RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1281
         (144 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.021
 Identities = 25/141 (17%), Positives = 38/141 (26%), Gaps = 34/141 (24%)

Query: 1   MDIFLNFAVDLDTEG--------RYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEA 52
             I+L   V L+ E          Y       +    P     YF   + +         
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 53  IQEQITRVLL-----ERLIVNRPHPW----GLLITFIELIKNPVYKFWDHEFVHCAPEIE 103
                  V L     E+ I +    W     +L T  +L     YK   +   +      
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---YK--PYICDND----- 538

Query: 104 KLFESGWPLYAQLLIDIFKFL 124
                  P Y +L+  I  FL
Sbjct: 539 -------PKYERLVNAILDFL 552



 Score = 32.9 bits (74), Expect = 0.029
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 21/100 (21%)

Query: 3   IF-LNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRVL 61
           IF LN       E     L  +  Q+  PN  +       + L       +IQ +     
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKL----RIHSIQAE----- 233

Query: 62  LERLIVNRPHPWGLLITFIEL--IKNPVYKFWDHEF-VHC 98
           L RL+ ++P+   LL+    L  ++N   K W+  F + C
Sbjct: 234 LRRLLKSKPYENCLLV----LLNVQNA--KAWNA-FNLSC 266


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.091
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 37/151 (24%)

Query: 4   FLNF---AVDLDTEGRY-----LFLNAIANQ-LRYPNSHTHYFSCLLLYLFAEANTEAIQ 54
           FL +    V+    G++     L L    N  L   + H      L   L  E +T  ++
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-----LAAKLLQENDTTLVK 118

Query: 55  EQ-ITRVLLE-RLIVNRP---HPWGLLITFIELIKNPVY----------KFWDHEFVHCA 99
            + + +  +  R++  RP        L   +      +            +++       
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------- 171

Query: 100 PEIEKLFESGWPLYAQLLIDIFKFLAPFLPQ 130
            E+  L+++   L   L+    + L+  +  
Sbjct: 172 -ELRDLYQTYHVLVGDLIKFSAETLSELIRT 201


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.17
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 8/28 (28%)

Query: 101 EIEKLFESGWPLYAQLLIDIFKFLAPFL 128
            ++KL ++   LYA    D     AP L
Sbjct: 21  ALKKL-QASLKLYAD---DS----APAL 40


>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
           hydrolase; HET: MCO; 1.50A {Elizabethkingia
           meningoseptica} SCOP: d.157.1.1
          Length = 223

 Score = 27.5 bits (61), Expect = 1.7
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 19  FLNAIANQLRYP-----NSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPW 73
           F + I  +          +H+H      L  F +   +    ++T  +L +    R    
Sbjct: 53  FTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRAQYT 112


>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
           1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
           1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
           3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
           3kns_A 3knr_A 2bfz_A ...
          Length = 227

 Score = 26.7 bits (59), Expect = 2.5
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 5/59 (8%)

Query: 19  FLNAIANQLRYP-----NSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHP 72
            +  +  + +        +H H      +    E   +A    +T  L ++     P  
Sbjct: 67  LIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLG 125


>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
           TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
           d.66.1.4 PDB: 1h3e_A*
          Length = 432

 Score = 25.8 bits (57), Expect = 6.2
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)

Query: 47  EANTEAIQEQITRVL---LERLIVNRPHPWGLLITFIELIK 84
             N +    Q  ++L        +     W   +TF E+++
Sbjct: 102 RENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVR 142


>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
           binding domain, signaling protein; 1.20A {Mus musculus}
           PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
           3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
          Length = 120

 Score = 24.9 bits (55), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 88  YKFW--DHEFVHCAPEIEKLFESGW 110
           YK+   DHE V  A +++ +FE  +
Sbjct: 87  YKYNPPDHEVVAMARKLQDVFEMRF 111


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,232,552
Number of extensions: 122885
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 23
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)