RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1281
         (144 letters)



>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52
          recombinase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 29.6 bits (66), Expect = 0.088
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 39 CLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIE 81
          C     +     +AIQ+ + + L    I +R    G  + +IE
Sbjct: 1  CFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIE 43


>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella
          dysenteriae, toxin I [TaxId: 622]}
          Length = 289

 Score = 24.9 bits (54), Expect = 4.1
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 7  FAVDLDTEGRY-LFLNAIANQLRYPNSHTHYFSCLLL 42
          F +D  T   Y   LN I + +  P          LL
Sbjct: 3  FTLDFSTAKTYVDSLNVIRSAIGTPLQTISSGGTSLL 39


>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 24.7 bits (53), Expect = 4.6
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 1   MDIFLNFAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCLLLYLFAEANTEAIQEQITRV 60
               L F VDL      L ++    + +   S     + ++  L  +   E  ++ +   
Sbjct: 145 HHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEY 204

Query: 61  LLERLIVNRPHPW-GLLITFIELIKNPVYKFWD 92
           + +       + +    +  I  IK+  +  WD
Sbjct: 205 MKKEYPEMTEYVFSEEELAEINRIKDTKFGTWD 237


>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain
           {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 24.5 bits (51), Expect = 5.5
 Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 31  NSHTHYFSCLLLYLFAEANTEAIQEQITRVL-LERLIVNRPHPWGLLITFIELIKNPVYK 89
             H H  +           +  + E I R    + L+ +         T    I N +  
Sbjct: 4   EPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQH 63

Query: 90  FWDHEFVHCAPE 101
              H  V  A  
Sbjct: 64  VRTHVDVSDATL 75


>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
           dehydrogenase {Escherichia coli [TaxId: 562]}
          Length = 146

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 5/55 (9%), Positives = 13/55 (23%)

Query: 59  RVLLERLIVNRPHPWGLLITFIELIKNPVYKFWDHEFVHCAPEIEKLFESGWPLY 113
            VL++R++  R       + F           +           +        + 
Sbjct: 15  SVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDII 69


>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium
          acetobutylicum [TaxId: 1488]}
          Length = 310

 Score = 24.4 bits (51), Expect = 7.4
 Identities = 9/68 (13%), Positives = 17/68 (25%)

Query: 31 NSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKF 90
          + H H      L +  +          T     + +              +LIKN   + 
Sbjct: 5  DLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRV 64

Query: 91 WDHEFVHC 98
               +H 
Sbjct: 65 ALFATLHK 72


>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable
           catalytic domain {Thermotoga maritima [TaxId: 2336]}
          Length = 281

 Score = 24.2 bits (51), Expect = 7.7
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 31  NSHTHYFSCLLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVYKF 90
           N+HTH    LL  +  + + E          +E  +  +   +G ++  +E+ ++ +  F
Sbjct: 4   NTHTHAPMTLLRGVAEDLSFEEWLFSKVLP-IEDRLTEKMAYYGTILAQMEMARHGIAGF 62

Query: 91  WDHEFVHCAPEIEKLFESGWPLYA 114
            D  + H     + + + G     
Sbjct: 63  VDM-YFHEEWIAKAVRDFGMRALL 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 556,174
Number of extensions: 25381
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 19
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.1 bits)