Query psy1281
Match_columns 144
No_of_seqs 111 out of 162
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:21:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mhqa_ a.118.9.2 (A:) ADP-rib 72.9 12 0.00085 25.7 9.8 92 12-109 32-131 (143)
2 d1dvpa1 a.118.9.2 (A:1-145) Hr 69.9 6.8 0.00049 26.9 6.6 74 12-85 36-112 (145)
3 d1ujka_ a.118.9.2 (A:) ADP-rib 46.5 28 0.002 23.7 6.4 93 11-109 38-138 (145)
4 d2fbqa2 a.121.1.1 (A:81-214) T 37.3 51 0.0037 21.6 7.6 37 96-132 40-76 (134)
5 d1elka_ a.118.9.2 (A:) Tom1 pr 36.7 58 0.0042 22.1 9.2 74 11-84 42-122 (153)
6 d1kwma2 d.58.3.1 (A:1A-95A) Pr 29.6 13 0.00094 23.5 2.0 37 76-112 23-70 (95)
7 d1juqa_ a.118.9.2 (A:) ADP-rib 29.3 78 0.0057 21.4 9.4 74 12-85 33-114 (151)
8 d2hkja1 a.156.1.3 (A:229-306) 28.7 5.9 0.00043 24.5 0.1 18 69-86 2-20 (78)
9 d1uhua_ a.61.1.6 (A:) Product 23.7 23 0.0017 24.0 2.5 31 64-100 66-102 (105)
10 d1m8za_ a.118.1.8 (A:) Pumilio 22.8 29 0.0021 25.3 3.2 70 3-74 182-251 (339)
11 d2vglb_ a.118.1.10 (B:) Adapti 20.6 1.3E+02 0.0092 23.6 7.0 53 4-57 355-408 (579)
12 d1h6pa_ a.146.1.1 (A:) TRF2 {H 20.4 53 0.0039 24.4 4.2 66 59-132 133-198 (203)
No 1
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.87 E-value=12 Score=25.67 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHH-HHHHHHHHHHHhhc--C-C---C-CchhHHHHHHHHH
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAI-QEQITRVLLERLIV--N-R---P-HPWGLLITFIELI 83 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~I-qEqItRVLlERliv--~-r---P-HPWGllitfiELi 83 (144)
+++|-...+.+|...|+++|.|+-+++-.++......-+..+ .|..++-.+++++- . + | .|--+.--.++|+
T Consensus 32 ~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li 111 (143)
T d1mhqa_ 32 DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (143)
T ss_dssp SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 466777899999999999999999999888888766433444 55557777776642 1 1 1 2344555666666
Q ss_pred hCCCccccccccccccHHHHHHHHhH
Q psy1281 84 KNPVYKFWDHEFVHCAPEIEKLFESG 109 (144)
Q Consensus 84 kn~~y~Fw~~pFv~~~PEi~~lf~~v 109 (144)
.+ |...|- .-|++..+++.+
T Consensus 112 ~~-----Wa~~f~-~~~~~~~~y~~L 131 (143)
T d1mhqa_ 112 FS-----WTVWFP-EDIKIRDAYQML 131 (143)
T ss_dssp HH-----HHHHCT-TCHHHHHHHHHH
T ss_pred HH-----HHHHcC-CCchHHHHHHHH
Confidence 53 555553 356665554444
No 2
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=69.92 E-value=6.8 Score=26.86 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHH-HHHHHHHhh--cCCCCchhHHHHHHHHHhC
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQI-TRVLLERLI--VNRPHPWGLLITFIELIKN 85 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI-tRVLlERli--v~rPHPWGllitfiELikn 85 (144)
++++-...+.+|...|.++|.|+.+.+-.++..-...-+..+..+| .+-+++++. +.++.|=-+.--.+|++.+
T Consensus 36 ~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (145)
T d1dvpa1 36 KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (145)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4556678899999999999999999998888766554344555555 666666642 2222233455555666653
No 3
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.53 E-value=28 Score=23.72 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred cChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHH-HHHHHHHHHHHhh---cCC---C-CchhHHHHHHHH
Q psy1281 11 LDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAI-QEQITRVLLERLI---VNR---P-HPWGLLITFIEL 82 (144)
Q Consensus 11 ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~I-qEqItRVLlERli---v~r---P-HPWGllitfiEL 82 (144)
.++++-...+.+|...|.++|.|+-+++-.++..-...-+..+ +|...+-.+.++. ..+ + .|--+.--.++|
T Consensus 38 ~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~l 117 (145)
T d1ujka_ 38 EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILEL 117 (145)
T ss_dssp SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHH
Confidence 4567778899999999999999999998888877655433444 5555677766652 211 1 122344456666
Q ss_pred HhCCCccccccccccccHHHHHHHHhH
Q psy1281 83 IKNPVYKFWDHEFVHCAPEIEKLFESG 109 (144)
Q Consensus 83 ikn~~y~Fw~~pFv~~~PEi~~lf~~v 109 (144)
+.+ |...|-+ -|.+...++.+
T Consensus 118 i~~-----W~~~fp~-~~~~~~~Y~~L 138 (145)
T d1ujka_ 118 LYS-----WTVGLPE-EVKIAEAYQML 138 (145)
T ss_dssp HHH-----HHHHCTT-CHHHHHHHHHH
T ss_pred HHH-----HHHHCCC-chHHHHHHHHH
Confidence 654 5555532 35555444443
No 4
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.28 E-value=51 Score=21.65 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHhHHHHHHHHHHhHHhhhcccchhHH
Q psy1281 96 VHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQ 132 (144)
Q Consensus 96 v~~~PEi~~lf~~v~~~~~q~l~~~~~~~~~~l~~~~ 132 (144)
..-++++++++..-..-+++.++|.++=+-|.+...|
T Consensus 40 ~ep~~~lr~~~~~~~~p~~~rf~~al~~alP~l~~~e 76 (134)
T d2fbqa2 40 SQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIE 76 (134)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3347889999999888899999999998889987664
No 5
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.67 E-value=58 Score=22.10 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=48.4
Q ss_pred cChHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHhh-hcChhHHHHHHHHHHHHHhh----cCCCC-chhHHHHHHHHH
Q psy1281 11 LDTEGRYLFLNAIANQL-RYPNSHTHYFSCLLLYLFA-EANTEAIQEQITRVLLERLI----VNRPH-PWGLLITFIELI 83 (144)
Q Consensus 11 ld~E~Ry~ll~aianqL-RYPN~HT~~Fs~~ll~LF~-~~~~~~IqEqItRVLlERli----v~rPH-PWGllitfiELi 83 (144)
.+++|-...+.|+...| .+.|.|+.+++-.++..-. +++..--+|...+-.+++++ ..++. |=-+.--.++|+
T Consensus 42 ~~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li 121 (153)
T d1elka_ 42 ETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLI 121 (153)
T ss_dssp HSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 35677788999999998 6789999999866666554 44544446666888887753 23332 222444555555
Q ss_pred h
Q psy1281 84 K 84 (144)
Q Consensus 84 k 84 (144)
.
T Consensus 122 ~ 122 (153)
T d1elka_ 122 Q 122 (153)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>d1kwma2 d.58.3.1 (A:1A-95A) Procarboxypeptidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.59 E-value=13 Score=23.53 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCcccccccc-----------ccccHHHHHHHHhHHHH
Q psy1281 76 LITFIELIKNPVYKFWDHEF-----------VHCAPEIEKLFESGWPL 112 (144)
Q Consensus 76 litfiELikn~~y~Fw~~pF-----------v~~~PEi~~lf~~v~~~ 112 (144)
+-.+-+|-++..++||..|- |.-+|+--.-|+...+.
T Consensus 23 ~~~L~~L~~~~~ldfW~~~s~~~~~~g~~vdv~V~p~~~~~~~~~L~~ 70 (95)
T d1kwma2 23 INIIRELASTTQIDFWKPDSVTQIKPHSTVDFRVKAEDTVTVENVLKQ 70 (95)
T ss_dssp HHHHHHHHHHSCEEEEESSSGGGCCSSEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHhccCceEecCCCCccccCCCCeEEEEECHHHHHHHHHHHHH
Confidence 44556777778999998774 34456554555555443
No 7
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.27 E-value=78 Score=21.37 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHH-HHHHHHHHHHHhh---cCC---CC-chhHHHHHHHHH
Q psy1281 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAI-QEQITRVLLERLI---VNR---PH-PWGLLITFIELI 83 (144)
Q Consensus 12 d~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~I-qEqItRVLlERli---v~r---PH-PWGllitfiELi 83 (144)
+++|-.-.+.+|...|.++|.|+-..+-.++..-...-+..+ +|...+-.++.+. ..+ |. |=-+.--.++++
T Consensus 33 ~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll 112 (151)
T d1juqa_ 33 ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 112 (151)
T ss_dssp STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHH
Confidence 566777889999999999999999988888877665434455 4444666665543 222 22 333545566666
Q ss_pred hC
Q psy1281 84 KN 85 (144)
Q Consensus 84 kn 85 (144)
.+
T Consensus 113 ~~ 114 (151)
T d1juqa_ 113 YS 114 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=28.68 E-value=5.9 Score=24.48 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=13.0
Q ss_pred CCCchhHH-HHHHHHHhCC
Q psy1281 69 RPHPWGLL-ITFIELIKNP 86 (144)
Q Consensus 69 rPHPWGll-itfiELikn~ 86 (144)
+|||+|+- -.+.+++++.
T Consensus 2 kPhP~~v~~~~l~~~l~~~ 20 (78)
T d2hkja1 2 KPHPYGVDREEIKILINNL 20 (78)
T ss_dssp CCCGGGCCHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHhc
Confidence 79999973 3566777754
No 9
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=23.67 E-value=23 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=24.1
Q ss_pred HhhcCCCCchh------HHHHHHHHHhCCCccccccccccccH
Q psy1281 64 RLIVNRPHPWG------LLITFIELIKNPVYKFWDHEFVHCAP 100 (144)
Q Consensus 64 Rliv~rPHPWG------llitfiELikn~~y~Fw~~pFv~~~P 100 (144)
+.+|.+|.||| -+.||..|..||- |.+|+-|
T Consensus 66 ~~~v~~~G~~gHpDqvPYI~tw~~La~~PP------pw~k~~~ 102 (105)
T d1uhua_ 66 KAIVFQDGPGSHPDQQPYITVWQDLVQNSP------PWIKSGP 102 (105)
T ss_dssp HHHHTCSSTTSCTTTHHHHHHHHHHHHTCC------TTTSCCC
T ss_pred HHHhhcCCCCCCCCcCcchHHHHHHHHCCC------hhhhcCC
Confidence 45678999999 7889999999983 5666543
No 10
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.77 E-value=29 Score=25.31 Aligned_cols=70 Identities=7% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHhhcCCCCchh
Q psy1281 3 IFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWG 74 (144)
Q Consensus 3 i~~~L~~~ld~E~Ry~ll~aianqLRYPN~HT~~Fs~~ll~LF~~~~~~~IqEqItRVLlERliv~rPHPWG 74 (144)
+++.++...++|.+.-++.++.+++-.- +++.|=++++..++...+ ...++.|.+.+...+..---|++|
T Consensus 182 vlq~~l~~~~~~~~~~l~~~l~~~~~~L-~~~~~G~~vvq~~l~~~~-~~~~~~i~~~l~~~~~~l~~~k~g 251 (339)
T d1m8za_ 182 VIQRILEHCLPDQTLPILEELHQHTEQL-VQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQHKFA 251 (339)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHTHHHH-TTSTTHHHHHHHHHHHSC-HHHHHHHHHHHTTCHHHHHTSTTH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHcCC-HHHHHHHHHHHHhhHHHHHcchhH
Confidence 4567777788888888888887654332 345566667777776654 456666666666555544455666
No 11
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=1.3e+02 Score=23.57 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=37.4
Q ss_pred HHHHHhccChHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHhhhcChhHHHHHH
Q psy1281 4 FLNFAVDLDTEGRYLFLNAIANQL-RYPNSHTHYFSCLLLYLFAEANTEAIQEQI 57 (144)
Q Consensus 4 ~~~L~~~ld~E~Ry~ll~aianqL-RYPN~HT~~Fs~~ll~LF~~~~~~~IqEqI 57 (144)
+...+.+.|.+.|...+.+|.+=- ++|. ...|+...++.+.....+..++|.+
T Consensus 355 L~~y~~~~d~~~~~~ai~aI~~la~~~~~-~~~~~i~~Ll~ll~~~~~~v~~e~i 408 (579)
T d2vglb_ 355 LKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SAERCVSTLLDLIQTKVNYVVQEAI 408 (579)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHhCCchhHHHHHH
Confidence 344567888999998888876543 4554 4568888999999877655555554
No 12
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=53 Score=24.42 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhCCCccccccccccccHHHHHHHHhHHHHHHHHHHhHHhhhcccchhHH
Q psy1281 59 RVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDIFKFLAPFLPQQQ 132 (144)
Q Consensus 59 RVLlERliv~rPHPWGllitfiELikn~~y~Fw~~pFv~~~PEi~~lf~~v~~~~~q~l~~~~~~~~~~l~~~~ 132 (144)
-.+|||+....+-+=++..-+.-+|+-++- .+||++.-. |...-+.+-+.+..+++.=+|||.+.-
T Consensus 133 ~eil~r~f~~~~~~~~lr~kL~~II~~Kd~---~H~~lq~FS-----y~~~~~kI~~fv~~~~~~~~~fLl~~A 198 (203)
T d1h6pa_ 133 SKILKKHMSKDPTTQKLRNDLLNIIREKNL---AHPVIQNFS-----YETFQQKMLRFLESHLDDAEPYLLTMA 198 (203)
T ss_dssp HHHHHHHC---------CHHHHHHHHHTTT---CTTSSCCCC-----HHHHHHHHHHHHHHTSCCCCCHHHHHH
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhcCC---CcHHHHhcC-----HHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 346789998777777777777777754432 588888765 567777777888888888899999873
Done!