BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12810
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 6/143 (4%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G+ V V++R DR+GGLL YGIP KL K VV+RRVKLLA G+ + N VG+D + EL
Sbjct: 145 GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPEL 204
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGN-----ENVSPISAK 253
+ A+L+ TG RD+ PG L I A+ +L + K +G+ EN S ++A
Sbjct: 205 RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGS-LNAA 263
Query: 254 DKNVIVIGGGDTGCDCIATSLRQ 276
K+V+V+GGGDT DC+ T++RQ
Sbjct: 264 GKHVVVLGGGDTAMDCVRTAIRQ 286
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 113
G+ V V++R DR+GGLL YGIP KL K VV+RRVKLLA G+ + N VG+D +
Sbjct: 145 GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDAS 200
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 142 VTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYE 200
V ++E+ GL+++G+ P K V+ + ++ F N+ VG+D+ +EL +
Sbjct: 34 VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQD 93
Query: 201 EFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
+ A++L GA + L IPG +L G++ A +F+ W N ++P + D VI +
Sbjct: 94 AYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV-GWYNGLPENRELAPDLSCDTAVI-L 151
Query: 261 GGGDTGCD 268
G G+ D
Sbjct: 152 GQGNVALD 159
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 130 CPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 189
C + + +T+FE+ + VGGL IP +L +VV ++L+ G++ I
Sbjct: 202 CASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVK----IIC 257
Query: 190 GKDIAAKELY------EEFDALLLCTGATWPR--DLPIPGRQLSGIYFAMSFLESWQKKQ 241
GK ++ E+ E + A + G P+ D+ Q G Y + FL K
Sbjct: 258 GKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSS 317
Query: 242 MGNENV--SPISAKDKNVIVIGGGDTGCDCIATSLR 275
SP+ + VIV+G GDT DC ++LR
Sbjct: 318 KAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR 353
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 40 CRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEG 99
C +F A L Y +T+FE+ + VGGL IP +L +VV ++L+ G
Sbjct: 202 CASFLARLGYS---------DITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 252
Query: 100 IE 101
++
Sbjct: 253 VK 254
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 130 CPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 189
C + + +T+FE+ + VGGL IP +L +VV ++L+ G++ I
Sbjct: 202 CASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVK----IIC 257
Query: 190 GKDIAAKELY------EEFDALLLCTGATWPR--DLPIPGRQLSGIYFAMSFLESWQKKQ 241
GK ++ E+ E + A + G P+ D+ Q G Y + FL K
Sbjct: 258 GKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSS 317
Query: 242 MGNENV--SPISAKDKNVIVIGGGDTGCDCIATSLR 275
SP+ + VIV+G GDT DC ++LR
Sbjct: 318 KAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR 353
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 40 CRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEG 99
C +F A L Y +T+FE+ + VGGL IP +L +VV ++L+ G
Sbjct: 202 CASFLARLGYS---------DITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 252
Query: 100 IE 101
++
Sbjct: 253 VK 254
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 153 GLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGA 211
GL++ G+ P K + ++ K F N+ VG+ + EL E +DA++ GA
Sbjct: 47 GLVRSGVAPDQPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGA 106
Query: 212 TWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
R L IPG L G A+ F+ W E VSP +VIG G+ D
Sbjct: 107 QSDRMLNIPGEDLPGSIAAVDFV-GWYNAHPHFEQVSP-DLSGARAVVIGNGNVALDV 162
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 153 GLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGA 211
GL++ G+ P K + ++ K F N+ VG+ + EL E +DA++ GA
Sbjct: 47 GLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGA 106
Query: 212 TWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
R L IPG L G A+ F+ W E VSP +VIG G+ D
Sbjct: 107 QSDRMLNIPGEDLPGSIAAVDFV-GWYNAHPHFEQVSP-DLSGARAVVIGNGNVALDV 162
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
++ +E E +D L++ GA P +L IPG+ L IY W K + + V P
Sbjct: 95 VSGEERVENYDKLIISPGAV-PFELDIPGKDLDNIYLMRG--RQWAIK-LKQKTVDP--- 147
Query: 253 KDKNVIVIGGGDTGCDC 269
+ NV+VIG G G +
Sbjct: 148 EVNNVVVIGSGYIGIEA 164
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 139 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
GH VT+F+ + +GG IP + E ++ +++ G+ K N V D
Sbjct: 396 GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD---- 451
Query: 197 ELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKN 256
+ FD +L +G PR PI G + +S+L+ + K +P+ K
Sbjct: 452 -QLQAFDETILASGIV-PRTPPIDGIDHPKV---LSYLDVLRDK-------APVGNK--- 496
Query: 257 VIVIGGGDTGCD 268
V +IG G G D
Sbjct: 497 VAIIGCGGIGFD 508
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 158 GIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK--ELYEEF---------DALL 206
G P E++ R + G E T D+++K +L+ EF DA++
Sbjct: 76 GFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAII 135
Query: 207 LCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGN---ENVSPISAKDKNVIVIGGG 263
L TGA+ R + +PG + WQK + PI ++K + VIGGG
Sbjct: 136 LATGASAKR-MHLPGEETY-----------WQKGISACAVCDGAVPIF-RNKPLAVIGGG 182
Query: 264 DTGCD 268
D+ C+
Sbjct: 183 DSACE 187
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 158 GIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK--ELYEEF---------DALL 206
G P E++ R + G E T D+++K +L+ EF DA++
Sbjct: 64 GFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAII 123
Query: 207 LCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGN---ENVSPISAKDKNVIVIGGG 263
L TGA+ R + +PG + WQK + PI ++K + VIGGG
Sbjct: 124 LATGASAKR-MHLPGEETY-----------WQKGISACAVCDGAVPIF-RNKPLAVIGGG 170
Query: 264 DTGCD 268
D+ C+
Sbjct: 171 DSACE 175
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 35/149 (23%)
Query: 142 VTVFERNDRVGGLLQYGIPTMKLSKEV----------------------VQRRVKLLAAE 179
VT +E ND + L GI + L KE+ VQ R ++ +
Sbjct: 28 VTAYEMNDNIS-FLSXGI-ALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQVTNVD 85
Query: 180 GIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQK 239
E KT I V I +E E +D L++ TG+ P PIPG S +Y ++ ++
Sbjct: 86 P-ETKT-IKVKDLITNEEKTEAYDKLIMTTGSK-PTVPPIPGIDSSRVYLCKNYNDA--- 139
Query: 240 KQMGNENVSPISAKDKNVIVIGGGDTGCD 268
K++ E + K K + +IG G G +
Sbjct: 140 KKLFEE-----APKAKTITIIGSGYIGAE 163
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 78 IPTMKLSKEVVQRRVK-----LLAAEGIEFKTNINVG--KDIAAKVT--NHTPQSDNQTK 128
P +++ + RV + + +E K IN G + I AK +H P S
Sbjct: 388 FPDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKAKYYHLDHEPFS----- 442
Query: 129 HCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188
VN+ +S + R+ +Y +L E+ ++ A E +FKT+++
Sbjct: 443 ----YAVNVQNNSASDKHATVRIFLAPKYD----ELGNEIKADELRRTAIELDKFKTDLH 494
Query: 189 VGKDIAAKELYEE---------FDALLLCTGAT----------WPRDLPIPGRQLSGI-Y 228
GK+ + + F+ LL G WP L +P ++G+ Y
Sbjct: 495 PGKNTVVRHSLDSSVTLSHQPTFEDLLHGVGLNEHKSEYCSCGWPSHLLVPKGNVAGMEY 554
Query: 229 FAMSFLESWQKKQM-GNENVSPISA 252
L W K ++ G+E+V+ + A
Sbjct: 555 HLFVMLTDWDKDKVDGSESVACVDA 579
>pdb|1DY2|A Chain A, Murine Collagen Alpha1(Xv), Endostatin Domain
Length = 180
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 156 QYGIPTMKLSKEVVQRRV-KLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWP 214
++G+P + L +V+ + + +G +F T+I + FD + T +WP
Sbjct: 62 RFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPI----------YSFDGRDVMTDPSWP 111
Query: 215 RDLPIPGRQLSGIYFAMSFLESWQKKQMGNEN-VSPIS 251
+ + G G+ + E+W+ M SP+S
Sbjct: 112 QKVVWHGSNPHGVRLVDKYCEAWRTTDMAVTGFASPLS 149
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 201 EFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
E+ L+ TG PR L G L+G++ + + K+ + ++ + A KN +VI
Sbjct: 107 EYGKLIWATGGD-PRRLSCVGADLAGVH-------AVRTKEDADRLMAELDAGAKNAVVI 158
Query: 261 GGGDTGCDCIA 271
GGG G + A
Sbjct: 159 GGGYIGLEAAA 169
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 172 RVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPG-RQLSG--IY 228
R + L EG FK + G AK + + GA PR + PG R+ G +Y
Sbjct: 87 RAETLEREGDLFKVTTSQGNAYTAKAVI-----IAAGVGAFEPRRIGAPGEREFEGRGVY 141
Query: 229 FAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCD 268
+A+ +Q K+ V+++GGGD+ D
Sbjct: 142 YAVKSKAEFQGKR---------------VLIVGGGDSAVD 166
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 43/205 (20%)
Query: 78 IPTMKLSKEVVQRRVK-----LLAAEGIEFKTNINVG--KDIAAKVT--NHTPQSDNQTK 128
P +++ + RV + + +E K IN G + I A+ +H P S
Sbjct: 388 FPDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFS----- 442
Query: 129 HCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188
VN+ +S + R+ +Y +L E+ ++ A E +FKT+++
Sbjct: 443 ----YAVNVQNNSASDKHATVRIFLAPKYD----ELGNEIKADELRRTAIELDKFKTDLH 494
Query: 189 VGKDIAAKELYEE---------FDALLLCTGAT----------WPRDLPIPGRQLSGI-Y 228
GK+ + + F+ LL G WP L +P + G+ Y
Sbjct: 495 PGKNTVVRHSLDSSVTLSHQPTFEDLLHGVGLNEHKSEYCSCGWPSHLLVPKGNIKGMEY 554
Query: 229 FAMSFLESWQKKQM-GNENVSPISA 252
L W K ++ G+E+V+ + A
Sbjct: 555 HLFVMLTDWDKDKVDGSESVACVDA 579
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 43/205 (20%)
Query: 78 IPTMKLSKEVVQRRVK-----LLAAEGIEFKTNINVG--KDIAAKVT--NHTPQSDNQTK 128
P +++ + RV + + +E K IN G + I A+ +H P S
Sbjct: 388 FPDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFS----- 442
Query: 129 HCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188
VN+ +S + R+ +Y +L E+ ++ A E +FKT+++
Sbjct: 443 ----YAVNVQNNSASDKHATVRIFLAPKYD----ELGNEIKADELRRTAIELDKFKTDLH 494
Query: 189 VGKDIAAKELYEE---------FDALLLCTGAT----------WPRDLPIPGRQLSGI-Y 228
GK+ + + F+ LL G WP L +P + G+ Y
Sbjct: 495 PGKNTVVRHSLDSSVTLSHQPTFEDLLHGVGLNEHKSEYCSCGWPSHLLVPKGNIKGMEY 554
Query: 229 FAMSFLESWQKKQM-GNENVSPISA 252
L W K ++ G+E+V+ + A
Sbjct: 555 HLFVMLTDWDKDKVDGSESVACVDA 579
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 204 ALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGG 263
A++L TGA PR L IPG W K K K V+VIGGG
Sbjct: 114 AVILATGAD-PRKLGIPGED-----------NFWGKGVSTCATCDGFFYKGKKVVVIGGG 161
Query: 264 DTGCD 268
D +
Sbjct: 162 DAAVE 166
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 183 FKTNINVGKDIAAKELYEEFDALLLC-TGATWPRDLPIPGR--QLSG--IYFAMSFLESW 237
F+T N G +Y L+ GA PR LP G L+G +Y+A+ +E +
Sbjct: 108 FETRTNTGN------VYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDF 161
Query: 238 QKKQMGNENVSPISAKDKNVIVIGGGDTGCD 268
K K V+++GGGD+ D
Sbjct: 162 ---------------KGKRVVIVGGGDSALD 177
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 47/135 (34%)
Query: 141 SVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG-KDIAAKELY 199
S FE + G + QYG +K + +G E+K IN G K++ AK
Sbjct: 65 STKXFEHAKKFGAVYQYG-------------DIKSVEDKG-EYKV-INFGNKELTAK--- 106
Query: 200 EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA------K 253
A+++ TGA + + + +PG Q ++G VS + K
Sbjct: 107 ----AVIIATGAEYKK-IGVPGEQ-----------------ELGGRGVSYCAVCDGAFFK 144
Query: 254 DKNVIVIGGGDTGCD 268
+K + VIGGGD+ +
Sbjct: 145 NKRLFVIGGGDSAVE 159
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 41 KRCAPLMLRLAAHSAGTFDKGTKTGG 66
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 203 DALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGG 262
DA+++ TG+ R + +PG QL G+ L ++ Q+ ++ + + ++++GG
Sbjct: 101 DAIVIATGSR-ARTMALPGSQLPGVVT----LRTYGDVQVLRDSWTSAT----RLLIVGG 151
Query: 263 GDTGCDCIATSLRQ 276
G GC+ +AT+ R+
Sbjct: 152 GLIGCE-VATTARK 164
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 201 EFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
++D L+L TG PR LP+ + G +L + + + + D ++VI
Sbjct: 101 DYDRLVLATGGR-PRPLPVASGAV-GKANNFRYLRTLEDAECIRRQL----IADNRLVVI 154
Query: 261 GGGDTGCDCIATSLR 275
GGG G + AT+++
Sbjct: 155 GGGYIGLEVAATAIK 169
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 201 EFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
++D L+L TG PR LP+ + G +L + + + + D ++VI
Sbjct: 102 DYDRLVLATGGR-PRPLPVASGAV-GKANNFRYLRTLEDAECIRRQL----IADNRLVVI 155
Query: 261 GGGDTGCDCIATSLR 275
GGG G + AT+++
Sbjct: 156 GGGYIGLEVAATAIK 170
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 29 KRCAPLMLKLAWHSAGTFDKGTKTGG 54
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 41 KRCAPLMLRLAWHSAGTFDKGTKTGG 66
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 41 KRCAPLMLRLAWHSAGTFDKGTKTGG 66
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 29 KRCAPLMLRLAWHSAGTFDKGTKTGG 54
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K C PL++ + HS F++ + GG
Sbjct: 41 KRCAPLMLRLAWHSAGTFDKGTKTGG 66
>pdb|2YYB|A Chain A, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
pdb|2YYB|B Chain B, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
Length = 242
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 187 INVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQ 223
++ G+ I K L EE D L++ G W + PI G
Sbjct: 43 VDAGEAIFRKALEEEVDFLIVHHGLFWGKPFPIVGHH 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,942,449
Number of Sequences: 62578
Number of extensions: 309595
Number of successful extensions: 933
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 46
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)