Your job contains 1 sequence.
>psy1281
MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLYAQLLIDI
FKFLAPFLPQQQQQQQQSASFPLA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1281
(144 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1308009 - symbol:Cnot1 "CCR4-NOT transcription comple... 542 2.7e-52 1
UNIPROTKB|E1BXD4 - symbol:LOC100858397 "Uncharacterized p... 542 1.1e-50 1
UNIPROTKB|F1MHU9 - symbol:CNOT1 "Uncharacterized protein"... 542 1.3e-50 1
UNIPROTKB|F1RFU3 - symbol:CNOT1 "Uncharacterized protein"... 542 1.3e-50 1
MGI|MGI:2442402 - symbol:Cnot1 "CCR4-NOT transcription co... 542 1.3e-50 1
UNIPROTKB|A5YKK6 - symbol:CNOT1 "CCR4-NOT transcription c... 542 1.3e-50 1
UNIPROTKB|G3V7M0 - symbol:Cnot1 "RCG39079" species:10116 ... 542 1.3e-50 1
FB|FBgn0085436 - symbol:Not1 "Not1" species:7227 "Drosoph... 538 3.8e-50 1
ZFIN|ZDB-GENE-040915-1 - symbol:cnot1 "CCR4-NOT transcrip... 533 1.2e-49 1
WB|WBGene00002845 - symbol:let-711 species:6239 "Caenorha... 436 2.8e-39 1
DICTYBASE|DDB_G0276029 - symbol:DDB_G0276029 "putative CC... 417 2.8e-37 1
GENEDB_PFALCIPARUM|PF11_0049 - symbol:PF11_0049 "hypothet... 380 3.4e-33 1
UNIPROTKB|Q8IIW4 - symbol:PF11_0049 "NOT family protein, ... 380 3.4e-33 1
POMBASE|SPAC20G8.06 - symbol:not1 "CCR4-Not complex subun... 299 7.8e-25 1
ASPGD|ASPL0000078074 - symbol:AN4965 species:162425 "Emer... 264 4.6e-21 1
CGD|CAL0001252 - symbol:CDC39 species:5476 "Candida albic... 247 2.5e-19 1
UNIPROTKB|Q59R01 - symbol:CDC39 "Potential mRNA deadenyla... 247 2.5e-19 1
SGD|S000000689 - symbol:CDC39 "Component of the CCR4-NOT ... 186 8.0e-13 1
>RGD|1308009 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005778 "peroxisomal
membrane" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
RGD:1308009 GO:GO:0005778 GO:GO:0000932 InterPro:IPR007196
Pfam:PF04054 UniGene:Rn.56498 EMBL:BC086325 IPI:IPI00359049
STRING:Q5RK32 PRIDE:Q5RK32 UCSC:RGD:1308009 HOVERGEN:HBG106203
InParanoid:Q5RK32 ArrayExpress:Q5RK32 Genevestigator:Q5RK32
Uniprot:Q5RK32
Length = 455
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 327 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 386
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 387 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 434
>UNIPROTKB|E1BXD4 [details] [associations]
symbol:LOC100858397 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:AADN02051617 EMBL:AADN02051618
IPI:IPI00596498 Ensembl:ENSGALT00000040121 ArrayExpress:E1BXD4
Uniprot:E1BXD4
Length = 2129
Score = 542 (195.9 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2001 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2060
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2061 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2108
>UNIPROTKB|F1MHU9 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:DAAA02046541 IPI:IPI00708264
Ensembl:ENSBTAT00000027695 Uniprot:F1MHU9
Length = 2371
Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2243 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2302
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2303 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2350
>UNIPROTKB|F1RFU3 [details] [associations]
symbol:CNOT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005778 "peroxisomal membrane" evidence=IEA]
GO:GO:0005778 GO:GO:0000932 CTD:23019 KO:K12604 OMA:YLKARAP
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:FP236140 RefSeq:XP_003127000.1
Ensembl:ENSSSCT00000003099 GeneID:100511993 KEGG:ssc:100511993
Uniprot:F1RFU3
Length = 2375
Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354
>MGI|MGI:2442402 [details] [associations]
symbol:Cnot1 "CCR4-NOT transcription complex, subunit 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010606 "positive regulation of cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033147 "negative regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0042974
"retinoic acid receptor binding" evidence=ISO] [GO:0048387
"negative regulation of retinoic acid receptor signaling pathway"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
[GO:2000036 "regulation of stem cell maintenance" evidence=ISO]
MGI:MGI:2442402 GO:GO:0006355 GO:GO:0006351 GO:GO:0005778
GO:GO:0000932 CTD:23019 eggNOG:COG5103 HOVERGEN:HBG060834 KO:K12604
OMA:YLKARAP OrthoDB:EOG495ZQV ChiTaRS:CNOT1 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 EMBL:AC113951
EMBL:AC127300 EMBL:AK031357 EMBL:AK034776 EMBL:AK048177
EMBL:AK143651 EMBL:BC018281 EMBL:BC158073 EMBL:AK129258
IPI:IPI00672703 IPI:IPI00673465 IPI:IPI00880243 IPI:IPI00881912
RefSeq:NP_835179.1 UniGene:Mm.259220 ProteinModelPortal:Q6ZQ08
DIP:DIP-46845N IntAct:Q6ZQ08 STRING:Q6ZQ08 PhosphoSite:Q6ZQ08
PaxDb:Q6ZQ08 PRIDE:Q6ZQ08 Ensembl:ENSMUST00000098473 GeneID:234594
KEGG:mmu:234594 UCSC:uc009myy.1 UCSC:uc009myz.2 UCSC:uc009mzb.2
GeneTree:ENSGT00390000014869 NextBio:382234 Bgee:Q6ZQ08
CleanEx:MM_CNOT1 Genevestigator:Q6ZQ08 Uniprot:Q6ZQ08
Length = 2375
Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2306
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2354
>UNIPROTKB|A5YKK6 [details] [associations]
symbol:CNOT1 "CCR4-NOT transcription complex subunit 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS;IDA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IDA] [GO:2000036 "regulation of
stem cell maintenance" evidence=IMP] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=IDA] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0042974 "retinoic acid receptor binding" evidence=IDA]
[GO:0048387 "negative regulation of retinoic acid receptor
signaling pathway" evidence=IDA] [GO:0030331 "estrogen receptor
binding" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005778 "peroxisomal
membrane" evidence=IDA] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 GO:GO:0005829 GO:GO:0006355 GO:GO:0006351
GO:GO:0005778 GO:GO:0000932 GO:GO:0000289 EMBL:AL117492
EMBL:BX537840 EMBL:CR749237 EMBL:EF553522 EMBL:AC009118
EMBL:AC010287 EMBL:BC000779 EMBL:BC024317 EMBL:BC040523
EMBL:AB023224 EMBL:AF110778 IPI:IPI00166010 IPI:IPI00410157
IPI:IPI00642900 IPI:IPI00880052 PIR:T17270 RefSeq:NP_001252541.1
RefSeq:NP_057368.3 RefSeq:NP_996882.1 UniGene:Hs.460923
UniGene:Hs.731691 PDB:4GMJ PDB:4GML PDBsum:4GMJ PDBsum:4GML
ProteinModelPortal:A5YKK6 DIP:DIP-44954N IntAct:A5YKK6
MINT:MINT-2835018 STRING:A5YKK6 PhosphoSite:A5YKK6 PaxDb:A5YKK6
PeptideAtlas:A5YKK6 PRIDE:A5YKK6 Ensembl:ENST00000317147
Ensembl:ENST00000441024 Ensembl:ENST00000567188
Ensembl:ENST00000569240 GeneID:23019 KEGG:hsa:23019 UCSC:uc002enu.4
UCSC:uc002env.3 UCSC:uc002enx.3 CTD:23019 GeneCards:GC16M058553
H-InvDB:HIX0013093 HGNC:HGNC:7877 MIM:604917 neXtProt:NX_A5YKK6
PharmGKB:PA26672 eggNOG:COG5103 HOVERGEN:HBG060834
InParanoid:A5YKK6 KO:K12604 OMA:YLKARAP OrthoDB:EOG495ZQV
PhylomeDB:A5YKK6 ChiTaRS:CNOT1 GenomeRNAi:23019 NextBio:43960
ArrayExpress:A5YKK6 Bgee:A5YKK6 Genevestigator:A5YKK6
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
Uniprot:A5YKK6
Length = 2376
Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355
>UNIPROTKB|G3V7M0 [details] [associations]
symbol:Cnot1 "RCG39079" species:10116 "Rattus norvegicus"
[GO:0005778 "peroxisomal membrane" evidence=IEA] RGD:1308009
CTD:23019 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 GeneTree:ENSGT00390000014869
EMBL:CH474006 RefSeq:NP_001128312.1 UniGene:Rn.56498 PRIDE:G3V7M0
Ensembl:ENSRNOT00000016563 GeneID:291841 KEGG:rno:291841
NextBio:633244 Uniprot:G3V7M0
Length = 2376
Score = 542 (195.9 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEANTEAIQEQITRV
Sbjct: 2248 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRV 2307
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW+HEFVHCAPEIEKLF+S
Sbjct: 2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQS 2355
>FB|FBgn0085436 [details] [associations]
symbol:Not1 "Not1" species:7227 "Drosophila melanogaster"
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] EMBL:AE013599 GO:GO:0005737
GO:GO:0007095 GO:GO:0048813 GO:GO:0007517 GO:GO:0030014
GO:GO:0000289 KO:K12604 OMA:YLKARAP InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 UniGene:Dm.4102 GeneID:5740252
KEGG:dme:Dmel_CG34407 CTD:5740252 FlyBase:FBgn0085436 ChiTaRS:NOT1
GenomeRNAi:5740252 NextBio:20891292 RefSeq:NP_001097242.1
RefSeq:NP_724798.3 STRING:A8DY81 EnsemblMetazoa:FBtr0112672
EnsemblMetazoa:FBtr0304957 UCSC:CG34407-RC PhylomeDB:A8DY81
Bgee:A8DY81 Uniprot:A8DY81
Length = 2505
Score = 538 (194.4 bits), Expect = 3.8e-50, P = 3.8e-50
Identities = 99/108 (91%), Positives = 104/108 (96%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +L+LFAEAN+EAIQEQITRV
Sbjct: 2367 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEANSEAIQEQITRV 2426
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP+YKFWDH+FVHCAPEI KLFES
Sbjct: 2427 LLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEITKLFES 2474
>ZFIN|ZDB-GENE-040915-1 [details] [associations]
symbol:cnot1 "CCR4-NOT transcription complex, subunit
1" species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] ZFIN:ZDB-GENE-040915-1
InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 EMBL:CU468035 IPI:IPI00829204
Ensembl:ENSDART00000017536 ArrayExpress:F1QAM0 Bgee:F1QAM0
Uniprot:F1QAM0
Length = 2375
Score = 533 (192.7 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 98/108 (90%), Positives = 102/108 (94%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC +LYLFAEAN EAIQEQITRV
Sbjct: 2247 MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRV 2306
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLIVNRPHPWGLLITFIELIKNP +KFW H+FVHCAPEIEKLF+S
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQS 2354
>WB|WBGene00002845 [details] [associations]
symbol:let-711 species:6239 "Caenorhabditis elegans"
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0010467 "gene
expression" evidence=IMP] [GO:0040001 "establishment of mitotic
spindle localization" evidence=IMP] [GO:0030953 "astral microtubule
organization" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0017148 "negative regulation
of translation" evidence=IMP] GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0010467
GO:GO:0002119 GO:GO:0017148 GO:GO:0018996 GO:GO:0040011
GO:GO:0000003 GO:GO:0000956 GO:GO:0030953 EMBL:FO081266
GO:GO:0040001 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054
GeneTree:ENSGT00390000014869 STRING:Q20937 PaxDb:Q20937
EnsemblMetazoa:F57B9.2 KEGG:cel:CELE_F57B9.2 UCSC:F57B9.2
CTD:175971 WormBase:F57B9.2 HOGENOM:HOG000020862 InParanoid:Q20937
OMA:HMDHEVR NextBio:890552 Uniprot:Q20937
Length = 2641
Score = 436 (158.5 bits), Expect = 2.8e-39, P = 2.8e-39
Identities = 76/108 (70%), Positives = 88/108 (81%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF N A+ LDTEGRYL N IANQLRYPN+HTHYFSC+ LYLF + + IQEQITR+
Sbjct: 2494 MDIFQNLAIQLDTEGRYLLFNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRI 2553
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
L ERL+ RPHPWGLLITFIELIKNP Y FW +EF CAPEI++LF++
Sbjct: 2554 LFERLVALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPEIQRLFQN 2601
>DICTYBASE|DDB_G0276029 [details] [associations]
symbol:DDB_G0276029 "putative CCR4-NOT complex
subunit 1" species:44689 "Dictyostelium discoideum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] dictyBase:DDB_G0276029 GO:GO:0005634
GO:GO:0005737 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0000122 GO:GO:0051726 GO:GO:0000288 GO:GO:0030015
GO:GO:0000175 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 OMA:ANIAGTR
RefSeq:XP_643319.1 ProteinModelPortal:Q75JL4
EnsemblProtists:DDB0220028 GeneID:8620365 KEGG:ddi:DDB_G0276029
InParanoid:Q75JL4 ProtClustDB:CLSZ2445457 Uniprot:Q75JL4
Length = 2526
Score = 417 (151.9 bits), Expect = 2.8e-37, P = 2.8e-37
Identities = 76/108 (70%), Positives = 90/108 (83%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
MDIF A+DLD+EGRY+F NAIANQLRYPN+HTHY SC++L+LF+E+ + I+EQITRV
Sbjct: 2404 MDIFHRLALDLDSEGRYIFFNAIANQLRYPNNHTHYLSCVILFLFSESGQDIIKEQITRV 2463
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
LLERLI N+PHPWGLLITFIELIKN Y FW H F APEI +LF+S
Sbjct: 2464 LLERLISNKPHPWGLLITFIELIKNLRYNFWSHGFTKVAPEIAQLFDS 2511
>GENEDB_PFALCIPARUM|PF11_0049 [details] [associations]
symbol:PF11_0049 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 380 (138.8 bits), Expect = 3.4e-33, P = 3.4e-33
Identities = 68/108 (62%), Positives = 84/108 (77%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
++I L D EGR+ ++IAN LRYPNSHTHYFSCLLL++F +NTE I EQIT +
Sbjct: 2949 IEIILYLTYKFDMEGRHYLFSSIANHLRYPNSHTHYFSCLLLWIFKVSNTEIINEQITGI 3008
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
L+ERLIV+RPHPWGLLITFIELI+NP++KFW FV PEIE +F+S
Sbjct: 3009 LIERLIVHRPHPWGLLITFIELIRNPIFKFWQCSFVSVVPEIENMFQS 3056
>UNIPROTKB|Q8IIW4 [details] [associations]
symbol:PF11_0049 "NOT family protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014186 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_001347725.1
ProteinModelPortal:Q8IIW4 IntAct:Q8IIW4 MINT:MINT-1629072
EnsemblProtists:PF11_0049:mRNA GeneID:810602 KEGG:pfa:PF11_0049
EuPathDB:PlasmoDB:PF3D7_1103800 HOGENOM:HOG000282195 Uniprot:Q8IIW4
Length = 3371
Score = 380 (138.8 bits), Expect = 3.4e-33, P = 3.4e-33
Identities = 68/108 (62%), Positives = 84/108 (77%)
Query: 1 MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
++I L D EGR+ ++IAN LRYPNSHTHYFSCLLL++F +NTE I EQIT +
Sbjct: 2949 IEIILYLTYKFDMEGRHYLFSSIANHLRYPNSHTHYFSCLLLWIFKVSNTEIINEQITGI 3008
Query: 61 LLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
L+ERLIV+RPHPWGLLITFIELI+NP++KFW FV PEIE +F+S
Sbjct: 3009 LIERLIVHRPHPWGLLITFIELIRNPIFKFWQCSFVSVVPEIENMFQS 3056
>POMBASE|SPAC20G8.06 [details] [associations]
symbol:not1 "CCR4-Not complex subunit Not1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IC] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
PomBase:SPAC20G8.06 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000289 GO:GO:0030015
GO:GO:0006354 eggNOG:COG5103 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 PIR:T38128
RefSeq:NP_593323.1 ProteinModelPortal:P87112 STRING:P87112
EnsemblFungi:SPAC20G8.06.1 GeneID:2542001 KEGG:spo:SPAC20G8.06
OMA:ANIAGTR OrthoDB:EOG4SFDF0 NextBio:20803082 Uniprot:P87112
Length = 2100
Score = 299 (110.3 bits), Expect = 7.8e-25, P = 7.8e-25
Identities = 58/101 (57%), Positives = 72/101 (71%)
Query: 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEA----IQEQITRVLLERLIV 67
D++ RY L AIANQLRYP+SHT+Y SC LYLF ++ I+EQ+T VLLER+I
Sbjct: 1974 DSKCRYFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNNPQELLIKEQMTTVLLERIIC 2033
Query: 68 NRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFES 108
NRPHPWGLLITF EL+KN Y FW H ++ EI +LF+S
Sbjct: 2034 NRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDS 2074
>ASPGD|ASPL0000078074 [details] [associations]
symbol:AN4965 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5103 KO:K12604 InterPro:IPR007196 InterPro:IPR024557
Pfam:PF12842 Pfam:PF04054 OrthoDB:EOG4SFDF0 OMA:VIQEQIN
RefSeq:XP_662569.1 ProteinModelPortal:Q5B3B5 STRING:Q5B3B5
EnsemblFungi:CADANIAT00005431 GeneID:2872761 KEGG:ani:AN4965.2
HOGENOM:HOG000196837 Uniprot:Q5B3B5
Length = 2317
Score = 264 (98.0 bits), Expect = 4.6e-21, P = 4.6e-21
Identities = 54/96 (56%), Positives = 68/96 (70%)
Query: 11 LDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEA----IQEQITRVLLERLI 66
L E RY L+A+ANQLRYPNSHT++FS +L LF TE I++QI RVLLERLI
Sbjct: 2222 LRPEARYYLLSAMANQLRYPNSHTYFFSFAILRLFGTDYTEQDESDIRQQIIRVLLERLI 2281
Query: 67 VNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEI 102
V+RPHPWGL+IT EL++N Y F+ F+ APE+
Sbjct: 2282 VHRPHPWGLIITLQELLQNSSYAFFHLPFIQAAPEL 2317
>CGD|CAL0001252 [details] [associations]
symbol:CDC39 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0007124 "pseudohyphal
growth" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0001252 GO:GO:0071216
GO:GO:0036180 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000168
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 RefSeq:XP_712097.1 ProteinModelPortal:Q59R01
STRING:Q59R01 GeneID:3646278 KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 247 (92.0 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 52/103 (50%), Positives = 68/103 (66%)
Query: 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAE-------ANTEAIQEQITRVLLER 64
+TE +Y +NAIANQLRYPNSHTH+F ++L+ F+ N +QE ITRVLLER
Sbjct: 1902 NTEFKYHLINAIANQLRYPNSHTHWFIGIILHFFSNNNIWNSNGNKLVVQEIITRVLLER 1961
Query: 65 LIVNRPHPWGLLITFIELIKNPVYKFWDHEFVH-CAPEIEKLF 106
I N+PHPWGL I F EL+KN Y F++ FV E++ +F
Sbjct: 1962 RISNKPHPWGLTILFTELVKNGDYGFFELPFVKDSVEEVKNIF 2004
>UNIPROTKB|Q59R01 [details] [associations]
symbol:CDC39 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Cdc39p" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
CGD:CAL0001252 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000168 KO:K12604 InterPro:IPR007196
InterPro:IPR024557 Pfam:PF12842 Pfam:PF04054 RefSeq:XP_712097.1
ProteinModelPortal:Q59R01 STRING:Q59R01 GeneID:3646278
KEGG:cal:CaO19.1084 Uniprot:Q59R01
Length = 2016
Score = 247 (92.0 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 52/103 (50%), Positives = 68/103 (66%)
Query: 12 DTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAE-------ANTEAIQEQITRVLLER 64
+TE +Y +NAIANQLRYPNSHTH+F ++L+ F+ N +QE ITRVLLER
Sbjct: 1902 NTEFKYHLINAIANQLRYPNSHTHWFIGIILHFFSNNNIWNSNGNKLVVQEIITRVLLER 1961
Query: 65 LIVNRPHPWGLLITFIELIKNPVYKFWDHEFVH-CAPEIEKLF 106
I N+PHPWGL I F EL+KN Y F++ FV E++ +F
Sbjct: 1962 RISNKPHPWGLTILFTELVKNGDYGFFELPFVKDSVEEVKNIF 2004
>SGD|S000000689 [details] [associations]
symbol:CDC39 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000749
"response to pheromone involved in conjugation with cellular
fusion" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0030015 "CCR4-NOT core
complex" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA;IPI] [GO:0007124 "pseudohyphal growth" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IGI;IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IPI]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051726
"regulation of cell cycle" evidence=IMP] SGD:S000000689
GO:GO:0005634 GO:GO:0005737 EMBL:X59720 EMBL:BK006937 GO:GO:0000122
GO:GO:0051726 GO:GO:0006368 GO:GO:0007124 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 PDB:4B8C PDBsum:4B8C eggNOG:COG5103
KO:K12604 InterPro:IPR007196 InterPro:IPR024557 Pfam:PF12842
Pfam:PF04054 GeneTree:ENSGT00390000014869 GO:GO:0000749 EMBL:X70151
PIR:S28417 RefSeq:NP_010017.2 PDB:4B89 PDB:4B8A PDB:4B8B
PDBsum:4B89 PDBsum:4B8A PDBsum:4B8B ProteinModelPortal:P25655
DIP:DIP-1202N IntAct:P25655 MINT:MINT-383459 STRING:P25655
PaxDb:P25655 PeptideAtlas:P25655 EnsemblFungi:YCR093W GeneID:850455
KEGG:sce:YCR093W HOGENOM:HOG000057131 OMA:VIQEQIN OrthoDB:EOG43XZBJ
NextBio:966081 Genevestigator:P25655 GermOnline:YCR093W
Uniprot:P25655
Length = 2108
Score = 186 (70.5 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 41/109 (37%), Positives = 62/109 (56%)
Query: 3 IFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFA--EANTEA--IQEQIT 58
+ N + E +Y + +I QLRYPN HT++FS +L+ +F E N + +QE I
Sbjct: 1968 LLFNLIQNGSIEMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIIL 2027
Query: 59 RVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFE 107
R L+R+IVN+PH WG+ + F +LI N D FV PEI+ + +
Sbjct: 2028 RNFLKRIIVNKPHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQ 2076
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.329 0.145 0.465 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 144 122 0.00091 102 3 11 22 0.42 30
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 585 (62 KB)
Total size of DFA: 137 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.97u 0.08s 13.05t Elapsed: 00:00:10
Total cpu time: 12.98u 0.08s 13.06t Elapsed: 00:00:10
Start: Thu Aug 15 11:34:50 2013 End: Thu Aug 15 11:35:00 2013