~Vn 60 (97)
T 2ql9_B 33 SWFVQALCSILEEHGKDLEIMQILTRVN 60 (97)
T ss_dssp EHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CeeHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3999999999986 34578888888753
No 15
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.93 E-value=55 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=26.8
Q ss_pred hHHHHHHhccChHHHHHHHHHHHHhhcCCC
Q psy1281 2 DIFLNFAVDLDTEGRYLFLNAIANQLRYPN 31 (144)
Q Consensus 2 ~i~~~L~~~ld~E~Ry~ll~aianqLRYPN 31 (144)
.++...++..++||||.++..+.+.-.+|+
T Consensus 388 ~vl~~~I~~~~~e~R~~iL~~LL~~~~~~~ 417 (596)
T 4f52_E 388 AMLQLYINKLDSQGKYTLFRCLLNTSNHSG 417 (596)
T ss_dssp HHHHHHHHHBCHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCChH
Confidence 467788899999999999999999998885
No 16
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.25 E-value=1.9e+02 Score=20.93 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=30.2
Q ss_pred hccChHHH---HHHHHHHHHhhcCCCchHHHHHHHHHHHhhhc---ChhHHHHHHHH
Q psy1281 9 VDLDTEGR---YLFLNAIANQLRYPNSHTHYFSCLLLYLFAEA---NTEAIQEQITR 59 (144)
Q Consensus 9 ~~ld~E~R---y~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~---~~~~IqEqItR 59 (144)
....++-| -|++++|+.+.+-| -+..|+..+..+|.+. .++.++.-+.|
T Consensus 53 ~k~~p~~KL~~LYL~DsIvkN~g~~--y~~~F~~~l~~~f~~~~~~~d~~~r~k~~r 107 (144)
T 1sz9_A 53 EKCMPKQKLYAFYALDSICKNVGSP--YTIYFSRNLFNLYKRTYLLVDNTTRTKLIN 107 (144)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTCTT--HHHHHHTTHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34455543 57889999887644 4667887777777654 12444444443
Done!