Query psy12810
Match_columns 276
No_of_seqs 385 out of 2618
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:21:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12779 putative bifunctional 100.0 5.7E-30 1.2E-34 250.2 15.8 191 1-276 251-469 (944)
2 PRK12831 putative oxidoreducta 100.0 1.8E-29 3.8E-34 231.7 12.9 208 1-276 91-303 (464)
3 PRK12810 gltD glutamate syntha 100.0 8.8E-29 1.9E-33 227.9 13.9 208 1-275 95-302 (471)
4 PRK12775 putative trifunctiona 100.0 1.8E-28 3.8E-33 241.6 13.5 207 1-276 382-593 (1006)
5 PRK09853 putative selenate red 100.0 3.6E-28 7.8E-33 235.1 13.3 201 1-276 490-690 (1019)
6 TIGR01317 GOGAT_sm_gam glutama 99.9 1.2E-27 2.6E-32 220.7 13.9 209 1-276 95-305 (485)
7 TIGR01316 gltA glutamate synth 99.9 1.5E-27 3.3E-32 218.4 13.5 209 1-276 79-294 (449)
8 PRK12814 putative NADPH-depend 99.9 4.1E-27 8.8E-32 224.0 12.9 201 1-276 145-345 (652)
9 PRK12778 putative bifunctional 99.9 1.2E-26 2.7E-31 224.5 14.1 210 1-276 380-592 (752)
10 TIGR03315 Se_ygfK putative sel 99.9 1.2E-26 2.6E-31 225.5 12.2 200 1-275 488-687 (1012)
11 PRK13984 putative oxidoreducta 99.9 7.4E-26 1.6E-30 214.6 15.8 207 1-276 234-440 (604)
12 PRK12769 putative oxidoreducta 99.9 5E-26 1.1E-30 217.2 14.4 209 1-276 277-490 (654)
13 TIGR01318 gltD_gamma_fam gluta 99.9 5.1E-26 1.1E-30 209.1 13.6 208 1-275 91-303 (467)
14 COG0493 GltD NADPH-dependent g 99.9 1.7E-25 3.6E-30 202.6 13.5 209 1-276 73-284 (457)
15 PRK06567 putative bifunctional 99.9 1E-25 2.2E-30 215.7 11.8 220 1-275 322-571 (1028)
16 PRK12809 putative oxidoreducta 99.9 1.8E-25 4E-30 212.6 13.5 209 1-276 260-473 (639)
17 PRK11749 dihydropyrimidine deh 99.9 2.3E-25 5E-30 204.7 13.5 202 1-275 91-294 (457)
18 KOG0399|consensus 99.9 2E-25 4.3E-30 210.2 10.1 208 2-276 1738-1946(2142)
19 PRK12771 putative glutamate sy 99.9 1.7E-23 3.6E-28 196.9 13.0 200 1-276 90-289 (564)
20 PLN02852 ferredoxin-NADP+ redu 99.8 8.9E-21 1.9E-25 173.5 12.7 156 114-275 29-187 (491)
21 PLN02172 flavin-containing mon 99.7 1.3E-17 2.7E-22 152.9 8.8 146 110-275 11-225 (461)
22 PF00743 FMO-like: Flavin-bind 99.7 4.7E-18 1E-22 157.7 6.0 145 111-275 3-204 (531)
23 PRK12770 putative glutamate sy 99.7 9.1E-17 2E-21 143.1 13.4 159 109-274 18-192 (352)
24 COG1249 Lpd Pyruvate/2-oxoglut 99.7 1.2E-16 2.6E-21 145.0 11.0 174 43-229 13-286 (454)
25 KOG1800|consensus 99.7 1.6E-16 3.6E-21 136.5 10.6 152 116-274 25-179 (468)
26 PF13738 Pyr_redox_3: Pyridine 99.7 2.6E-17 5.7E-22 135.1 4.0 142 116-275 2-188 (203)
27 PRK07251 pyridine nucleotide-d 99.7 3E-16 6.4E-21 143.7 10.2 144 112-275 4-178 (438)
28 PTZ00188 adrenodoxin reductase 99.7 3.7E-16 8.1E-21 141.5 10.0 155 114-274 42-217 (506)
29 KOG1335|consensus 99.6 1.1E-15 2.4E-20 131.6 10.7 91 125-226 220-325 (506)
30 PRK06467 dihydrolipoamide dehy 99.6 9.9E-16 2.1E-20 141.4 10.6 171 43-275 13-195 (471)
31 KOG1399|consensus 99.6 8.5E-16 1.8E-20 138.9 8.2 146 110-275 7-207 (448)
32 PRK06370 mercuric reductase; V 99.6 2.1E-15 4.6E-20 139.1 10.6 144 112-275 6-192 (463)
33 COG2072 TrkA Predicted flavopr 99.6 9.9E-16 2.1E-20 139.8 8.0 145 113-275 10-196 (443)
34 TIGR01292 TRX_reduct thioredox 99.6 2.1E-15 4.6E-20 130.9 9.7 139 115-275 4-162 (300)
35 PLN02546 glutathione reductase 99.6 1.9E-15 4.2E-20 141.3 9.4 90 169-275 181-273 (558)
36 PRK05249 soluble pyridine nucl 99.6 4.1E-15 8.9E-20 137.1 10.7 144 112-275 6-196 (461)
37 PRK12831 putative oxidoreducta 99.6 4.2E-15 9.2E-20 136.7 10.6 66 43-109 149-215 (464)
38 PRK07251 pyridine nucleotide-d 99.6 5.3E-15 1.2E-19 135.5 11.1 165 43-218 12-257 (438)
39 TIGR01316 gltA glutamate synth 99.6 6E-15 1.3E-19 135.3 11.2 161 43-218 142-391 (449)
40 TIGR01424 gluta_reduc_2 glutat 99.6 6.1E-15 1.3E-19 135.3 10.8 164 43-218 11-267 (446)
41 PRK09564 coenzyme A disulfide 99.6 3.4E-15 7.4E-20 137.0 8.9 149 114-275 3-170 (444)
42 TIGR02374 nitri_red_nirB nitri 99.6 1.9E-15 4.1E-20 147.0 7.1 146 115-275 2-161 (785)
43 TIGR01421 gluta_reduc_1 glutat 99.6 9.4E-15 2E-19 134.1 11.1 164 43-218 11-269 (450)
44 PRK06115 dihydrolipoamide dehy 99.6 1.2E-14 2.6E-19 134.0 11.3 169 43-275 12-195 (466)
45 PRK05976 dihydrolipoamide dehy 99.6 6E-15 1.3E-19 136.4 8.6 85 125-219 189-286 (472)
46 TIGR01424 gluta_reduc_2 glutat 99.6 9.6E-15 2.1E-19 134.0 9.4 140 113-275 4-187 (446)
47 TIGR01421 gluta_reduc_1 glutat 99.6 8.5E-15 1.8E-19 134.4 9.0 141 112-275 3-187 (450)
48 PRK10262 thioredoxin reductase 99.6 1E-14 2.2E-19 128.3 8.9 144 109-275 6-167 (321)
49 PRK12778 putative bifunctional 99.6 1.4E-14 3.1E-19 140.8 10.6 68 43-111 440-507 (752)
50 PRK06416 dihydrolipoamide dehy 99.6 2.1E-14 4.6E-19 132.4 11.1 165 43-219 13-277 (462)
51 PRK07845 flavoprotein disulfid 99.6 2.3E-14 5E-19 132.2 11.3 174 43-275 10-198 (466)
52 PRK08010 pyridine nucleotide-d 99.6 1.5E-14 3.3E-19 132.6 9.8 143 113-275 5-179 (441)
53 PRK12769 putative oxidoreducta 99.6 1.2E-14 2.7E-19 139.1 9.7 68 43-111 336-403 (654)
54 PRK06370 mercuric reductase; V 99.6 2.9E-14 6.2E-19 131.6 11.4 164 43-218 14-275 (463)
55 TIGR03315 Se_ygfK putative sel 99.5 1.6E-14 3.5E-19 141.4 10.1 63 43-106 546-608 (1012)
56 COG1249 Lpd Pyruvate/2-oxoglut 99.5 1.8E-14 4E-19 130.8 9.6 146 111-276 4-195 (454)
57 PRK05249 soluble pyridine nucl 99.5 2.4E-14 5.3E-19 132.0 10.6 165 43-218 14-276 (461)
58 PRK06416 dihydrolipoamide dehy 99.5 2.3E-14 5E-19 132.2 9.9 141 112-275 5-193 (462)
59 TIGR02053 MerA mercuric reduct 99.5 1.6E-14 3.4E-19 133.3 8.7 140 115-275 4-187 (463)
60 PRK05976 dihydrolipoamide dehy 99.5 2.5E-14 5.3E-19 132.3 9.9 143 112-275 5-201 (472)
61 PRK09754 phenylpropionate diox 99.5 1.9E-14 4.2E-19 130.1 8.7 141 115-275 7-165 (396)
62 TIGR01423 trypano_reduc trypan 99.5 3.6E-14 7.7E-19 131.2 10.2 86 172-274 109-207 (486)
63 PRK06116 glutathione reductase 99.5 2.9E-14 6.4E-19 131.0 9.6 164 43-218 13-269 (450)
64 PRK14989 nitrite reductase sub 99.5 1.5E-14 3.2E-19 141.1 7.7 147 114-275 6-166 (847)
65 PTZ00153 lipoamide dehydrogena 99.5 1.5E-13 3.2E-18 130.5 13.6 81 180-275 248-333 (659)
66 PRK13748 putative mercuric red 99.5 5.9E-14 1.3E-18 132.5 10.9 143 112-275 99-291 (561)
67 TIGR01318 gltD_gamma_fam gluta 99.5 5.4E-14 1.2E-18 129.6 10.2 67 43-110 150-216 (467)
68 PRK12809 putative oxidoreducta 99.5 7.7E-14 1.7E-18 133.2 11.6 68 43-111 319-386 (639)
69 TIGR01372 soxA sarcosine oxida 99.5 6.5E-14 1.4E-18 139.4 11.3 148 113-275 165-338 (985)
70 TIGR01438 TGR thioredoxin and 99.5 1.4E-13 3.1E-18 127.3 12.9 88 172-275 106-201 (484)
71 PRK12814 putative NADPH-depend 99.5 7.1E-14 1.5E-18 133.6 11.0 65 43-108 202-266 (652)
72 PRK09853 putative selenate red 99.5 5.1E-14 1.1E-18 137.4 10.1 65 43-108 548-612 (1019)
73 PRK06116 glutathione reductase 99.5 3.5E-14 7.6E-19 130.5 8.5 140 113-275 6-188 (450)
74 TIGR03140 AhpF alkyl hydropero 99.5 3.4E-14 7.5E-19 132.5 8.5 142 112-275 213-373 (515)
75 PTZ00058 glutathione reductase 99.5 5.5E-14 1.2E-18 131.5 9.7 142 110-275 47-258 (561)
76 PRK11749 dihydropyrimidine deh 99.5 7E-14 1.5E-18 128.7 10.1 159 43-216 149-389 (457)
77 TIGR02053 MerA mercuric reduct 99.5 1.1E-13 2.3E-18 127.7 11.3 165 43-219 9-271 (463)
78 PRK06912 acoL dihydrolipoamide 99.5 5.4E-14 1.2E-18 129.5 9.2 85 125-219 179-273 (458)
79 PLN02507 glutathione reductase 99.5 2.3E-13 4.9E-18 126.4 12.9 87 172-275 130-224 (499)
80 TIGR03143 AhpF_homolog putativ 99.5 5E-14 1.1E-18 132.5 8.5 142 113-275 6-164 (555)
81 PRK12775 putative trifunctiona 99.5 6.7E-14 1.4E-18 138.9 9.6 68 43-111 439-506 (1006)
82 PRK14727 putative mercuric red 99.5 1.3E-13 2.9E-18 127.6 11.0 144 112-275 17-209 (479)
83 PRK15317 alkyl hydroperoxide r 99.5 7.1E-14 1.5E-18 130.5 9.1 142 112-275 212-372 (517)
84 PRK06912 acoL dihydrolipoamide 99.5 6.7E-14 1.5E-18 128.9 8.6 141 115-275 4-191 (458)
85 PTZ00058 glutathione reductase 99.5 2.4E-13 5.2E-18 127.3 11.6 85 125-219 246-341 (561)
86 PRK14694 putative mercuric red 99.5 2E-13 4.3E-18 126.1 10.7 143 112-275 7-199 (468)
87 PRK12810 gltD glutamate syntha 99.5 2.9E-13 6.2E-18 125.1 11.4 66 43-109 152-217 (471)
88 PRK04965 NADH:flavorubredoxin 99.5 1.1E-13 2.3E-18 124.5 8.0 144 115-275 6-162 (377)
89 COG0492 TrxB Thioredoxin reduc 99.5 1.6E-13 3.5E-18 118.9 8.2 141 113-275 5-164 (305)
90 PRK08010 pyridine nucleotide-d 99.5 3.1E-13 6.8E-18 123.9 10.6 164 43-217 12-257 (441)
91 TIGR01350 lipoamide_DH dihydro 99.5 2.6E-13 5.7E-18 125.1 10.1 83 126-218 180-273 (461)
92 PRK07818 dihydrolipoamide dehy 99.5 3.7E-13 7.9E-18 124.3 11.0 84 125-218 181-277 (466)
93 PRK13512 coenzyme A disulfide 99.4 2E-13 4.3E-18 125.1 8.5 146 114-275 4-169 (438)
94 TIGR01350 lipoamide_DH dihydro 99.4 3.2E-13 6.9E-18 124.6 9.4 141 114-275 4-191 (461)
95 KOG0399|consensus 99.4 1.1E-12 2.5E-17 125.3 10.7 107 43-150 1794-1935(2142)
96 TIGR03169 Nterm_to_SelD pyridi 99.4 6.7E-13 1.5E-17 118.7 8.8 147 115-274 3-165 (364)
97 PRK13748 putative mercuric red 99.4 1.5E-12 3.1E-17 123.1 11.3 83 125-218 279-369 (561)
98 TIGR03452 mycothione_red mycot 99.4 2.2E-12 4.8E-17 118.6 11.6 84 177-275 103-190 (452)
99 PRK06292 dihydrolipoamide dehy 99.4 1.7E-12 3.7E-17 119.7 10.6 140 113-275 5-190 (460)
100 PRK07846 mycothione reductase; 99.4 1E-12 2.2E-17 120.8 8.8 139 114-275 4-187 (451)
101 PRK07818 dihydrolipoamide dehy 99.4 1E-12 2.2E-17 121.3 8.9 140 113-275 6-193 (466)
102 COG0493 GltD NADPH-dependent g 99.4 4E-13 8.7E-18 122.2 5.9 71 43-114 132-202 (457)
103 PRK14727 putative mercuric red 99.4 2.7E-12 5.9E-17 118.9 11.1 83 125-218 197-287 (479)
104 PTZ00052 thioredoxin reductase 99.4 3.8E-12 8.3E-17 118.3 11.9 84 125-219 191-283 (499)
105 PTZ00052 thioredoxin reductase 99.4 3.1E-12 6.7E-17 118.9 11.0 142 113-275 7-203 (499)
106 PRK10262 thioredoxin reductase 99.4 2.1E-12 4.7E-17 113.5 9.4 161 43-217 15-251 (321)
107 PRK06327 dihydrolipoamide dehy 99.4 4.3E-12 9.4E-17 117.4 10.6 144 112-275 5-204 (475)
108 PRK14694 putative mercuric red 99.3 9.2E-12 2E-16 115.1 12.0 83 125-218 187-277 (468)
109 PRK12771 putative glutamate sy 99.3 4.1E-12 8.9E-17 119.9 9.9 65 43-108 146-210 (564)
110 TIGR03385 CoA_CoA_reduc CoA-di 99.3 5.3E-12 1.1E-16 115.4 10.2 137 131-275 2-158 (427)
111 PRK06327 dihydrolipoamide dehy 99.3 9.1E-12 2E-16 115.3 11.7 85 125-219 192-289 (475)
112 PTZ00318 NADH dehydrogenase-li 99.3 4.4E-12 9.5E-17 115.8 7.9 152 114-274 13-193 (424)
113 COG1252 Ndh NADH dehydrogenase 99.3 4.5E-12 9.8E-17 112.9 6.2 153 115-275 7-176 (405)
114 TIGR01292 TRX_reduct thioredox 99.3 2.9E-11 6.3E-16 104.9 11.0 156 43-216 9-240 (300)
115 TIGR03140 AhpF alkyl hydropero 99.3 1.9E-11 4.1E-16 114.2 10.1 157 43-218 221-454 (515)
116 KOG1336|consensus 99.3 1.3E-11 2.7E-16 109.8 8.1 141 116-274 79-233 (478)
117 KOG0405|consensus 99.3 3.3E-11 7.2E-16 103.1 10.1 172 43-227 29-299 (478)
118 PRK13984 putative oxidoreducta 99.3 2.8E-11 6E-16 115.3 10.6 67 43-110 292-358 (604)
119 PRK06292 dihydrolipoamide dehy 99.3 4.2E-11 9.1E-16 110.5 11.1 83 125-218 178-272 (460)
120 PRK07846 mycothione reductase; 99.2 3.7E-11 8E-16 110.5 10.2 84 125-219 175-267 (451)
121 COG1251 NirB NAD(P)H-nitrite r 99.2 2.6E-11 5.6E-16 112.8 8.9 147 115-276 7-167 (793)
122 PRK12770 putative glutamate sy 99.2 3.3E-11 7.2E-16 107.4 9.2 64 43-107 27-90 (352)
123 COG3634 AhpF Alkyl hydroperoxi 99.2 1.5E-11 3.4E-16 105.1 4.4 138 115-274 215-374 (520)
124 TIGR01317 GOGAT_sm_gam glutama 99.2 1.9E-10 4.2E-15 106.6 12.0 66 43-109 152-217 (485)
125 PRK15317 alkyl hydroperoxide r 99.2 1.4E-10 2.9E-15 108.6 10.5 157 43-218 220-453 (517)
126 TIGR03143 AhpF_homolog putativ 99.2 1.5E-10 3.2E-15 109.1 10.7 159 43-218 13-250 (555)
127 PRK09564 coenzyme A disulfide 99.2 9.4E-11 2E-15 107.7 9.2 165 43-217 9-249 (444)
128 PRK13512 coenzyme A disulfide 99.2 1E-10 2.3E-15 107.2 8.7 163 43-217 10-244 (438)
129 KOG0405|consensus 99.2 5.7E-11 1.2E-15 101.6 6.1 143 111-275 20-210 (478)
130 KOG0404|consensus 99.1 1.4E-10 3E-15 93.7 7.9 140 116-273 13-176 (322)
131 TIGR01372 soxA sarcosine oxida 99.1 2.5E-10 5.5E-15 114.0 10.9 63 43-106 172-237 (985)
132 KOG1335|consensus 99.1 8E-11 1.7E-15 101.9 6.2 144 111-276 39-233 (506)
133 TIGR02374 nitri_red_nirB nitri 99.1 3.4E-10 7.3E-15 110.6 8.3 164 43-217 7-241 (785)
134 PLN02172 flavin-containing mon 99.1 5.4E-10 1.2E-14 102.7 8.9 33 43-76 19-51 (461)
135 PRK09754 phenylpropionate diox 99.0 3.5E-10 7.7E-15 102.4 7.0 158 43-216 12-243 (396)
136 PRK06567 putative bifunctional 99.0 1.6E-09 3.5E-14 105.4 11.2 67 43-112 392-488 (1028)
137 KOG2495|consensus 99.0 7.9E-10 1.7E-14 97.2 6.7 149 116-275 60-239 (491)
138 PRK14989 nitrite reductase sub 99.0 1.5E-09 3.2E-14 106.4 8.5 164 43-217 12-248 (847)
139 KOG4716|consensus 99.0 4.4E-09 9.5E-14 90.0 10.1 93 125-229 207-314 (503)
140 PF13434 K_oxygenase: L-lysine 98.9 4.9E-10 1.1E-14 99.1 2.8 141 115-275 6-211 (341)
141 PRK04965 NADH:flavorubredoxin 98.9 5.4E-09 1.2E-13 94.0 9.4 164 43-216 11-241 (377)
142 PF07992 Pyr_redox_2: Pyridine 98.9 1.7E-10 3.8E-15 94.2 -1.3 125 116-261 4-159 (201)
143 COG2081 Predicted flavoprotein 98.9 1.8E-08 4E-13 88.4 11.0 135 43-212 12-166 (408)
144 PRK12779 putative bifunctional 98.9 2.1E-09 4.5E-14 106.4 4.9 75 109-190 306-380 (944)
145 COG0492 TrxB Thioredoxin reduc 98.8 3.4E-08 7.3E-13 85.8 9.1 158 43-218 12-242 (305)
146 TIGR03385 CoA_CoA_reduc CoA-di 98.7 4.4E-08 9.5E-13 89.6 8.9 84 125-217 146-236 (427)
147 COG1252 Ndh NADH dehydrogenase 98.7 3.7E-08 8.1E-13 88.0 8.0 87 112-212 156-261 (405)
148 PLN02852 ferredoxin-NADP+ redu 98.7 2.2E-08 4.8E-13 92.3 6.7 70 43-113 35-107 (491)
149 PTZ00188 adrenodoxin reductase 98.7 5.7E-08 1.2E-12 88.7 7.5 71 43-113 48-119 (506)
150 KOG4716|consensus 98.6 7.2E-08 1.6E-12 82.7 7.0 63 196-274 156-218 (503)
151 PF03486 HI0933_like: HI0933-l 98.6 4.1E-08 8.9E-13 88.8 5.9 139 43-212 9-165 (409)
152 TIGR03169 Nterm_to_SelD pyridi 98.6 1.6E-07 3.4E-12 84.1 8.9 161 43-215 8-244 (364)
153 KOG0404|consensus 98.6 3.3E-07 7.1E-12 74.4 8.3 157 43-221 17-262 (322)
154 PTZ00318 NADH dehydrogenase-li 98.5 3.6E-07 7.8E-12 83.6 8.7 85 116-215 178-281 (424)
155 COG0446 HcaD Uncharacterized N 98.4 4.5E-07 9.7E-12 82.0 6.5 143 116-275 3-157 (415)
156 PRK06115 dihydrolipoamide dehy 98.3 9E-07 2E-11 81.9 6.1 94 109-219 174-281 (466)
157 PF00070 Pyr_redox: Pyridine n 98.3 5.6E-07 1.2E-11 62.4 3.0 61 116-190 4-64 (80)
158 PRK09897 hypothetical protein; 98.2 5.1E-06 1.1E-10 77.7 9.0 33 115-152 5-39 (534)
159 PRK05329 anaerobic glycerol-3- 98.2 1.7E-05 3.7E-10 72.1 11.9 77 125-212 224-317 (422)
160 PRK12842 putative succinate de 98.2 2.7E-06 5.8E-11 80.8 6.9 33 43-76 18-50 (574)
161 PLN02507 glutathione reductase 98.2 1.7E-06 3.8E-11 80.6 5.5 84 125-218 212-304 (499)
162 PLN02546 glutathione reductase 98.2 4.6E-06 1E-10 78.6 8.3 165 43-218 88-354 (558)
163 COG3486 IucD Lysine/ornithine 98.2 1E-05 2.2E-10 71.5 9.3 140 116-274 10-207 (436)
164 PF13738 Pyr_redox_3: Pyridine 98.2 8.9E-07 1.9E-11 72.4 2.6 32 43-75 6-38 (203)
165 TIGR01438 TGR thioredoxin and 98.2 2.7E-06 5.9E-11 79.0 5.4 83 125-218 189-283 (484)
166 COG1148 HdrA Heterodisulfide r 98.2 4.7E-06 1E-10 74.9 6.6 40 109-155 124-163 (622)
167 TIGR01423 trypano_reduc trypan 98.1 2.7E-06 5.9E-11 79.0 5.2 84 125-218 196-292 (486)
168 TIGR00275 flavoprotein, HI0933 98.1 1.2E-05 2.5E-10 73.0 9.2 138 43-212 6-159 (400)
169 PF00743 FMO-like: Flavin-bind 98.1 1.7E-06 3.7E-11 81.0 3.8 33 43-76 10-42 (531)
170 PRK07845 flavoprotein disulfid 98.1 3E-06 6.5E-11 78.4 5.4 93 109-218 177-278 (466)
171 PF13450 NAD_binding_8: NAD(P) 98.1 1.8E-06 3.9E-11 57.8 2.7 32 43-75 5-36 (68)
172 PRK06467 dihydrolipoamide dehy 98.1 2.8E-06 6E-11 78.8 4.6 92 109-218 174-278 (471)
173 PTZ00153 lipoamide dehydrogena 98.1 3.7E-06 8E-11 80.5 5.1 85 125-219 321-432 (659)
174 KOG1336|consensus 98.1 1.2E-05 2.7E-10 72.2 7.7 87 125-220 222-319 (478)
175 PRK04176 ribulose-1,5-biphosph 98.0 4.7E-06 1E-10 70.9 4.3 94 114-212 28-172 (257)
176 PF14691 Fer4_20: Dihydroprymi 98.0 9.2E-07 2E-11 65.0 -0.9 35 2-39 74-110 (111)
177 COG1635 THI4 Ribulose 1,5-bisp 98.0 1.2E-05 2.6E-10 65.4 5.3 92 116-212 35-177 (262)
178 PRK00711 D-amino acid dehydrog 97.9 4.3E-05 9.4E-10 69.5 8.9 48 165-212 200-256 (416)
179 TIGR03452 mycothione_red mycot 97.9 1.3E-05 2.8E-10 73.9 5.3 83 125-218 178-269 (452)
180 TIGR02032 GG-red-SF geranylger 97.9 9.6E-06 2.1E-10 69.9 4.0 93 115-212 4-147 (295)
181 COG3634 AhpF Alkyl hydroperoxi 97.8 4.2E-05 9.1E-10 66.3 6.1 90 109-221 354-459 (520)
182 TIGR00292 thiazole biosynthesi 97.8 2E-05 4.4E-10 66.9 3.8 94 114-212 24-169 (254)
183 PRK12409 D-amino acid dehydrog 97.8 0.00014 3.1E-09 66.1 9.4 47 166-212 197-257 (410)
184 PF00890 FAD_binding_2: FAD bi 97.8 7.6E-05 1.7E-09 68.0 7.5 33 43-76 8-40 (417)
185 COG0446 HcaD Uncharacterized N 97.7 2.3E-05 4.9E-10 70.9 3.5 86 116-215 141-238 (415)
186 PF13450 NAD_binding_8: NAD(P) 97.7 5.7E-06 1.2E-10 55.4 -0.5 36 116-156 1-36 (68)
187 KOG1346|consensus 97.7 4.4E-05 9.5E-10 67.6 4.7 89 178-275 269-368 (659)
188 TIGR01377 soxA_mon sarcosine o 97.7 0.00016 3.4E-09 65.0 8.3 48 165-212 144-199 (380)
189 PRK06481 fumarate reductase fl 97.7 0.00027 5.9E-09 66.1 9.9 31 43-74 70-100 (506)
190 PF01266 DAO: FAD dependent ox 97.7 5.7E-05 1.2E-09 66.7 5.1 48 165-212 146-202 (358)
191 TIGR03364 HpnW_proposed FAD de 97.6 0.00047 1E-08 61.6 10.2 48 165-212 144-196 (365)
192 COG0644 FixC Dehydrogenases (f 97.6 6.1E-05 1.3E-09 68.3 4.5 96 112-212 4-151 (396)
193 KOG2755|consensus 97.6 0.00019 4.1E-09 60.0 6.5 132 116-275 4-155 (334)
194 KOG1800|consensus 97.6 0.00016 3.4E-09 63.5 6.3 72 43-114 29-102 (468)
195 PF01946 Thi4: Thi4 family; PD 97.6 4.1E-05 8.9E-10 62.5 2.4 94 114-212 20-164 (230)
196 COG2072 TrkA Predicted flavopr 97.6 0.00025 5.5E-09 65.2 7.6 33 43-76 17-50 (443)
197 PRK01438 murD UDP-N-acetylmura 97.5 0.00016 3.4E-09 67.3 6.0 86 110-226 17-102 (480)
198 PRK11259 solA N-methyltryptoph 97.5 0.0006 1.3E-08 61.1 9.4 48 165-212 148-203 (376)
199 PRK11728 hydroxyglutarate oxid 97.5 0.00031 6.6E-09 63.6 7.5 48 165-212 148-203 (393)
200 PRK07843 3-ketosteroid-delta-1 97.5 0.00011 2.4E-09 69.6 4.6 33 43-76 16-48 (557)
201 PRK08274 tricarballylate dehyd 97.5 0.00036 7.9E-09 64.6 7.9 31 43-74 13-45 (466)
202 PRK06847 hypothetical protein; 97.5 0.00016 3.4E-09 64.9 5.4 94 114-212 7-162 (375)
203 TIGR01813 flavo_cyto_c flavocy 97.5 0.00033 7.1E-09 64.4 7.5 32 43-75 8-40 (439)
204 PRK10157 putative oxidoreducta 97.5 0.0001 2.2E-09 67.5 4.1 35 112-151 6-40 (428)
205 PRK06134 putative FAD-binding 97.5 0.00038 8.2E-09 66.3 7.8 33 43-76 21-53 (581)
206 TIGR02485 CobZ_N-term precorri 97.5 0.0004 8.7E-09 63.7 7.6 154 43-212 5-182 (432)
207 PLN02661 Putative thiazole syn 97.4 0.00015 3.3E-09 63.9 4.1 36 113-153 94-130 (357)
208 TIGR01790 carotene-cycl lycope 97.4 0.00016 3.5E-09 65.2 4.3 92 116-212 4-140 (388)
209 PLN02529 lysine-specific histo 97.4 0.00017 3.6E-09 69.9 4.4 69 5-75 126-200 (738)
210 COG1251 NirB NAD(P)H-nitrite r 97.4 0.001 2.3E-08 63.1 9.3 166 43-217 12-246 (793)
211 KOG2495|consensus 97.4 0.00029 6.3E-09 62.7 5.2 89 112-215 219-330 (491)
212 PRK06834 hypothetical protein; 97.4 0.00025 5.5E-09 66.0 5.0 94 114-212 6-155 (488)
213 TIGR02028 ChlP geranylgeranyl 97.3 0.00097 2.1E-08 60.5 8.5 35 43-78 9-43 (398)
214 PF00070 Pyr_redox: Pyridine n 97.3 0.00062 1.4E-08 46.9 5.6 56 43-108 8-63 (80)
215 PRK10015 oxidoreductase; Provi 97.3 0.00023 4.9E-09 65.3 4.0 35 112-151 6-40 (429)
216 COG3349 Uncharacterized conser 97.3 0.00024 5.3E-09 64.8 4.1 62 43-105 9-78 (485)
217 PF01494 FAD_binding_3: FAD bi 97.3 0.00012 2.6E-09 64.6 1.9 94 114-212 4-171 (356)
218 TIGR01812 sdhA_frdA_Gneg succi 97.3 0.0024 5.2E-08 60.7 10.6 29 43-72 8-36 (566)
219 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.00019 4.2E-09 58.5 2.6 59 43-104 39-98 (262)
220 PRK07121 hypothetical protein; 97.3 0.0044 9.4E-08 57.9 12.1 32 43-75 29-60 (492)
221 PRK07804 L-aspartate oxidase; 97.3 0.0024 5.2E-08 60.3 10.4 32 43-75 25-56 (541)
222 PRK06184 hypothetical protein; 97.2 0.00029 6.3E-09 65.9 4.1 34 113-151 5-38 (502)
223 PF12831 FAD_oxidored: FAD dep 97.2 5.9E-05 1.3E-09 69.1 -0.7 91 116-211 4-148 (428)
224 PRK04176 ribulose-1,5-biphosph 97.2 0.00065 1.4E-08 57.9 5.6 31 43-74 34-64 (257)
225 PRK07364 2-octaprenyl-6-methox 97.2 0.00035 7.5E-09 63.6 3.9 33 113-150 20-52 (415)
226 PLN02463 lycopene beta cyclase 97.2 0.00077 1.7E-08 62.0 6.1 95 112-212 29-168 (447)
227 TIGR03329 Phn_aa_oxid putative 97.2 0.00096 2.1E-08 61.8 6.8 48 165-212 182-236 (460)
228 PF01593 Amino_oxidase: Flavin 97.1 0.00023 5E-09 64.2 2.4 29 45-74 2-30 (450)
229 KOG1399|consensus 97.1 0.00028 6.1E-09 64.5 2.8 34 43-77 15-48 (448)
230 PRK06452 sdhA succinate dehydr 97.1 0.0033 7.1E-08 59.8 10.0 31 43-74 14-44 (566)
231 PRK08244 hypothetical protein; 97.1 0.00036 7.8E-09 65.1 3.5 32 114-150 5-36 (493)
232 COG4529 Uncharacterized protei 97.1 0.00098 2.1E-08 60.5 5.9 39 114-157 4-45 (474)
233 TIGR00551 nadB L-aspartate oxi 97.1 0.0071 1.5E-07 56.4 11.9 31 43-75 11-41 (488)
234 PRK07573 sdhA succinate dehydr 97.1 0.004 8.7E-08 60.0 10.5 28 43-71 44-71 (640)
235 PRK06175 L-aspartate oxidase; 97.1 0.0036 7.9E-08 57.5 9.8 30 43-74 13-42 (433)
236 COG1233 Phytoene dehydrogenase 97.1 0.00039 8.5E-09 64.8 3.3 32 43-75 12-43 (487)
237 TIGR03862 flavo_PP4765 unchara 97.1 0.0056 1.2E-07 54.9 10.3 72 133-212 61-140 (376)
238 PRK05714 2-octaprenyl-3-methyl 97.1 0.0033 7.1E-08 57.1 9.0 26 43-69 11-36 (405)
239 PRK11445 putative oxidoreducta 97.0 0.00064 1.4E-08 60.6 4.1 31 114-150 4-34 (351)
240 PF01946 Thi4: Thi4 family; PD 97.0 0.00031 6.7E-09 57.4 1.7 34 43-77 26-59 (230)
241 TIGR01811 sdhA_Bsu succinate d 97.0 0.0068 1.5E-07 58.0 11.0 28 43-71 7-34 (603)
242 PRK08773 2-octaprenyl-3-methyl 97.0 0.0011 2.4E-08 59.8 5.4 31 114-149 9-39 (392)
243 PRK08958 sdhA succinate dehydr 97.0 0.0011 2.4E-08 63.2 5.4 31 43-74 16-46 (588)
244 TIGR00292 thiazole biosynthesi 97.0 0.0013 2.9E-08 55.9 5.3 30 43-73 30-59 (254)
245 PRK06069 sdhA succinate dehydr 97.0 0.0086 1.9E-07 57.1 11.2 31 43-74 14-47 (577)
246 PRK08071 L-aspartate oxidase; 97.0 0.0072 1.6E-07 56.7 10.5 31 43-75 12-42 (510)
247 PRK08255 salicylyl-CoA 5-hydro 96.9 0.001 2.2E-08 65.4 4.8 91 114-212 3-140 (765)
248 PRK08163 salicylate hydroxylas 96.9 0.0017 3.7E-08 58.7 5.9 28 43-71 13-40 (396)
249 PRK07057 sdhA succinate dehydr 96.9 0.0024 5.2E-08 61.0 7.1 31 43-74 21-51 (591)
250 PLN02697 lycopene epsilon cycl 96.9 0.0014 2.9E-08 61.6 5.2 95 112-212 109-247 (529)
251 COG3380 Predicted NAD/FAD-depe 96.9 0.0017 3.6E-08 54.8 4.9 57 43-100 10-76 (331)
252 TIGR02734 crtI_fam phytoene de 96.9 0.00069 1.5E-08 63.4 3.0 32 43-75 7-38 (502)
253 PRK05192 tRNA uridine 5-carbox 96.9 0.00095 2.1E-08 63.2 3.9 32 112-148 5-36 (618)
254 PRK11883 protoporphyrinogen ox 96.9 0.0007 1.5E-08 62.2 3.0 32 43-75 9-42 (451)
255 PTZ00139 Succinate dehydrogena 96.9 0.0019 4E-08 62.0 5.9 31 43-74 38-68 (617)
256 COG3380 Predicted NAD/FAD-depe 96.9 0.00072 1.6E-08 56.9 2.7 63 114-181 4-76 (331)
257 PLN00128 Succinate dehydrogena 96.9 0.0022 4.7E-08 61.7 6.3 31 43-74 59-89 (635)
258 TIGR01373 soxB sarcosine oxida 96.8 0.0046 9.9E-08 56.2 8.0 47 166-212 183-239 (407)
259 PRK08401 L-aspartate oxidase; 96.8 0.0027 5.8E-08 58.9 6.6 26 43-69 10-35 (466)
260 PRK06263 sdhA succinate dehydr 96.8 0.0021 4.5E-08 60.8 6.0 31 43-75 16-47 (543)
261 PTZ00306 NADH-dependent fumara 96.8 0.0028 6.2E-08 65.1 7.2 32 43-75 418-449 (1167)
262 PRK07803 sdhA succinate dehydr 96.8 0.0036 7.7E-08 60.2 7.3 29 43-72 17-45 (626)
263 PRK09078 sdhA succinate dehydr 96.8 0.0034 7.3E-08 60.1 7.0 31 43-74 21-51 (598)
264 PRK11101 glpA sn-glycerol-3-ph 96.8 0.0097 2.1E-07 56.3 9.9 48 165-212 148-210 (546)
265 PRK05945 sdhA succinate dehydr 96.8 0.0023 4.9E-08 61.0 5.7 48 165-212 134-196 (575)
266 PRK06183 mhpA 3-(3-hydroxyphen 96.7 0.0016 3.4E-08 61.5 4.3 34 112-150 11-44 (538)
267 PRK07395 L-aspartate oxidase; 96.7 0.012 2.6E-07 55.7 10.2 30 43-74 18-47 (553)
268 PRK07233 hypothetical protein; 96.7 0.001 2.2E-08 60.7 2.8 31 43-74 8-38 (434)
269 COG1233 Phytoene dehydrogenase 96.7 0.00062 1.3E-08 63.4 1.3 39 113-156 5-43 (487)
270 PRK06854 adenylylsulfate reduc 96.7 0.0052 1.1E-07 58.9 7.5 28 43-71 20-49 (608)
271 PRK07333 2-octaprenyl-6-methox 96.7 0.0018 4E-08 58.6 4.3 32 114-150 4-37 (403)
272 PRK08626 fumarate reductase fl 96.7 0.018 3.8E-07 55.8 10.9 29 43-72 14-42 (657)
273 PLN02815 L-aspartate oxidase 96.7 0.004 8.7E-08 59.4 6.5 31 43-75 38-68 (594)
274 TIGR02731 phytoene_desat phyto 96.7 0.0012 2.5E-08 61.0 2.7 31 43-74 8-38 (453)
275 PRK08132 FAD-dependent oxidore 96.7 0.0017 3.6E-08 61.5 3.8 34 113-151 25-58 (547)
276 PRK07588 hypothetical protein; 96.7 0.002 4.4E-08 58.1 4.2 32 115-151 4-35 (391)
277 COG0654 UbiH 2-polyprenyl-6-me 96.6 0.0068 1.5E-07 54.8 7.6 138 43-212 11-161 (387)
278 PF12831 FAD_oxidored: FAD dep 96.6 0.0011 2.5E-08 60.7 2.4 32 43-75 8-39 (428)
279 COG1148 HdrA Heterodisulfide r 96.6 0.002 4.3E-08 58.5 3.7 65 43-108 133-201 (622)
280 PRK08243 4-hydroxybenzoate 3-m 96.6 0.0034 7.3E-08 56.8 5.3 32 114-150 5-36 (392)
281 PRK07208 hypothetical protein; 96.6 0.0015 3.3E-08 60.7 3.0 32 43-75 13-44 (479)
282 TIGR00562 proto_IX_ox protopor 96.6 0.0015 3.3E-08 60.3 3.0 32 43-75 11-46 (462)
283 PRK06185 hypothetical protein; 96.6 0.0024 5.2E-08 58.0 4.1 32 113-149 8-39 (407)
284 KOG0029|consensus 96.6 0.0014 3E-08 61.0 2.6 31 43-74 24-54 (501)
285 TIGR02733 desat_CrtD C-3',4' d 96.6 0.0015 3.3E-08 61.0 2.8 31 43-74 10-40 (492)
286 PLN02487 zeta-carotene desatur 96.6 0.0015 3.2E-08 61.8 2.7 32 43-75 84-115 (569)
287 PRK07190 hypothetical protein; 96.5 0.002 4.3E-08 60.1 3.3 33 113-150 7-39 (487)
288 TIGR02023 BchP-ChlP geranylger 96.5 0.0036 7.9E-08 56.5 4.9 30 114-148 3-32 (388)
289 PRK07512 L-aspartate oxidase; 96.5 0.02 4.3E-07 53.9 9.8 48 165-212 135-196 (513)
290 PRK09231 fumarate reductase fl 96.5 0.027 5.9E-07 53.8 10.7 32 43-75 13-46 (582)
291 PLN02576 protoporphyrinogen ox 96.5 0.002 4.3E-08 60.1 2.9 32 43-75 21-53 (496)
292 KOG0029|consensus 96.5 0.00086 1.9E-08 62.4 0.4 39 113-156 17-55 (501)
293 PRK08641 sdhA succinate dehydr 96.4 0.0088 1.9E-07 57.1 7.2 31 43-74 12-42 (589)
294 PRK06126 hypothetical protein; 96.4 0.011 2.4E-07 55.9 7.7 26 43-69 16-41 (545)
295 TIGR02734 crtI_fam phytoene de 96.4 0.00094 2E-08 62.5 0.3 37 115-156 2-38 (502)
296 PLN00093 geranylgeranyl diphos 96.4 0.015 3.2E-07 53.7 8.1 26 43-69 48-73 (450)
297 PF01134 GIDA: Glucose inhibit 96.4 0.0016 3.6E-08 58.3 1.6 31 116-151 4-35 (392)
298 TIGR02730 carot_isom carotene 96.4 0.0025 5.5E-08 59.5 3.0 33 43-76 9-41 (493)
299 PRK01747 mnmC bifunctional tRN 96.3 0.0053 1.2E-07 59.5 5.1 48 164-212 406-462 (662)
300 PLN02576 protoporphyrinogen ox 96.3 0.0011 2.5E-08 61.8 0.3 42 110-156 11-53 (496)
301 PLN02268 probable polyamine ox 96.3 0.003 6.6E-08 57.9 3.0 32 43-75 9-40 (435)
302 PRK11883 protoporphyrinogen ox 96.2 0.0013 2.7E-08 60.5 0.3 37 115-156 4-42 (451)
303 PRK08275 putative oxidoreducta 96.2 0.016 3.4E-07 55.0 7.4 27 43-70 18-46 (554)
304 TIGR00031 UDP-GALP_mutase UDP- 96.2 0.0038 8.1E-08 56.1 2.9 33 43-76 10-42 (377)
305 COG1232 HemY Protoporphyrinoge 96.2 0.0038 8.2E-08 57.1 2.9 32 43-75 9-42 (444)
306 PRK07208 hypothetical protein; 96.1 0.0015 3.3E-08 60.6 0.3 38 114-156 7-44 (479)
307 TIGR01176 fum_red_Fp fumarate 96.1 0.015 3.2E-07 55.5 7.0 31 43-74 12-44 (580)
308 TIGR01789 lycopene_cycl lycope 96.1 0.0056 1.2E-07 55.0 3.8 33 116-153 4-38 (370)
309 PRK08205 sdhA succinate dehydr 96.1 0.012 2.7E-07 56.1 6.2 28 43-72 14-41 (583)
310 COG3349 Uncharacterized conser 96.1 0.0033 7.2E-08 57.6 2.1 37 115-156 4-40 (485)
311 TIGR02732 zeta_caro_desat caro 96.1 0.0045 9.7E-08 57.6 2.9 33 43-76 8-40 (474)
312 PRK09077 L-aspartate oxidase; 96.0 0.076 1.6E-06 50.2 11.1 30 43-74 17-46 (536)
313 PRK07233 hypothetical protein; 96.0 0.0018 4E-08 59.0 0.2 37 115-156 3-39 (434)
314 PF13454 NAD_binding_9: FAD-NA 96.0 0.0049 1.1E-07 48.3 2.6 30 116-150 2-36 (156)
315 TIGR00136 gidA glucose-inhibit 96.0 0.032 7E-07 53.0 8.2 31 43-74 9-39 (617)
316 COG1232 HemY Protoporphyrinoge 95.9 0.0022 4.7E-08 58.6 0.3 37 115-156 4-42 (444)
317 TIGR03197 MnmC_Cterm tRNA U-34 95.9 0.028 6.1E-07 50.6 7.5 48 164-212 133-189 (381)
318 COG2081 Predicted flavoprotein 95.9 0.0023 5.1E-08 56.8 0.4 34 114-152 6-39 (408)
319 TIGR02733 desat_CrtD C-3',4' d 95.9 0.0023 5E-08 59.7 0.2 35 116-155 6-40 (492)
320 TIGR02352 thiamin_ThiO glycine 95.8 0.035 7.5E-07 48.7 7.5 49 164-212 135-192 (337)
321 TIGR00562 proto_IX_ox protopor 95.8 0.0028 6.2E-08 58.5 0.3 37 115-156 6-46 (462)
322 PLN02268 probable polyamine ox 95.7 0.0029 6.3E-08 58.0 0.3 36 116-156 5-40 (435)
323 COG0644 FixC Dehydrogenases (f 95.7 0.0078 1.7E-07 54.6 2.8 29 43-72 12-40 (396)
324 PRK12416 protoporphyrinogen ox 95.7 0.0079 1.7E-07 55.7 2.9 32 43-75 10-47 (463)
325 TIGR02731 phytoene_desat phyto 95.6 0.0029 6.3E-08 58.4 -0.2 36 115-155 3-38 (453)
326 PRK14106 murD UDP-N-acetylmura 95.6 0.019 4.1E-07 52.9 5.1 75 116-218 10-84 (450)
327 PRK13977 myosin-cross-reactive 95.5 0.0091 2E-07 56.2 2.7 32 43-75 31-66 (576)
328 COG2907 Predicted NAD/FAD-bind 95.5 0.0077 1.7E-07 52.7 2.0 31 43-75 17-47 (447)
329 PF03486 HI0933_like: HI0933-l 95.5 0.0026 5.6E-08 57.9 -1.0 34 114-152 3-36 (409)
330 PRK05675 sdhA succinate dehydr 95.5 0.025 5.4E-07 53.8 5.6 48 165-212 125-188 (570)
331 PRK05714 2-octaprenyl-3-methyl 95.5 0.0093 2E-07 54.1 2.6 31 114-149 5-35 (405)
332 PRK10015 oxidoreductase; Provi 95.4 0.011 2.4E-07 54.2 2.8 28 43-71 14-41 (429)
333 PLN02328 lysine-specific histo 95.4 0.01 2.2E-07 58.2 2.6 31 43-74 247-277 (808)
334 KOG2820|consensus 95.3 0.032 6.8E-07 48.7 4.9 31 114-149 10-40 (399)
335 COG0562 Glf UDP-galactopyranos 95.2 0.027 6E-07 48.8 4.4 30 44-74 11-40 (374)
336 PLN02612 phytoene desaturase 95.2 0.013 2.8E-07 55.8 2.7 31 43-74 102-132 (567)
337 PRK10157 putative oxidoreducta 95.2 0.013 2.9E-07 53.7 2.8 29 43-72 14-42 (428)
338 PLN02568 polyamine oxidase 95.2 0.015 3.3E-07 54.9 3.1 32 43-75 14-50 (539)
339 PLN02487 zeta-carotene desatur 95.2 0.0063 1.4E-07 57.7 0.5 39 113-156 77-115 (569)
340 TIGR02730 carot_isom carotene 95.2 0.0058 1.3E-07 57.1 0.3 37 115-156 4-40 (493)
341 PRK07045 putative monooxygenas 95.2 0.0051 1.1E-07 55.5 -0.1 34 113-151 7-40 (388)
342 PF05834 Lycopene_cycl: Lycope 95.2 0.024 5.3E-07 51.0 4.2 31 116-151 4-36 (374)
343 PRK06753 hypothetical protein; 95.2 0.0049 1.1E-07 55.2 -0.3 33 114-151 3-35 (373)
344 PF01494 FAD_binding_3: FAD bi 95.1 0.015 3.3E-07 51.1 2.8 27 43-70 10-36 (356)
345 TIGR00031 UDP-GALP_mutase UDP- 95.1 0.007 1.5E-07 54.4 0.5 37 115-156 5-41 (377)
346 TIGR01790 carotene-cycl lycope 95.0 0.018 3.9E-07 51.9 2.8 31 43-74 8-38 (388)
347 PRK02705 murD UDP-N-acetylmura 95.0 0.044 9.6E-07 50.6 5.4 80 116-218 5-84 (459)
348 COG0579 Predicted dehydrogenas 94.9 0.25 5.3E-06 45.2 9.9 48 165-212 152-210 (429)
349 PRK12416 protoporphyrinogen ox 94.9 0.0077 1.7E-07 55.7 0.3 37 115-156 5-47 (463)
350 TIGR03467 HpnE squalene-associ 94.9 0.02 4.3E-07 51.9 2.9 27 48-75 1-27 (419)
351 KOG2415|consensus 94.9 0.038 8.2E-07 49.6 4.5 31 43-74 85-121 (621)
352 PLN02661 Putative thiazole syn 94.9 0.029 6.3E-07 49.8 3.8 31 43-74 101-132 (357)
353 COG1231 Monoamine oxidase [Ami 94.9 0.021 4.6E-07 51.7 2.9 33 43-76 16-48 (450)
354 PLN00093 geranylgeranyl diphos 94.8 0.0075 1.6E-07 55.7 -0.1 35 110-149 38-72 (450)
355 PRK08163 salicylate hydroxylas 94.8 0.0079 1.7E-07 54.3 -0.0 33 114-151 7-39 (396)
356 PRK09126 hypothetical protein; 94.8 0.0074 1.6E-07 54.4 -0.3 32 114-150 6-37 (392)
357 TIGR01988 Ubi-OHases Ubiquinon 94.7 0.009 1.9E-07 53.6 0.2 31 115-150 3-33 (385)
358 PLN02676 polyamine oxidase 94.7 0.022 4.7E-07 53.2 2.7 32 43-75 35-67 (487)
359 PRK08013 oxidoreductase; Provi 94.7 0.0086 1.9E-07 54.3 -0.0 32 114-150 6-37 (400)
360 COG3573 Predicted oxidoreducta 94.7 0.52 1.1E-05 41.4 10.6 31 43-74 14-46 (552)
361 COG0029 NadB Aspartate oxidase 94.7 0.24 5.1E-06 45.6 9.0 24 43-68 16-39 (518)
362 PRK07364 2-octaprenyl-6-methox 94.7 0.022 4.9E-07 51.7 2.6 27 43-70 27-53 (415)
363 PRK07236 hypothetical protein; 94.7 0.0079 1.7E-07 54.2 -0.3 32 114-150 9-40 (386)
364 PLN02612 phytoene desaturase 94.7 0.02 4.3E-07 54.5 2.4 38 113-155 95-132 (567)
365 PRK06753 hypothetical protein; 94.6 0.022 4.7E-07 51.0 2.4 28 43-71 9-36 (373)
366 PLN02568 polyamine oxidase 94.6 0.012 2.6E-07 55.6 0.7 38 114-156 8-50 (539)
367 PRK12845 3-ketosteroid-delta-1 94.6 0.023 5.1E-07 54.0 2.7 32 43-76 25-56 (564)
368 PLN02529 lysine-specific histo 94.6 0.01 2.3E-07 57.7 0.3 37 114-155 163-199 (738)
369 TIGR02732 zeta_caro_desat caro 94.6 0.0093 2E-07 55.4 -0.0 36 116-156 4-39 (474)
370 PF06100 Strep_67kDa_ant: Stre 94.6 0.11 2.4E-06 47.9 6.7 31 43-74 11-45 (500)
371 COG0654 UbiH 2-polyprenyl-6-me 94.6 0.0091 2E-07 54.0 -0.2 30 114-148 5-34 (387)
372 PRK07608 ubiquinone biosynthes 94.5 0.011 2.3E-07 53.3 0.2 33 114-151 8-40 (388)
373 TIGR01988 Ubi-OHases Ubiquinon 94.5 0.026 5.6E-07 50.6 2.6 27 43-70 8-34 (385)
374 PRK13800 putative oxidoreducta 94.5 0.11 2.4E-06 52.2 7.2 26 43-69 22-47 (897)
375 TIGR02028 ChlP geranylgeranyl 94.5 0.0091 2E-07 54.2 -0.4 32 114-150 3-34 (398)
376 PRK08849 2-octaprenyl-3-methyl 94.5 0.01 2.2E-07 53.5 -0.1 31 114-149 6-36 (384)
377 PRK08020 ubiF 2-octaprenyl-3-m 94.4 0.012 2.7E-07 53.0 0.2 33 112-149 6-38 (391)
378 PRK12837 3-ketosteroid-delta-1 94.3 0.033 7.1E-07 52.4 2.9 32 43-76 16-47 (513)
379 COG0578 GlpA Glycerol-3-phosph 94.3 0.25 5.4E-06 46.3 8.5 31 43-74 21-51 (532)
380 PRK07538 hypothetical protein; 94.3 0.011 2.4E-07 53.8 -0.3 32 114-150 3-34 (413)
381 TIGR01984 UbiH 2-polyprenyl-6- 94.3 0.013 2.8E-07 52.7 0.1 31 115-150 3-34 (382)
382 PRK12844 3-ketosteroid-delta-1 94.2 0.035 7.7E-07 52.7 3.0 33 43-76 15-47 (557)
383 PRK07494 2-octaprenyl-6-methox 94.2 0.013 2.8E-07 52.9 -0.0 33 113-150 9-41 (388)
384 COG1004 Ugd Predicted UDP-gluc 94.2 0.085 1.8E-06 47.1 5.0 81 116-212 5-87 (414)
385 PRK07045 putative monooxygenas 94.2 0.032 7E-07 50.3 2.5 27 43-70 14-40 (388)
386 COG0562 Glf UDP-galactopyranos 94.1 0.02 4.3E-07 49.6 1.0 35 116-155 6-40 (374)
387 PRK06126 hypothetical protein; 94.1 0.014 3.1E-07 55.2 0.1 33 113-150 9-41 (545)
388 PRK05335 tRNA (uracil-5-)-meth 94.1 0.013 2.9E-07 53.2 -0.1 30 116-150 7-36 (436)
389 PRK08255 salicylyl-CoA 5-hydro 94.1 0.12 2.5E-06 51.2 6.3 26 43-69 9-36 (765)
390 PRK09126 hypothetical protein; 94.1 0.036 7.9E-07 49.9 2.6 27 43-70 12-38 (392)
391 TIGR02032 GG-red-SF geranylger 94.0 0.041 8.9E-07 47.1 2.8 29 43-72 9-37 (295)
392 PRK12834 putative FAD-binding 94.0 0.045 9.8E-07 51.9 3.1 33 43-76 13-47 (549)
393 PRK05868 hypothetical protein; 93.9 0.041 8.9E-07 49.5 2.7 28 43-71 10-37 (372)
394 TIGR02360 pbenz_hydroxyl 4-hyd 93.9 0.036 7.9E-07 50.1 2.3 26 43-69 11-36 (390)
395 PRK06617 2-octaprenyl-6-methox 93.9 0.016 3.4E-07 52.2 -0.2 30 114-148 4-33 (374)
396 PRK08849 2-octaprenyl-3-methyl 93.9 0.038 8.3E-07 49.8 2.4 25 43-68 12-36 (384)
397 COG0445 GidA Flavin-dependent 93.9 0.089 1.9E-06 48.9 4.6 32 113-149 6-37 (621)
398 PF01266 DAO: FAD dependent ox 93.8 0.014 3.1E-07 51.3 -0.5 29 116-149 4-32 (358)
399 TIGR03377 glycerol3P_GlpA glyc 93.8 0.17 3.6E-06 47.6 6.7 48 165-212 127-189 (516)
400 PRK06475 salicylate hydroxylas 93.8 0.043 9.4E-07 49.7 2.6 27 43-70 11-37 (400)
401 PRK05868 hypothetical protein; 93.8 0.018 3.8E-07 51.8 -0.0 31 116-151 6-36 (372)
402 PRK07538 hypothetical protein; 93.8 0.043 9.4E-07 50.0 2.5 28 43-71 9-36 (413)
403 TIGR03219 salicylate_mono sali 93.8 0.016 3.5E-07 52.8 -0.3 33 114-151 3-36 (414)
404 COG0569 TrkA K+ transport syst 93.7 0.054 1.2E-06 45.2 2.8 31 115-150 4-34 (225)
405 PRK07588 hypothetical protein; 93.7 0.045 9.7E-07 49.4 2.5 27 43-70 9-35 (391)
406 PLN03000 amine oxidase 93.7 0.045 9.6E-07 54.1 2.6 32 43-75 193-224 (881)
407 KOG1346|consensus 93.7 0.094 2E-06 47.1 4.3 86 117-217 353-452 (659)
408 PRK06847 hypothetical protein; 93.7 0.048 1E-06 48.8 2.6 26 43-69 13-38 (375)
409 PTZ00363 rab-GDP dissociation 93.7 0.029 6.4E-07 51.6 1.2 39 113-156 6-44 (443)
410 TIGR02360 pbenz_hydroxyl 4-hyd 93.6 0.018 4E-07 52.0 -0.1 31 115-150 6-36 (390)
411 PRK01438 murD UDP-N-acetylmura 93.6 0.18 3.9E-06 46.9 6.4 49 43-108 25-73 (480)
412 PRK05732 2-octaprenyl-6-methox 93.6 0.018 3.9E-07 51.9 -0.2 31 113-148 5-38 (395)
413 TIGR03219 salicylate_mono sali 93.6 0.05 1.1E-06 49.5 2.6 28 43-71 9-37 (414)
414 PRK08013 oxidoreductase; Provi 93.6 0.052 1.1E-06 49.3 2.6 27 43-70 12-38 (400)
415 TIGR00137 gid_trmFO tRNA:m(5)U 93.5 0.019 4.1E-07 52.4 -0.2 31 116-151 5-35 (433)
416 TIGR01984 UbiH 2-polyprenyl-6- 93.5 0.05 1.1E-06 48.8 2.4 26 43-69 8-34 (382)
417 KOG2404|consensus 93.5 0.13 2.9E-06 44.7 4.8 35 115-154 13-47 (477)
418 PRK08773 2-octaprenyl-3-methyl 93.5 0.054 1.2E-06 48.9 2.6 26 43-69 15-40 (392)
419 PRK06475 salicylate hydroxylas 93.5 0.022 4.8E-07 51.6 0.1 30 116-150 7-36 (400)
420 TIGR00275 flavoprotein, HI0933 93.5 0.018 4E-07 52.3 -0.4 33 116-153 2-34 (400)
421 PRK07608 ubiquinone biosynthes 93.5 0.055 1.2E-06 48.6 2.7 27 43-70 14-40 (388)
422 PRK12843 putative FAD-binding 93.5 0.056 1.2E-06 51.6 2.8 33 43-76 25-57 (578)
423 PLN02676 polyamine oxidase 93.4 0.025 5.3E-07 52.8 0.3 38 114-156 29-67 (487)
424 PRK12839 hypothetical protein; 93.4 0.057 1.2E-06 51.5 2.8 33 43-76 17-49 (572)
425 PTZ00383 malate:quinone oxidor 93.4 0.63 1.4E-05 43.6 9.6 153 46-212 57-272 (497)
426 PRK07236 hypothetical protein; 93.3 0.054 1.2E-06 48.9 2.3 25 43-68 15-39 (386)
427 PRK11259 solA N-methyltryptoph 93.3 0.026 5.6E-07 50.5 0.2 32 114-150 6-37 (376)
428 TIGR02023 BchP-ChlP geranylger 93.2 0.055 1.2E-06 48.9 2.2 24 43-67 9-32 (388)
429 COG1231 Monoamine oxidase [Ami 93.2 0.033 7.3E-07 50.4 0.8 35 114-153 10-44 (450)
430 PRK06184 hypothetical protein; 93.2 0.062 1.3E-06 50.3 2.6 27 43-70 12-38 (502)
431 PLN02328 lysine-specific histo 93.1 0.026 5.7E-07 55.4 0.1 37 114-155 241-277 (808)
432 PRK08850 2-octaprenyl-6-methox 93.1 0.025 5.4E-07 51.4 -0.1 30 114-148 7-36 (405)
433 PLN02976 amine oxidase 93.1 0.062 1.3E-06 55.6 2.6 32 43-75 702-733 (1713)
434 PF00890 FAD_binding_2: FAD bi 93.1 0.022 4.8E-07 51.8 -0.5 33 116-153 4-36 (417)
435 PRK07121 hypothetical protein; 93.0 0.03 6.4E-07 52.4 0.2 37 112-153 21-57 (492)
436 PRK08243 4-hydroxybenzoate 3-m 93.0 0.061 1.3E-06 48.6 2.3 26 43-69 11-36 (392)
437 PRK04308 murD UDP-N-acetylmura 93.0 0.2 4.3E-06 46.2 5.7 73 116-219 10-84 (445)
438 PRK06481 fumarate reductase fl 93.0 0.027 5.8E-07 52.8 -0.1 37 112-153 62-98 (506)
439 PRK13977 myosin-cross-reactive 93.0 0.03 6.4E-07 52.8 0.1 37 114-155 25-65 (576)
440 PLN02927 antheraxanthin epoxid 93.0 0.027 5.8E-07 54.3 -0.2 34 111-149 81-114 (668)
441 PRK12835 3-ketosteroid-delta-1 92.9 0.072 1.6E-06 50.9 2.7 31 43-74 20-50 (584)
442 PRK12409 D-amino acid dehydrog 92.9 0.032 7E-07 50.7 0.2 31 116-151 6-36 (410)
443 TIGR01816 sdhA_forward succina 92.9 0.17 3.8E-06 48.1 5.1 48 165-212 118-180 (565)
444 PRK12837 3-ketosteroid-delta-1 92.7 0.039 8.4E-07 51.9 0.5 35 113-153 9-43 (513)
445 KOG0685|consensus 92.7 0.035 7.6E-07 50.5 0.2 38 114-156 24-62 (498)
446 PRK05335 tRNA (uracil-5-)-meth 92.7 0.082 1.8E-06 48.2 2.5 26 43-69 11-36 (436)
447 TIGR01813 flavo_cyto_c flavocy 92.7 0.037 8.1E-07 50.8 0.4 33 116-153 4-37 (439)
448 PLN02985 squalene monooxygenas 92.6 0.035 7.5E-07 52.2 0.0 32 113-149 45-76 (514)
449 TIGR00137 gid_trmFO tRNA:m(5)U 92.5 0.084 1.8E-06 48.3 2.4 26 43-69 9-34 (433)
450 PRK08244 hypothetical protein; 92.5 0.087 1.9E-06 49.2 2.6 26 43-69 11-36 (493)
451 PRK12842 putative succinate de 92.5 0.038 8.2E-07 52.7 0.2 36 113-153 11-46 (574)
452 PRK06617 2-octaprenyl-6-methox 92.5 0.081 1.8E-06 47.5 2.3 25 43-68 10-34 (374)
453 PRK05192 tRNA uridine 5-carbox 92.5 0.083 1.8E-06 50.3 2.4 29 43-72 13-42 (618)
454 KOG1276|consensus 92.5 0.049 1.1E-06 49.0 0.8 42 109-157 11-54 (491)
455 PRK08274 tricarballylate dehyd 92.4 0.041 8.8E-07 51.0 0.2 33 113-150 6-38 (466)
456 PTZ00367 squalene epoxidase; P 92.4 0.038 8.2E-07 52.5 -0.0 33 112-149 34-66 (567)
457 KOG1276|consensus 92.3 0.1 2.2E-06 47.0 2.6 33 43-76 20-54 (491)
458 KOG2853|consensus 92.3 1.1 2.5E-05 39.4 8.8 154 46-212 98-319 (509)
459 PRK12266 glpD glycerol-3-phosp 92.2 0.043 9.4E-07 51.5 0.2 34 112-150 7-40 (508)
460 PRK08020 ubiF 2-octaprenyl-3-m 92.2 0.094 2E-06 47.3 2.4 25 43-68 14-38 (391)
461 PRK08294 phenol 2-monooxygenas 92.1 0.044 9.5E-07 52.9 0.1 35 111-150 32-67 (634)
462 PRK07494 2-octaprenyl-6-methox 92.1 0.11 2.4E-06 46.8 2.7 27 43-70 16-42 (388)
463 PRK00711 D-amino acid dehydrog 92.0 0.043 9.2E-07 49.9 -0.1 33 114-151 3-35 (416)
464 TIGR01377 soxA_mon sarcosine o 92.0 0.047 1E-06 48.9 0.1 31 115-150 4-34 (380)
465 PRK13369 glycerol-3-phosphate 91.9 0.052 1.1E-06 50.9 0.3 34 112-150 7-40 (502)
466 PRK11728 hydroxyglutarate oxid 91.9 0.048 1E-06 49.3 0.0 33 114-151 5-39 (393)
467 PRK02705 murD UDP-N-acetylmura 91.8 0.3 6.6E-06 45.1 5.2 27 42-69 8-34 (459)
468 TIGR02462 pyranose_ox pyranose 91.8 0.06 1.3E-06 50.7 0.6 36 115-155 4-39 (544)
469 PF01593 Amino_oxidase: Flavin 91.7 0.065 1.4E-06 48.2 0.7 29 127-155 2-30 (450)
470 PRK08850 2-octaprenyl-6-methox 91.6 0.12 2.5E-06 47.0 2.2 24 43-67 13-36 (405)
471 PLN03000 amine oxidase 91.6 0.052 1.1E-06 53.7 -0.1 37 114-155 187-223 (881)
472 TIGR01989 COQ6 Ubiquinone bios 91.6 0.053 1.1E-06 49.9 -0.0 30 114-148 3-36 (437)
473 PF02254 TrkA_N: TrkA-N domain 91.6 0.11 2.4E-06 38.1 1.7 71 116-212 3-73 (116)
474 PRK00421 murC UDP-N-acetylmura 91.5 0.43 9.3E-06 44.2 6.0 71 116-219 12-83 (461)
475 COG2907 Predicted NAD/FAD-bind 91.5 0.095 2.1E-06 46.1 1.4 38 112-155 9-46 (447)
476 PRK08132 FAD-dependent oxidore 91.4 0.14 3.1E-06 48.5 2.7 27 43-70 32-58 (547)
477 KOG3851|consensus 91.3 0.05 1.1E-06 47.2 -0.4 34 113-151 41-76 (446)
478 PRK07843 3-ketosteroid-delta-1 91.3 0.059 1.3E-06 51.2 -0.0 37 112-153 8-44 (557)
479 PF07992 Pyr_redox_2: Pyridine 91.3 0.16 3.5E-06 40.9 2.6 28 43-71 8-35 (201)
480 PRK07333 2-octaprenyl-6-methox 91.3 0.14 2.9E-06 46.4 2.3 47 166-212 111-166 (403)
481 PRK06185 hypothetical protein; 91.2 0.14 3E-06 46.5 2.3 26 43-69 15-40 (407)
482 PF13434 K_oxygenase: L-lysine 91.2 0.096 2.1E-06 46.5 1.2 31 116-151 195-227 (341)
483 TIGR03364 HpnW_proposed FAD de 91.1 0.069 1.5E-06 47.7 0.2 31 115-150 4-34 (365)
484 PRK12834 putative FAD-binding 91.1 0.067 1.4E-06 50.8 0.1 36 113-153 6-43 (549)
485 PLN02463 lycopene beta cyclase 91.0 0.17 3.6E-06 46.8 2.7 26 43-69 37-62 (447)
486 PLN02927 antheraxanthin epoxid 91.0 0.14 3.1E-06 49.4 2.2 25 43-68 90-114 (668)
487 COG0665 DadA Glycine/D-amino a 91.0 0.07 1.5E-06 47.8 0.2 33 114-151 7-39 (387)
488 PRK05732 2-octaprenyl-6-methox 90.9 0.14 3.1E-06 46.1 2.1 24 43-67 12-38 (395)
489 PRK12835 3-ketosteroid-delta-1 90.8 0.073 1.6E-06 50.9 0.1 36 113-153 13-48 (584)
490 PRK11101 glpA sn-glycerol-3-ph 90.8 0.08 1.7E-06 50.2 0.3 33 113-150 8-40 (546)
491 PRK12844 3-ketosteroid-delta-1 90.6 0.074 1.6E-06 50.5 -0.0 36 113-153 8-43 (557)
492 PRK12845 3-ketosteroid-delta-1 90.6 0.093 2E-06 49.9 0.6 37 111-153 16-52 (564)
493 PLN02464 glycerol-3-phosphate 90.6 0.093 2E-06 50.6 0.6 34 112-150 72-105 (627)
494 PLN02976 amine oxidase 90.5 0.08 1.7E-06 54.9 0.1 37 115-156 697-733 (1713)
495 PRK06183 mhpA 3-(3-hydroxyphen 90.4 0.2 4.4E-06 47.3 2.7 28 43-71 19-46 (538)
496 PRK11445 putative oxidoreducta 90.3 0.19 4.1E-06 44.8 2.3 26 43-70 10-35 (351)
497 TIGR01789 lycopene_cycl lycope 90.3 0.22 4.7E-06 44.8 2.7 29 43-72 8-38 (370)
498 TIGR01470 cysG_Nterm siroheme 90.2 0.37 8E-06 39.5 3.8 34 109-149 9-42 (205)
499 TIGR02462 pyranose_ox pyranose 90.2 0.22 4.8E-06 47.0 2.7 32 42-74 8-39 (544)
500 PRK01710 murD UDP-N-acetylmura 90.1 0.41 8.9E-06 44.3 4.4 76 116-219 19-94 (458)
No 1
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=5.7e-30 Score=250.22 Aligned_cols=191 Identities=27% Similarity=0.354 Sum_probs=152.0
Q ss_pred Ccchh--HHHhhhhhhccccccceeeccccchhcccccc-------------------ccccc-----ccchhchHHHHH
Q psy12810 1 MIWDH--QLEKRLDNTLIQECEPVLSGKVPRIDLEYTIN-------------------NECRA-----FTATLSYHISIQ 54 (276)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-----~paGl~aA~~~a 54 (276)
.|||| |||.+|.+. + +||.|+.||||..|+.+. ++... +||||+||.. |
T Consensus 251 rVCp~~~~CE~~C~~~--~--~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~-L 325 (944)
T PRK12779 251 RVCPQELQCQGVCTHT--K--RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYL-L 325 (944)
T ss_pred CcCCCccCHHHhccCC--C--cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHH-H
Confidence 48999 799999998 6 799999999999887321 11111 6999999999 8
Q ss_pred hhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchh
Q psy12810 55 HLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLI 134 (276)
Q Consensus 55 a~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~ 134 (276)
+++||+|||||+.+.+||+++||+|.+++++++++++.++++++||+|++|+.+++++.+
T Consensus 326 ar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~-------------------- 385 (944)
T PRK12779 326 AVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL-------------------- 385 (944)
T ss_pred HHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH--------------------
Confidence 999999999999999999999999999999999999999999999999988754332211
Q ss_pred hhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCC
Q psy12810 135 VNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWP 214 (276)
Q Consensus 135 l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p 214 (276)
.+-....||+||+|||++.|
T Consensus 386 ------------------------------------------------------------~~l~~~~yDAV~LAtGA~~p 405 (944)
T PRK12779 386 ------------------------------------------------------------EDLKAAGFWKIFVGTGAGLP 405 (944)
T ss_pred ------------------------------------------------------------HHhccccCCEEEEeCCCCCC
Confidence 00011359999999999558
Q ss_pred CCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCC-C-CCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 215 RDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVS-P-ISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 215 ~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~-~-~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
+.+++||.+.+||+++.+|+...+.......... . ....+|+|+|||||++|+|+|..+.|+
T Consensus 406 r~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~ 469 (944)
T PRK12779 406 TFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRL 469 (944)
T ss_pred CcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHc
Confidence 9999999999999999999987554321110000 0 013689999999999999999999875
No 2
>PRK12831 putative oxidoreductase; Provisional
Probab=99.96 E-value=1.8e-29 Score=231.65 Aligned_cols=208 Identities=31% Similarity=0.455 Sum_probs=160.0
Q ss_pred Ccchh--HHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWDH--QLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.|||| |||.+|.|+.++ +||+|+.|+||+.|....+..+. ..
T Consensus 91 rvC~~~~~Ce~~C~r~~~~--~~v~I~~l~r~~~~~~~~~~~~~---------------------~~------------- 134 (464)
T PRK12831 91 RVCPQESQCEGKCVLGIKG--EPVAIGKLERFVADWARENGIDL---------------------SE------------- 134 (464)
T ss_pred ccCCCCCChHHHhcCCCCC--CCeehhHHHHHHHHHHHHcCCCC---------------------CC-------------
Confidence 48998 999999999999 99999999999988654322110 00
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
.....++++.| ||+||+ |+++|.+|++.|++|+|||+.+.+||.+.++
T Consensus 135 -------------------------~~~~~~~~V~I--IG~GpA-----Gl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 182 (464)
T PRK12831 135 -------------------------TEEKKGKKVAV--IGSGPA-----GLTCAGDLAKMGYDVTIFEALHEPGGVLVYG 182 (464)
T ss_pred -------------------------CcCCCCCEEEE--ECcCHH-----HHHHHHHHHhCCCeEEEEecCCCCCCeeeec
Confidence 00111345555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHH-HHHHHHHHHHhcCcEEEeeeeeccccchhh--hhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHH
Q psy12810 159 IPTMKLSKE-VVQRRVKLLAAEGIEFKTNINVGKDIAAKE--LYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLE 235 (276)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~ 235 (276)
+|.+.++.+ +.....+++++.|+++++++.+..+...++ ..+.||.||+|||++.|+.+++||.+.++|+++.+|+.
T Consensus 183 ip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~ 262 (464)
T PRK12831 183 IPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLT 262 (464)
T ss_pred CCCccCCccHHHHHHHHHHHHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHH
Confidence 998777665 777778889999999999998754433222 23569999999998338999999999999999999887
Q ss_pred HHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 236 SWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
..................+|+|+|||||++|+|+|..+.|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~ 303 (464)
T PRK12831 263 RVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRL 303 (464)
T ss_pred HHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHc
Confidence 64322111000000125789999999999999999998764
No 3
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=8.8e-29 Score=227.89 Aligned_cols=208 Identities=44% Similarity=0.702 Sum_probs=161.5
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
+|||||||.+|.|+..+ .||+|+.|+||++++....... . + .
T Consensus 95 ~vC~~~Ce~~C~~~~~~--~~v~i~~l~r~~~~~~~~~~~~------------------~-------~-----------~ 136 (471)
T PRK12810 95 RVCPAPCEGACTLNINF--GPVTIKNIERYIIDKAFEEGWV------------------K-------P-----------D 136 (471)
T ss_pred CcCCchhHHhccCCCCC--CCccHHHHHHHHHHHHHHcCCC------------------C-------C-----------C
Confidence 58999999999999999 9999999999998864431110 0 0 0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
. .....++++.| ||+||+ |+++|..|++.|++|++||+.+.+||.+++++|
T Consensus 137 ~----------------------~~~~~~~~VvI--IGaGpA-----Gl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip 187 (471)
T PRK12810 137 P----------------------PVKRTGKKVAV--VGSGPA-----GLAAADQLARAGHKVTVFERADRIGGLLRYGIP 187 (471)
T ss_pred C----------------------CcCCCCCEEEE--ECcCHH-----HHHHHHHHHhCCCcEEEEecCCCCCceeeecCC
Confidence 0 00111345555 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+..+.++.....+++.+.|+++++++.+..+.+.......||+||+|||+..|+.+++||.+.++++++.+|+......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~ 267 (471)
T PRK12810 188 DFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRR 267 (471)
T ss_pred cccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhh
Confidence 88888888888888899999999999988654444444568999999999975778899999889999988888764322
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.............+|+|+|||||++|+|+|..+++
T Consensus 268 ~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~ 302 (471)
T PRK12810 268 VLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIR 302 (471)
T ss_pred hccccccccccCCCCEEEEECCcHHHHHHHHHHHH
Confidence 11110000012568999999999999999987665
No 4
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=1.8e-28 Score=241.60 Aligned_cols=207 Identities=28% Similarity=0.377 Sum_probs=163.8
Q ss_pred Ccchh--HHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWDH--QLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.|||| |||.+|.|+..+ +||.|+.||||+.|+...+... .
T Consensus 382 rvCp~~~~Ce~~C~~~~~~--~pv~I~~ler~~~d~~~~~~~~------------------------------------~ 423 (1006)
T PRK12775 382 RVCPQETQCEAQCIIAKKH--ESVGIGRLERFVGDNARAKPVK------------------------------------P 423 (1006)
T ss_pred CcCCCCCCHHHhCcCCCCC--CCeeecHHHHHHHHHHHHcCCC------------------------------------C
Confidence 48998 999999999999 8999999999998865431110 0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
|. ....++++.| ||+||+ |+++|.+|++.|++|+|||+.+.+||.++++
T Consensus 424 ~~------------------------~~~~~~kVaI--IG~GPA-----GLsaA~~La~~G~~VtV~E~~~~~GG~l~~g 472 (1006)
T PRK12775 424 PR------------------------FSKKLGKVAI--CGSGPA-----GLAAAADLVKYGVDVTVYEALHVVGGVLQYG 472 (1006)
T ss_pred CC------------------------CCCCCCEEEE--ECCCHH-----HHHHHHHHHHcCCcEEEEecCCCCcceeecc
Confidence 00 0011355555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhh--hcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL--YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLES 236 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~ 236 (276)
+|.+..+++++....+++.+.||+|++++.+..+.+-... ...||+||||||++.|+.+++||.+.++|+++.+|++.
T Consensus 473 ip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~ 552 (1006)
T PRK12775 473 IPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTR 552 (1006)
T ss_pred CCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHH
Confidence 9999999999999999999999999999877554433332 24699999999985488999999988999999999987
Q ss_pred HHHhhcCCCCCCC-CCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 237 WQKKQMGNENVSP-ISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 237 ~~~~~~~~~~~~~-~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
.+........... ....+|+|+|||||++|+|+|..+.|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rl 593 (1006)
T PRK12775 553 VNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRL 593 (1006)
T ss_pred HHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHc
Confidence 6532110000000 124789999999999999999998874
No 5
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.95 E-value=3.6e-28 Score=235.07 Aligned_cols=201 Identities=25% Similarity=0.413 Sum_probs=156.7
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
+|||||||.+|+|+.++ +||+|+.|+|+++|+...+..+.. +
T Consensus 490 rVCph~Ce~~C~R~~~d--~pV~I~~Lkr~a~d~~~~~~~~~~-----------------------------------~- 531 (1019)
T PRK09853 490 HICDHQCQYNCTRLDYD--EAVNIRELKKVALEKGWDEYKQRW-----------------------------------H- 531 (1019)
T ss_pred CcCCchhHHHhcCCCCC--CCeeccHHHHHHHhhHHHhccccc-----------------------------------C-
Confidence 58999999999999999 899999999999887543211100 0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
.+. ....++++.| ||+||+ |+++|.+|++.|++|+|||+.+.+||.+++.+|
T Consensus 532 --~~~-------------------~~~tgKkVaI--IGgGPA-----GLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP 583 (1019)
T PRK09853 532 --KPA-------------------GIGSRKKVAV--IGAGPA-----GLAAAYFLARAGHPVTVFEREENAGGVVKNIIP 583 (1019)
T ss_pred --CCC-------------------ccCCCCcEEE--ECCCHH-----HHHHHHHHHHcCCeEEEEecccccCcceeeecc
Confidence 000 0112455566 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.++.+.+.+....+++.+.|++|++++.+..+.. ......||+||||||++.+..++++|.+ .+++++.+++...+..
T Consensus 584 ~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~le-~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~ 661 (1019)
T PRK09853 584 QFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVE-QLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNK 661 (1019)
T ss_pred cccccHHHHHHHHHHHHHcCCEEEeCceeEEEhh-hheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhh
Confidence 9888888888888899999999999987732221 1123469999999999745667888765 6788888888776322
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
.. ....+|+|+|||||++|+|+|..+.|+
T Consensus 662 ~~-------~~~~GKrVVVIGGGnVAmD~Ar~a~Rl 690 (1019)
T PRK09853 662 GT-------ALKLGKHVVVVGGGNTAMDAARAALRV 690 (1019)
T ss_pred cc-------cccCCCEEEEECCChHHHHHHHHHHhc
Confidence 11 125689999999999999999887753
No 6
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=1.2e-27 Score=220.67 Aligned_cols=209 Identities=46% Similarity=0.713 Sum_probs=163.0
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
+|||||||.+|.|...+ .||+|+.|+||+.++....+... .
T Consensus 95 rvC~~~Ce~~C~~~~~~--~~v~I~~l~r~~~~~~~~~~~~~-------------------------~------------ 135 (485)
T TIGR01317 95 RVCPAPCEGACTLGISE--DPVGIKSIERIIIDKGFQEGWVQ-------------------------P------------ 135 (485)
T ss_pred CcCChhhHHhccCCCCC--CCcchhHHHHHHHHHHHHcCCCC-------------------------C------------
Confidence 58999999999999999 99999999999987755422110 0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
. ......++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||.+++++|
T Consensus 136 ~---------------------~~~~~~~~~V~I--IGaG~a-----Gl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip 187 (485)
T TIGR01317 136 R---------------------PPSKRTGKKVAV--VGSGPA-----GLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP 187 (485)
T ss_pred C---------------------CCcCCCCCEEEE--ECCcHH-----HHHHHHHHHHcCCeEEEEecCCCCCceeeccCC
Confidence 0 001111344455 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+..++++.....+++++.|+++++++.+..+.+.+.....||.||+|||++.|..+++||.+.+||++..+|+......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~ 267 (485)
T TIGR01317 188 NMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKA 267 (485)
T ss_pred CccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhh
Confidence 88888888888888899999999999988655444445678999999999975788999999999999988888765432
Q ss_pred hcCCC-CCC-CCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 241 QMGNE-NVS-PISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 241 ~~~~~-~~~-~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
..... ..+ .....+|+|+|||||++|+|+|..++++
T Consensus 268 ~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ 305 (485)
T TIGR01317 268 LLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRH 305 (485)
T ss_pred hccccccccccccCCCCEEEEECCcHHHHHHHHHHHHc
Confidence 21100 000 0124689999999999999998877653
No 7
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=1.5e-27 Score=218.36 Aligned_cols=209 Identities=31% Similarity=0.464 Sum_probs=160.3
Q ss_pred Ccchh--HHHhhhhhhc----cccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 1 MIWDH--QLEKRLDNTL----IQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 1 ~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
.|||| |||.+|.|+. .+ +||.|+.|+||+.|........ +. .
T Consensus 79 rvC~~~~~Ce~~C~~~~~~~~~~--~~v~i~~l~~~~~~~~~~~~~~-------------------~~-----~------ 126 (449)
T TIGR01316 79 RVCPQERQCEGQCTVGKMFKDVG--KPVSIGALERFVADWERQHGIE-------------------TE-----P------ 126 (449)
T ss_pred cCCCCccchHhhCcCCCcCCCCC--CCccHHHHHHHHHhHHHhcCCC-------------------cC-----C------
Confidence 58999 9999999887 88 9999999999998865432111 00 0
Q ss_pred eecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcccee
Q psy12810 75 QYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL 154 (276)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~ 154 (276)
.+ ....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||.
T Consensus 127 ---~~-------------------------~~~~~~~V~I--IG~G~a-----Gl~aA~~l~~~G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 127 ---EK-------------------------APSTHKKVAV--IGAGPA-----GLACASELAKAGHSVTVFEALHKPGGV 171 (449)
T ss_pred ---CC-------------------------CCCCCCEEEE--ECcCHH-----HHHHHHHHHHCCCcEEEEecCCCCCcE
Confidence 00 0011244555 999999 999999999999999999999999999
Q ss_pred eeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHH
Q psy12810 155 LQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFL 234 (276)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l 234 (276)
+.+++|.+..++++.....+.+.+.|+++++++.+..++........||+||+|||+..|+.+++||.+.++++++.+|+
T Consensus 172 l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l 251 (449)
T TIGR01316 172 VTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFL 251 (449)
T ss_pred eeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHH
Confidence 99999888888888888888899999999999877544443334457999999999833888999999989999998887
Q ss_pred HHHHHhhcCCCCC-CCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 235 ESWQKKQMGNENV-SPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
............. ......+|+|+|||||++|+|+|..+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~ 294 (449)
T TIGR01316 252 TRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRL 294 (449)
T ss_pred HHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 7644321110000 00124689999999999999999998764
No 8
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.94 E-value=4.1e-27 Score=224.04 Aligned_cols=201 Identities=32% Similarity=0.517 Sum_probs=159.3
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
.|||||||.+|.|+..+ +||.|+.|+||+.+....+..+.. |.
T Consensus 145 rvC~~~Ce~~C~r~~~~--~~v~i~~l~r~~~~~~~~~~~~~~-----------------------------------~~ 187 (652)
T PRK12814 145 RICPAPCEEACRRHGVD--EPVSICALKRYAADRDMESAERYI-----------------------------------PE 187 (652)
T ss_pred CCcCchhhHHHcCCCCC--CCcchhHHHHHHHHHHHhcCcccC-----------------------------------CC
Confidence 58999999999999999 899999999998775443111100 00
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
.....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||.+++++|
T Consensus 188 -----------------------~~~~~~k~VaI--IGaGpA-----Gl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip 237 (652)
T PRK12814 188 -----------------------RAPKSGKKVAI--IGAGPA-----GLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIP 237 (652)
T ss_pred -----------------------CCCCCCCEEEE--ECCCHH-----HHHHHHHHHHCCCcEEEEecCCCCCceeeecCC
Confidence 00011345555 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+..++++.....+.+.+.|+++++++.+..+.+.......||.||+|||++.+..+++||.+.++++...++++.....
T Consensus 238 ~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~ 317 (652)
T PRK12814 238 RFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALG 317 (652)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcC
Confidence 88888888888888899999999999876544433334456999999999973467889998889999888887764321
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
. ....+|+|+|||||++|+|+|..++++
T Consensus 318 ~--------~~~~gk~VvVIGgG~~a~e~A~~l~~~ 345 (652)
T PRK12814 318 T--------ALHPGKKVVVIGGGNTAIDAARTALRL 345 (652)
T ss_pred C--------cccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 1 125789999999999999999987753
No 9
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=1.2e-26 Score=224.49 Aligned_cols=210 Identities=28% Similarity=0.427 Sum_probs=161.7
Q ss_pred Ccchh--HHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWDH--QLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.|||| |||.+|.|...+ .+||.|+.||||+.|+......+ -+
T Consensus 380 rvC~~~~~Ce~~c~~~~~~-~~~v~i~~l~r~~~d~~~~~~~~-----------------------------------~~ 423 (752)
T PRK12778 380 RVCPQEKQCESKCIHGKMG-EEAVAIGYLERFVADYERESGNI-----------------------------------SV 423 (752)
T ss_pred CcCCCcCchHHhcccCCCC-CCCcCHHHHHHHHHHHHHHhCCC-----------------------------------CC
Confidence 48997 999999999765 25999999999998854221100 00
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
|.. ....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||+++++
T Consensus 424 ~~~-----------------------~~~~~~~V~I--IGaGpA-----Gl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 473 (752)
T PRK12778 424 PEV-----------------------AEKNGKKVAV--IGSGPA-----GLSFAGDLAKRGYDVTVFEALHEIGGVLKYG 473 (752)
T ss_pred CCC-----------------------CCCCCCEEEE--ECcCHH-----HHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 000 1122455555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhh-hcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL-YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESW 237 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~ 237 (276)
+|.+.+++++.....+.+.+.||+|++++.+..+++.++. ...||+||||||++.|+.+++||.+.++|+++.+|+...
T Consensus 474 ip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~ 553 (752)
T PRK12778 474 IPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRV 553 (752)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHH
Confidence 9998889888888888899999999999888655443333 456999999999843889999999999999999988765
Q ss_pred HHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 238 QKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 238 ~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
................+|+|+|||||++|+|+|..+.|+
T Consensus 554 ~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~ 592 (752)
T PRK12778 554 NLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRL 592 (752)
T ss_pred hhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHc
Confidence 432211000000125689999999999999999998764
No 10
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.94 E-value=1.2e-26 Score=225.47 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=152.0
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
.|||||||.+|+|..++ +||+|+.|+||++|+......+. +
T Consensus 488 rVC~h~Ce~~C~R~~~d--~pV~I~~Lkr~a~d~~~~~~~~~-------------------------------~------ 528 (1012)
T TIGR03315 488 TICDHQCQYKCTRLDYD--ESVNIREMKKVAAEKGYDEYKTR-------------------------------W------ 528 (1012)
T ss_pred CcCCcchHHHhcCCCCC--CCCcccHHHHHHHhhHHHhcCcc-------------------------------C------
Confidence 58999999999999999 99999999999988754321100 0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
..+ .....++++.| ||+||+ |+++|.+|++.|++|+|||+.+.+||.+++.+|
T Consensus 529 -~~~-------------------~~~~~~kkVaI--IGGGPA-----GLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP 581 (1012)
T TIGR03315 529 -HKP-------------------QGKSSAHKVAV--IGAGPA-----GLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIP 581 (1012)
T ss_pred -CCC-------------------CCCCCCCcEEE--ECCCHH-----HHHHHHHHHHCCCeEEEEecccccCceeeeccc
Confidence 000 00011345555 999999 999999999999999999999999999999899
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+..+.+.+....+++.+.||+|++++....... ......||+||+|||++.+..++++|.+ .+++.+.++++.....
T Consensus 582 ~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d~~ve-~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~ 659 (1012)
T TIGR03315 582 EFRISAESIQKDIELVKFHGVEFKYGCSPDLTVA-ELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEG 659 (1012)
T ss_pred ccCCCHHHHHHHHHHHHhcCcEEEEecccceEhh-hhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhcc
Confidence 8888888888888888999999999854321111 1123569999999999745666787754 5677777777765421
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.. ....+|+|+|||||++|+|+|..+.|
T Consensus 660 ~~-------~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 660 PT-------INPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred cc-------ccccCCeEEEECCCHHHHHHHHHHHH
Confidence 10 02468999999999999999998775
No 11
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=7.4e-26 Score=214.58 Aligned_cols=207 Identities=26% Similarity=0.411 Sum_probs=160.7
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
.|||||||.+|.|+..+ +||.|+.|+|++.|...... +.-.+..
T Consensus 234 ~vC~~~Ce~~C~~~~~~--~~~~i~~~~~~~~~~~~~~~-------------------~~~~~~~--------------- 277 (604)
T PRK13984 234 RVCTHKCETVCSIGHRG--EPIAIRWLKRYIVDNVPVEK-------------------YSEILDD--------------- 277 (604)
T ss_pred CcCCchHHHhhcccCCC--CCeEeCcHHHHHHhHHHHcC-------------------cccccCC---------------
Confidence 48999999999999999 89999999999988654210 0000000
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
.....++++.| ||+||+ |+.+|..|++.|++|+|+|+.+.+||.+++++|
T Consensus 278 -----------------------~~~~~~~~v~I--IGaG~a-----Gl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~ 327 (604)
T PRK13984 278 -----------------------EPEKKNKKVAI--VGSGPA-----GLSAAYFLATMGYEVTVYESLSKPGGVMRYGIP 327 (604)
T ss_pred -----------------------CcccCCCeEEE--ECCCHH-----HHHHHHHHHHCCCeEEEEecCCCCCceEeecCC
Confidence 00111344455 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+..++++.....+.+++.|+++++++.+..+...+.....||+||+|||+..|+.+++||.+..+++++.+++...+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~ 407 (604)
T PRK13984 328 SYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDY 407 (604)
T ss_pred cccCCHHHHHHHHHHHHHCCcEEECCCEeCCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhh
Confidence 88888888888888899999999999988655444445668999999999875688899999888999988887655432
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
..... .....+++|+|||||++|+|+|..+.++
T Consensus 408 ~~~~~---~~~~~~k~VvVIGGG~~g~e~A~~l~r~ 440 (604)
T PRK13984 408 LRGEG---PKPKIPRSLVVIGGGNVAMDIARSMARL 440 (604)
T ss_pred hccCC---CcCCCCCcEEEECCchHHHHHHHHHHhc
Confidence 11100 0013479999999999999999998753
No 12
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=5e-26 Score=217.22 Aligned_cols=209 Identities=30% Similarity=0.478 Sum_probs=160.0
Q ss_pred Ccch--hHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWD--HQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.||| ||||.+|.|+..+ +||.|+.||||..|....+... +...
T Consensus 277 rvCp~~~~Ce~~C~~~~~~--~~v~I~~l~r~~~d~~~~~~~~--------------------------~~~~------- 321 (654)
T PRK12769 277 RVCPQDRLCEGACTLRDEY--GAVTIGNIERYISDQALAKGWR--------------------------PDLS------- 321 (654)
T ss_pred ccCCCCCChHHhccCCCCC--CCeecCHHHHHHHHHHHHhCCC--------------------------CCCc-------
Confidence 4898 5899999999999 8999999999999876542210 0000
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
. ....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||++.++
T Consensus 322 ------~-------------------~~~~~~~VaI--IGaGpA-----GLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g 369 (654)
T PRK12769 322 ------Q-------------------VTKSDKRVAI--IGAGPA-----GLACADVLARNGVAVTVYDRHPEIGGLLTFG 369 (654)
T ss_pred ------c-------------------cccCCCEEEE--ECCCHH-----HHHHHHHHHHCCCeEEEEecCCCCCceeeec
Confidence 0 0011345555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
+|.+.++++++....+.+++.|+++++++.+..+.+-......||.|++|||+..+..++++|.+.+|++++.+|+....
T Consensus 370 ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~ 449 (654)
T PRK12769 370 IPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANT 449 (654)
T ss_pred CCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHH
Confidence 99988999998888888999999999999886554444444679999999998745678999999999998877764321
Q ss_pred -HhhcCCCC-CCC-CCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 239 -KKQMGNEN-VSP-ISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 239 -~~~~~~~~-~~~-~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
........ ... ....+|+|+|||||++|+|+|..++|+
T Consensus 450 ~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ 490 (654)
T PRK12769 450 KQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRH 490 (654)
T ss_pred hhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence 11110000 000 014689999999999999999887764
No 13
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.93 E-value=5.1e-26 Score=209.09 Aligned_cols=208 Identities=32% Similarity=0.521 Sum_probs=158.8
Q ss_pred Ccch--hHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWD--HQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.||| ||||.+|.|+.++ +||.|+.||||+.|+....... +. .
T Consensus 91 rvC~~~~~Ce~~C~~~~~~--~~v~i~~l~r~~~~~~~~~~~~--------------------------~~--------~ 134 (467)
T TIGR01318 91 RVCPQDRLCEGACTLNDEF--GAVTIGNLERYITDTALAMGWR--------------------------PD--------L 134 (467)
T ss_pred ccCCCCCChHHhCcCCCCC--CCccHHHHHHHHHHHHHHhCCC--------------------------CC--------C
Confidence 5898 6999999999999 8999999999998865431100 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
+ .....++++.| ||+||+ |+++|..|++.|++|+++|+.+.+||+++++
T Consensus 135 ~------------------------~~~~~~~~V~I--IG~Gpa-----Gl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g 183 (467)
T TIGR01318 135 S------------------------HVVPTGKRVAV--IGAGPA-----GLACADILARAGVQVVVFDRHPEIGGLLTFG 183 (467)
T ss_pred C------------------------CcCCCCCeEEE--ECCCHH-----HHHHHHHHHHcCCeEEEEecCCCCCceeeec
Confidence 0 00111345555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
+|.+..++++.....+++.+.|+++++++.+..+...+.....||.||+|||+..+..+++||.+.+||+++.+|+....
T Consensus 184 ip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~ 263 (467)
T TIGR01318 184 IPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANT 263 (467)
T ss_pred CccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHH
Confidence 99988899888888889999999999999886544333444679999999999834567899999999999888765422
Q ss_pred HhhcCCC--CCCC-CCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 239 KKQMGNE--NVSP-ISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 239 ~~~~~~~--~~~~-~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
....... ...+ ....+|+++|||+|++|+|+|..+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~ 303 (467)
T TIGR01318 264 RQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIR 303 (467)
T ss_pred HHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHH
Confidence 1111100 0000 01468999999999999999988765
No 14
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=202.57 Aligned_cols=209 Identities=38% Similarity=0.580 Sum_probs=172.1
Q ss_pred CcchhH--HHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWDHQ--LEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.+||++ |+.+|.+...+ .|+.|+.|+++..|..... |+.. ..+.
T Consensus 73 Rvcp~~~~ceg~cv~~~~~--~~v~i~~le~~i~d~~~~~-------------------g~i~------~~~~------- 118 (457)
T COG0493 73 RVCPLGNLCEGACVLGIEE--LPVNIGALERAIGDKADRE-------------------GWIP------GELP------- 118 (457)
T ss_pred ccCCCCCceeeeeeeccCC--CchhhhhHHHHHhhHHHHh-------------------CCCC------CCCC-------
Confidence 389988 99999999877 9999999999988765431 1000 0011
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
+...++.+.+ ||+||+ |+.+|..|++.|+.||++|+.+..||.+.|+
T Consensus 119 --------------------------~~~tg~~Vav--iGaGPA-----Gl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 119 --------------------------GSRTGKKVAV--IGAGPA-----GLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred --------------------------CCCCCCEEEE--ECCCch-----HhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 1122355556 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
+|.+.+++++++..++.|++.|++|++++.+..+.+-++....||.|++++|...|+..++||.+.++++.+.+|+....
T Consensus 166 IP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~ 245 (457)
T COG0493 166 IPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLN 245 (457)
T ss_pred CchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999998877777777788999999998879999999999999999999998877
Q ss_pred HhhcCCCCCCC-CCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 239 KKQMGNENVSP-ISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 239 ~~~~~~~~~~~-~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
..........+ ....+|+|+|||||++++|++.+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~ 284 (457)
T COG0493 246 KEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRL 284 (457)
T ss_pred HHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhc
Confidence 55433221111 123569999999999999999888774
No 15
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.93 E-value=1e-25 Score=215.70 Aligned_cols=220 Identities=21% Similarity=0.221 Sum_probs=151.5
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
.||| +||.+|+|+ .+ +||+|+.||||..|...+ +|.|.+- -.++. + ++....
T Consensus 322 RVCp-~CE~aC~r~-~d--ePV~I~~ler~i~d~~~~-----~~~~~e~------------y~~~~-----~-~~~~~~- 373 (1028)
T PRK06567 322 RICN-DCSKACIYQ-KQ--DPVNIPLIESNILEETLK-----LPYGLEI------------YLLLT-----R-WNPLNI- 373 (1028)
T ss_pred ccCc-chHHHhcCC-CC--CCeehhHHHHHHhhhhhh-----hcccccc------------ccccc-----c-cccccc-
Confidence 4899 599999999 78 899999999999886543 1222210 00000 0 000000
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC-----------
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND----------- 149 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~----------- 149 (276)
+ ........++++.| ||+||+ |+++|.+|++.|++||++|+.+
T Consensus 374 ~-------------------~~~~~~~tgKKVaV--VGaGPA-----GLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~ 427 (1028)
T PRK06567 374 Y-------------------APLPKEPTNYNILV--TGLGPA-----GFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKP 427 (1028)
T ss_pred c-------------------CCCCCCCCCCeEEE--ECcCHH-----HHHHHHHHHhCCCeEEEEccccccccccccccc
Confidence 0 00011223566666 999999 9999999999999999999853
Q ss_pred -----------------ccceeeeecCCCCCCcHHHHHHHHHHHHh-cCcEEEeeeeeccccchhhh-hcccCEEEEcCC
Q psy12810 150 -----------------RVGGLLQYGIPTMKLSKEVVQRRVKLLAA-EGIEFKTNINVGKDIAAKEL-YEEFDALLLCTG 210 (276)
Q Consensus 150 -----------------~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~-~~~~D~vVlAtG 210 (276)
..||+.+|++| ++.+++.++.....+.. .+++++.|+.+..+.+-+.. ...||+|++|||
T Consensus 428 i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATG 506 (1028)
T PRK06567 428 IKFWHEYKNLLSERMPRGFGGVAEYGIT-VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIG 506 (1028)
T ss_pred cchhhhhccchhhhccccCCcccccCcc-ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCC
Confidence 26789999998 66777665553333322 35777778887766655553 467999999999
Q ss_pred CCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 211 ATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 211 ~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
++.|+.+++||.+.++|+++.+|+...+...............+++|||||||++|+|+|.++++
T Consensus 507 A~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 507 AGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred CCCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 94499999999999999999999887643211100000112357899999999999999997764
No 16
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.93 E-value=1.8e-25 Score=212.56 Aligned_cols=209 Identities=28% Similarity=0.469 Sum_probs=162.1
Q ss_pred Ccch--hHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWD--HQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.||| ||||.+|.|+..+ +||.|+.||||..|+..+++.. . . .
T Consensus 260 rvCp~~~~Ce~~C~~~~~~--~~v~i~~l~r~~~d~~~~~~~~-------------------~------~---------~ 303 (639)
T PRK12809 260 RVCPQDRLCEGACTLKDHS--GAVSIGNLERYITDTALAMGWR-------------------P------D---------V 303 (639)
T ss_pred ccCCCCCChHHhccCCCcC--CCcChhHHHHHHHHHHHHhCCC-------------------C------C---------C
Confidence 4898 6999999999999 8999999999998876542211 0 0 0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
+. ....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||+++|+
T Consensus 304 ~~------------------------~~~~~kkVaI--IG~Gpa-----Gl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g 352 (639)
T PRK12809 304 SK------------------------VVPRSEKVAV--IGAGPA-----GLGCADILARAGVQVDVFDRHPEIGGMLTFG 352 (639)
T ss_pred Cc------------------------ccCCCCEEEE--ECcCHH-----HHHHHHHHHHcCCcEEEEeCCCCCCCeeecc
Confidence 00 0112455666 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
+|.+.++++++....+.+.+.|+++++++.+..+.+-.+....||.|++|||+..+..+++||.+.+|++++.+|+....
T Consensus 353 ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~ 432 (639)
T PRK12809 353 IPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHT 432 (639)
T ss_pred CCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHH
Confidence 99999999998888889999999999999886554444455679999999999756678899998899999888876432
Q ss_pred HhhcCCCC--CCC-CCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 239 KKQMGNEN--VSP-ISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 239 ~~~~~~~~--~~~-~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
........ ... ....+|+|+|||+|++|+|+|..++++
T Consensus 433 ~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~ 473 (639)
T PRK12809 433 RQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRL 473 (639)
T ss_pred HhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence 11111000 000 124689999999999999999877653
No 17
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.93 E-value=2.3e-25 Score=204.67 Aligned_cols=202 Identities=34% Similarity=0.516 Sum_probs=158.2
Q ss_pred CcchhH--HHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 1 MIWDHQ--LEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
.||||+ |+..|.++..+ +|+.|+.|++|..+........
T Consensus 91 ~vc~~~~~C~~~C~~~~~~--~~v~i~~l~~~~~~~~~~~~~~------------------------------------- 131 (457)
T PRK11749 91 RVCPQERLCEGACVRGKKG--EPVAIGRLERYITDWAMETGWV------------------------------------- 131 (457)
T ss_pred CcCCCccCHHHHhcCCCCC--CCcchHHHHHHHHHHHHhcCCC-------------------------------------
Confidence 489999 99999999988 8999999999987654321100
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec
Q psy12810 79 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~ 158 (276)
+.. .....++++.| ||+||+ |+++|..|++.|++|+|||+.+.+||.+.++
T Consensus 132 ~~~----------------------~~~~~~~~VvI--IGgGpa-----Gl~aA~~l~~~g~~V~lie~~~~~gG~l~~g 182 (457)
T PRK11749 132 LFK----------------------RAPKTGKKVAV--IGAGPA-----GLTAAHRLARKGYDVTIFEARDKAGGLLRYG 182 (457)
T ss_pred CCC----------------------CCccCCCcEEE--ECCCHH-----HHHHHHHHHhCCCeEEEEccCCCCCcEeecc
Confidence 000 00111345555 999999 9999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 159 IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
+|.+..+.++.....+.+.+.|+++++++.+..+.+.+...+.||+||+|||++.|+.+++||.+.++++++.+++....
T Consensus 183 ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~ 262 (457)
T PRK11749 183 IPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVN 262 (457)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHh
Confidence 88877788888888888999999999999875443333344789999999998547778899988889999888877754
Q ss_pred HhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 239 KKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 239 ~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
..... .....+++|+|||||++|+|+|..+.+
T Consensus 263 ~~~~~-----~~~~~g~~VvViGgG~~g~e~A~~l~~ 294 (457)
T PRK11749 263 QAVAD-----YDLPVGKRVVVIGGGNTAMDAARTAKR 294 (457)
T ss_pred hcccc-----ccCCCCCeEEEECCCHHHHHHHHHHHH
Confidence 32100 012468999999999999999998875
No 18
>KOG0399|consensus
Probab=99.92 E-value=2e-25 Score=210.23 Aligned_cols=208 Identities=47% Similarity=0.702 Sum_probs=169.1
Q ss_pred cchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCC
Q psy12810 2 IWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTM 81 (276)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~ 81 (276)
|||.|||-+|..-.|+ .||.|--+|+.--|..+.. | |-.-+|+
T Consensus 1738 vcpapcegactlgiie--~pv~iksie~aiid~af~e-------------------g---------------wm~p~pp- 1780 (2142)
T KOG0399|consen 1738 VCPAPCEGACTLGIIE--PPVGIKSIECAIIDKAFEE-------------------G---------------WMKPCPP- 1780 (2142)
T ss_pred cCCCCcCcceeeeccc--CCccccchhhHHHHHHHHh-------------------c---------------CCccCCc-
Confidence 8999999999999999 9999988877655554331 1 1000111
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCC
Q psy12810 82 KLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPT 161 (276)
Q Consensus 82 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~ 161 (276)
.+++ ++.+.+ ||+||+ |+.+|.+|.+.|+.|||+|+.+++||++.|++|.
T Consensus 1781 -------------------~~rt----g~~vai--igsgpa-----glaaadqlnk~gh~v~vyer~dr~ggll~ygipn 1830 (2142)
T KOG0399|consen 1781 -------------------AFRT----GKRVAI--IGSGPA-----GLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPN 1830 (2142)
T ss_pred -------------------cccc----CcEEEE--EccCch-----hhhHHHHHhhcCcEEEEEEecCCcCceeeecCCc
Confidence 1222 456666 999999 9999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhh
Q psy12810 162 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQ 241 (276)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~ 241 (276)
+.+++.++++..+.+.+.||+|.+|+.+.+++.-++..-+.|.||+|+|+..|+.+++||.+.+||.++.+|++......
T Consensus 1831 mkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~l 1910 (2142)
T KOG0399|consen 1831 MKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSL 1910 (2142)
T ss_pred cchhHHHHHHHHHHHHhhCceEEeeccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhh
Confidence 99999999999999999999999999998887777777789999999999889999999999999999999998764332
Q ss_pred cCCCCCCCC-CCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 242 MGNENVSPI-SAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 242 ~~~~~~~~~-~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
....-.... ..++|+|+|||||.+|.|+..+..|+
T Consensus 1911 ld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrh 1946 (2142)
T KOG0399|consen 1911 LDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRH 1946 (2142)
T ss_pred hccccccceeccCCCeEEEECCCCccccccccchhh
Confidence 221111111 26799999999999999987766553
No 19
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.90 E-value=1.7e-23 Score=196.92 Aligned_cols=200 Identities=30% Similarity=0.520 Sum_probs=157.4
Q ss_pred CcchhHHHhhhhhhccccccceeeccccchhcccccccccccccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC
Q psy12810 1 MIWDHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT 80 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~ 80 (276)
.|||||||.+|+|...+ .||.|+.|+|++.|....+..+. .
T Consensus 90 rvc~~~ce~~C~r~~~~--~~v~i~~l~r~~~~~~~~~~~~~-------------------------~------------ 130 (564)
T PRK12771 90 RVCYHPCESGCNRGQVD--DAVGINAVERFLGDYAIANGWKF-------------------------P------------ 130 (564)
T ss_pred CcCCchhHHhccCCCCC--CCcCHHHHHHHHHHHHHHcCCCC-------------------------C------------
Confidence 58999999999999999 99999999999987654321110 0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEeccccCccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCC
Q psy12810 81 MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIP 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~ 160 (276)
..+...++++.| +|+||+ |+.+|..|++.|++|+++|+.+.+||++++++|
T Consensus 131 ----------------------~~~~~~g~~V~V--IGaGpa-----GL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip 181 (564)
T PRK12771 131 ----------------------APAPDTGKRVAV--IGGGPA-----GLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIP 181 (564)
T ss_pred ----------------------CCCCCCCCEEEE--ECCCHH-----HHHHHHHHHHCCCeEEEEecCCCCCCeeeecCC
Confidence 001122455555 999999 999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHh
Q psy12810 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKK 240 (276)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~ 240 (276)
.+.+++++.....+.+.+.|+++++++.+..+.........||.||+|+|+..+..+.+++.+..+++...+++......
T Consensus 182 ~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~ 261 (564)
T PRK12771 182 AYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEG 261 (564)
T ss_pred CccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhcc
Confidence 99999998888888899999999999877433322233446999999999874566788888888888887777643221
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
. ....+++++|||+|++|+|.+..+.++
T Consensus 262 ~--------~~~~gk~v~ViGgg~~a~d~a~~a~~l 289 (564)
T PRK12771 262 E--------PPFLGKRVVVIGGGNTAMDAARTARRL 289 (564)
T ss_pred C--------CcCCCCCEEEECChHHHHHHHHHHHHc
Confidence 1 125689999999999999999877653
No 20
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.85 E-value=8.9e-21 Score=173.48 Aligned_cols=156 Identities=24% Similarity=0.389 Sum_probs=124.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhh--CCcEEEEEcCCCccceeeeecC-CCCCCcHHHHHHHHHHHHhcCcEEEeeeeec
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNI--VGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVG 190 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~--~G~~Vtvie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 190 (276)
|.|||+||+ |+.+|..|++ .|++|+|||+.+.+||++++++ |.++..+.+...+.+.+...+++|+.|+.+.
T Consensus 29 VaIVGaGPA-----Gl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 29 VCVVGSGPA-----GFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred EEEECccHH-----HHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 344999999 9999999986 7999999999999999999987 6666667777777777888899999999887
Q ss_pred cccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHH
Q psy12810 191 KDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCI 270 (276)
Q Consensus 191 ~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A 270 (276)
.+.+-++....||.||+|+|+..++.+++||.+.+||+.+.+|+..++....... .......+++|+|||+|++|+|+|
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~-~~~~~~~gk~VvVIGgGnvAlD~A 182 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVH-LPPDLKSSDTAVVLGQGNVALDCA 182 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhh-hhhcccCCCEEEEECCCHHHHHHH
Confidence 7666666666899999999997347889999999999999988765432100000 000024689999999999999999
Q ss_pred HHhhc
Q psy12810 271 ATSLR 275 (276)
Q Consensus 271 ~~~~r 275 (276)
..+.+
T Consensus 183 r~L~~ 187 (491)
T PLN02852 183 RILLR 187 (491)
T ss_pred HHHHh
Confidence 98865
No 21
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.72 E-value=1.3e-17 Score=152.85 Aligned_cols=146 Identities=25% Similarity=0.362 Sum_probs=106.7
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecC------------------------------
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGI------------------------------ 159 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~------------------------------ 159 (276)
+++.| ||+||+ |+.+|..|.+.|++|+|||+++.+||.|.+.-
T Consensus 11 ~~VaI--IGAG~a-----GL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 11 QHVAV--IGAGAA-----GLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCEEE--ECCcHH-----HHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 44444 999999 99999999999999999999999999996520
Q ss_pred --------C-------------CCCCcHHHHHHHHHHHHhcCcE--EEeeeeecc-c-------cc---hh--hhhcccC
Q psy12810 160 --------P-------------TMKLSKEVVQRRVKLLAAEGIE--FKTNINVGK-D-------IA---AK--ELYEEFD 203 (276)
Q Consensus 160 --------~-------------~~~~~~~~~~~~~~~l~~~gv~--i~~~~~v~~-~-------~~---~~--~~~~~~D 203 (276)
| .++...++.+++.++.+..|++ +++++.|+. + +. +. ..+..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 0 0112256777888888888987 888887751 0 11 11 1134699
Q ss_pred EEEEcCCCC-CCCCCCCCCcC-CCC-eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 204 ALLLCTGAT-WPRDLPIPGRQ-LSG-IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 204 ~vVlAtG~~-~p~~~~i~g~~-~~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+||+|+|.. .|+.|++||.+ .+| ++++.++-.. ..+.+|+|+|||+|+||+|+|.++.+
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~-------------~~~~gk~VvVVG~G~Sg~diA~~L~~ 225 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVP-------------DPFKNEVVVVIGNFASGADISRDIAK 225 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCc-------------cccCCCEEEEECCCcCHHHHHHHHHH
Confidence 999999953 39999999975 455 3443222111 13689999999999999999998764
No 22
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.72 E-value=4.7e-18 Score=157.75 Aligned_cols=145 Identities=30% Similarity=0.453 Sum_probs=102.8
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecC-------------------------------
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGI------------------------------- 159 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~------------------------------- 159 (276)
++.| ||+|++ |+.+|..|.+.|.++++||+.+.+||.|++.-
T Consensus 3 rVaV--IGaG~s-----GL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~ 75 (531)
T PF00743_consen 3 RVAV--IGAGPS-----GLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPE 75 (531)
T ss_dssp EEEE--E--SHH-----HHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCC
T ss_pred EEEE--ECccHH-----HHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCC
Confidence 4444 999999 99999999999999999999999999997421
Q ss_pred --CCCCCcHHHHHHHHHHHHhcCc--EEEeeeeecc-----c--------c----chhhhhcccCEEEEcCCCC-CCCCC
Q psy12810 160 --PTMKLSKEVVQRRVKLLAAEGI--EFKTNINVGK-----D--------I----AAKELYEEFDALLLCTGAT-WPRDL 217 (276)
Q Consensus 160 --~~~~~~~~~~~~~~~~l~~~gv--~i~~~~~v~~-----~--------~----~~~~~~~~~D~vVlAtG~~-~p~~~ 217 (276)
|.++...++.+++..+.+..++ .+++|++|.. + + +++..+..||.||+|+|.. .|+.|
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 1122336788888888888877 5788887751 0 1 1112244699999999986 58877
Q ss_pred C--CCCcC-CCC-eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 218 P--IPGRQ-LSG-IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 218 ~--i~g~~-~~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
. +||.+ ++| ++|+.+|-+. ..+++|||+|||+|+||+|+|.++.+
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-------------~~f~gKrVlVVG~g~Sg~DIa~el~~ 204 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-------------EPFKGKRVLVVGGGNSGADIAVELSR 204 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-------------GGGTTSEEEEESSSHHHHHHHHHHTT
T ss_pred hhhhhhhhcCCeeEEccccCcCh-------------hhcCCCEEEEEeCCHhHHHHHHHHHH
Confidence 4 88986 455 6776665332 13789999999999999999998865
No 23
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.72 E-value=9.1e-17 Score=143.07 Aligned_cols=159 Identities=30% Similarity=0.505 Sum_probs=113.9
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++++.| +|+|++ |+++|..|++.|++|++||+.+.++|.+.++.+....+.+......+.+.+.++++++++.
T Consensus 18 ~~~VvI--IG~G~a-----Gl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 90 (352)
T PRK12770 18 GKKVAI--IGAGPA-----GLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTK 90 (352)
T ss_pred CCEEEE--ECcCHH-----HHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcE
Confidence 455555 999999 9999999999999999999999999888776655444555555566777778999999987
Q ss_pred eccc---------------cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCC-CCC
Q psy12810 189 VGKD---------------IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSP-ISA 252 (276)
Q Consensus 189 v~~~---------------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~-~~~ 252 (276)
+... ...+...+.||+||+|||++.|+.+++||.+.++++.+.+++..+............ ...
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred EeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence 7321 011223468999999999842778899998888888876554432211110000000 013
Q ss_pred CCCeEEEEcCChHHHHHHHHhh
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
.+++++|||+|++|+|+|..+.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~ 192 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAV 192 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 24
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.69 E-value=1.2e-16 Score=144.99 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=125.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee-eecC-CC----------------------------CCCCHHHH----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL-QYGI-PT----------------------------MKLSKEVV---- 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~-~~~~-~~----------------------------~~~~~~~~---- 88 (276)
+|||+.||++ |++.|.+|+++|+++.+||+| ++|| |. +++ ..+.
T Consensus 13 GpaG~~aA~r-aa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~-~~~~~~k~ 90 (454)
T COG1249 13 GPAGYVAAIR-AAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF-EKLLARKD 90 (454)
T ss_pred CHHHHHHHHH-HHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH-HHHHHHHH
Confidence 7999999999 999999999999987899999 3443 21 111 1111
Q ss_pred -------HHHHHHHHhCCCeEEecccc---------Cc----cc----hhhhccCCCCCC--------------------
Q psy12810 89 -------QRRVKLLAAEGIEFKTNINV---------GK----DI----AAKVTNHTPQSD-------------------- 124 (276)
Q Consensus 89 -------~~~~~~l~~~gv~~~~~~~v---------~~----~v----~v~iiG~gp~~~-------------------- 124 (276)
.....++++.||++..++.. .. .+ .+..+|+.|..|
T Consensus 91 ~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~ 170 (454)
T COG1249 91 KVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLL 170 (454)
T ss_pred HHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccc
Confidence 11125556679998877421 11 11 122357766543
Q ss_pred -----------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc
Q psy12810 125 -----------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 193 (276)
Q Consensus 125 -----------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~ 193 (276)
|++|+|+|..++++|.+|||+|+.+++ ++ ..++++.+.+.+.+++.|+++++++.+....
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i---Lp------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI---LP------GEDPEISKELTKQLEKGGVKILLNTKVTAVE 241 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC---CC------cCCHHHHHHHHHHHHhCCeEEEccceEEEEE
Confidence 789999999999999999999999985 22 4788999999999999889999999876211
Q ss_pred c-----------hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeee
Q psy12810 194 A-----------AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYF 229 (276)
Q Consensus 194 ~-----------~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~ 229 (276)
. +....+.+|.|++|+|++ ||...+ |++..|+..
T Consensus 242 ~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~-Pn~~~L-gLe~~Gv~~ 286 (454)
T COG1249 242 KKDDGVLVTLEDGEGGTIEADAVLVAIGRK-PNTDGL-GLENAGVEL 286 (454)
T ss_pred ecCCeEEEEEecCCCCEEEeeEEEEccCCc-cCCCCC-ChhhcCceE
Confidence 1 111157799999999998 999877 666555543
No 25
>KOG1800|consensus
Probab=99.69 E-value=1.6e-16 Score=136.47 Aligned_cols=152 Identities=27% Similarity=0.427 Sum_probs=125.7
Q ss_pred hccCCCCCCCCCCCCcchhhhh--CCcEEEEEcCCCccceeeeecC-CCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNI--VGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 192 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~--~G~~Vtvie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~ 192 (276)
|+|+||+ |+.+|+.|.+ .+.+|+++|+.+.++|+.+|++ |.++..+.+...+.+.+++....|..|.++..+
T Consensus 25 IVGsGPA-----GfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d 99 (468)
T KOG1800|consen 25 IVGSGPA-----GFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD 99 (468)
T ss_pred EECCCch-----HHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence 4999999 9999998766 4689999999999999999995 556677777777878888889999999999888
Q ss_pred cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHH
Q psy12810 193 IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIAT 272 (276)
Q Consensus 193 ~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~ 272 (276)
+.-++.+-.||.||+|.|+..++.++|||.+..+|+.+..|..-++-...... ......+.+|+|||-|++++|+|+.
T Consensus 100 vsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~--le~dls~~~vvIvG~GNVAlDvARi 177 (468)
T KOG1800|consen 100 VSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQN--LEPDLSGRKVVIVGNGNVALDVARI 177 (468)
T ss_pred ccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccc--cCcccccceEEEEccCchhhhhhhh
Confidence 88888888999999999998789999999999999999887665542211110 0012458999999999999999987
Q ss_pred hh
Q psy12810 273 SL 274 (276)
Q Consensus 273 ~~ 274 (276)
+.
T Consensus 178 Ll 179 (468)
T KOG1800|consen 178 LL 179 (468)
T ss_pred hh
Confidence 75
No 26
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.67 E-value=2.6e-17 Score=135.06 Aligned_cols=142 Identities=25% Similarity=0.372 Sum_probs=89.6
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcE-EEEEcCCCccceeeeec-------CCC--------------------------
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHS-VTVFERNDRVGGLLQYG-------IPT-------------------------- 161 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~-Vtvie~~~~~gg~~~~~-------~~~-------------------------- 161 (276)
|||+||+ |+.+|..|.+.|.+ |+|||+++.+||.|... .|.
T Consensus 2 IIGaG~a-----Gl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (203)
T PF13738_consen 2 IIGAGPA-----GLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPH 76 (203)
T ss_dssp EE--SHH-----HHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSB
T ss_pred EECcCHH-----HHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCc
Confidence 5899999 99999999999999 99999999999988520 000
Q ss_pred -CCCcHHHHHHHHHHHHhcCcEEEeeeeecc--------ccchhh-hhcccCEEEEcCCCC-CCCCCCCCCcCCCCeeeh
Q psy12810 162 -MKLSKEVVQRRVKLLAAEGIEFKTNINVGK--------DIAAKE-LYEEFDALLLCTGAT-WPRDLPIPGRQLSGIYFA 230 (276)
Q Consensus 162 -~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~--------~~~~~~-~~~~~D~vVlAtG~~-~p~~~~i~g~~~~gv~~~ 230 (276)
++..+++.+++....++.++++++++.|.. .++.+. .++.+|.||+|||.. .|+.|+++|.....++++
T Consensus 77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~ 156 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHS 156 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEG
T ss_pred ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEeh
Confidence 011234556677777888999999988752 112222 367899999999973 488899988222355665
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 231 MSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.++.+.. .+.+|+|+|||+|.||+|+|..+.+
T Consensus 157 ~~~~~~~-------------~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 157 ADWRDPE-------------DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GG-STTG-------------GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hhcCChh-------------hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 5443221 2678999999999999999998865
No 27
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.66 E-value=3e-16 Score=143.75 Aligned_cols=144 Identities=21% Similarity=0.315 Sum_probs=100.2
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc-ccee-eeec-CCCCCC--------c-HHH-----------
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR-VGGL-LQYG-IPTMKL--------S-KEV----------- 168 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~-~gg~-~~~~-~~~~~~--------~-~~~----------- 168 (276)
+.+.|||+||+ |+++|..++++|++|+|||+.+. +||. ++.+ +|...+ + .++
T Consensus 4 ~dvvVIG~Gpa-----G~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (438)
T PRK07251 4 YDLIVIGFGKA-----GKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRL 78 (438)
T ss_pred cCEEEECCCHH-----HHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHH
Confidence 34455999999 99999999999999999999874 5764 3332 333221 0 111
Q ss_pred HHHHHHHHHhcCcEEEeeeeec-------cccchhhhhcccCEEEEcCCCCCCCCCCCCCcC-CCCeeehHHHHHHHHHh
Q psy12810 169 VQRRVKLLAAEGIEFKTNINVG-------KDIAAKELYEEFDALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKK 240 (276)
Q Consensus 169 ~~~~~~~l~~~gv~i~~~~~v~-------~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~-~~gv~~~~~~l~~~~~~ 240 (276)
.....+.+.+.||+++.++... ....+...++.||+||+|||++ |+.|++||.+ .++++++.+++..
T Consensus 79 ~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~-~~~p~i~G~~~~~~v~~~~~~~~~---- 153 (438)
T PRK07251 79 RGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAV-SNVLPIPGLADSKHVYDSTGIQSL---- 153 (438)
T ss_pred HHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCC-CCCCCCCCcCCCCcEEchHHHhcc----
Confidence 1112345677899998887421 1111122468999999999998 9999999974 4667776554321
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||+|++|+|+|..+.+
T Consensus 154 ----------~~~~~~vvIIGgG~~g~e~A~~l~~ 178 (438)
T PRK07251 154 ----------ETLPERLGIIGGGNIGLEFAGLYNK 178 (438)
T ss_pred ----------hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 1356899999999999999998765
No 28
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.66 E-value=3.7e-16 Score=141.47 Aligned_cols=155 Identities=20% Similarity=0.341 Sum_probs=110.6
Q ss_pred hhhccCCCCCCCCCCCCcchhh-hhCCcEEEEEcCCCccceeeeecCCCCCCc-HHHHHHHHHHHHhcCcEEEeeeeecc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIV-NIVGHSVTVFERNDRVGGLLQYGIPTMKLS-KEVVQRRVKLLAAEGIEFKTNINVGK 191 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l-~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~ 191 (276)
|.|||+||+ |+.+|..| ++.|++|+|||+.+.+||++++++++.... +.+...+...+...+++|..|..+..
T Consensus 42 VAIVGaGPA-----GlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 42 VGIIGAGPS-----ALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred EEEECCcHH-----HHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 334999999 99999975 567999999999999999999998754322 45555555556678899998888877
Q ss_pred ccchhhhhcccCEEEEcCCCCCCCCCCCC----------CcC----CCCeeehHHHHHHHHHhhc-----CCCCCCCCCC
Q psy12810 192 DIAAKELYEEFDALLLCTGATWPRDLPIP----------GRQ----LSGIYFAMSFLESWQKKQM-----GNENVSPISA 252 (276)
Q Consensus 192 ~~~~~~~~~~~D~vVlAtG~~~p~~~~i~----------g~~----~~gv~~~~~~l~~~~~~~~-----~~~~~~~~~~ 252 (276)
+.+-++....||.||+|+|+. +..++++ |.+ ..|++.+.+|..-++.... ....++....
T Consensus 117 Dvt~eeL~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~ 195 (506)
T PTZ00188 117 DLKMEELRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFE 195 (506)
T ss_pred ccCHHHHHhcCCEEEEEcCCC-CCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccC
Confidence 776667767899999999987 4433311 333 4688888776443332110 0000111112
Q ss_pred CCCeEEEEcCChHHHHHHHHhh
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
..++++|||.||+++|+|+.++
T Consensus 196 ~~~~vvVIG~GNVAlDvARiL~ 217 (506)
T PTZ00188 196 NFTTSIIIGNGNVSLDIARILI 217 (506)
T ss_pred CCCcEEEECCCchHHHHHHHHc
Confidence 5679999999999999999865
No 29
>KOG1335|consensus
Probab=99.64 E-value=1.1e-15 Score=131.57 Aligned_cols=91 Identities=26% Similarity=0.325 Sum_probs=74.9
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-------------
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------------- 191 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~------------- 191 (276)
|++|++++....++|.+||++|-.+.+++ .++.++.....+.|.+.|++|+++++|..
T Consensus 220 G~IGLE~gsV~~rLGseVT~VEf~~~i~~---------~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~v 290 (506)
T KOG1335|consen 220 GYIGLEMGSVWSRLGSEVTVVEFLDQIGG---------VMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEV 290 (506)
T ss_pred ceeeeehhhHHHhcCCeEEEEEehhhhcc---------ccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEE
Confidence 78899999999999999999999998863 36788888999999999999999999861
Q ss_pred --ccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCC
Q psy12810 192 --DIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSG 226 (276)
Q Consensus 192 --~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~g 226 (276)
..+++..++++|.+++|+|++ |..-.+ |++.-|
T Consensus 291 e~ak~~k~~tle~DvlLVsiGRr-P~t~GL-gle~iG 325 (506)
T KOG1335|consen 291 ENAKTGKKETLECDVLLVSIGRR-PFTEGL-GLEKIG 325 (506)
T ss_pred EecCCCceeEEEeeEEEEEccCc-ccccCC-Chhhcc
Confidence 023345578999999999999 887666 555444
No 30
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.64 E-value=9.9e-16 Score=141.39 Aligned_cols=171 Identities=22% Similarity=0.259 Sum_probs=98.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecCCCCCCCHHHHHH--HHHHHHhCCCeEEeccccCccchhhhccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGIPTMKLSKEVVQR--RVKLLAAEGIEFKTNINVGKDIAAKVTNH 119 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~~~~~~~~~~~~~--~~~~l~~~gv~~~~~~~v~~~v~v~iiG~ 119 (276)
+|||++||.. |+++|++|+|+|+++.+||+|. .|+.+.+........ ..+.+.+.|+++.. ..+.+
T Consensus 13 GpaG~~aA~~-aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~-----~~~~~----- 81 (471)
T PRK06467 13 GPAGYSAAFR-AADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGE-----PKIDI----- 81 (471)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCC-----CCcCH-----
Confidence 6999999999 8999999999999878999984 566222211111111 11122223332110 00000
Q ss_pred CCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-----c-
Q psy12810 120 TPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD-----I- 193 (276)
Q Consensus 120 gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~-----~- 193 (276)
...+.+ .+ ..-..+.......+++.||+++.++....+ +
T Consensus 82 ------------~~~~~~----------~~-------------~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~ 126 (471)
T PRK06467 82 ------------DKMRAR----------KE-------------KVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVT 126 (471)
T ss_pred ------------HHHHHH----------HH-------------HHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEe
Confidence 000000 00 000111222334567789999988743211 1
Q ss_pred --chhhhhcccCEEEEcCCCCCCCCC-CCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHH
Q psy12810 194 --AAKELYEEFDALLLCTGATWPRDL-PIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCI 270 (276)
Q Consensus 194 --~~~~~~~~~D~vVlAtG~~~p~~~-~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A 270 (276)
+++..++.||+||+|||++ |..+ .+++ +.++++++.+.++. ...+++++|||||++|+|+|
T Consensus 127 ~~~g~~~~~~~d~lViATGs~-p~~~p~~~~-~~~~v~~~~~~~~~--------------~~~~~~vvIiGgG~iG~E~A 190 (471)
T PRK06467 127 GEDGKTTVIEFDNAIIAAGSR-PIQLPFIPH-DDPRIWDSTDALEL--------------KEVPKRLLVMGGGIIGLEMG 190 (471)
T ss_pred cCCCceEEEEcCEEEEeCCCC-CCCCCCCCC-CCCcEEChHHhhcc--------------ccCCCeEEEECCCHHHHHHH
Confidence 1222468999999999998 8644 4443 44556654443321 13468999999999999999
Q ss_pred HHhhc
Q psy12810 271 ATSLR 275 (276)
Q Consensus 271 ~~~~r 275 (276)
..+.+
T Consensus 191 ~~l~~ 195 (471)
T PRK06467 191 TVYHR 195 (471)
T ss_pred HHHHH
Confidence 88765
No 31
>KOG1399|consensus
Probab=99.62 E-value=8.5e-16 Score=138.94 Aligned_cols=146 Identities=31% Similarity=0.439 Sum_probs=104.5
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec--------C----------------CC----
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG--------I----------------PT---- 161 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~--------~----------------~~---- 161 (276)
+++.| ||+||+ ||.+|..|.+.|++|+++|+.+.+||+|.+. - +.
T Consensus 7 ~~vaI--IGAG~s-----GL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 7 KDVAV--IGAGPA-----GLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred CceEE--ECcchH-----HHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 34444 999999 9999999999999999999999999999764 0 00
Q ss_pred ------CCCcHHHHHHHHHHHHhcCc--EEEeeeeec---c-c-----c---chh--hhhcccCEEEEcCCCCC-CCCCC
Q psy12810 162 ------MKLSKEVVQRRVKLLAAEGI--EFKTNINVG---K-D-----I---AAK--ELYEEFDALLLCTGATW-PRDLP 218 (276)
Q Consensus 162 ------~~~~~~~~~~~~~~l~~~gv--~i~~~~~v~---~-~-----~---~~~--~~~~~~D~vVlAtG~~~-p~~~~ 218 (276)
++...++.+++..+++..++ .|.+++.+. . . + +.. ..+.-||.|++|+|... |+.|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 12234678888888888876 566666332 0 0 0 111 23556999999999874 88888
Q ss_pred CCCc---CCCC-eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 219 IPGR---QLSG-IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 219 i~g~---~~~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
++|. ..+| ++|+.+|- .. ..+.+|+|+|||.|+||+|++.++++
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk------~~-------e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYK------SP-------EKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CCCCchhhcCCcceehhhcc------Cc-------ccccCceEEEECCCccHHHHHHHHHH
Confidence 8874 2444 44433322 11 24889999999999999999998653
No 32
>PRK06370 mercuric reductase; Validated
Probab=99.62 E-value=2.1e-15 Score=139.06 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=99.2
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec-CCC--------------------------CCC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG-IPT--------------------------MKL 164 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~-~~~--------------------------~~~ 164 (276)
+.+.|||+||+ |+++|..+++.|++|+|||+....|++.+++ +|. ...
T Consensus 6 ~DvvVIG~Gpa-----G~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 6 YDAIVIGAGQA-----GPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred ccEEEECCCHH-----HHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 34455999999 9999999999999999999875333333332 121 011
Q ss_pred c-HHHH-----------HHHHHHHHhc-CcEEEeeeeeccc---cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCee
Q psy12810 165 S-KEVV-----------QRRVKLLAAE-GIEFKTNINVGKD---IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIY 228 (276)
Q Consensus 165 ~-~~~~-----------~~~~~~l~~~-gv~i~~~~~v~~~---~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~ 228 (276)
+ ..+. .....++++. ||+++.++.+..+ +..+..++.||+||+|||++ |+.|++||.+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~-p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGAR-AAIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCC-CCCCCCCCCCcCceE
Confidence 1 1111 1223445666 9999999864321 11122357899999999998 999999998877777
Q ss_pred ehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 229 FAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+..++++. ...+++++|||+|++|+|+|..+.+
T Consensus 160 ~~~~~~~~--------------~~~~~~vvVIGgG~~g~E~A~~l~~ 192 (463)
T PRK06370 160 TNETIFSL--------------DELPEHLVIIGGGYIGLEFAQMFRR 192 (463)
T ss_pred cchHhhCc--------------cccCCEEEEECCCHHHHHHHHHHHH
Confidence 65443321 1357899999999999999988764
No 33
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.61 E-value=9.9e-16 Score=139.83 Aligned_cols=145 Identities=20% Similarity=0.295 Sum_probs=103.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcE-EEEEcCCCccceeeeec---------------CCCCCC--------cHHH
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHS-VTVFERNDRVGGLLQYG---------------IPTMKL--------SKEV 168 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~-Vtvie~~~~~gg~~~~~---------------~~~~~~--------~~~~ 168 (276)
.+.|||+|++ |+.+|..|.+.|.. ++|+|+++.+||.|++. +|.++. -..+
T Consensus 10 ~v~IIGaG~s-----Glaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 10 DVAIIGAGQS-----GLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred cEEEECCCHH-----HHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 3445999999 99999999999999 99999999999998642 122222 1225
Q ss_pred HHHHHHHHHhcCcE--EEeeeeecc---c-------c--c-hhhhhcccCEEEEcCCCC-CCCCCCCCCcCC-CC-eeeh
Q psy12810 169 VQRRVKLLAAEGIE--FKTNINVGK---D-------I--A-AKELYEEFDALLLCTGAT-WPRDLPIPGRQL-SG-IYFA 230 (276)
Q Consensus 169 ~~~~~~~l~~~gv~--i~~~~~v~~---~-------~--~-~~~~~~~~D~vVlAtG~~-~p~~~~i~g~~~-~g-v~~~ 230 (276)
..++..++++++++ +..++.|.. + + + +...++.+|.||+|||.. .|+.|.++|.+. .| ++|+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS 164 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEch
Confidence 66677777777654 333343321 0 0 1 111116699999999986 699999999874 33 5665
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 231 MSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.++.+.. .+.+|+|+|||+|+||+|+|.++.+
T Consensus 165 ~~~~~~~-------------~~~GKrV~VIG~GaSA~di~~~l~~ 196 (443)
T COG2072 165 ADWPNPE-------------DLRGKRVLVIGAGASAVDIAPELAE 196 (443)
T ss_pred hcCCCcc-------------ccCCCeEEEECCCccHHHHHHHHHh
Confidence 5544431 3899999999999999999998865
No 34
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.61 E-value=2.1e-15 Score=130.86 Aligned_cols=139 Identities=22% Similarity=0.297 Sum_probs=99.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee-----cCCCC---CCcHHHHHHHHHHHHhcCcEEEee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY-----GIPTM---KLSKEVVQRRVKLLAAEGIEFKTN 186 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~-----~~~~~---~~~~~~~~~~~~~l~~~gv~i~~~ 186 (276)
.|||+|++ |+++|..|++.|++|+|||+.+ .||.+.. ..|.+ ..+.++...+.+.+++.|+++++
T Consensus 4 vIIG~G~a-----Gl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~- 76 (300)
T TIGR01292 4 IIIGAGPA-----GLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY- 76 (300)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-
Confidence 35999999 9999999999999999999887 5554431 12332 23367778888888899999988
Q ss_pred eeec-cccc--------hhhhhcccCEEEEcCCCCCCCCCCCCCcCC---CCeeehHHHHHHHHHhhcCCCCCCCCCCCC
Q psy12810 187 INVG-KDIA--------AKELYEEFDALLLCTGATWPRDLPIPGRQL---SGIYFAMSFLESWQKKQMGNENVSPISAKD 254 (276)
Q Consensus 187 ~~v~-~~~~--------~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~---~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (276)
+.+. .+.. .+..++.||.||+|+|++ |+.+++||.+. .++.+... .+. ....+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~-~~~~~i~g~~~~~~~~~~~~~~-~~~-------------~~~~~ 141 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS-ARKLGIPGEDEFLGRGVSYCAT-CDG-------------PFFKN 141 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC-cccCCCCChhhcCCccEEEeee-cCh-------------hhcCC
Confidence 4443 2111 122468899999999998 88888888542 23332211 111 02567
Q ss_pred CeEEEEcCChHHHHHHHHhhc
Q psy12810 255 KNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 255 k~vvVIGgG~~G~E~A~~~~r 275 (276)
++++|||+|++|+|+|..+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~ 162 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR 162 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh
Confidence 899999999999999988764
No 35
>PLN02546 glutathione reductase
Probab=99.61 E-value=1.9e-15 Score=141.28 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCcEEEeeeeeccc---cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCC
Q psy12810 169 VQRRVKLLAAEGIEFKTNINVGKD---IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNE 245 (276)
Q Consensus 169 ~~~~~~~l~~~gv~i~~~~~v~~~---~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~ 245 (276)
...+.+.+++.||+++.+.....+ +..+...+.||+||||||++ |..|++||.+ .++++.+++..
T Consensus 181 ~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~-p~~P~IpG~~--~v~~~~~~l~~--------- 248 (558)
T PLN02546 181 TGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGR-PFIPDIPGIE--HAIDSDAALDL--------- 248 (558)
T ss_pred HHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCC-CCCCCCCChh--hccCHHHHHhc---------
Confidence 334556677889999987543222 11112357899999999998 9999998864 23443332211
Q ss_pred CCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 246 NVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 246 ~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||||++|+|+|..+.+
T Consensus 249 -----~~~~k~V~VIGgG~iGvE~A~~L~~ 273 (558)
T PLN02546 249 -----PSKPEKIAIVGGGYIALEFAGIFNG 273 (558)
T ss_pred -----cccCCeEEEECCCHHHHHHHHHHHh
Confidence 1457899999999999999988764
No 36
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.60 E-value=4.1e-15 Score=137.12 Aligned_cols=144 Identities=20% Similarity=0.290 Sum_probs=100.4
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee-ec-CCCC-------------------------CC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ-YG-IPTM-------------------------KL 164 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~-~~-~~~~-------------------------~~ 164 (276)
+.+.|||+||+ |+.+|..|++.|++|+|||+.+.+||.+. .+ +|.. ..
T Consensus 6 yDvvVIGaGpa-----G~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 6 YDLVVIGSGPA-----GEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred ccEEEECCCHH-----HHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 34455999999 99999999999999999999888888653 22 2210 00
Q ss_pred c-HHHH-----------HHHHHHHHhcCcEEEeeeeeccc-----c---chhhhhcccCEEEEcCCCCCCCCCCCCCcCC
Q psy12810 165 S-KEVV-----------QRRVKLLAAEGIEFKTNINVGKD-----I---AAKELYEEFDALLLCTGATWPRDLPIPGRQL 224 (276)
Q Consensus 165 ~-~~~~-----------~~~~~~l~~~gv~i~~~~~v~~~-----~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~ 224 (276)
+ +++. ....+.+.+.+++++.++....+ + ++....+.||+||+|||+. |+.|++++.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~-p~~p~~~~~~~ 159 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR-PYRPPDVDFDH 159 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCC-CCCCCCCCCCC
Confidence 0 1111 12234456779999988653211 1 1122368899999999998 88888777666
Q ss_pred CCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 225 SGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 225 ~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
++++++.++++. ...+++++|||+|++|+|+|..+.+
T Consensus 160 ~~v~~~~~~~~~--------------~~~~~~v~IiGgG~~g~E~A~~l~~ 196 (461)
T PRK05249 160 PRIYDSDSILSL--------------DHLPRSLIIYGAGVIGCEYASIFAA 196 (461)
T ss_pred CeEEcHHHhhch--------------hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 677776554322 1457899999999999999988765
No 37
>PRK12831 putative oxidoreductase; Provisional
Probab=99.60 E-value=4.2e-15 Score=136.75 Aligned_cols=66 Identities=36% Similarity=0.579 Sum_probs=59.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHH-HHHHHHHHHHhCCCeEEeccccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKE-VVQRRVKLLAAEGIEFKTNINVG 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~-~~~~~~~~l~~~gv~~~~~~~v~ 109 (276)
+||||+||.. |+++||+|+|||+.+.+||++.+++|.++++.+ +..+..++++++||++++++.++
T Consensus 149 GpAGl~aA~~-l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~ 215 (464)
T PRK12831 149 GPAGLTCAGD-LAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG 215 (464)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC
Confidence 6999999999 899999999999998999999999999988866 88888899999999999987543
No 38
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.60 E-value=5.3e-15 Score=135.49 Aligned_cols=165 Identities=22% Similarity=0.286 Sum_probs=111.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC-CCcee-eecC-CCCCC---------CHHHH-----------HHHHHHHHhCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR-VGGLL-QYGI-PTMKL---------SKEVV-----------QRRVKLLAAEG 99 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~-lGG~~-~~~~-~~~~~---------~~~~~-----------~~~~~~l~~~g 99 (276)
.||||+||.. |+++|++|+|+||++. +||+| +.|+ |.... ...+. ....+.+.+.|
T Consensus 12 GpaG~~aA~~-l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 90 (438)
T PRK07251 12 GKAGKTLAAK-LASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYAMLAGSG 90 (438)
T ss_pred CHHHHHHHHH-HHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999 8999999999999764 79998 4554 43321 11111 11235567789
Q ss_pred CeEEeccc---------c---------CccchhhhccCCCCCC--------------------------------CCCCC
Q psy12810 100 IEFKTNIN---------V---------GKDIAAKVTNHTPQSD--------------------------------NQTKH 129 (276)
Q Consensus 100 v~~~~~~~---------v---------~~~v~v~iiG~gp~~~--------------------------------g~~Gl 129 (276)
|++..+.. + .-+..+..+|+.|..+ |++|+
T Consensus 91 V~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~ 170 (438)
T PRK07251 91 VDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGL 170 (438)
T ss_pred CEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHH
Confidence 98876541 0 0011111245433211 56699
Q ss_pred CcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchhhhhcc
Q psy12810 130 CPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAKELYEE 201 (276)
Q Consensus 130 ~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~~~~~~ 201 (276)
++|..|++.|.+|+++++.+.+. + ..++++.....+.+++.||++++++.+..- ...+..+++
T Consensus 171 e~A~~l~~~g~~Vtli~~~~~~l-------~--~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~ 241 (438)
T PRK07251 171 EFAGLYNKLGSKVTVLDAASTIL-------P--REEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYR 241 (438)
T ss_pred HHHHHHHHcCCeEEEEecCCccC-------C--CCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEE
Confidence 99999999999999999988642 1 235566667777888999999998766411 111233588
Q ss_pred cCEEEEcCCCCCCCCCC
Q psy12810 202 FDALLLCTGATWPRDLP 218 (276)
Q Consensus 202 ~D~vVlAtG~~~p~~~~ 218 (276)
+|.||+|+|+. |+...
T Consensus 242 ~D~viva~G~~-p~~~~ 257 (438)
T PRK07251 242 FDALLYATGRK-PNTEP 257 (438)
T ss_pred cCEEEEeeCCC-CCccc
Confidence 99999999998 87654
No 39
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.60 E-value=6e-15 Score=135.35 Aligned_cols=161 Identities=28% Similarity=0.363 Sum_probs=113.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchh--------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA-------- 114 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v-------- 114 (276)
+||||+||.. ++++||+|+|||+.+.+||++.+++|.++.+.++..+..+.++++||+++++..+++++.+
T Consensus 142 G~aGl~aA~~-l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~yd 220 (449)
T TIGR01316 142 GPAGLACASE-LAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQYD 220 (449)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCCHHHHHhhCC
Confidence 6999999999 8999999999999999999999999998999999988889999999999988654332221
Q ss_pred ---hhccC-CCCCC----------------------------------------------CCCCCCcchhhhhCCcEEEE
Q psy12810 115 ---KVTNH-TPQSD----------------------------------------------NQTKHCPPLIVNIVGHSVTV 144 (276)
Q Consensus 115 ---~iiG~-gp~~~----------------------------------------------g~~Gl~~A~~l~~~G~~Vtv 144 (276)
..+|+ .|..+ |.+|+++|..|.+.|.+|++
T Consensus 221 ~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtl 300 (449)
T TIGR01316 221 AVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHC 300 (449)
T ss_pred EEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 12343 12111 34466777777777777777
Q ss_pred EcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c----c------------------------
Q psy12810 145 FERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D----I------------------------ 193 (276)
Q Consensus 145 ie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~----~------------------------ 193 (276)
+++.+.. .++... ...+.+.+.||+|++++.+.. + +
T Consensus 301 v~~~~~~---------~~~~~~----~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 367 (449)
T TIGR01316 301 LYRRTRE---------DMTARV----EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPC 367 (449)
T ss_pred EeecCcc---------cCCCCH----HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeec
Confidence 7765431 011122 234557788999998765431 0 0
Q ss_pred chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 194 AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
.+++.++++|.||+|+|.. |+...
T Consensus 368 ~~~~~~i~~D~Vi~AiG~~-p~~~~ 391 (449)
T TIGR01316 368 GDAECKLEADAVIVAIGNG-SNPIM 391 (449)
T ss_pred CCceEEEECCEEEECCCCC-CCchh
Confidence 0112358899999999998 87643
No 40
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.59 E-value=6.1e-15 Score=135.33 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=111.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CCC-------------------------CCC-----------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PTM-------------------------KLS----------- 84 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~~-------------------------~~~----------- 84 (276)
+|||++||+. |+++|++|+|+|+. .+||+|. .|+ |.. +.+
T Consensus 11 GpaG~~aA~~-aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (446)
T TIGR01424 11 GSGGVRAARL-AANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLLQKKDDE 88 (446)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHHHHHHHH
Confidence 7999999999 99999999999995 7999995 333 221 000
Q ss_pred -HHHHHHHHHHHHhCCCeEEeccc--cC----------c----cchhhhccCCCCCC-----------------------
Q psy12810 85 -KEVVQRRVKLLAAEGIEFKTNIN--VG----------K----DIAAKVTNHTPQSD----------------------- 124 (276)
Q Consensus 85 -~~~~~~~~~~l~~~gv~~~~~~~--v~----------~----~v~v~iiG~gp~~~----------------------- 124 (276)
..+.+.+..++++.||++..+.. ++ . +..+..+|+.|..+
T Consensus 89 ~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~l~~~~~~ 168 (446)
T TIGR01424 89 IARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKS 168 (446)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhhcccccCCe
Confidence 01223344667788998876631 11 0 11111245543221
Q ss_pred ------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc------
Q psy12810 125 ------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD------ 192 (276)
Q Consensus 125 ------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~------ 192 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.|+++++++.+..-
T Consensus 169 vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---~------~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~ 239 (446)
T TIGR01424 169 ILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---R------GFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG 239 (446)
T ss_pred EEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---c------ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe
Confidence 5569999999999999999999887641 1 245677777888889999999999866411
Q ss_pred --cc-hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 193 --IA-AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 193 --~~-~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+. .+..++++|.||+|+|.. |+...
T Consensus 240 ~~v~~~~g~~i~~D~viva~G~~-pn~~~ 267 (446)
T TIGR01424 240 LKVTLSHGEEIVADVVLFATGRS-PNTKG 267 (446)
T ss_pred EEEEEcCCcEeecCEEEEeeCCC-cCCCc
Confidence 01 123358899999999998 87643
No 41
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.59 E-value=3.4e-15 Score=136.97 Aligned_cols=149 Identities=23% Similarity=0.369 Sum_probs=101.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccceeeeecCCCC-----CCcHHHHHHHHHHHHhcCcEEEee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVGGLLQYGIPTM-----KLSKEVVQRRVKLLAAEGIEFKTN 186 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~gg~~~~~~~~~-----~~~~~~~~~~~~~l~~~gv~i~~~ 186 (276)
+.|||+|++ |+++|..|++.+ .+|+|||+++.++ +.+.+++.+ ....++.....+.+.+.|++++++
T Consensus 3 vvIIGgG~a-----Gl~aA~~l~~~~~~~~Vtli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 76 (444)
T PRK09564 3 IIIIGGTAA-----GMSAAAKAKRLNKELEITVYEKTDIVS-FGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTE 76 (444)
T ss_pred EEEECCcHH-----HHHHHHHHHHHCCCCcEEEEECCCcce-eecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEec
Confidence 345999999 999999999875 4899999998763 222222221 122334444456678889999888
Q ss_pred eeecc-c-------cc----hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCC
Q psy12810 187 INVGK-D-------IA----AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKD 254 (276)
Q Consensus 187 ~~v~~-~-------~~----~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (276)
+.+.. + .. ++...+.||+||+|||++ |+.|++||.+.+++++..++.+..+...... ...+
T Consensus 77 ~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~------~~~~ 149 (444)
T PRK09564 77 HEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPIKNINLENVYTLKSMEDGLALKELLK------DEEI 149 (444)
T ss_pred CEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC-CCCCCCCCcCCCCEEEECCHHHHHHHHHHHh------hcCC
Confidence 76641 1 11 111223499999999998 9989999988778876555433322111100 1357
Q ss_pred CeEEEEcCChHHHHHHHHhhc
Q psy12810 255 KNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 255 k~vvVIGgG~~G~E~A~~~~r 275 (276)
++++|||+|++|+|+|..+.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~ 170 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH 170 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 899999999999999998765
No 42
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.58 E-value=1.9e-15 Score=147.03 Aligned_cols=146 Identities=21% Similarity=0.224 Sum_probs=103.1
Q ss_pred hhccCCCCCCCCCCCCcchhhhhC---CcEEEEEcCCCccceeeeecCCCCC----CcHHHHHHHHHHHHhcCcEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIV---GHSVTVFERNDRVGGLLQYGIPTMK----LSKEVVQRRVKLLAAEGIEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~---G~~Vtvie~~~~~gg~~~~~~~~~~----~~~~~~~~~~~~l~~~gv~i~~~~ 187 (276)
+|||+|++ |+.+|..|++. +++||||+++++++ +.+..++.+. ..+++.....+++++.||++++++
T Consensus 2 VIIG~G~A-----G~~aa~~l~~~~~~~~~Itvi~~e~~~~-y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~ 75 (785)
T TIGR02374 2 VLVGNGMA-----GHRCIEEVLKLNRHMFEITIFGEEPHPN-YNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGE 75 (785)
T ss_pred EEECCCHH-----HHHHHHHHHhcCCCCCeEEEEeCCCCCC-cccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCC
Confidence 35999999 99999988764 57899999999864 3333333221 113333334567788999999997
Q ss_pred eec-ccc------chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEE
Q psy12810 188 NVG-KDI------AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260 (276)
Q Consensus 188 ~v~-~~~------~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVI 260 (276)
.|+ .+. ..+..++.||+||+|||+. |+.|++||.+.++++...++ ++.+.+... ...+++++||
T Consensus 76 ~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~-p~~p~ipG~~~~~v~~~rt~-~d~~~i~~~-------~~~~k~vvVV 146 (785)
T TIGR02374 76 TVIQIDTDQKQVITDAGRTLSYDKLILATGSY-PFILPIPGADKKGVYVFRTI-EDLDAIMAM-------AQRFKKAAVI 146 (785)
T ss_pred eEEEEECCCCEEEECCCcEeeCCEEEECCCCC-cCCCCCCCCCCCCEEEeCCH-HHHHHHHHH-------hhcCCeEEEE
Confidence 664 221 1223468899999999998 99999999988888765542 222222110 1467899999
Q ss_pred cCChHHHHHHHHhhc
Q psy12810 261 GGGDTGCDCIATSLR 275 (276)
Q Consensus 261 GgG~~G~E~A~~~~r 275 (276)
|||++|+|+|..+.+
T Consensus 147 GgG~~GlE~A~~L~~ 161 (785)
T TIGR02374 147 GGGLLGLEAAVGLQN 161 (785)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 43
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.58 E-value=9.4e-15 Score=134.15 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=112.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CCC------------------------C--CC-HHHH-----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PTM------------------------K--LS-KEVV----- 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~~------------------------~--~~-~~~~----- 88 (276)
+|||++||+. |+++|++|+|+||. .+||+|. .|+ |.. . .. ..+.
T Consensus 11 GpaG~~aA~~-aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (450)
T TIGR01421 11 GSGGIASARR-AAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPELKEKRDA 88 (450)
T ss_pred CHHHHHHHHH-HHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHHHHHHHHH
Confidence 6999999999 99999999999995 5999984 343 321 0 11 1111
Q ss_pred ------HHHHHHHHhCCCeEEecccc----------Cc----cchhhhccCCCCCC------------------------
Q psy12810 89 ------QRRVKLLAAEGIEFKTNINV----------GK----DIAAKVTNHTPQSD------------------------ 124 (276)
Q Consensus 89 ------~~~~~~l~~~gv~~~~~~~v----------~~----~v~v~iiG~gp~~~------------------------ 124 (276)
+.+...+++.||++++++.. +. +..+..+|+.|..|
T Consensus 89 ~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~~~~~~~~ 168 (450)
T TIGR01421 89 YVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKR 168 (450)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHhhCccccCCe
Confidence 22345677789999877531 01 11111245543211
Q ss_pred ------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc------
Q psy12810 125 ------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD------ 192 (276)
Q Consensus 125 ------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~------ 192 (276)
|++|+++|..|++.|.+||++++.+.+. + ..++++...+.+.+++.||++++++.+..-
T Consensus 169 vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il---~------~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~ 239 (450)
T TIGR01421 169 VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL---R------SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEG 239 (450)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---c------ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc
Confidence 5669999999999999999999988742 1 356777778888899999999999876421
Q ss_pred ---c--chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 193 ---I--AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 193 ---~--~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
. ++.+..+++|.||+|+|.. |+...
T Consensus 240 ~~~v~~~~g~~~i~~D~vi~a~G~~-pn~~~ 269 (450)
T TIGR01421 240 KLVIHFEDGKSIDDVDELIWAIGRK-PNTKG 269 (450)
T ss_pred eEEEEECCCcEEEEcCEEEEeeCCC-cCccc
Confidence 0 1111357899999999998 87653
No 44
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.58 E-value=1.2e-14 Score=134.03 Aligned_cols=169 Identities=19% Similarity=0.208 Sum_probs=94.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee-eecCCCCCCCHHHHHHHH--H--HHHhCCCeEEeccccCccchhhhc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL-QYGIPTMKLSKEVVQRRV--K--LLAAEGIEFKTNINVGKDIAAKVT 117 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~-~~~~~~~~~~~~~~~~~~--~--~l~~~gv~~~~~~~v~~~v~v~ii 117 (276)
+|||++||+. |+++|++|+|+|+++.+||+| +.|+-+.+......+.+. . .+.+.|++...
T Consensus 12 GpaG~~AA~~-aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~------------- 77 (466)
T PRK06115 12 GPGGYNAAIR-AGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKP------------- 77 (466)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccC-------------
Confidence 7999999999 999999999999877899998 456622222211111111 1 12233332210
Q ss_pred cCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeec-------
Q psy12810 118 NHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG------- 190 (276)
Q Consensus 118 G~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~------- 190 (276)
.......+.+ ... .-..+.......+++.+|+++.+....
T Consensus 78 ----------~~~~~~~~~~----------~~~-------------~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~ 124 (466)
T PRK06115 78 ----------TLNLAQMMKQ----------KDE-------------SVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVV 124 (466)
T ss_pred ----------ccCHHHHHHH----------HHH-------------HHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEE
Confidence 0000110100 000 001111223344556788887764321
Q ss_pred ccc-chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCC--eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHH
Q psy12810 191 KDI-AAKELYEEFDALLLCTGATWPRDLPIPGRQLSG--IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGC 267 (276)
Q Consensus 191 ~~~-~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~g--v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~ 267 (276)
... ++++.++.||+||||||++ |. ++||.+..+ ++++.+++.. ...+++++|||+|++|+
T Consensus 125 v~~~~g~~~~~~~d~lVIATGs~-p~--~ipg~~~~~~~~~~~~~~~~~--------------~~~~~~vvIIGgG~ig~ 187 (466)
T PRK06115 125 VKAEDGSETQLEAKDIVIATGSE-PT--PLPGVTIDNQRIIDSTGALSL--------------PEVPKHLVVIGAGVIGL 187 (466)
T ss_pred EEcCCCceEEEEeCEEEEeCCCC-CC--CCCCCCCCCCeEECHHHHhCC--------------ccCCCeEEEECCCHHHH
Confidence 111 1222468999999999998 74 356654333 4443322210 14579999999999999
Q ss_pred HHHHHhhc
Q psy12810 268 DCIATSLR 275 (276)
Q Consensus 268 E~A~~~~r 275 (276)
|+|..+.+
T Consensus 188 E~A~~l~~ 195 (466)
T PRK06115 188 ELGSVWRR 195 (466)
T ss_pred HHHHHHHH
Confidence 99988764
No 45
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.57 E-value=6e-15 Score=136.38 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=64.5
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc-----------
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI----------- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~----------- 193 (276)
|++|+++|..|++.|.+|+++++.+.+. | ..+.++...+.+.+++.||++++++.+....
T Consensus 189 G~~G~E~A~~l~~~g~~Vtli~~~~~il-------~--~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~ 259 (472)
T PRK05976 189 GVIGLEWASMLADFGVEVTVVEAADRIL-------P--TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVA 259 (472)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEecCccC-------C--cCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEE
Confidence 5669999999999999999999988642 1 2456677777788899999999998664210
Q ss_pred --chhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 194 --AAKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 194 --~~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
+++..++++|.||+|+|.. |+...+
T Consensus 260 ~~~g~~~~i~~D~vi~a~G~~-p~~~~l 286 (472)
T PRK05976 260 EHNGEEKTLEADKVLVSVGRR-PNTEGI 286 (472)
T ss_pred EeCCceEEEEeCEEEEeeCCc-cCCCCC
Confidence 1112358899999999998 876544
No 46
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.56 E-value=9.6e-15 Score=134.04 Aligned_cols=140 Identities=18% Similarity=0.244 Sum_probs=94.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee-ec-CCCC-------------------------CCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ-YG-IPTM-------------------------KLS 165 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~-~~-~~~~-------------------------~~~ 165 (276)
.+.|||+||+ |+++|..+++.|++|+|+|+. .+||.+. .+ +|.. ..+
T Consensus 4 DvvVIG~Gpa-----G~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 4 DLFVIGAGSG-----GVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cEEEECCCHH-----HHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 3445999999 999999999999999999984 6777543 11 1110 011
Q ss_pred ------------HHHHHHHHHHHHhcCcEEEeeeeeccc-----cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCee
Q psy12810 166 ------------KEVVQRRVKLLAAEGIEFKTNINVGKD-----IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIY 228 (276)
Q Consensus 166 ------------~~~~~~~~~~l~~~gv~i~~~~~v~~~-----~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~ 228 (276)
.++...+.+.+.+.|++++.+.....+ +..+...+.||+||+|||++ |+.|++||.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~-p~~p~i~G~~~--~~ 154 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGR-PQKPNLPGHEL--GI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCc-CCCCCCCCccc--ee
Confidence 012223345567789999888643221 11122358999999999998 99889988642 22
Q ss_pred ehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 229 FAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
++.+.+. . ...+++++|||+|++|+|+|..+.+
T Consensus 155 ~~~~~~~----l----------~~~~~~vvVIGgG~~g~E~A~~l~~ 187 (446)
T TIGR01424 155 TSNEAFH----L----------PTLPKSILILGGGYIAVEFAGIWRG 187 (446)
T ss_pred chHHhhc----c----------cccCCeEEEECCcHHHHHHHHHHHH
Confidence 3222211 0 1357899999999999999988764
No 47
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.56 E-value=8.5e-15 Score=134.44 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=94.1
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-eec-CCC-----------------------C---C
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-QYG-IPT-----------------------M---K 163 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~~~-~~~-----------------------~---~ 163 (276)
+.+.|||+||+ |+.+|..+++.|++|+|||+. .+||.+ +++ +|. . .
T Consensus 3 yDvvVIG~Gpa-----G~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 3 YDYLVIGGGSG-----GIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCEEEECcCHH-----HHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 34456999999 999999999999999999985 477743 221 121 0 0
Q ss_pred Cc-HH-----------HHHHHHHHHHhcCcEEEeeeeecccc---chhhhhcccCEEEEcCCCCCCCCC-CCCCcCCCCe
Q psy12810 164 LS-KE-----------VVQRRVKLLAAEGIEFKTNINVGKDI---AAKELYEEFDALLLCTGATWPRDL-PIPGRQLSGI 227 (276)
Q Consensus 164 ~~-~~-----------~~~~~~~~l~~~gv~i~~~~~v~~~~---~~~~~~~~~D~vVlAtG~~~p~~~-~i~g~~~~gv 227 (276)
.+ ++ +...+...+.+.||+++.++....+. ..+...+.||+||+|||++ |+.| ++||.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~-p~~p~~i~g~~~~-- 153 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGK-PSFPENIPGAELG-- 153 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCC-CCCCCCCCCCcee--
Confidence 11 11 11123344667799999998643211 1112358999999999998 8888 78876421
Q ss_pred eehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 228 YFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.++.+++.. ...+++++|||||++|+|+|..+.+
T Consensus 154 ~~~~~~~~~--------------~~~~~~vvIIGgG~iG~E~A~~l~~ 187 (450)
T TIGR01421 154 TDSDGFFAL--------------EELPKRVVIVGAGYIAVELAGVLHG 187 (450)
T ss_pred EcHHHhhCc--------------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 222222210 1346899999999999999998765
No 48
>PRK10262 thioredoxin reductase; Provisional
Probab=99.56 E-value=1e-14 Score=128.33 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=97.1
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee-----cCCCC---CCcHHHHHHHHHHHHhcC
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY-----GIPTM---KLSKEVVQRRVKLLAAEG 180 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~-----~~~~~---~~~~~~~~~~~~~l~~~g 180 (276)
.+++.| ||+||+ |+++|..|+++|+++++||.. ..||.+.. .+|.. ...+++.+++.+.....+
T Consensus 6 ~~~vvI--IGgGpa-----Gl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (321)
T PRK10262 6 HSKLLI--LGSGPA-----GYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE 77 (321)
T ss_pred cCCEEE--ECCCHH-----HHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 345544 999999 999999999999999999954 45655432 22221 122345666667777777
Q ss_pred cEEEeeee--eccc-----cchhhhhcccCEEEEcCCCCCCCCCCCCCcCC---CCeeehHHHHHHHHHhhcCCCCCCCC
Q psy12810 181 IEFKTNIN--VGKD-----IAAKELYEEFDALLLCTGATWPRDLPIPGRQL---SGIYFAMSFLESWQKKQMGNENVSPI 250 (276)
Q Consensus 181 v~i~~~~~--v~~~-----~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~---~gv~~~~~~l~~~~~~~~~~~~~~~~ 250 (276)
++++.+.. +... .+.+...+.||+||+|||++ |+.|++||.+. .++..+ ..++..
T Consensus 78 ~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~-~~~~~i~g~~~~~~~~v~~~-~~~~~~------------- 142 (321)
T PRK10262 78 TEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGAS-ARYLGLPSEEAFKGRGVSAC-ATCDGF------------- 142 (321)
T ss_pred CEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCC-CCCCCCCCHHHcCCCcEEEe-ecCCHH-------------
Confidence 77766542 2210 11112357899999999998 99899998552 333332 112221
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 251 SAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 251 ~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||+|++|+|+|..+.+
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~ 167 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSN 167 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHh
Confidence 1568999999999999999988764
No 49
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.56 E-value=1.4e-14 Score=140.78 Aligned_cols=68 Identities=38% Similarity=0.616 Sum_probs=62.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~ 111 (276)
+||||+||.. |+++||+|+|||+.+.+||++.||+|.++++.+++++..++++++||++++++.++++
T Consensus 440 GpAGl~aA~~-l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~ 507 (752)
T PRK12778 440 GPAGLSFAGD-LAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKT 507 (752)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCc
Confidence 6999999999 8999999999999888999999999999999999999999999999999988655433
No 50
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.56 E-value=2.1e-14 Score=132.39 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=112.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CCCC--------------------------CCHHHHHH----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PTMK--------------------------LSKEVVQR---- 90 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~~~--------------------------~~~~~~~~---- 90 (276)
+|||++||+. |+++|++|+|+||+. +||+|. .|+ |... ....+.++
T Consensus 13 GpaG~~aA~~-aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 90 (462)
T PRK06416 13 GPGGYVAAIR-AAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKVQEWKNGV 90 (462)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHHHHHHHHH
Confidence 6999999999 899999999999976 999984 443 3210 11222222
Q ss_pred -------HHHHHHhCCCeEEeccc---------cC-----c----cchhhhccCCCCCC---------------------
Q psy12810 91 -------RVKLLAAEGIEFKTNIN---------VG-----K----DIAAKVTNHTPQSD--------------------- 124 (276)
Q Consensus 91 -------~~~~l~~~gv~~~~~~~---------v~-----~----~v~v~iiG~gp~~~--------------------- 124 (276)
+...+++.||++..++. +. . +..+..+|+.|..+
T Consensus 91 ~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~~~~~~~~~~ 170 (462)
T PRK06416 91 VNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDE 170 (462)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEcchHhhCccc
Confidence 23456678999887641 10 0 11111234433211
Q ss_pred ----------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--
Q psy12810 125 ----------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD-- 192 (276)
Q Consensus 125 ----------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~-- 192 (276)
|++|+++|..|++.|.+||++++.+.+. | ..++++...+.+.+++.||++++++.+..-
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------~--~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~ 241 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------P--GEDKEISKLAERALKKRGIKIKTGAKAKKVEQ 241 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------C--cCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence 5669999999999999999999988742 1 245677777888889999999999876410
Q ss_pred ------cc----hhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 193 ------IA----AKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 193 ------~~----~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
.. ++..++++|.||+|+|.+ |+...+
T Consensus 242 ~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~-p~~~~l 277 (462)
T PRK06416 242 TDDGVTVTLEDGGKEETLEADYVLVAVGRR-PNTENL 277 (462)
T ss_pred eCCEEEEEEEeCCeeEEEEeCEEEEeeCCc-cCCCCC
Confidence 11 111458899999999998 876543
No 51
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.56 E-value=2.3e-14 Score=132.19 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=101.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecCCCCCCCHHHHH--HHHHHHHhCCCeEEeccccCccchhhhccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGIPTMKLSKEVVQ--RRVKLLAAEGIEFKTNINVGKDIAAKVTNH 119 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~~~~~~~~~~~~--~~~~~l~~~gv~~~~~~~v~~~v~v~iiG~ 119 (276)
+|||++||.. |+++|++|+|+||+. +||+|. .|+.+.|..-...+ .......+.|+........ ++.+
T Consensus 10 G~~G~~~a~~-~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~--~~~~----- 80 (466)
T PRK07845 10 GPGGYEAALV-AAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEA--RVDL----- 80 (466)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccc--ccCH-----
Confidence 6999999999 899999999999974 999994 56643332211111 1112233334322100000 0000
Q ss_pred CCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeec----cc---
Q psy12810 120 TPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG----KD--- 192 (276)
Q Consensus 120 gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~----~~--- 192 (276)
. .+. ++.. ...+.+.....+.+++.||+++.++... .+
T Consensus 81 ------------~-~~~---------~~~~-------------~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~ 125 (466)
T PRK07845 81 ------------P-AVN---------ARVK-------------ALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHR 125 (466)
T ss_pred ------------H-HHH---------HHHH-------------HHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCE
Confidence 0 000 0000 0111122344566777899998885432 11
Q ss_pred --c---chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHH
Q psy12810 193 --I---AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGC 267 (276)
Q Consensus 193 --~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~ 267 (276)
+ +++..++.||+||+|||+. |+.++.++.+...+++..++++. ...+++++|||+|++|+
T Consensus 126 v~V~~~~g~~~~~~~d~lViATGs~-p~~~p~~~~~~~~v~~~~~~~~~--------------~~~~~~vvVIGgG~ig~ 190 (466)
T PRK07845 126 VKVTTADGGEETLDADVVLIATGAS-PRILPTAEPDGERILTWRQLYDL--------------DELPEHLIVVGSGVTGA 190 (466)
T ss_pred EEEEeCCCceEEEecCEEEEcCCCC-CCCCCCCCCCCceEEeehhhhcc--------------cccCCeEEEECCCHHHH
Confidence 1 1112358899999999998 87766555444556664443321 13468999999999999
Q ss_pred HHHHHhhc
Q psy12810 268 DCIATSLR 275 (276)
Q Consensus 268 E~A~~~~r 275 (276)
|+|..+.+
T Consensus 191 E~A~~l~~ 198 (466)
T PRK07845 191 EFASAYTE 198 (466)
T ss_pred HHHHHHHH
Confidence 99988764
No 52
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.55 E-value=1.5e-14 Score=132.63 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=95.9
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC-ccceeee-ec-CCCCC--------Cc-H-------HHHHHH-
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND-RVGGLLQ-YG-IPTMK--------LS-K-------EVVQRR- 172 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~-~~gg~~~-~~-~~~~~--------~~-~-------~~~~~~- 172 (276)
.+.|||+||+ |+.+|..|++.|++|+|||+.+ .+||.+. .+ +|... .+ . ++...+
T Consensus 5 DvvVIGgGpa-----Gl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 5 QAVIIGFGKA-----GKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CEEEECCCHh-----HHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3445999999 9999999999999999999976 3677653 22 22210 01 0 111111
Q ss_pred ---HHHHHh-cCcEEEeeeeeccc-----c--chhhhhcccCEEEEcCCCCCCCCCCCCCcC-CCCeeehHHHHHHHHHh
Q psy12810 173 ---VKLLAA-EGIEFKTNINVGKD-----I--AAKELYEEFDALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKK 240 (276)
Q Consensus 173 ---~~~l~~-~gv~i~~~~~v~~~-----~--~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~-~~gv~~~~~~l~~~~~~ 240 (276)
.+.+.+ .|++++.++....+ + .+...++.||+||+|||++ |..|++||.+ .++++++.+++..
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~-p~~p~i~G~~~~~~v~~~~~~~~~---- 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQ-TVVPPIPGITTTPGVYDSTGLLNL---- 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCc-CCCCCCCCccCCCCEEChhHhhcc----
Confidence 122333 38998887642211 1 1122358899999999998 9999999975 4677765443321
Q ss_pred hcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 241 QMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 241 ~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||+|++|+|+|..+.+
T Consensus 155 ----------~~~~~~v~ViGgG~~g~E~A~~l~~ 179 (441)
T PRK08010 155 ----------KELPGHLGILGGGYIGVEFASMFAN 179 (441)
T ss_pred ----------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 1356899999999999999998764
No 53
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.55 E-value=1.2e-14 Score=139.11 Aligned_cols=68 Identities=43% Similarity=0.680 Sum_probs=63.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~ 111 (276)
+||||+||.. |++.||+|+|||+.+.+||++.+++|.++++++++.+..++++++|+++++++.++.+
T Consensus 336 GpAGLsaA~~-L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 336 GPAGLACADV-LARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 7999999999 8999999999999999999999999999999999999999999999999998766543
No 54
>PRK06370 mercuric reductase; Validated
Probab=99.55 E-value=2.9e-14 Score=131.55 Aligned_cols=164 Identities=20% Similarity=0.209 Sum_probs=111.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CC--------------------------CCCC-HHHH-----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PT--------------------------MKLS-KEVV----- 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~--------------------------~~~~-~~~~----- 88 (276)
+|||++||+. |+++|++|+|+||. .+||+|. .|+ |. .+.+ ..+.
T Consensus 14 GpaG~~aA~~-aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 91 (463)
T PRK06370 14 GQAGPPLAAR-AAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAVMARKRR 91 (463)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHHHHHHHH
Confidence 6999999999 89999999999996 5899884 343 22 1111 1111
Q ss_pred ------HHHHHHHHhC-CCeEEecccc----------Cc----cchhhhccCCCCCC-----------------------
Q psy12810 89 ------QRRVKLLAAE-GIEFKTNINV----------GK----DIAAKVTNHTPQSD----------------------- 124 (276)
Q Consensus 89 ------~~~~~~l~~~-gv~~~~~~~v----------~~----~v~v~iiG~gp~~~----------------------- 124 (276)
.....++++. ||++++++.+ +. +..+..+|+.|..+
T Consensus 92 ~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~ 171 (463)
T PRK06370 92 IRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELP 171 (463)
T ss_pred HHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcchHhhCccccC
Confidence 1233556676 9999877521 11 11111244433221
Q ss_pred --------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-c---
Q psy12810 125 --------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D--- 192 (276)
Q Consensus 125 --------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~--- 192 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..+.++...+.+.+++.||++++++.+.. +
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---~------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~ 242 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---P------REDEDVAAAVREILEREGIDVRLNAECIRVERDG 242 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---c------ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC
Confidence 5569999999999999999999988752 1 24566677778888999999999977641 0
Q ss_pred ------c--chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 193 ------I--AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 193 ------~--~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
. .++..++++|.||+|+|.. |+...
T Consensus 243 ~~~~v~~~~~~~~~~i~~D~Vi~A~G~~-pn~~~ 275 (463)
T PRK06370 243 DGIAVGLDCNGGAPEITGSHILVAVGRV-PNTDD 275 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEECcCCC-cCCCC
Confidence 0 1123358899999999998 87653
No 55
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.55 E-value=1.6e-14 Score=141.37 Aligned_cols=63 Identities=35% Similarity=0.546 Sum_probs=59.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNI 106 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 106 (276)
+||||+||+. |+++||+|||||+++.+||++++++|.++.+.+.+++..+++.++||+++++.
T Consensus 546 GPAGLSAA~~-LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~ 608 (1012)
T TIGR03315 546 GPAGLSAGYF-LARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC 608 (1012)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence 7999999999 89999999999999999999999999999999999999999999999999884
No 56
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.55 E-value=1.8e-14 Score=130.82 Aligned_cols=146 Identities=22% Similarity=0.331 Sum_probs=103.6
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeeec-CCCC--------------------------
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQYG-IPTM-------------------------- 162 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~~-~~~~-------------------------- 162 (276)
++.+.+||+||+ |..+|..+++.|.+|.++|+.+.+|| ++++| +|..
T Consensus 4 ~yDvvVIG~Gpa-----G~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 4 EYDVVVIGAGPA-----GYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred cccEEEECCCHH-----HHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 344556999999 99999999999999999999976666 34433 2210
Q ss_pred CCc-HHHHH-----------HHHHHHHhcCcEEEeeeeeccc-----cch-hhhhcccCEEEEcCCCCCCCCCCCCCcCC
Q psy12810 163 KLS-KEVVQ-----------RRVKLLAAEGIEFKTNINVGKD-----IAA-KELYEEFDALLLCTGATWPRDLPIPGRQL 224 (276)
Q Consensus 163 ~~~-~~~~~-----------~~~~~l~~~gv~i~~~~~v~~~-----~~~-~~~~~~~D~vVlAtG~~~p~~~~i~g~~~ 224 (276)
..+ +++.. .....++++||+++.++.-..+ +.+ +..++.+|++|||||++ |+.|++++.+.
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~-p~~~~~~~~~~ 157 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSR-PRIPPGPGIDG 157 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCC-CcCCCCCCCCC
Confidence 011 11111 1223445669999888754321 111 24678999999999999 99999999887
Q ss_pred CCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 225 SGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 225 ~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
..++++.+.+.. ...+++++|||||++|+|+|..+.+|
T Consensus 158 ~~~~~s~~~l~~--------------~~lP~~lvIiGgG~IGlE~a~~~~~L 195 (454)
T COG1249 158 ARILDSSDALFL--------------LELPKSLVIVGGGYIGLEFASVFAAL 195 (454)
T ss_pred CeEEechhhccc--------------ccCCCEEEEECCCHHHHHHHHHHHHc
Confidence 777765553332 25689999999999999999998775
No 57
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.55 E-value=2.4e-14 Score=131.98 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=112.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee-cC-CCCC-------------------------CC-HHHH------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY-GI-PTMK-------------------------LS-KEVV------ 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~-~~-~~~~-------------------------~~-~~~~------ 88 (276)
+|||++||+. |+++|++|+||||++.+||+|.+ ++ |... .+ ..+.
T Consensus 14 GpaG~~aA~~-la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (461)
T PRK05249 14 GPAGEGAAMQ-AAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADLLARADHV 92 (461)
T ss_pred CHHHHHHHHH-HHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHHHHHHHHH
Confidence 6999999999 89999999999998789999943 43 2110 00 1111
Q ss_pred -----HHHHHHHHhCCCeEEecccc-------------Cc------cchhhhccCCCCCC--------------------
Q psy12810 89 -----QRRVKLLAAEGIEFKTNINV-------------GK------DIAAKVTNHTPQSD-------------------- 124 (276)
Q Consensus 89 -----~~~~~~l~~~gv~~~~~~~v-------------~~------~v~v~iiG~gp~~~-------------------- 124 (276)
+...+++++.||+++.+... +. +..+..+|+.|..|
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~~~~~~~~ 172 (461)
T PRK05249 93 INKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLD 172 (461)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcHHHhhchh
Confidence 12234566788988766320 00 11111245544321
Q ss_pred -----------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-
Q psy12810 125 -----------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD- 192 (276)
Q Consensus 125 -----------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~- 192 (276)
|.+|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.|+++++++.+..-
T Consensus 173 ~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---~------~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~ 243 (461)
T PRK05249 173 HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL---S------FLDDEISDALSYHLRDSGVTIRHNEEVEKVE 243 (461)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---C------cCCHHHHHHHHHHHHHcCCEEEECCEEEEEE
Confidence 5568999999999999999999988752 1 356778888888899999999998876521
Q ss_pred -------cc-hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 193 -------IA-AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 193 -------~~-~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
.. .+..++++|.||+|+|.+ |+...
T Consensus 244 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~~~~ 276 (461)
T PRK05249 244 GGDDGVIVHLKSGKKIKADCLLYANGRT-GNTDG 276 (461)
T ss_pred EeCCeEEEEECCCCEEEeCEEEEeecCC-ccccC
Confidence 00 112357899999999998 87653
No 58
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.54 E-value=2.3e-14 Score=132.18 Aligned_cols=141 Identities=24% Similarity=0.382 Sum_probs=92.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-eec-CCCC-------------------------CC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-QYG-IPTM-------------------------KL 164 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~~~-~~~~-------------------------~~ 164 (276)
+.+.+||+||+ |+.+|..+++.|++|+|+|+.. +||.+ +.+ +|.. ..
T Consensus 5 yDvvVIGaGpa-----G~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (462)
T PRK06416 5 YDVIVIGAGPG-----GYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGI 78 (462)
T ss_pred ccEEEECCCHH-----HHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCcc
Confidence 34445999999 9999999999999999999877 77754 332 2210 00
Q ss_pred c-HHHHHH-----------HHHHHHhcCcEEEeeeeeccc-----cc--hhhhhcccCEEEEcCCCCCCCCCCCCCcCCC
Q psy12810 165 S-KEVVQR-----------RVKLLAAEGIEFKTNINVGKD-----IA--AKELYEEFDALLLCTGATWPRDLPIPGRQLS 225 (276)
Q Consensus 165 ~-~~~~~~-----------~~~~l~~~gv~i~~~~~v~~~-----~~--~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~ 225 (276)
+ +++.++ +...+++.||+++.++....+ +. .....+.||+||+|||++ |..+ ||.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~-p~~~--pg~~~~ 155 (462)
T PRK06416 79 DFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSR-PREL--PGIEID 155 (462)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCC-CCCC--CCCCCC
Confidence 1 122222 233456789999998743211 11 112468899999999998 7653 455433
Q ss_pred C--eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 226 G--IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 226 g--v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+ ++++.+.+.. ...+++++|||+|++|+|+|..+.+
T Consensus 156 ~~~v~~~~~~~~~--------------~~~~~~vvVvGgG~~g~E~A~~l~~ 193 (462)
T PRK06416 156 GRVIWTSDEALNL--------------DEVPKSLVVIGGGYIGVEFASAYAS 193 (462)
T ss_pred CCeEEcchHhhCc--------------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 3 4443332211 1346899999999999999988764
No 59
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.54 E-value=1.6e-14 Score=133.27 Aligned_cols=140 Identities=24% Similarity=0.390 Sum_probs=96.7
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-eec-CCC-----------------C-------CCc---
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-QYG-IPT-----------------M-------KLS--- 165 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~~~-~~~-----------------~-------~~~--- 165 (276)
.|||+||+ |+.+|..++++|++|+|||+.+ +||.+ +++ +|. + ..+
T Consensus 4 vVIGaGpa-----G~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 4 VIIGSGAA-----AFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 35999999 9999999999999999999876 56543 322 121 0 000
Q ss_pred -----HHHHHH-----HHHHHHhcCcEEEeeeeeccc-----cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeeh
Q psy12810 166 -----KEVVQR-----RVKLLAAEGIEFKTNINVGKD-----IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFA 230 (276)
Q Consensus 166 -----~~~~~~-----~~~~l~~~gv~i~~~~~v~~~-----~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~ 230 (276)
+++... ..+.+++.||+++.++....+ ..+....+.+|+||+|||++ |+.|++||.+..+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~-p~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGAR-PAIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCC-CCCCCCCCcccCceECc
Confidence 112111 224466779999988754211 11212357899999999998 99999999876666665
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 231 MSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+++.. ...+++++|||+|++|+|+|..+.+
T Consensus 157 ~~~~~~--------------~~~~~~vvIIGgG~~g~E~A~~l~~ 187 (463)
T TIGR02053 157 EEALAL--------------DRIPESLAVIGGGAIGVELAQAFAR 187 (463)
T ss_pred hhhhCc--------------ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 443221 1346899999999999999988765
No 60
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.54 E-value=2.5e-14 Score=132.29 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=90.6
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee-ec-CCC-----------------------C--CC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ-YG-IPT-----------------------M--KL 164 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~-~~-~~~-----------------------~--~~ 164 (276)
+.+.|||+||+ |+.+|..+++.|++|+|||+. .+||.+. ++ +|. . ..
T Consensus 5 ydvvVIG~Gpa-----G~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 5 YDLVIIGGGPG-----GYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccEEEECCCHH-----HHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 34445999999 999999999999999999986 6777552 21 111 0 01
Q ss_pred c-HHH-------HH----HHHHHHHhcCcEEEeeeeeccc------------c---chhhhhcccCEEEEcCCCCCCCCC
Q psy12810 165 S-KEV-------VQ----RRVKLLAAEGIEFKTNINVGKD------------I---AAKELYEEFDALLLCTGATWPRDL 217 (276)
Q Consensus 165 ~-~~~-------~~----~~~~~l~~~gv~i~~~~~v~~~------------~---~~~~~~~~~D~vVlAtG~~~p~~~ 217 (276)
+ +.+ .. ...+.+++.||+++.++....+ + +++..++.||+||+|||++ |+.+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p~~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVEL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCC-CCCC
Confidence 1 111 11 1123455679999998643211 1 1112468899999999998 7654
Q ss_pred CCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 218 PIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 218 ~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+....+...++++.+.+. . ...+++++|||||++|+|+|..+.+
T Consensus 158 p~~~~~~~~~~~~~~~~~----~----------~~~~~~vvIIGgG~~G~E~A~~l~~ 201 (472)
T PRK05976 158 PGLPFDGEYVISSDEALS----L----------ETLPKSLVIVGGGVIGLEWASMLAD 201 (472)
T ss_pred CCCCCCCceEEcchHhhC----c----------cccCCEEEEECCCHHHHHHHHHHHH
Confidence 322222233444333221 0 1346899999999999999998875
No 61
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.53 E-value=1.9e-14 Score=130.09 Aligned_cols=141 Identities=14% Similarity=0.244 Sum_probs=95.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCc--EEEEEcCCCccceeeeecCCCCCCcHHHH---------HHHHHHHHhcCcEE
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGH--SVTVFERNDRVGGLLQYGIPTMKLSKEVV---------QRRVKLLAAEGIEF 183 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~--~Vtvie~~~~~gg~~~~~~~~~~~~~~~~---------~~~~~~l~~~gv~i 183 (276)
.|||+|++ |+++|..|++.|+ +|+++++++... |..| ++++.+. ....+++.+.+|++
T Consensus 7 vIIGgG~A-----G~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~--~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 75 (396)
T PRK09754 7 IIVGGGQA-----AAMAAASLRQQGFTGELHLFSDERHLP----YERP--PLSKSMLLEDSPQLQQVLPANWWQENNVHL 75 (396)
T ss_pred EEECChHH-----HHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCC--CCCHHHHCCCCccccccCCHHHHHHCCCEE
Confidence 34999999 9999999999887 699999887543 2212 1222111 11234567789999
Q ss_pred Eeeeeec-ccc------chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCe
Q psy12810 184 KTNINVG-KDI------AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKN 256 (276)
Q Consensus 184 ~~~~~v~-~~~------~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 256 (276)
+.++.|. .+. ..+...+.||+||+|||+. |+.+++++...+++++..+..+. ..+... ...+++
T Consensus 76 ~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~-~~~~p~~~~~~~~v~~~~~~~da-~~l~~~-------~~~~~~ 146 (396)
T PRK09754 76 HSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAA-ARPLPLLDALGERCFTLRHAGDA-ARLREV-------LQPERS 146 (396)
T ss_pred EcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCC-CCCCCCCCcCCCCEEecCCHHHH-HHHHHH-------hhcCCe
Confidence 9987653 111 1122358999999999998 88877776666677764332222 111110 246789
Q ss_pred EEEEcCChHHHHHHHHhhc
Q psy12810 257 VIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 257 vvVIGgG~~G~E~A~~~~r 275 (276)
++|||+|++|+|+|..+.+
T Consensus 147 vvViGgG~ig~E~A~~l~~ 165 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQ 165 (396)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 62
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.53 E-value=3.6e-14 Score=131.16 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=57.3
Q ss_pred HHHHHHh-cCcEEEeeeeeccc-----cc----h---hhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHH
Q psy12810 172 RVKLLAA-EGIEFKTNINVGKD-----IA----A---KELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238 (276)
Q Consensus 172 ~~~~l~~-~gv~i~~~~~v~~~-----~~----~---~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~ 238 (276)
..+.+++ .||+++.+.....+ +. + ....+.||+||+|||++ |+.|++||.+. +++..+++.
T Consensus 109 ~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~-p~~p~i~G~~~--~~~~~~~~~--- 182 (486)
T TIGR01423 109 YEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSW-PQMLGIPGIEH--CISSNEAFY--- 182 (486)
T ss_pred HHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCC-CCCCCCCChhh--eechhhhhc---
Confidence 3344555 48888887653211 11 0 12468999999999998 99999988652 333322221
Q ss_pred HhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhh
Q psy12810 239 KKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 239 ~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
. ...+++++|||||++|+|+|..+.
T Consensus 183 -~----------~~~~~~vvIIGgG~iG~E~A~~~~ 207 (486)
T TIGR01423 183 -L----------DEPPRRVLTVGGGFISVEFAGIFN 207 (486)
T ss_pred -c----------ccCCCeEEEECCCHHHHHHHHHHH
Confidence 0 135789999999999999997553
No 63
>PRK06116 glutathione reductase; Validated
Probab=99.53 E-value=2.9e-14 Score=131.03 Aligned_cols=164 Identities=17% Similarity=0.208 Sum_probs=109.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CCC---------------------C-----CC-HHHH-----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PTM---------------------K-----LS-KEVV----- 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~~---------------------~-----~~-~~~~----- 88 (276)
+||||+||+. |+++|++|+|+|+. .+||+|. .|+ |.. . .. ..+.
T Consensus 13 GpaG~~aA~~-~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 90 (450)
T PRK06116 13 GSGGIASANR-AAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAKLIANRDA 90 (450)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 6999999999 89999999999996 7999983 332 210 0 00 1111
Q ss_pred ------HHHHHHHHhCCCeEEecccc----------C----ccchhhhccCCCCCC------------------------
Q psy12810 89 ------QRRVKLLAAEGIEFKTNINV----------G----KDIAAKVTNHTPQSD------------------------ 124 (276)
Q Consensus 89 ------~~~~~~l~~~gv~~~~~~~v----------~----~~v~v~iiG~gp~~~------------------------ 124 (276)
+.+.+.+++.||++..+... + -+..+..+|+.|..|
T Consensus 91 ~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~~~~~~v 170 (450)
T PRK06116 91 YIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRV 170 (450)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhhCccccCCeE
Confidence 11234566789998876410 0 011111234433211
Q ss_pred -----CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc---c--
Q psy12810 125 -----NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI---A-- 194 (276)
Q Consensus 125 -----g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~---~-- 194 (276)
|.+|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+..-. +
T Consensus 171 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---~------~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~ 241 (450)
T PRK06116 171 AVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---R------GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS 241 (450)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc---c------ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce
Confidence 4559999999999999999999887641 1 3466777788888999999999998764210 0
Q ss_pred -----hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 195 -----AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 195 -----~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
.+..++++|.||+|+|.. |+...
T Consensus 242 ~~v~~~~g~~i~~D~Vv~a~G~~-p~~~~ 269 (450)
T PRK06116 242 LTLTLEDGETLTVDCLIWAIGRE-PNTDG 269 (450)
T ss_pred EEEEEcCCcEEEeCEEEEeeCCC-cCCCC
Confidence 112357899999999998 87654
No 64
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.53 E-value=1.5e-14 Score=141.08 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=101.7
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhC----CcEEEEEcCCCccceeeeecCCCC---CCcHHHHHHHHHHHHhcCcEEEee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIV----GHSVTVFERNDRVGGLLQYGIPTM---KLSKEVVQRRVKLLAAEGIEFKTN 186 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~----G~~Vtvie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~gv~i~~~ 186 (276)
+.|||+|++ |+.+|..|++. +++||||++++++. +.+..++.+ ...+++.....+++++.||+++.+
T Consensus 6 IVIVG~G~A-----G~~aa~~L~~~~~~~~~~Itvi~~e~~~~-Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g 79 (847)
T PRK14989 6 LAIIGNGMV-----GHRFIEDLLDKADAANFDITVFCEEPRIA-YDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVG 79 (847)
T ss_pred EEEECCCHH-----HHHHHHHHHhhCCCCCCeEEEEECCCCCc-ccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcC
Confidence 345999999 99999998753 57999999998764 333222221 112233333456678889999999
Q ss_pred eeec-ccc------chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEE
Q psy12810 187 INVG-KDI------AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIV 259 (276)
Q Consensus 187 ~~v~-~~~------~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvV 259 (276)
+.+. .+. ..+...++||+||+|||++ |+.|++||.+.++++...++.+ ...+... ...+++++|
T Consensus 80 ~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~-p~~p~ipG~~~~~v~~~rt~~d-~~~l~~~-------~~~~k~vvV 150 (847)
T PRK14989 80 ERAITINRQEKVIHSSAGRTVFYDKLIMATGSY-PWIPPIKGSETQDCFVYRTIED-LNAIEAC-------ARRSKRGAV 150 (847)
T ss_pred CEEEEEeCCCcEEEECCCcEEECCEEEECCCCC-cCCCCCCCCCCCCeEEECCHHH-HHHHHHH-------HhcCCeEEE
Confidence 7654 221 1122458999999999998 9999999998888765433222 2211110 146789999
Q ss_pred EcCChHHHHHHHHhhc
Q psy12810 260 IGGGDTGCDCIATSLR 275 (276)
Q Consensus 260 IGgG~~G~E~A~~~~r 275 (276)
||||++|+|+|..+.+
T Consensus 151 IGgG~iGlE~A~~L~~ 166 (847)
T PRK14989 151 VGGGLLGLEAAGALKN 166 (847)
T ss_pred ECCCHHHHHHHHHHHH
Confidence 9999999999998865
No 65
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.52 E-value=1.5e-13 Score=130.45 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=56.6
Q ss_pred CcEEEeeeeeccc-----cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCC
Q psy12810 180 GIEFKTNINVGKD-----IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKD 254 (276)
Q Consensus 180 gv~i~~~~~v~~~-----~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (276)
++++..+.....+ +..+..++.||+||||||++ |..|++++.+..+++++.+.+.. . ..+
T Consensus 248 ~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~-P~~P~~~~~~~~~V~ts~d~~~l-~-------------~lp 312 (659)
T PTZ00153 248 HVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGST-PNIPDNIEVDQKSVFTSDTAVKL-E-------------GLQ 312 (659)
T ss_pred ceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCC-CCCCCCCCCCCCcEEehHHhhhh-h-------------hcC
Confidence 3777776543211 11122368999999999998 88887666666678776543321 1 347
Q ss_pred CeEEEEcCChHHHHHHHHhhc
Q psy12810 255 KNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 255 k~vvVIGgG~~G~E~A~~~~r 275 (276)
++++|||||++|+|+|..+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~ 333 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA 333 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh
Confidence 899999999999999987654
No 66
>PRK13748 putative mercuric reductase; Provisional
Probab=99.52 E-value=5.9e-14 Score=132.46 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=93.8
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee--------------------------cCCCC--C
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY--------------------------GIPTM--K 163 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~--------------------------~~~~~--~ 163 (276)
+.+.|||+||+ |+.+|..+++.|.+|+|||+. .+||.|.+ +++.. .
T Consensus 99 ~DvvVIG~Gpa-----G~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (561)
T PRK13748 99 LHVAVIGSGGA-----AMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 172 (561)
T ss_pred CCEEEECcCHH-----HHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCc
Confidence 34445999999 999999999999999999987 67775521 11100 0
Q ss_pred Cc-HHHHHH------------HHHHHHhc-CcEEEeeeeeccc-----c---chhhhhcccCEEEEcCCCCCCCCCCCCC
Q psy12810 164 LS-KEVVQR------------RVKLLAAE-GIEFKTNINVGKD-----I---AAKELYEEFDALLLCTGATWPRDLPIPG 221 (276)
Q Consensus 164 ~~-~~~~~~------------~~~~l~~~-gv~i~~~~~v~~~-----~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g 221 (276)
.+ +.+.++ ....+.+. +|+++.+.....+ + +++...+.||+||+|||++ |+.|++||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~-p~~p~i~g 251 (561)
T PRK13748 173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGAS-PAVPPIPG 251 (561)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCC-CCCCCCCC
Confidence 11 112111 11223344 7888877543211 1 1222368999999999998 99999998
Q ss_pred cCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 222 RQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 222 ~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+...+++..+.+.. ...+++++|||+|++|+|+|..+.+
T Consensus 252 ~~~~~~~~~~~~~~~--------------~~~~~~vvViGgG~ig~E~A~~l~~ 291 (561)
T PRK13748 252 LKETPYWTSTEALVS--------------DTIPERLAVIGSSVVALELAQAFAR 291 (561)
T ss_pred CCccceEccHHHhhc--------------ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 764434433222210 1456899999999999999998765
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.52 E-value=5.4e-14 Score=129.60 Aligned_cols=67 Identities=42% Similarity=0.672 Sum_probs=62.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 110 (276)
+|+||+||.. |+++|++|+|||+.+.+||++++++|.++.+.++.++..++++++|+++++|+.+++
T Consensus 150 GpaGl~aA~~-l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 216 (467)
T TIGR01318 150 GPAGLACADI-LARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR 216 (467)
T ss_pred CHHHHHHHHH-HHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence 7999999999 899999999999999999999999999999999999999999999999999876643
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.52 E-value=7.7e-14 Score=133.21 Aligned_cols=68 Identities=37% Similarity=0.647 Sum_probs=63.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~ 111 (276)
+||||+||.. |+++||+|+|||+.+.+||+++||+|+++++..++++..+.++++||++++++.++.+
T Consensus 319 GpaGl~aA~~-L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 319 GPAGLGCADI-LARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CHHHHHHHHH-HHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 6999999999 8999999999999999999999999999999999999999999999999999876543
No 69
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.52 E-value=6.5e-14 Score=139.36 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=107.6
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCC--CCcHHHHHHHHHHHHhc-CcEEEeeeee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTM--KLSKEVVQRRVKLLAAE-GIEFKTNINV 189 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~l~~~-gv~i~~~~~v 189 (276)
.+.|||+||+ |+++|..+++.|++|+|+|+.+.+||.+.+..... ....++...+.+.+... ++++++++.|
T Consensus 165 dVvIIGaGPA-----GLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 165 DVLVVGAGPA-----GLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred CEEEECCCHH-----HHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 3445999999 99999999999999999999999998776422111 12234555566667666 5999988765
Q ss_pred ccc-----------c--------ch----hhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCC
Q psy12810 190 GKD-----------I--------AA----KELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNEN 246 (276)
Q Consensus 190 ~~~-----------~--------~~----~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~ 246 (276)
... . .+ ....+.+|.||||||+. ++.+++||.+.++|+++..........
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~-~r~~pipG~~~pgV~~~~~~~~~l~~~------ 312 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAH-ERPLVFANNDRPGVMLAGAARTYLNRY------ 312 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCC-CcCCCCCCCCCCCcEEchHHHHHHHhh------
Confidence 310 0 00 01147899999999998 999999999999998865433222111
Q ss_pred CCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 247 VSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 247 ~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
....+++|+|||+|++|+|+|..+.+
T Consensus 313 ---~~~~gk~VvViG~G~~g~e~A~~L~~ 338 (985)
T TIGR01372 313 ---GVAPGKRIVVATNNDSAYRAAADLLA 338 (985)
T ss_pred ---CcCCCCeEEEECCCHHHHHHHHHHHH
Confidence 02468999999999999999988764
No 70
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.51 E-value=1.4e-13 Score=127.27 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHhcCcEEEeeeeeccc-----c---chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcC
Q psy12810 172 RVKLLAAEGIEFKTNINVGKD-----I---AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMG 243 (276)
Q Consensus 172 ~~~~l~~~gv~i~~~~~v~~~-----~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~ 243 (276)
....++..||+++.+.....+ + +++...+.||+||+|||++ |+.|++||.+.. .+++.+++..
T Consensus 106 ~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~-p~~p~ipG~~~~-~~~~~~~~~~------- 176 (484)
T TIGR01438 106 YRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGER-PRYPGIPGAKEL-CITSDDLFSL------- 176 (484)
T ss_pred HHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCC-CCCCCCCCccce-eecHHHhhcc-------
Confidence 344567789998887653211 1 1223468999999999998 999999986432 2333222211
Q ss_pred CCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 244 NENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 244 ~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||||++|+|+|..+.+
T Consensus 177 -------~~~~~~vvIIGgG~iG~E~A~~l~~ 201 (484)
T TIGR01438 177 -------PYCPGKTLVVGASYVALECAGFLAG 201 (484)
T ss_pred -------cccCCCEEEECCCHHHHHHHHHHHH
Confidence 1346789999999999999998865
No 71
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.51 E-value=7.1e-14 Score=133.62 Aligned_cols=65 Identities=34% Similarity=0.580 Sum_probs=61.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 108 (276)
+||||+||+. |+++||+|+|||+++.+||++++++|.++.+..+.++..+.+.++|+++++++.+
T Consensus 202 GpAGl~aA~~-La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v 266 (652)
T PRK12814 202 GPAGLTAAYY-LLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF 266 (652)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence 7999999999 8999999999999999999999999999999999999999999999999988754
No 72
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.51 E-value=5.1e-14 Score=137.43 Aligned_cols=65 Identities=29% Similarity=0.515 Sum_probs=61.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 108 (276)
+||||+||+. |+++||+|+|||+.+.+||++++++|.++.+.+.+++..+++++.||++++++.+
T Consensus 548 GPAGLsAA~~-Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V 612 (1019)
T PRK09853 548 GPAGLAAAYF-LARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP 612 (1019)
T ss_pred CHHHHHHHHH-HHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence 7999999999 8999999999999999999999999999999999999999999999999988754
No 73
>PRK06116 glutathione reductase; Validated
Probab=99.51 E-value=3.5e-14 Score=130.51 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=93.2
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-eec-CCC------------------------C--CC
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-QYG-IPT------------------------M--KL 164 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~~~-~~~------------------------~--~~ 164 (276)
.+.|||+||+ |+++|..+++.|++|+|||+. .+||.+ +.+ +|. . ..
T Consensus 6 DvvVIG~Gpa-----G~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 6 DLIVIGGGSG-----GIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CEEEECCCHH-----HHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 4445999999 999999999999999999986 577643 111 111 0 00
Q ss_pred c-HHH-----------HHHHHHHHHhcCcEEEeeeeeccc---cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeee
Q psy12810 165 S-KEV-----------VQRRVKLLAAEGIEFKTNINVGKD---IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYF 229 (276)
Q Consensus 165 ~-~~~-----------~~~~~~~l~~~gv~i~~~~~v~~~---~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~ 229 (276)
+ ..+ .....+.+.+.||+++.++....+ +..+...+.||+||+|||++ |+.|++||.+. +++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~-p~~p~i~g~~~--~~~ 156 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGR-PSIPDIPGAEY--GIT 156 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCC-CCCCCCCCcce--eEc
Confidence 0 111 111233456679999998743221 11122358999999999998 99999988642 333
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 230 AMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+.+++.. ...+++++|||+|++|+|+|..+.+
T Consensus 157 ~~~~~~~--------------~~~~~~vvViGgG~~g~E~A~~l~~ 188 (450)
T PRK06116 157 SDGFFAL--------------EELPKRVAVVGAGYIAVEFAGVLNG 188 (450)
T ss_pred hhHhhCc--------------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 3222210 1356899999999999999988764
No 74
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.51 E-value=3.4e-14 Score=132.53 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=100.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee--cCCC-----CCCcHHHHHHHHHHHHhcCcEEE
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY--GIPT-----MKLSKEVVQRRVKLLAAEGIEFK 184 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~--~~~~-----~~~~~~~~~~~~~~l~~~gv~i~ 184 (276)
..+.|||+||+ |+++|..+++.|++|+|++. .+||.+.. +++. .....++...+.+.+++.|++++
T Consensus 213 ~dVvIIGgGpA-----Gl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 213 YDVLVVGGGPA-----GAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred CCEEEECCCHH-----HHHHHHHHHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 33446999999 99999999999999999974 46765532 1111 12345677778888888999999
Q ss_pred eeeeecc-c-------cc-hhhhhcccCEEEEcCCCCCCCCCCCCCcC---CCCeeehHHHHHHHHHhhcCCCCCCCCCC
Q psy12810 185 TNINVGK-D-------IA-AKELYEEFDALLLCTGATWPRDLPIPGRQ---LSGIYFAMSFLESWQKKQMGNENVSPISA 252 (276)
Q Consensus 185 ~~~~v~~-~-------~~-~~~~~~~~D~vVlAtG~~~p~~~~i~g~~---~~gv~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (276)
+++.+.. + +. .+...+.||.+|+|||+. |+.+++||.+ ..++++... .+. ...
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~-~~~~~ipG~~~~~~~~v~~~~~-~~~-------------~~~ 350 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR-WRKLGVPGEKEYIGKGVAYCPH-CDG-------------PFF 350 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC-cCCCCCCCHHHcCCCeEEEeec-cCh-------------hhc
Confidence 9876641 1 11 122358899999999998 8888888853 133443211 110 024
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+++|+|||||++|+|+|..+.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~ 373 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAG 373 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHh
Confidence 68999999999999999988764
No 75
>PTZ00058 glutathione reductase; Provisional
Probab=99.51 E-value=5.5e-14 Score=131.54 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=95.5
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcccee-eeec-CCC-----------------------C-C
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL-LQYG-IPT-----------------------M-K 163 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~-~~~~-~~~-----------------------~-~ 163 (276)
.++.+.|||+||+ |..+|..+++.|.+|+|||+. .+||. +++| +|. . .
T Consensus 47 ~~yDvvVIG~G~a-----G~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~ 120 (561)
T PTZ00058 47 MVYDLIVIGGGSG-----GMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFS 120 (561)
T ss_pred ccccEEEECcCHH-----HHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCc
Confidence 3444556999999 999999999999999999986 46663 2222 111 0 0
Q ss_pred Cc-HH-------H----HHHHHHHHHhcCcEEEeeeeeccc-------------------------c-------chhhhh
Q psy12810 164 LS-KE-------V----VQRRVKLLAAEGIEFKTNINVGKD-------------------------I-------AAKELY 199 (276)
Q Consensus 164 ~~-~~-------~----~~~~~~~l~~~gv~i~~~~~v~~~-------------------------~-------~~~~~~ 199 (276)
.+ +. + .+...+.+++.||+++.++....+ + ..+...
T Consensus 121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 11 11 1 112234456789999988752111 0 012235
Q ss_pred cccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 200 EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 200 ~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+.||+||+|||++ |+.|++||.+ .++++.+++. ...+++++|||||++|+|+|..+.+
T Consensus 201 i~ad~lVIATGS~-P~~P~IpG~~--~v~ts~~~~~---------------l~~pk~VvIIGgG~iGlE~A~~l~~ 258 (561)
T PTZ00058 201 IEGKNILIAVGNK-PIFPDVKGKE--FTISSDDFFK---------------IKEAKRIGIAGSGYIAVELINVVNR 258 (561)
T ss_pred EECCEEEEecCCC-CCCCCCCCce--eEEEHHHHhh---------------ccCCCEEEEECCcHHHHHHHHHHHH
Confidence 8999999999998 9999999864 2455433322 1237999999999999999998765
No 76
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.51 E-value=7e-14 Score=128.73 Aligned_cols=159 Identities=32% Similarity=0.435 Sum_probs=112.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccch---------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA--------- 113 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~--------- 113 (276)
+||||+||.. ++++||+|+|||+.+.+||++.+++|.++.+.++..+..+++++.||++++++.++.++.
T Consensus 149 GpaGl~aA~~-l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~~d 227 (457)
T PRK11749 149 GPAGLTAAHR-LARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRAGYD 227 (457)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCccCHHHHHhhCC
Confidence 6999999999 899999999999999999999999999988999999999999999999998865432211
Q ss_pred --hhhccCC-CCCC----------------------------------------CCCCCCcchhhhhCCc-EEEEEcCCC
Q psy12810 114 --AKVTNHT-PQSD----------------------------------------NQTKHCPPLIVNIVGH-SVTVFERND 149 (276)
Q Consensus 114 --v~iiG~g-p~~~----------------------------------------g~~Gl~~A~~l~~~G~-~Vtvie~~~ 149 (276)
+..+|+. +..+ |.+|+++|..|.+.|. +|+++++.+
T Consensus 228 ~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 228 AVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred EEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 1124442 1111 3346666666667776 677776654
Q ss_pred ccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c------c--------------------chhhhhc
Q psy12810 150 RVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D------I--------------------AAKELYE 200 (276)
Q Consensus 150 ~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~------~--------------------~~~~~~~ 200 (276)
.. .+ +... ...+.+++.||++++++.+.. + + +++..++
T Consensus 308 ~~------~~---~~~~----~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i 374 (457)
T PRK11749 308 RE------EM---PASE----EEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTL 374 (457)
T ss_pred cc------cC---CCCH----HHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEE
Confidence 21 01 1111 234567788999998876431 0 0 1123468
Q ss_pred ccCEEEEcCCCCCCCC
Q psy12810 201 EFDALLLCTGATWPRD 216 (276)
Q Consensus 201 ~~D~vVlAtG~~~p~~ 216 (276)
++|.||+|+|.. |+.
T Consensus 375 ~~D~vi~a~G~~-p~~ 389 (457)
T PRK11749 375 PADLVIKAIGQT-PNP 389 (457)
T ss_pred ECCEEEECccCC-CCc
Confidence 899999999998 774
No 77
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.51 E-value=1.1e-13 Score=127.75 Aligned_cols=165 Identities=24% Similarity=0.298 Sum_probs=110.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC-CCC--------------------------CCC------HHHH
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI-PTM--------------------------KLS------KEVV 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~-~~~--------------------------~~~------~~~~ 88 (276)
+|||++||.. |+++|++|+|+||.. +||+|. +|+ |.. ++. .++.
T Consensus 9 GpaG~~aA~~-aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 86 (463)
T TIGR02053 9 GAAAFAAAIK-AAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVV 86 (463)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHHHHHHHH
Confidence 6999999999 999999999999975 999984 343 310 111 0111
Q ss_pred HH-----HHHHHHhCCCeEEecccc----------C-c-----cchhhhccCCCCCC-----------------------
Q psy12810 89 QR-----RVKLLAAEGIEFKTNINV----------G-K-----DIAAKVTNHTPQSD----------------------- 124 (276)
Q Consensus 89 ~~-----~~~~l~~~gv~~~~~~~v----------~-~-----~v~v~iiG~gp~~~----------------------- 124 (276)
.. +...+++.||++..+... + . +..+..+|+.|..|
T Consensus 87 ~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~ 166 (463)
T TIGR02053 87 EELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIP 166 (463)
T ss_pred HHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhhhCcccCC
Confidence 11 224567789998766321 0 0 11111234433211
Q ss_pred --------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c-
Q psy12810 125 --------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D- 192 (276)
Q Consensus 125 --------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~- 192 (276)
|.+|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+.. +
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---~------~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---P------REEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---C------ccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 5569999999999999999999988642 1 24566777778888899999999986641 1
Q ss_pred ------cc--hhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 193 ------IA--AKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 193 ------~~--~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
.. ++..++++|.||+|+|.. |+..++
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~-p~~~~l 271 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRR-PNTDGL 271 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCC-cCCCCC
Confidence 01 122468899999999998 877644
No 78
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.51 E-value=5.4e-14 Score=129.53 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-c-------c--c
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D-------I--A 194 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~--~ 194 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+.. + . +
T Consensus 179 G~iG~E~A~~l~~~g~~Vtli~~~~~ll---~------~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~ 249 (458)
T PRK06912 179 GVIGCEFASIYSRLGTKVTIVEMAPQLL---P------GEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYE 249 (458)
T ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCcC---c------cccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC
Confidence 5669999999999999999999988642 1 24566777788889999999999987641 0 1 1
Q ss_pred hhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 195 AKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 195 ~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
++..++++|.||+|+|.. |+...+
T Consensus 250 g~~~~i~~D~vivA~G~~-p~~~~l 273 (458)
T PRK06912 250 GSIQEVNAEFVLVSVGRK-PRVQQL 273 (458)
T ss_pred CceEEEEeCEEEEecCCc-cCCCCC
Confidence 122358899999999998 886543
No 79
>PLN02507 glutathione reductase
Probab=99.50 E-value=2.3e-13 Score=126.43 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=58.8
Q ss_pred HHHHHHhcCcEEEeeeeeccc-----c---chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcC
Q psy12810 172 RVKLLAAEGIEFKTNINVGKD-----I---AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMG 243 (276)
Q Consensus 172 ~~~~l~~~gv~i~~~~~v~~~-----~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~ 243 (276)
....+...||+++.+.....+ + +++...+.||+||+|||++ |+.|++||.+. ..++.+.+. .
T Consensus 130 ~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~-p~~p~ipG~~~--~~~~~~~~~----l--- 199 (499)
T PLN02507 130 YKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR-AQRPNIPGKEL--AITSDEALS----L--- 199 (499)
T ss_pred HHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC-CCCCCCCCccc--eechHHhhh----h---
Confidence 344566789999887532211 1 2222357899999999998 99899988642 233222221 1
Q ss_pred CCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 244 NENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 244 ~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...+++++|||||++|+|+|..+.+
T Consensus 200 -------~~~~k~vvVIGgG~ig~E~A~~l~~ 224 (499)
T PLN02507 200 -------EELPKRAVVLGGGYIAVEFASIWRG 224 (499)
T ss_pred -------hhcCCeEEEECCcHHHHHHHHHHHH
Confidence 1346899999999999999988764
No 80
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.50 E-value=5e-14 Score=132.49 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=98.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec--C---CCCC--CcHHHHHHHHHHHHhcCcEEEe
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG--I---PTMK--LSKEVVQRRVKLLAAEGIEFKT 185 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~--~---~~~~--~~~~~~~~~~~~l~~~gv~i~~ 185 (276)
.+.|||+||+ |+++|..|++.|++|+|||+. .+||.+... + |... ...++...+.+.+.+.|++++.
T Consensus 6 DVvIIGgGpA-----GL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 6 DLIIIGGGPA-----GLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred cEEEECCCHH-----HHHHHHHHHHCCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 3445999999 999999999999999999986 567665421 1 2211 2346677777778888999864
Q ss_pred eeeeccc-------cchhhhhcccCEEEEcCCCCCCCCCCCCCcC---CCCeeehHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy12810 186 NINVGKD-------IAAKELYEEFDALLLCTGATWPRDLPIPGRQ---LSGIYFAMSFLESWQKKQMGNENVSPISAKDK 255 (276)
Q Consensus 186 ~~~v~~~-------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~---~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k 255 (276)
......+ +......+.+|.||+|||++ |+.+++||.+ ..+++++.. .+. ....++
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~-p~~~~ipG~~~~~~~~v~~~~~-~~~-------------~~~~g~ 144 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARGDYKTLAVLIATGAS-PRKLGFPGEEEFTGRGVAYCAT-CDG-------------EFFTGM 144 (555)
T ss_pred cEEEEEEecCCEEEEEecCCEEEEeEEEECCCCc-cCCCCCCCHHHhCCceEEEEee-cCh-------------hhcCCC
Confidence 3322211 11112247789999999998 9999999864 234443211 111 025789
Q ss_pred eEEEEcCChHHHHHHHHhhc
Q psy12810 256 NVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 256 ~vvVIGgG~~G~E~A~~~~r 275 (276)
+++|||||++|+|+|..+.+
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~ 164 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTR 164 (555)
T ss_pred EEEEECCCHHHHHHHHHHHc
Confidence 99999999999999988765
No 81
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.50 E-value=6.7e-14 Score=138.89 Aligned_cols=68 Identities=37% Similarity=0.588 Sum_probs=63.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~ 111 (276)
+||||+||.. |+++||+|+|||+.+.+||++++|+|.++.+.+++++..++++++||++++|+.++++
T Consensus 439 GPAGLsaA~~-La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~ 506 (1006)
T PRK12775 439 GPAGLAAAAD-LVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKT 506 (1006)
T ss_pred CHHHHHHHHH-HHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCc
Confidence 6999999999 8999999999999999999999999999999999999999999999999999766543
No 82
>PRK14727 putative mercuric reductase; Provisional
Probab=99.49 E-value=1.3e-13 Score=127.55 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=94.5
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee-c-CCC-----------------------C--CC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY-G-IPT-----------------------M--KL 164 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~-~-~~~-----------------------~--~~ 164 (276)
..+.+||+||+ |+.+|..|++.|.+|+++|+.+.+||.|.. + +|. . ..
T Consensus 17 ~dvvvIG~G~a-----G~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 17 LHVAIIGSGSA-----AFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CcEEEECCCHH-----HHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 33445999999 999999999999999999998888887632 1 111 0 11
Q ss_pred cHH-HH-------HH-----HHHHHHhc-CcEEEeeeeec-------ccc-chhhhhcccCEEEEcCCCCCCCCCCCCCc
Q psy12810 165 SKE-VV-------QR-----RVKLLAAE-GIEFKTNINVG-------KDI-AAKELYEEFDALLLCTGATWPRDLPIPGR 222 (276)
Q Consensus 165 ~~~-~~-------~~-----~~~~l~~~-gv~i~~~~~v~-------~~~-~~~~~~~~~D~vVlAtG~~~p~~~~i~g~ 222 (276)
+.. +. .. ....++.. +|+++.+.... +.. +++..++.||+||+|||++ |+.|++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~p~i~G~ 170 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGST-PTIPPIPGL 170 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCC-CCCCCCCCc
Confidence 111 11 11 11223333 78887765322 111 1222468999999999998 999999987
Q ss_pred CCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 223 QLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 223 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+...+++..+.+.. ...+++++|||+|++|+|+|..+.+
T Consensus 171 ~~~~~~~~~~~l~~--------------~~~~k~vvVIGgG~iG~E~A~~l~~ 209 (479)
T PRK14727 171 MDTPYWTSTEALFS--------------DELPASLTVIGSSVVAAEIAQAYAR 209 (479)
T ss_pred CccceecchHHhcc--------------ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 54433432222110 1346899999999999999988764
No 83
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.49 E-value=7.1e-14 Score=130.51 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=101.6
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee--cCCC-----CCCcHHHHHHHHHHHHhcCcEEE
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY--GIPT-----MKLSKEVVQRRVKLLAAEGIEFK 184 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~--~~~~-----~~~~~~~~~~~~~~l~~~gv~i~ 184 (276)
..+.|||+||+ |+++|.++++.|++|+|++.. +||.+.. .++. .....++...+.+.+++.|++++
T Consensus 212 ~dvvIIGgGpa-----Gl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 212 YDVLVVGGGPA-----GAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCEEEECCCHH-----HHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34556999999 999999999999999999753 6776641 2221 12345778888888899999999
Q ss_pred eeeeecc-c-------c-chhhhhcccCEEEEcCCCCCCCCCCCCCcCC---CCeeehHHHHHHHHHhhcCCCCCCCCCC
Q psy12810 185 TNINVGK-D-------I-AAKELYEEFDALLLCTGATWPRDLPIPGRQL---SGIYFAMSFLESWQKKQMGNENVSPISA 252 (276)
Q Consensus 185 ~~~~v~~-~-------~-~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~---~gv~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (276)
+++.+.. + + ..+..++.+|.||+|||+. |+.+++||.+. .++++... .+. ...
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~-~r~~~ipG~~~~~~~~v~~~~~-~~~-------------~~~ 349 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR-WRNMNVPGEDEYRNKGVAYCPH-CDG-------------PLF 349 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC-cCCCCCCCHHHhcCceEEEeec-cCc-------------hhc
Confidence 8876641 1 0 1122357899999999998 88888888531 33433211 111 025
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+|+|+|||||++|+|+|..+..
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~ 372 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAG 372 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999988754
No 84
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.49 E-value=6.7e-14 Score=128.89 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=93.1
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee------------------------cCCC----CCCc-
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY------------------------GIPT----MKLS- 165 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~------------------------~~~~----~~~~- 165 (276)
.|||+||+ |+.+|..+++.|.+|+|||+.+..|.+++. +++. ...+
T Consensus 4 vVIG~G~a-----G~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 4 VVIGGGPA-----GYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred EEECCCHH-----HHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 45999999 999999999999999999987643322222 2210 0111
Q ss_pred HHHHH-----------HHHHHHHhcCcEEEeeeeeccc-----c--chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCe
Q psy12810 166 KEVVQ-----------RRVKLLAAEGIEFKTNINVGKD-----I--AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGI 227 (276)
Q Consensus 166 ~~~~~-----------~~~~~l~~~gv~i~~~~~v~~~-----~--~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv 227 (276)
..+.. .....++..+++++.+.....+ + ++...++.||+||||||++ |+.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~-p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSE-PTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCC-CCCCCCCCCCCCeE
Confidence 11111 1122345568998887653211 1 1222368899999999998 88888877665556
Q ss_pred eehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 228 YFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+++.+.+.. ...+++++|||||++|+|+|..+.+
T Consensus 158 ~~~~~~~~~--------------~~~~~~vvIIGgG~iG~E~A~~l~~ 191 (458)
T PRK06912 158 INSKHAMSL--------------PSIPSSLLIVGGGVIGCEFASIYSR 191 (458)
T ss_pred EcchHHhCc--------------cccCCcEEEECCCHHHHHHHHHHHH
Confidence 665433211 1346899999999999999988765
No 85
>PTZ00058 glutathione reductase; Provisional
Probab=99.48 E-value=2.4e-13 Score=127.25 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=65.2
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc-----------
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI----------- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~----------- 193 (276)
|++|+++|..|++.|.+|+++++.+++. + ..++++...+.+.+++.||++++++.+..-.
T Consensus 246 G~iGlE~A~~l~~~G~~Vtli~~~~~il---~------~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~ 316 (561)
T PTZ00058 246 GYIAVELINVVNRLGAESYIFARGNRLL---R------KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL 316 (561)
T ss_pred cHHHHHHHHHHHHcCCcEEEEEeccccc---c------cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE
Confidence 6789999999999999999999988642 1 3467777788888999999999998764100
Q ss_pred chhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 194 AAKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
.+...++++|.|++|+|.. |+...+
T Consensus 317 ~~~~~~i~aD~VlvA~Gr~-Pn~~~L 341 (561)
T PTZ00058 317 SDGRKYEHFDYVIYCVGRS-PNTEDL 341 (561)
T ss_pred CCCCEEEECCEEEECcCCC-CCcccc
Confidence 1112357899999999998 876543
No 86
>PRK14694 putative mercuric reductase; Provisional
Probab=99.48 E-value=2e-13 Score=126.14 Aligned_cols=143 Identities=21% Similarity=0.282 Sum_probs=93.5
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee--------------------------cCCCC--C
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY--------------------------GIPTM--K 163 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~--------------------------~~~~~--~ 163 (276)
+.+.|||+||+ |+.+|..|++.|++|+|||+. .+||.|.. +++.. .
T Consensus 7 ~dviVIGaG~a-----G~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 7 LHIAVIGSGGS-----AMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 34556999999 999999999999999999986 46664431 11100 0
Q ss_pred Cc-HHHHHHH------------HHHHHhc-CcEEEeeeeeccc-----c---chhhhhcccCEEEEcCCCCCCCCCCCCC
Q psy12810 164 LS-KEVVQRR------------VKLLAAE-GIEFKTNINVGKD-----I---AAKELYEEFDALLLCTGATWPRDLPIPG 221 (276)
Q Consensus 164 ~~-~~~~~~~------------~~~l~~~-gv~i~~~~~v~~~-----~---~~~~~~~~~D~vVlAtG~~~p~~~~i~g 221 (276)
.+ .++..+. ...+.+. +++++.+.....+ + +++..++.||+||+|||++ |+.|++||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~-p~~p~i~G 159 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGAR-PAEPPVPG 159 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCC-CCCCCCCC
Confidence 11 1222111 1113333 7888887643221 1 1222368999999999998 99999999
Q ss_pred cCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 222 RQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 222 ~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+...+++..+.+. + ...+++++|||+|++|+|+|..+.+
T Consensus 160 ~~~~~~~~~~~~~~----l----------~~~~~~vvViG~G~~G~E~A~~l~~ 199 (468)
T PRK14694 160 LAETPYLTSTSALE----L----------DHIPERLLVIGASVVALELAQAFAR 199 (468)
T ss_pred CCCCceEcchhhhc----h----------hcCCCeEEEECCCHHHHHHHHHHHH
Confidence 76544444322211 0 1346899999999999999988764
No 87
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.47 E-value=2.9e-13 Score=125.07 Aligned_cols=66 Identities=58% Similarity=0.920 Sum_probs=61.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 109 (276)
+||||+||.. |+++||+|+|||+.+.+||++++++|.++.+.++..+..+++.+.||++++++.++
T Consensus 152 GpAGl~aA~~-l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 152 GPAGLAAADQ-LARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 6999999999 89999999999999999999999999999999999888899999999999987653
No 88
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.47 E-value=1.1e-13 Score=124.45 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=94.4
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccceeeeecC----CCCCCcHHHHHH-HHHHHHhcCcEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVGGLLQYGI----PTMKLSKEVVQR-RVKLLAAEGIEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~gg~~~~~~----~~~~~~~~~~~~-~~~~l~~~gv~i~~~~ 187 (276)
.|||+|++ |+.+|..|++.+ .+||||++++... +.+..+ .......++... ..+++++.|++++.++
T Consensus 6 vIiG~G~A-----G~~~a~~lr~~~~~~~Itvi~~~~~~~-y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 79 (377)
T PRK04965 6 VIIGSGFA-----ARQLVKNIRKQDAHIPITLITADSGDE-YNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHT 79 (377)
T ss_pred EEECCcHH-----HHHHHHHHHhhCcCCCEEEEeCCCCCC-cCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCC
Confidence 34999999 999999998754 5699999887531 111111 111122333322 3345677899999887
Q ss_pred eec-ccc-----chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEc
Q psy12810 188 NVG-KDI-----AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIG 261 (276)
Q Consensus 188 ~v~-~~~-----~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIG 261 (276)
.|+ .+. ..+...+.||+||+|||+. |..|++||.+. +++..+ +.+....... ...+++++|||
T Consensus 80 ~V~~id~~~~~v~~~~~~~~yd~LVlATG~~-~~~p~i~G~~~--v~~~~~-~~~~~~~~~~-------~~~~~~vvViG 148 (377)
T PRK04965 80 WVTDIDAEAQVVKSQGNQWQYDKLVLATGAS-AFVPPIPGREL--MLTLNS-QQEYRAAETQ-------LRDAQRVLVVG 148 (377)
T ss_pred EEEEEECCCCEEEECCeEEeCCEEEECCCCC-CCCCCCCCCce--EEEECC-HHHHHHHHHH-------hhcCCeEEEEC
Confidence 664 221 1223368899999999998 99999998654 444333 2222221110 24678999999
Q ss_pred CChHHHHHHHHhhc
Q psy12810 262 GGDTGCDCIATSLR 275 (276)
Q Consensus 262 gG~~G~E~A~~~~r 275 (276)
+|++|+|+|..+.+
T Consensus 149 gG~~g~e~A~~L~~ 162 (377)
T PRK04965 149 GGLIGTELAMDLCR 162 (377)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 89
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-13 Score=118.91 Aligned_cols=141 Identities=22% Similarity=0.339 Sum_probs=99.6
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcE-EEEEcCCCccceeeee-----cCCCC---CCcHHHHHHHHHHHHhcCcEE
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHS-VTVFERNDRVGGLLQY-----GIPTM---KLSKEVVQRRVKLLAAEGIEF 183 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~-Vtvie~~~~~gg~~~~-----~~~~~---~~~~~~~~~~~~~l~~~gv~i 183 (276)
.+.|||+||+ |+++|.++++.+.+ ++|+|+ ...||++.. +.|.+ ...+++.+.+.++....++++
T Consensus 5 DviIIG~GPA-----Gl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~ 78 (305)
T COG0492 5 DVIIIGGGPA-----GLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEI 78 (305)
T ss_pred eEEEECCCHH-----HHHHHHHHHHcCCCcEEEEec-CCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEE
Confidence 3445999999 99999999999999 555554 445554432 22322 244678888888888889988
Q ss_pred Eeeeeeccc-------cchhhhhcccCEEEEcCCCCCCCCCCCCCcC---CCCeeehHHHHHHHHHhhcCCCCCCCCCCC
Q psy12810 184 KTNINVGKD-------IAAKELYEEFDALLLCTGATWPRDLPIPGRQ---LSGIYFAMSFLESWQKKQMGNENVSPISAK 253 (276)
Q Consensus 184 ~~~~~v~~~-------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~---~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (276)
........+ +.++..++.+++||+|||.. ++.+.+|+.+ .++|.++.. .+. .+.
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~-~~~~~~~~e~e~~g~gv~yc~~-cdg--------------~~~ 142 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAG-ARKLGVPGEEEFEGKGVSYCAT-CDG--------------FFK 142 (305)
T ss_pred EEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCc-ccCCCCCcchhhcCCceEEeee-cCc--------------ccc
Confidence 884433221 12233348899999999998 8888887533 256776543 332 278
Q ss_pred CCeEEEEcCChHHHHHHHHhhc
Q psy12810 254 DKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 254 ~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+|+|+|||||++++|-|..+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~ 164 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSK 164 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHH
Confidence 8999999999999999887754
No 90
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=3.1e-13 Score=123.93 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=107.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC-CCCceee-ecC-CCCC----------CCH------HHHHHH----HHHHHh-C
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND-RVGGLLQ-YGI-PTMK----------LSK------EVVQRR----VKLLAA-E 98 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~-~lGG~~~-~~~-~~~~----------~~~------~~~~~~----~~~l~~-~ 98 (276)
+|||++||+. |+++|++|+|+|+++ .+||+|. .|+ |... +.. ...+++ ...+.+ .
T Consensus 12 GpaGl~aA~~-la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (441)
T PRK08010 12 GKAGKTLAVT-LAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFHNLADMP 90 (441)
T ss_pred CHhHHHHHHH-HHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHHHHhhcC
Confidence 6999999999 899999999999975 4899994 454 3211 110 011111 123333 3
Q ss_pred CCeEEeccc---------c----Cc-----cchhhhccCCCCCC--------------------------------CCCC
Q psy12810 99 GIEFKTNIN---------V----GK-----DIAAKVTNHTPQSD--------------------------------NQTK 128 (276)
Q Consensus 99 gv~~~~~~~---------v----~~-----~v~v~iiG~gp~~~--------------------------------g~~G 128 (276)
|+++..+.. + +. +..+..+|+.|..+ |++|
T Consensus 91 gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g 170 (441)
T PRK08010 91 NIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIG 170 (441)
T ss_pred CcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEEEECCCHHH
Confidence 888765531 0 10 11111245433211 5668
Q ss_pred CCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchhhhhc
Q psy12810 129 HCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAKELYE 200 (276)
Q Consensus 129 l~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~~~~~ 200 (276)
+++|..|++.|.+|+++++.+.+. | ..++++...+.+.+++.||++++++.+..- ...+..++
T Consensus 171 ~E~A~~l~~~g~~Vtli~~~~~~l-------~--~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i 241 (441)
T PRK08010 171 VEFASMFANFGSKVTILEAASLFL-------P--REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQL 241 (441)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCC-------C--CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeE
Confidence 999999999999999999987642 1 235667777888899999999999876421 11122357
Q ss_pred ccCEEEEcCCCCCCCCC
Q psy12810 201 EFDALLLCTGATWPRDL 217 (276)
Q Consensus 201 ~~D~vVlAtG~~~p~~~ 217 (276)
.+|.|++|+|.+ |+..
T Consensus 242 ~~D~vl~a~G~~-pn~~ 257 (441)
T PRK08010 242 AVDALLIASGRQ-PATA 257 (441)
T ss_pred EeCEEEEeecCC-cCCC
Confidence 899999999998 8764
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.46 E-value=2.6e-13 Score=125.12 Aligned_cols=83 Identities=24% Similarity=0.228 Sum_probs=62.8
Q ss_pred CCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-c-------cc---
Q psy12810 126 QTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D-------IA--- 194 (276)
Q Consensus 126 ~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~~--- 194 (276)
.+|+++|..|++.|.+|+++++.+.+. | ..++++...+.+.+++.||++++++.+.. + ..
T Consensus 180 ~~g~e~A~~l~~~g~~Vtli~~~~~~l-------~--~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~ 250 (461)
T TIGR01350 180 VIGIEFASIFASLGSKVTVIEMLDRIL-------P--GEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKG 250 (461)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCC-------C--CCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeC
Confidence 348899999999999999999988642 1 24566777778888999999999987641 0 11
Q ss_pred hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 195 AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 195 ~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
++..++++|.||+|+|.. |+...
T Consensus 251 g~~~~i~~D~vi~a~G~~-p~~~~ 273 (461)
T TIGR01350 251 GETETLTGEKVLVAVGRK-PNTEG 273 (461)
T ss_pred CcEEEEEeCEEEEecCCc-ccCCC
Confidence 111368899999999998 87653
No 92
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.46 E-value=3.7e-13 Score=124.31 Aligned_cols=84 Identities=24% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc----------c-
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD----------I- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~----------~- 193 (276)
|++|+++|..|++.|.+|+++++.+++. | ..++++...+.+.+++.||++++++.+..- .
T Consensus 181 G~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------~--~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 251 (466)
T PRK07818 181 GAIGMEFAYVLKNYGVDVTIVEFLDRAL-------P--NEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVS 251 (466)
T ss_pred cHHHHHHHHHHHHcCCeEEEEecCCCcC-------C--ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEE
Confidence 5669999999999999999999887642 1 245667778888899999999999876410 0
Q ss_pred --chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 194 --AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 194 --~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+++..++++|.||+|+|.. |+...
T Consensus 252 ~~~g~~~~i~~D~vi~a~G~~-pn~~~ 277 (466)
T PRK07818 252 KKDGKAQELEADKVLQAIGFA-PRVEG 277 (466)
T ss_pred ecCCCeEEEEeCEEEECcCcc-cCCCC
Confidence 1112358899999999998 87654
No 93
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.45 E-value=2e-13 Score=125.09 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=92.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCccceeeeecCCCCCC----c-HHHHHHHHHH-HHhcCcEEEe
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRVGGLLQYGIPTMKL----S-KEVVQRRVKL-LAAEGIEFKT 185 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~gg~~~~~~~~~~~----~-~~~~~~~~~~-l~~~gv~i~~ 185 (276)
+.|||+|++ |+.+|..|+++ +.+|+|||+++.++ +.+.++|.+.. . .+......+. ..+.|++++.
T Consensus 4 VVIIGgG~a-----G~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 77 (438)
T PRK13512 4 IIVVGAVAG-----GATCASQIRRLDKESDIIIFEKDRDMS-FANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKT 77 (438)
T ss_pred EEEECCcHH-----HHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEe
Confidence 345999999 99999999876 67899999998765 44444444321 1 1222111223 3567999998
Q ss_pred eeeecc-cc-------c----hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCC
Q psy12810 186 NINVGK-DI-------A----AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAK 253 (276)
Q Consensus 186 ~~~v~~-~~-------~----~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (276)
+++|.. +. . ++..++.||+||+|||++ |+.|+++ ..++++..++.+......... ...
T Consensus 78 ~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~-~~~~~~~---~~~~~~~~~~~~~~~l~~~l~------~~~ 147 (438)
T PRK13512 78 YHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS-ANSLGFE---SDITFTLRNLEDTDAIDQFIK------ANQ 147 (438)
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC-CCCCCCC---CCCeEEecCHHHHHHHHHHHh------hcC
Confidence 877641 11 1 112246899999999998 8776654 345554433222211110000 135
Q ss_pred CCeEEEEcCChHHHHHHHHhhc
Q psy12810 254 DKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 254 ~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+++++|||||++|+|+|..+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~ 169 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE 169 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 94
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.44 E-value=3.2e-13 Score=124.56 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=91.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee-ec-CCCC-------------------------CCc-
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ-YG-IPTM-------------------------KLS- 165 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~-~~-~~~~-------------------------~~~- 165 (276)
+.|||+||+ |+.+|..|++.|++|+|||+ +.+||.+. ++ +|.. ..+
T Consensus 4 vvVIG~G~a-----Gl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 4 VVVIGGGPG-----GYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 345999999 99999999999999999999 77887543 11 1110 001
Q ss_pred HHHHH-----------HHHHHHHhcCcEEEeeeeeccc-----cchh--hhhcccCEEEEcCCCCCCCCCCCC-CcCCCC
Q psy12810 166 KEVVQ-----------RRVKLLAAEGIEFKTNINVGKD-----IAAK--ELYEEFDALLLCTGATWPRDLPIP-GRQLSG 226 (276)
Q Consensus 166 ~~~~~-----------~~~~~l~~~gv~i~~~~~v~~~-----~~~~--~~~~~~D~vVlAtG~~~p~~~~i~-g~~~~g 226 (276)
..+.. .....+++.|++++.++....+ +... ..++.||+||+|||++ |+.+++| +.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~-p~~~~~~~~~~~~~ 156 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSR-PRSLPGPFDFDGEV 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCC-CCCCCCCCCCCCce
Confidence 11111 1112345568888887654211 1111 1368899999999998 8887776 333233
Q ss_pred eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 227 IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 227 v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+++..+.+.. ...+++++|||||.+|+|+|..+.+
T Consensus 157 ~~~~~~~~~~--------------~~~~~~vvViGgG~~g~e~A~~l~~ 191 (461)
T TIGR01350 157 VITSTGALNL--------------KEVPESLVIIGGGVIGIEFASIFAS 191 (461)
T ss_pred EEcchHHhcc--------------ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 4443332210 1356899999999999999988765
No 95
>KOG0399|consensus
Probab=99.41 E-value=1.1e-12 Score=125.31 Aligned_cols=107 Identities=44% Similarity=0.603 Sum_probs=86.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchhh-------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK------- 115 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v~------- 115 (276)
+||||+||-. +.+.||.||||||++++||.+.||+|.++..+.++++.+..+.+.||+|.+|+++++.+...
T Consensus 1794 gpaglaaadq-lnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~~d 1872 (2142)
T KOG0399|consen 1794 GPAGLAAADQ-LNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDELKKEND 1872 (2142)
T ss_pred CchhhhHHHH-HhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHHHhhccC
Confidence 7999999999 89999999999999999999999999999999999999999999999999999998765432
Q ss_pred ----hccCCCCCC------CCCCCCcchhh------------------hhCCcEEEEEcCCCc
Q psy12810 116 ----VTNHTPQSD------NQTKHCPPLIV------------------NIVGHSVTVFERNDR 150 (276)
Q Consensus 116 ----iiG~gp~~~------g~~Gl~~A~~l------------------~~~G~~Vtvie~~~~ 150 (276)
.+|+.-..+ ..-|..+|..+ ...|++|+|+..++.
T Consensus 1873 aiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1873 AIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred eEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCc
Confidence 245533221 22355555432 346889999987764
No 96
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.41 E-value=6.7e-13 Score=118.72 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=93.4
Q ss_pred hhccCCCCCCCCCCCCcchhhhh---CCcEEEEEcCCCccceeeeecCCCC----CCcHHHHHHHHHHHHhcCcEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNI---VGHSVTVFERNDRVGGLLQYGIPTM----KLSKEVVQRRVKLLAAEGIEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~---~G~~Vtvie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~l~~~gv~i~~~~ 187 (276)
.|+|+|++ |+.+|..|++ .+.+|+|||+++..- +...+|.+ ....++.....+.+++.|++++.+.
T Consensus 3 vIiGgG~a-----G~~~a~~l~~~~~~~~~I~li~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~ 75 (364)
T TIGR03169 3 VLIGGGHT-----HALVLRRWAMKPLPGVRVTLINPSSTTP--YSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAE 75 (364)
T ss_pred EEECCcHH-----HHHHHHHhcCcCCCCCEEEEECCCCCCc--ccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEE
Confidence 35999999 9999999864 468999999988641 11112211 1123344445566777899999876
Q ss_pred eeccccc------hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeeh---HHHHHHHHHhhcCCCCCCCCCCCCCeEE
Q psy12810 188 NVGKDIA------AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFA---MSFLESWQKKQMGNENVSPISAKDKNVI 258 (276)
Q Consensus 188 ~v~~~~~------~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~---~~~l~~~~~~~~~~~~~~~~~~~~k~vv 258 (276)
....+.. .+..+++||+||+|||+. |+.+++||.. .+++.. .++....+....... ....+++++
T Consensus 76 v~~id~~~~~V~~~~g~~~~yD~LviAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vv 149 (364)
T TIGR03169 76 ATGIDPDRRKVLLANRPPLSYDVLSLDVGST-TPLSGVEGAA-DLAVPVKPIENFLARWEALLESAD----APPGTKRLA 149 (364)
T ss_pred EEEEecccCEEEECCCCcccccEEEEccCCC-CCCCCCCccc-ccccccCCHHHHHHHHHHHHHHHh----cCCCCceEE
Confidence 5443322 122358899999999998 9989998843 333322 222221111111000 013468999
Q ss_pred EEcCChHHHHHHHHhh
Q psy12810 259 VIGGGDTGCDCIATSL 274 (276)
Q Consensus 259 VIGgG~~G~E~A~~~~ 274 (276)
|||+|++|+|+|..+.
T Consensus 150 VvG~G~~g~E~A~~l~ 165 (364)
T TIGR03169 150 VVGGGAAGVEIALALR 165 (364)
T ss_pred EECCCHHHHHHHHHHH
Confidence 9999999999998875
No 97
>PRK13748 putative mercuric reductase; Provisional
Probab=99.41 E-value=1.5e-12 Score=123.06 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchh
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAK 196 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~ 196 (276)
|++|+++|..|++.|.+|+++++.+. ++ ..++++...+.+.+++.||++++++.+..- ...+
T Consensus 279 G~ig~E~A~~l~~~g~~Vtli~~~~~----l~------~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~ 348 (561)
T PRK13748 279 SVVALELAQAFARLGSKVTILARSTL----FF------REDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTG 348 (561)
T ss_pred CHHHHHHHHHHHHcCCEEEEEecCcc----cc------ccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEec
Confidence 56699999999999999999997542 21 246677778888899999999999876421 1111
Q ss_pred hhhcccCEEEEcCCCCCCCCCC
Q psy12810 197 ELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 197 ~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
..++++|.||+|+|.. |+...
T Consensus 349 ~~~i~~D~vi~a~G~~-pn~~~ 369 (561)
T PRK13748 349 HGELRADKLLVATGRA-PNTRS 369 (561)
T ss_pred CCeEEeCEEEEccCCC-cCCCC
Confidence 2358899999999998 88753
No 98
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.40 E-value=2.2e-12 Score=118.61 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=55.3
Q ss_pred HhcCcEEEeeeeeccc---cc-hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCC
Q psy12810 177 AAEGIEFKTNINVGKD---IA-AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252 (276)
Q Consensus 177 ~~~gv~i~~~~~v~~~---~~-~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (276)
++.||+++.++....+ +. .+..++.||+||+|||++ |..|+..+.+...+.+..++++. ..
T Consensus 103 ~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~-p~~p~~~~~~~~~~~~~~~~~~l--------------~~ 167 (452)
T TIGR03452 103 ETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSR-PYIPPAIADSGVRYHTNEDIMRL--------------PE 167 (452)
T ss_pred ccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCC-CCCCCCCCCCCCEEEcHHHHHhh--------------hh
Confidence 3478999888765321 11 122358899999999998 88776433322223343333221 13
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.+++++|||+|++|+|+|..+.+
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~ 190 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSA 190 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh
Confidence 47899999999999999988765
No 99
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.39 E-value=1.7e-12 Score=119.68 Aligned_cols=140 Identities=23% Similarity=0.243 Sum_probs=88.8
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee-------------------------cCCC--CCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY-------------------------GIPT--MKLS 165 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~-------------------------~~~~--~~~~ 165 (276)
.+.|||+||+ |+.+|..|++.|++|+|||+ +.+||.+.. +++. ...+
T Consensus 5 DvvIIG~G~a-----Gl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 5 DVIVIGAGPA-----GYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred cEEEECCCHH-----HHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 4455999999 99999999999999999999 667775531 1110 0111
Q ss_pred -HHHHHHH------------HHHHHhcCcEEEeeeeeccc---cchhhhhcccCEEEEcCCCCCCCCCCCCCcC---CCC
Q psy12810 166 -KEVVQRR------------VKLLAAEGIEFKTNINVGKD---IAAKELYEEFDALLLCTGATWPRDLPIPGRQ---LSG 226 (276)
Q Consensus 166 -~~~~~~~------------~~~l~~~gv~i~~~~~v~~~---~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~---~~g 226 (276)
+++.++. ...+...+++++.+.....+ +..+..++.||+||+|||++ .|++||.+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 2222221 12234557888766432111 11123468899999999985 34556643 334
Q ss_pred eeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 227 IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 227 v~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+++..+.++. ...+++++|||+|++|+|+|..+.+
T Consensus 156 ~~~~~~~~~~--------------~~~~k~v~VIGgG~~g~E~A~~l~~ 190 (460)
T PRK06292 156 LLTSDDAFEL--------------DKLPKSLAVIGGGVIGLELGQALSR 190 (460)
T ss_pred EECchHHhCc--------------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 5543332211 1457899999999999999988765
No 100
>PRK07846 mycothione reductase; Reviewed
Probab=99.39 E-value=1e-12 Score=120.79 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=89.7
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeeec-CCCC-------------------------CCc-
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQYG-IPTM-------------------------KLS- 165 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~~-~~~~-------------------------~~~- 165 (276)
+.+||+||+ |..+|.. ..|.+|++||+.. +|| ++++| +|.. ..+
T Consensus 4 ~vVIG~G~~-----g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 4 LIIIGTGSG-----NSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred EEEECCCHH-----HHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 345999999 9887755 4699999999865 554 33332 2210 111
Q ss_pred HHHH-------HHH-----HHH-HHhcCcEEEeeeeeccc---cch-hhhhcccCEEEEcCCCCCCCCCCCCCcCCCCee
Q psy12810 166 KEVV-------QRR-----VKL-LAAEGIEFKTNINVGKD---IAA-KELYEEFDALLLCTGATWPRDLPIPGRQLSGIY 228 (276)
Q Consensus 166 ~~~~-------~~~-----~~~-l~~~gv~i~~~~~v~~~---~~~-~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~ 228 (276)
+++. +.+ ... ++..||+++.++....+ +.. +...+.||+||+|||++ |+.|++||.+...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~-p~~p~i~g~~~~~~~ 154 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSR-PVIPPVIADSGVRYH 154 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCC-CCCCCCCCcCCccEE
Confidence 1111 111 112 45678888888754321 111 12358999999999998 999999986655555
Q ss_pred ehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 229 FAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+..++++. ...+++++|||||++|+|+|..+.+
T Consensus 155 ~~~~~~~l--------------~~~~~~vvIIGgG~iG~E~A~~l~~ 187 (451)
T PRK07846 155 TSDTIMRL--------------PELPESLVIVGGGFIAAEFAHVFSA 187 (451)
T ss_pred chHHHhhh--------------hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 54443221 1346899999999999999998765
No 101
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.39 E-value=1e-12 Score=121.32 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=84.6
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeeec-CCCCCC--cHHHHHHH----------------
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQYG-IPTMKL--SKEVVQRR---------------- 172 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~~-~~~~~~--~~~~~~~~---------------- 172 (276)
.+.|||+||+ |+.+|..+++.|++|+|||+.. +|| ..+.+ +|...+ ..++...+
T Consensus 6 DvvIIG~Gpa-----G~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 79 (466)
T PRK07818 6 DVVVLGAGPG-----GYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD 79 (466)
T ss_pred CEEEECCCHH-----HHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccC
Confidence 3445999999 9999999999999999999864 454 33332 221100 00000000
Q ss_pred -------------------HHHHHhcCcEEEeeeee-------ccc-cchhhhhcccCEEEEcCCCCCCCCCCCCCcCC-
Q psy12810 173 -------------------VKLLAAEGIEFKTNINV-------GKD-IAAKELYEEFDALLLCTGATWPRDLPIPGRQL- 224 (276)
Q Consensus 173 -------------------~~~l~~~gv~i~~~~~v-------~~~-~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~- 224 (276)
...++..+|+.+.+... ... .++...++.||+||+|||++ |+.+ ||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~~--pg~~~~ 156 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSS-TRLL--PGTSLS 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCC-CCCC--CCCCCC
Confidence 11122346766654321 111 11223468999999999998 7653 55542
Q ss_pred CCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 225 SGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 225 ~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
..+++..+.+.. ...+++++|||+|++|+|+|..+.+
T Consensus 157 ~~v~~~~~~~~~--------------~~~~~~vvVIGgG~ig~E~A~~l~~ 193 (466)
T PRK07818 157 ENVVTYEEQILS--------------RELPKSIVIAGAGAIGMEFAYVLKN 193 (466)
T ss_pred CcEEchHHHhcc--------------ccCCCeEEEECCcHHHHHHHHHHHH
Confidence 334443221110 1356899999999999999988765
No 102
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.39 E-value=4e-13 Score=122.22 Aligned_cols=71 Identities=48% Similarity=0.741 Sum_probs=67.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchh
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v 114 (276)
.|||++||.. |++.||+||+||+.+..||.+.||||.++.+++++++..+.|+++|++|++|.++++++..
T Consensus 132 GPAGl~~a~~-L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~ 202 (457)
T COG0493 132 GPAGLAAADD-LSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITL 202 (457)
T ss_pred CchHhhhHHH-HHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCH
Confidence 7999999999 8999999999999999999999999999999999999999999999999999988765554
No 103
>PRK14727 putative mercuric reductase; Provisional
Probab=99.38 E-value=2.7e-12 Score=118.88 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=62.1
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchh
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAK 196 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~ 196 (276)
|++|+++|..|++.|.+|+++++... +. ..++++...+.+.+++.||++++++.+..- ...+
T Consensus 197 G~iG~E~A~~l~~~G~~Vtlv~~~~~----l~------~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~ 266 (479)
T PRK14727 197 SVVAAEIAQAYARLGSRVTILARSTL----LF------REDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266 (479)
T ss_pred CHHHHHHHHHHHHcCCEEEEEEcCCC----CC------cchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEc
Confidence 55699999999999999999987432 21 345667777888899999999998876411 1112
Q ss_pred hhhcccCEEEEcCCCCCCCCCC
Q psy12810 197 ELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 197 ~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
..++++|.||+|+|.+ |+...
T Consensus 267 ~g~i~aD~VlvA~G~~-pn~~~ 287 (479)
T PRK14727 267 HGELRAEKLLISTGRH-ANTHD 287 (479)
T ss_pred CCeEEeCEEEEccCCC-CCccC
Confidence 2357899999999998 87654
No 104
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.38 E-value=3.8e-12 Score=118.33 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c-----cc-h
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D-----IA-A 195 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----~~-~ 195 (276)
|++|+++|..|++.|.+||++++. .+ ++ ..++++.+.+.+.+++.||++++++.+.. . .. .
T Consensus 191 G~iG~E~A~~l~~~G~~Vtli~~~-~~---l~------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~ 260 (499)
T PTZ00052 191 SYIGLETAGFLNELGFDVTVAVRS-IP---LR------GFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFS 260 (499)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEcC-cc---cc------cCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEEC
Confidence 556999999999999999999864 22 11 35677778888889999999999976531 0 00 1
Q ss_pred hhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
+..++++|.|++|+|.. |+...+
T Consensus 261 ~g~~i~~D~vl~a~G~~-pn~~~l 283 (499)
T PTZ00052 261 DGTTELFDTVLYATGRK-PDIKGL 283 (499)
T ss_pred CCCEEEcCEEEEeeCCC-CCcccc
Confidence 12347899999999998 886543
No 105
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.37 E-value=3.1e-12 Score=118.93 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=88.9
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC--------ccceee-eec-CCC-------------------C-
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND--------RVGGLL-QYG-IPT-------------------M- 162 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~--------~~gg~~-~~~-~~~-------------------~- 162 (276)
.+.|||+||+ |+.+|..+++.|++|+|||+.. .+||.. +++ +|. +
T Consensus 7 DviVIG~Gpa-----G~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 7 DLVVIGGGSG-----GMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CEEEECCCHH-----HHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 3445999999 9999999999999999999631 367642 221 121 0
Q ss_pred -----CCc-HHHHHHHH-----------HHHHhcCcEEEeeeeecc-----cc--chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 163 -----KLS-KEVVQRRV-----------KLLAAEGIEFKTNINVGK-----DI--AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 163 -----~~~-~~~~~~~~-----------~~l~~~gv~i~~~~~v~~-----~~--~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
..+ .++.++.. ..++..+|+++.+..... .+ .++...+.||+||||||+. |+.|+
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~-p~~p~ 160 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGR-PSIPE 160 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCC-CCCCC
Confidence 011 22222222 122335777776543211 11 1223468999999999998 88774
Q ss_pred -CCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 219 -IPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 219 -i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+||.+.. .+++.+++.. ...+++++|||||++|+|+|..+.+
T Consensus 161 ~i~G~~~~-~~~~~~~~~~--------------~~~~~~vvIIGgG~iG~E~A~~l~~ 203 (499)
T PTZ00052 161 DVPGAKEY-SITSDDIFSL--------------SKDPGKTLIVGASYIGLETAGFLNE 203 (499)
T ss_pred CCCCccce-eecHHHHhhh--------------hcCCCeEEEECCCHHHHHHHHHHHH
Confidence 8876432 2333332211 1346799999999999999988765
No 106
>PRK10262 thioredoxin reductase; Provisional
Probab=99.37 E-value=2.1e-12 Score=113.54 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=104.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC-----CCCCC---CHHHHHHHHHHHHhCCCeEEecc--cc----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI-----PTMKL---SKEVVQRRVKLLAAEGIEFKTNI--NV---- 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~-----~~~~~---~~~~~~~~~~~l~~~gv~~~~~~--~v---- 108 (276)
+||||+||.. |+++||+|++||+. .+||++.+.. |.... ...+.++..+.....++++..+. .+
T Consensus 15 GpaGl~aA~~-l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 92 (321)
T PRK10262 15 GPAGYTAAVY-AARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQN 92 (321)
T ss_pred CHHHHHHHHH-HHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecC
Confidence 6999999999 89999999999965 6899886542 32211 13345555666666666554421 00
Q ss_pred ---------C---ccchhhhccCCCCCC----------------------------------CCCCCCcchhhhhCCcEE
Q psy12810 109 ---------G---KDIAAKVTNHTPQSD----------------------------------NQTKHCPPLIVNIVGHSV 142 (276)
Q Consensus 109 ---------~---~~v~v~iiG~gp~~~----------------------------------g~~Gl~~A~~l~~~G~~V 142 (276)
+ .+..+..+|+.|..+ |.+|+++|..|++.|.+|
T Consensus 93 ~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~V 172 (321)
T PRK10262 93 RPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV 172 (321)
T ss_pred CeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEE
Confidence 0 011111234433211 456888899999999999
Q ss_pred EEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c------c--c-----hhhhhcccCEEE
Q psy12810 143 TVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D------I--A-----AKELYEEFDALL 206 (276)
Q Consensus 143 tvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~------~--~-----~~~~~~~~D~vV 206 (276)
+++++.+.+ ..+..+...+.+.+++.||++++++.+.. + + . ++..++++|.||
T Consensus 173 tlv~~~~~~-----------~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv 241 (321)
T PRK10262 173 HLIHRRDGF-----------RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 241 (321)
T ss_pred EEEEECCcc-----------CCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEE
Confidence 999987643 12344556677778889999999876541 1 0 0 112368899999
Q ss_pred EcCCCCCCCCC
Q psy12810 207 LCTGATWPRDL 217 (276)
Q Consensus 207 lAtG~~~p~~~ 217 (276)
+++|.. |+..
T Consensus 242 ~a~G~~-p~~~ 251 (321)
T PRK10262 242 VAIGHS-PNTA 251 (321)
T ss_pred EEeCCc-cChh
Confidence 999998 7765
No 107
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.35 E-value=4.3e-12 Score=117.44 Aligned_cols=144 Identities=20% Similarity=0.217 Sum_probs=88.8
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcC------CCccceeee-ec-CCC----------------------
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFER------NDRVGGLLQ-YG-IPT---------------------- 161 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~------~~~~gg~~~-~~-~~~---------------------- 161 (276)
+.+.|||+||+ |+.+|..+++.|.+|+|||+ ...+||.+. ++ +|.
T Consensus 5 ~DviIIG~G~a-----G~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 5 FDVVVIGAGPG-----GYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred eeEEEECCCHH-----HHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 34445999999 99999999999999999998 245566442 11 111
Q ss_pred --C--CCc-HHHH-----------HHHHHHHHhcCcEEEeeeeeccc---------cch-hhhhcccCEEEEcCCCCCCC
Q psy12810 162 --M--KLS-KEVV-----------QRRVKLLAAEGIEFKTNINVGKD---------IAA-KELYEEFDALLLCTGATWPR 215 (276)
Q Consensus 162 --~--~~~-~~~~-----------~~~~~~l~~~gv~i~~~~~v~~~---------~~~-~~~~~~~D~vVlAtG~~~p~ 215 (276)
. ..+ +++. ......++..+|+++.++....+ ... ...++.||+||+|||+. |+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~-p~ 158 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE-PR 158 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC-CC
Confidence 0 000 0111 11223345568988876643211 111 12368999999999998 76
Q ss_pred CCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 216 DLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 216 ~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.++..+.+...++++.+.+.. ...+++++|||+|++|+|+|..+.+
T Consensus 159 ~~p~~~~~~~~~~~~~~~~~~--------------~~~~~~vvVvGgG~~g~E~A~~l~~ 204 (475)
T PRK06327 159 HLPGVPFDNKIILDNTGALNF--------------TEVPKKLAVIGAGVIGLELGSVWRR 204 (475)
T ss_pred CCCCCCCCCceEECcHHHhcc--------------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 543323333344443322210 1357899999999999999988764
No 108
>PRK14694 putative mercuric reductase; Provisional
Probab=99.34 E-value=9.2e-12 Score=115.07 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=62.2
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-c-------cchh
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D-------IAAK 196 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~~~~ 196 (276)
|++|+++|..|++.|.+|+++++... ++ ..++++...+.+.+++.||++++++.+.. + ...+
T Consensus 187 G~~G~E~A~~l~~~g~~Vtlv~~~~~----l~------~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~ 256 (468)
T PRK14694 187 SVVALELAQAFARLGSRVTVLARSRV----LS------QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN 256 (468)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC----CC------CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC
Confidence 55699999999999999999986432 21 34667777888889999999999976642 1 1111
Q ss_pred hhhcccCEEEEcCCCCCCCCCC
Q psy12810 197 ELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 197 ~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
..++++|.||+|+|.+ |+...
T Consensus 257 ~~~i~~D~vi~a~G~~-pn~~~ 277 (468)
T PRK14694 257 AGTLRAEQLLVATGRT-PNTEN 277 (468)
T ss_pred CCEEEeCEEEEccCCC-CCcCC
Confidence 2358899999999998 87654
No 109
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.34 E-value=4.1e-12 Score=119.93 Aligned_cols=65 Identities=32% Similarity=0.630 Sum_probs=61.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 108 (276)
+|+||.||.. |++.|++|+|||+.+.+||.+++++|.++.+.++.+...+.++++|+++.+++.+
T Consensus 146 GpaGL~aA~~-l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 146 GPAGLSAAYH-LRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 6999999999 8999999999999999999999999999999999999889999999999988765
No 110
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.34 E-value=5.3e-12 Score=115.36 Aligned_cols=137 Identities=24% Similarity=0.335 Sum_probs=88.3
Q ss_pred cchhhhhC--CcEEEEEcCCCccceeeeecCCCCCC-----cHHHHHHHHH-HHHhcCcEEEeeeeecc-cc-------c
Q psy12810 131 PPLIVNIV--GHSVTVFERNDRVGGLLQYGIPTMKL-----SKEVVQRRVK-LLAAEGIEFKTNINVGK-DI-------A 194 (276)
Q Consensus 131 ~A~~l~~~--G~~Vtvie~~~~~gg~~~~~~~~~~~-----~~~~~~~~~~-~l~~~gv~i~~~~~v~~-~~-------~ 194 (276)
+|..|++. ..+|||||+++... +.++++|.+.. ..+...+..+ .+.+.|++++.++.|+. +. .
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVS-FANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCcee-EEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 57778775 46799999999764 44545554321 1222333233 34788999988877652 11 1
Q ss_pred --hhhhhcc--cCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHH
Q psy12810 195 --AKELYEE--FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCI 270 (276)
Q Consensus 195 --~~~~~~~--~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A 270 (276)
++...+. ||+||+|||++ |+.+++||.+..++++..+..+......... ...+++|+|||||++|+|+|
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~-p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~------~~~~~~vvViGgG~~g~e~A 153 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGAS-PIVPNIEGINLDIVFTLRNLEDTDAIKQYID------KNKVENVVIIGGGYIGIEMA 153 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCC-CCCCCCCCcCCCCEEEECCHHHHHHHHHHHh------hcCCCeEEEECCCHHHHHHH
Confidence 1122345 99999999998 9999999987666766544322211111000 14578999999999999999
Q ss_pred HHhhc
Q psy12810 271 ATSLR 275 (276)
Q Consensus 271 ~~~~r 275 (276)
..+.+
T Consensus 154 ~~l~~ 158 (427)
T TIGR03385 154 EALRE 158 (427)
T ss_pred HHHHh
Confidence 88764
No 111
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.34 E-value=9.1e-12 Score=115.29 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=64.4
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c-----c--c
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D-----I--A 194 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----~--~ 194 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+.. + . .
T Consensus 192 G~~g~E~A~~l~~~g~~Vtli~~~~~~l---~------~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~ 262 (475)
T PRK06327 192 GVIGLELGSVWRRLGAEVTILEALPAFL---A------AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYT 262 (475)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCccC---C------cCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEE
Confidence 5669999999999999999999988642 1 24567777788888899999999976641 0 0 1
Q ss_pred ---hhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 195 ---AKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 195 ---~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
++...+++|.|++|+|.. |+...+
T Consensus 263 ~~~g~~~~i~~D~vl~a~G~~-p~~~~l 289 (475)
T PRK06327 263 DADGEAQTLEVDKLIVSIGRV-PNTDGL 289 (475)
T ss_pred eCCCceeEEEcCEEEEccCCc-cCCCCC
Confidence 112468899999999998 887643
No 112
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.31 E-value=4.4e-12 Score=115.75 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=91.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCC----CCcHHHHHHHHHHHHhcCcEEEeeeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTM----KLSKEVVQRRVKLLAAEGIEFKTNINV 189 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~l~~~gv~i~~~~~v 189 (276)
++|+|+|.+ |+.+|..|.+.+++|||||+.++. .+...++.. ...+++...+.+.+...+++++.+...
T Consensus 13 vVIvGgG~a-----Gl~~a~~L~~~~~~ItlI~~~~~~--~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 13 VVVLGTGWA-----GAYFVRNLDPKKYNITVISPRNHM--LFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred EEEECCCHH-----HHHHHHHhCcCCCeEEEEcCCCCc--chhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 344999999 999999998778999999998864 222111111 112333334445566678888877544
Q ss_pred ccccc----------------hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHH---HHhh----cCCCC
Q psy12810 190 GKDIA----------------AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESW---QKKQ----MGNEN 246 (276)
Q Consensus 190 ~~~~~----------------~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~---~~~~----~~~~~ 246 (276)
..+.. .+..+++||+||+|||+. |+.+++||.+. .++....+.+.. +.+. .....
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~-~~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 163 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR-PNTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASLP 163 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc-cCCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 32210 123368999999999998 88889998653 222222211111 1110 00000
Q ss_pred CCC--CCCCCCeEEEEcCChHHHHHHHHhh
Q psy12810 247 VSP--ISAKDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 247 ~~~--~~~~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
..+ .....++++|||||++|+|+|.++.
T Consensus 164 ~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~ 193 (424)
T PTZ00318 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELA 193 (424)
T ss_pred CCChHHHhccCEEEEECCCHHHHHHHHHHH
Confidence 000 0012359999999999999998875
No 113
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.28 E-value=4.5e-12 Score=112.88 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=95.5
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccceeee---ecCCCCCC-cHHHHHHHHHHHHhcC-cEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVGGLLQ---YGIPTMKL-SKEVVQRRVKLLAAEG-IEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~gg~~~---~~~~~~~~-~~~~~~~~~~~l~~~g-v~i~~~~ 187 (276)
+|+|+|-+ |+.+|..|.+.- .+||+||+.++. ++. +....... ..++...+.+.++..+ ++|..++
T Consensus 7 VIlGgGfg-----Gl~~a~~l~~~~~~~~itLVd~~~~h--l~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~ 79 (405)
T COG1252 7 VILGGGFG-----GLSAAKRLARKLPDVEITLVDRRDYH--LFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE 79 (405)
T ss_pred EEECCcHH-----HHHHHHHhhhcCCCCcEEEEeCCCcc--ccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE
Confidence 34999999 999999998864 889999999864 222 11111122 2334444556666455 9999998
Q ss_pred eeccccch------hhhhcccCEEEEcCCCCCCCCCCCCCcCC--CCeeehHHHHHHHHHhhcCCCCCCCCCC--CCCeE
Q psy12810 188 NVGKDIAA------KELYEEFDALLLCTGATWPRDLPIPGRQL--SGIYFAMSFLESWQKKQMGNENVSPISA--KDKNV 257 (276)
Q Consensus 188 ~v~~~~~~------~~~~~~~D~vVlAtG~~~p~~~~i~g~~~--~gv~~~~~~l~~~~~~~~~~~~~~~~~~--~~k~v 257 (276)
....|... +...++||++|+|+|+. ++.+.+||... ..+.+..+.++-.+.+............ .-.++
T Consensus 80 V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~-~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti 158 (405)
T COG1252 80 VTDIDRDAKKVTLADLGEISYDYLVVALGSE-TNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTI 158 (405)
T ss_pred EEEEcccCCEEEeCCCccccccEEEEecCCc-CCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEE
Confidence 76544322 23568999999999999 99999999542 2233333332222222100000000001 12379
Q ss_pred EEEcCChHHHHHHHHhhc
Q psy12810 258 IVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 258 vVIGgG~~G~E~A~~~~r 275 (276)
+|+|||++|+|+|.++..
T Consensus 159 ~IvGgG~TGVElAgeL~~ 176 (405)
T COG1252 159 VIVGGGPTGVELAGELAE 176 (405)
T ss_pred EEECCChhHHHHHHHHHH
Confidence 999999999999998764
No 114
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.28 E-value=2.9e-11 Score=104.86 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=100.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeec-----CCCCC---CCHHHHHHHHHHHHhCCCeEEeccccC-----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYG-----IPTMK---LSKEVVQRRVKLLAAEGIEFKTNINVG----- 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~-----~~~~~---~~~~~~~~~~~~l~~~gv~~~~~~~v~----- 109 (276)
+||||+||.. ++++|++|+|||+++ +||.+... .|.+. ...++..+..+.+++.|+++++.....
T Consensus 9 G~aGl~aA~~-l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~ 86 (300)
T TIGR01292 9 GPAGLTAAIY-AARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSD 86 (300)
T ss_pred CHHHHHHHHH-HHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecC
Confidence 6999999999 899999999999986 88877542 35443 225677777788888899887632100
Q ss_pred ----------c----cchhhhccCCCCCC----------------------------------CCCCCCcchhhhhCCcE
Q psy12810 110 ----------K----DIAAKVTNHTPQSD----------------------------------NQTKHCPPLIVNIVGHS 141 (276)
Q Consensus 110 ----------~----~v~v~iiG~gp~~~----------------------------------g~~Gl~~A~~l~~~G~~ 141 (276)
. +..+..+|+.|..+ |..|+++|..|++.+.+
T Consensus 87 ~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~ 166 (300)
T TIGR01292 87 RPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKK 166 (300)
T ss_pred CeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCE
Confidence 0 00011123322211 22366667777777788
Q ss_pred EEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhc-CcEEEeeeeecc---c-------c----chhhhhcccCEEE
Q psy12810 142 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKTNINVGK---D-------I----AAKELYEEFDALL 206 (276)
Q Consensus 142 Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~---~-------~----~~~~~~~~~D~vV 206 (276)
|+++++.+.+ ...+ .+.+.+.+. |+++++++.+.. + . +++..++++|.||
T Consensus 167 V~~v~~~~~~-----------~~~~----~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 167 VTLVHRRDKF-----------RAEK----ILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred EEEEEeCccc-----------CcCH----HHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 8888776542 1122 344556666 999998876541 0 0 1223468899999
Q ss_pred EcCCCCCCCC
Q psy12810 207 LCTGATWPRD 216 (276)
Q Consensus 207 lAtG~~~p~~ 216 (276)
+|+|.. |+.
T Consensus 232 ~a~G~~-~~~ 240 (300)
T TIGR01292 232 IAIGHE-PNT 240 (300)
T ss_pred EeeCCC-CCh
Confidence 999988 765
No 115
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.27 E-value=1.9e-11 Score=114.23 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=103.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee--cCC-----CCCCCHHHHHHHHHHHHhCCCeEEeccccC------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY--GIP-----TMKLSKEVVQRRVKLLAAEGIEFKTNINVG------ 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~--~~~-----~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~------ 109 (276)
+||||+||+. |++.|++|+|+|+ .+||++.. .+. +.....++.+++.+.+++.|++++++..+.
T Consensus 221 GpAGl~AA~~-la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~ 297 (515)
T TIGR03140 221 GPAGAAAAIY-AARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED 297 (515)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC
Confidence 6999999999 8999999999986 49998852 221 112335677777888888899887764320
Q ss_pred ----------ccc----hhhhccCCCCCC----------------------------------CCCCCCcchhhhhCCcE
Q psy12810 110 ----------KDI----AAKVTNHTPQSD----------------------------------NQTKHCPPLIVNIVGHS 141 (276)
Q Consensus 110 ----------~~v----~v~iiG~gp~~~----------------------------------g~~Gl~~A~~l~~~G~~ 141 (276)
..+ .+...|+.|..+ |.+|+++|..|+..|.+
T Consensus 298 ~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~ 377 (515)
T TIGR03140 298 GLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRH 377 (515)
T ss_pred CeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcE
Confidence 000 011123321110 45588899999988999
Q ss_pred EEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHh-cCcEEEeeeeecc---c------c------chhhhhcccCEE
Q psy12810 142 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAA-EGIEFKTNINVGK---D------I------AAKELYEEFDAL 205 (276)
Q Consensus 142 Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~---~------~------~~~~~~~~~D~v 205 (276)
|+++++.+.+. .+ ..+.+.+.+ .||++++++.+.. + + +++...+++|.|
T Consensus 378 Vtli~~~~~l~-----------~~----~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~v 442 (515)
T TIGR03140 378 VTVLEFADELK-----------AD----KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGV 442 (515)
T ss_pred EEEEEeCCcCC-----------hh----HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEE
Confidence 99998776531 11 123455555 5999999876531 1 1 112235789999
Q ss_pred EEcCCCCCCCCCC
Q psy12810 206 LLCTGATWPRDLP 218 (276)
Q Consensus 206 VlAtG~~~p~~~~ 218 (276)
++|+|.. |+...
T Consensus 443 i~a~G~~-Pn~~~ 454 (515)
T TIGR03140 443 FVQIGLV-PNTEW 454 (515)
T ss_pred EEEeCCc-CCchH
Confidence 9999998 87653
No 116
>KOG1336|consensus
Probab=99.27 E-value=1.3e-11 Score=109.84 Aligned_cols=141 Identities=19% Similarity=0.367 Sum_probs=102.3
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCc--EEEEEcCCCccceeeeecCC---CCC--CcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGH--SVTVFERNDRVGGLLQYGIP---TMK--LSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~--~Vtvie~~~~~gg~~~~~~~---~~~--~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++|+||+ |.-+++.++..|. +++++.++.. .+|..+ ... ....+..+..+++++.||++++++.
T Consensus 79 ivGgG~~-----g~vaie~~r~~g~~~ri~l~~~~~~----~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 79 IVGGGPG-----GAVAIETLRQVGFTERIALVKREYL----LPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred EEcCCch-----hhhhHhhHHhhCCCcceEEEecccc----CcccchhcccceeeccccccccChhhHhhcCceEEEcce
Confidence 4899999 9999999999886 4777776553 233221 111 1233444556789999999999998
Q ss_pred ecc-cc------chhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEc
Q psy12810 189 VGK-DI------AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIG 261 (276)
Q Consensus 189 v~~-~~------~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIG 261 (276)
++. |. .++...++||+++||||+. |+.+++||.+.+++.+..+.-+. +.+... ...+++||++|
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs~-~~~l~~pG~~~~nv~~ireieda-~~l~~~-------~~~~~~vV~vG 220 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGSS-AKTLDIPGVELKNVFYLREIEDA-NRLVAA-------IQLGGKVVCVG 220 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecCc-cccCCCCCccccceeeeccHHHH-HHHHHH-------hccCceEEEEC
Confidence 862 22 2345578999999999997 99999999998888886664333 322111 24578999999
Q ss_pred CChHHHHHHHHhh
Q psy12810 262 GGDTGCDCIATSL 274 (276)
Q Consensus 262 gG~~G~E~A~~~~ 274 (276)
+|++|+|+|.++.
T Consensus 221 ~G~ig~Evaa~l~ 233 (478)
T KOG1336|consen 221 GGFIGMEVAAALV 233 (478)
T ss_pred chHHHHHHHHHHH
Confidence 9999999998864
No 117
>KOG0405|consensus
Probab=99.26 E-value=3.3e-11 Score=103.07 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=118.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee-ecC------------------------C-----CCCCCHHHH----
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ-YGI------------------------P-----TMKLSKEVV---- 88 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~-~~~------------------------~-----~~~~~~~~~---- 88 (276)
+.+|+++|++ |+..|.+|.|+|..-.+||+|. +|+ | .|.|. .+.
T Consensus 29 GSGGvasARr-Aa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~-~ik~krd 106 (478)
T KOG0405|consen 29 GSGGVASARR-AASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK-VIKQKRD 106 (478)
T ss_pred CcchhHHhHH-HHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH-HHHhhhh
Confidence 5899999999 9999999999999768999992 332 1 12222 111
Q ss_pred -------HHHHHHHHhCCCeEEeccc---------c----Cccc------hhhhccCCCCCC------------------
Q psy12810 89 -------QRRVKLLAAEGIEFKTNIN---------V----GKDI------AAKVTNHTPQSD------------------ 124 (276)
Q Consensus 89 -------~~~~~~l~~~gv~~~~~~~---------v----~~~v------~v~iiG~gp~~~------------------ 124 (276)
.-+.+.+.+.+|++..+.. + ++.+ ....+|+.|..|
T Consensus 107 ayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Le 186 (478)
T KOG0405|consen 107 AYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLE 186 (478)
T ss_pred HHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchh
Confidence 1122455566788776632 1 1111 111357766655
Q ss_pred -----------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-
Q psy12810 125 -----------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD- 192 (276)
Q Consensus 125 -----------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~- 192 (276)
|||++++|-.++.+|.++.++=|.+.+ +| ..++.+.+...+.+...||+++.++.++..
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv---LR------~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~ 257 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV---LR------GFDEMISDLVTEHLEGRGINVHKNSSVTKVI 257 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh---hc------chhHHHHHHHHHHhhhcceeecccccceeee
Confidence 888999999999999999988887763 33 467777788888899999999999987621
Q ss_pred --cc-------hhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCe
Q psy12810 193 --IA-------AKELYEEFDALLLCTGATWPRDLPIPGRQLSGI 227 (276)
Q Consensus 193 --~~-------~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv 227 (276)
.+ .......+|.|+.|+|+. |+...+ +++.-||
T Consensus 258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~-Pntk~L-~le~vGV 299 (478)
T KOG0405|consen 258 KTDDGLELVITSHGTIEDVDTLLWAIGRK-PNTKGL-NLENVGV 299 (478)
T ss_pred ecCCCceEEEEeccccccccEEEEEecCC-CCcccc-cchhcce
Confidence 11 112233599999999998 998776 5554444
No 118
>PRK13984 putative oxidoreductase; Provisional
Probab=99.26 E-value=2.8e-11 Score=115.30 Aligned_cols=67 Identities=33% Similarity=0.561 Sum_probs=61.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 110 (276)
+|||++||.. ++++|++|+|||+.+.+||.+.+++|.++.+.+.+.+..++++++|+++++++.++.
T Consensus 292 G~aGl~aA~~-L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 358 (604)
T PRK13984 292 GPAGLSAAYF-LATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK 358 (604)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence 6999999999 899999999999999999999999999999988888889999999999999877643
No 119
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.25 E-value=4.2e-11 Score=110.47 Aligned_cols=83 Identities=28% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-------c----
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD-------I---- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~-------~---- 193 (276)
|.+|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++. |++++++.+..- .
T Consensus 178 G~~g~E~A~~l~~~g~~Vtli~~~~~~l---~------~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~ 247 (460)
T PRK06292 178 GVIGLELGQALSRLGVKVTVFERGDRIL---P------LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE 247 (460)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecCCCcC---c------chhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence 4559999999999999999999988753 1 24567777778888888 999998766411 1
Q ss_pred -chhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 194 -AAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 194 -~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
++++.++++|.|++|+|.. |+...
T Consensus 248 ~~~~~~~i~~D~vi~a~G~~-p~~~~ 272 (460)
T PRK06292 248 KGGKTETIEADYVLVATGRR-PNTDG 272 (460)
T ss_pred cCCceEEEEeCEEEEccCCc-cCCCC
Confidence 1222458899999999998 88764
No 120
>PRK07846 mycothione reductase; Reviewed
Probab=99.24 E-value=3.7e-11 Score=110.48 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=60.2
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cc-h
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IA-A 195 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~-~ 195 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+ +.+.++++++++.+..- +. .
T Consensus 175 G~iG~E~A~~l~~~G~~Vtli~~~~~ll---~------~~d~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 244 (451)
T PRK07846 175 GFIAAEFAHVFSALGVRVTVVNRSGRLL---R------HLDDDISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLD 244 (451)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEcCCccc---c------ccCHHHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEEC
Confidence 5669999999999999999999988642 1 245555555444 34568999999876421 01 1
Q ss_pred hhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
+..++++|.||+|+|.. |+...+
T Consensus 245 ~g~~i~~D~vl~a~G~~-pn~~~l 267 (451)
T PRK07846 245 DGSTVEADVLLVATGRV-PNGDLL 267 (451)
T ss_pred CCcEeecCEEEEEECCc-cCcccc
Confidence 23358999999999998 877543
No 121
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.24 E-value=2.6e-11 Score=112.83 Aligned_cols=147 Identities=21% Similarity=0.266 Sum_probs=107.0
Q ss_pred hhccCCCCCCCCCCCCcchhhhh---CCcEEEEEcCCCccceeeeecCCCC----CCcHHHHHHHHHHHHhcCcEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNI---VGHSVTVFERNDRVGGLLQYGIPTM----KLSKEVVQRRVKLLAAEGIEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~---~G~~Vtvie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~l~~~gv~i~~~~ 187 (276)
.++|.|.+ |..+.+.+.+ .-+++|+|...+++. +.+..+.++ ..-+++......++.++||+++++.
T Consensus 7 vvvGnGma-----g~r~iEell~~~~~~~~iTvfg~Ep~~n-Y~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~ 80 (793)
T COG1251 7 VIIGNGMA-----GHRTIEELLESAPDLYDITVFGEEPRPN-YNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGE 80 (793)
T ss_pred EEEecccc-----hhhHHHHHHhcCcccceEEEeccCCCcc-ccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCC
Confidence 35899999 9988888776 346799999888764 333222222 2223455555688999999999998
Q ss_pred eecc-c------cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEE
Q psy12810 188 NVGK-D------IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260 (276)
Q Consensus 188 ~v~~-~------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVI 260 (276)
.++. + .+....++.||.+|+||||. |..+++||.+.++++...++-+....... ....++.+||
T Consensus 81 ~v~~idr~~k~V~t~~g~~~~YDkLilATGS~-pfi~PiPG~~~~~v~~~R~i~D~~am~~~--------ar~~~~avVI 151 (793)
T COG1251 81 KVIQIDRANKVVTTDAGRTVSYDKLIIATGSY-PFILPIPGSDLPGVFVYRTIDDVEAMLDC--------ARNKKKAVVI 151 (793)
T ss_pred eeEEeccCcceEEccCCcEeecceeEEecCcc-ccccCCCCCCCCCeeEEecHHHHHHHHHH--------HhccCCcEEE
Confidence 8762 1 23344578999999999999 99999999999998877664443333222 1345668999
Q ss_pred cCChHHHHHHHHhhcC
Q psy12810 261 GGGDTGCDCIATSLRQ 276 (276)
Q Consensus 261 GgG~~G~E~A~~~~r~ 276 (276)
|||..|+|.|..+.++
T Consensus 152 GGGLLGlEaA~~L~~~ 167 (793)
T COG1251 152 GGGLLGLEAARGLKDL 167 (793)
T ss_pred ccchhhhHHHHHHHhC
Confidence 9999999999988753
No 122
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.24 E-value=3.3e-11 Score=107.39 Aligned_cols=64 Identities=30% Similarity=0.446 Sum_probs=52.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 107 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 107 (276)
.|+|+++|.. ++++|++|++||+.+.+||++.++.+.+..+.+......+.+.+.|+++++++.
T Consensus 27 G~aGl~aA~~-l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 90 (352)
T PRK12770 27 GPAGLAAAGY-LACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTK 90 (352)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcE
Confidence 6999999999 899999999999999999998888766665655566666677777888877643
No 123
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.5e-11 Score=105.10 Aligned_cols=138 Identities=20% Similarity=0.283 Sum_probs=97.8
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee--ecCCC-----CCCcHHHHHHHHHHHHhcCcEEEeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ--YGIPT-----MKLSKEVVQRRVKLLAAEGIEFKTNI 187 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~--~~~~~-----~~~~~~~~~~~~~~l~~~gv~i~~~~ 187 (276)
.++|+||+ |.++|.+.+|+|.+.-++- +++||... .++.. +...+++...+.+..+++.|+++...
T Consensus 215 LvVGgGPA-----gaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~q 287 (520)
T COG3634 215 LVVGGGPA-----GAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQ 287 (520)
T ss_pred EEEcCCcc-----hhHHHHHHHhhcchhhhhh--hhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhh
Confidence 35899999 9999999999999976652 44565432 12211 23456777788888888888887665
Q ss_pred eeccc-----------c-chhhhhcccCEEEEcCCCCCCCCCCCCCcC---CCCeeehHHHHHHHHHhhcCCCCCCCCCC
Q psy12810 188 NVGKD-----------I-AAKELYEEFDALLLCTGATWPRDLPIPGRQ---LSGIYFAMSFLESWQKKQMGNENVSPISA 252 (276)
Q Consensus 188 ~v~~~-----------~-~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~---~~gv~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (276)
+.+.- + ..+.-.+++.++|+|||.+ .+...+||.+ .+||.++.+ ++. .++
T Consensus 288 ra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr-WRn~nvPGE~e~rnKGVayCPH-CDG-------------PLF 352 (520)
T COG3634 288 RASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR-WRNMNVPGEDEYRNKGVAYCPH-CDG-------------PLF 352 (520)
T ss_pred hhhcceecCCCCccEEEEecCCceeccceEEEecCcc-hhcCCCCchHHHhhCCeeeCCC-CCC-------------ccc
Confidence 44310 0 0112257889999999998 6778899876 477776543 221 158
Q ss_pred CCCeEEEEcCChHHHHHHHHhh
Q psy12810 253 KDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 253 ~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
++|+|.|||||+||+|.|..+.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLA 374 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLA 374 (520)
T ss_pred CCceEEEECCCcchHHHHHhHH
Confidence 9999999999999999987764
No 124
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.19 E-value=1.9e-10 Score=106.57 Aligned_cols=66 Identities=56% Similarity=0.876 Sum_probs=60.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 109 (276)
.||||+||.. |+++|++|+|||+.+.+||++.+++|.++++..+..+..++++++||++++++.++
T Consensus 152 G~aGl~aA~~-L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 152 GPAGLAAADQ-LNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred cHHHHHHHHH-HHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 6999999999 89999999999999999999999999998888888888899999999999887653
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.17 E-value=1.4e-10 Score=108.55 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=102.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee--cC---CCC--CCCHHHHHHHHHHHHhCCCeEEeccccC------
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY--GI---PTM--KLSKEVVQRRVKLLAAEGIEFKTNINVG------ 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~--~~---~~~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~------ 109 (276)
+|||++||.. |+++|++|+|+|+. +||++.- .+ +.+ ....++.+++.+.+++.|++++.++.+.
T Consensus 220 GpaGl~aA~~-la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~ 296 (517)
T PRK15317 220 GPAGAAAAIY-AARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA 296 (517)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence 6999999999 89999999999874 8999842 22 221 2336677888888889999887664220
Q ss_pred ----------cc----chhhhccCCCCCC----------------------------------CCCCCCcchhhhhCCcE
Q psy12810 110 ----------KD----IAAKVTNHTPQSD----------------------------------NQTKHCPPLIVNIVGHS 141 (276)
Q Consensus 110 ----------~~----v~v~iiG~gp~~~----------------------------------g~~Gl~~A~~l~~~G~~ 141 (276)
.. ..+...|+.+..+ |.+|+++|..|+..+.+
T Consensus 297 ~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~ 376 (517)
T PRK15317 297 GLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKH 376 (517)
T ss_pred CeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCE
Confidence 00 0011123322111 34588888888888888
Q ss_pred EEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHh-cCcEEEeeeeecc---c--------c----chhhhhcccCEE
Q psy12810 142 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAA-EGIEFKTNINVGK---D--------I----AAKELYEEFDAL 205 (276)
Q Consensus 142 Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~i~~~~~v~~---~--------~----~~~~~~~~~D~v 205 (276)
|+++++.+.+. .++ .+.+.+.+ .||++++++.+.. + . ++++.++++|.|
T Consensus 377 Vtlv~~~~~l~-----------~~~----~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v 441 (517)
T PRK15317 377 VTVLEFAPELK-----------ADQ----VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGV 441 (517)
T ss_pred EEEEEECcccc-----------ccH----HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEE
Confidence 88888776531 111 23444554 5999999887641 1 0 122235889999
Q ss_pred EEcCCCCCCCCCC
Q psy12810 206 LLCTGATWPRDLP 218 (276)
Q Consensus 206 VlAtG~~~p~~~~ 218 (276)
++++|.. |+...
T Consensus 442 ~~~~G~~-p~~~~ 453 (517)
T PRK15317 442 FVQIGLV-PNTEW 453 (517)
T ss_pred EEeECCc-cCchH
Confidence 9999998 76643
No 126
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.17 E-value=1.5e-10 Score=109.08 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=99.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeec-----CCCCCC--CHHHHHHHHHHHHhCCCeEEecccc-----C-
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYG-----IPTMKL--SKEVVQRRVKLLAAEGIEFKTNINV-----G- 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~-----~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v-----~- 109 (276)
+||||+||+. |+++|++|+|||++ .+||++... .|.... ...+.+++.+++++.|+++...... +
T Consensus 13 GpAGL~AA~~-lar~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~ 90 (555)
T TIGR03143 13 GPAGLSAGIY-AGRAKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGD 90 (555)
T ss_pred CHHHHHHHHH-HHHCCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCC
Confidence 6999999999 89999999999996 699998643 233322 2566777777888888887522100 0
Q ss_pred --------c----cchhhhccCCCCCC----------------------------------CCCCCCcchhhhhCCcEEE
Q psy12810 110 --------K----DIAAKVTNHTPQSD----------------------------------NQTKHCPPLIVNIVGHSVT 143 (276)
Q Consensus 110 --------~----~v~v~iiG~gp~~~----------------------------------g~~Gl~~A~~l~~~G~~Vt 143 (276)
. +..+..+|+.|..+ |++|+++|..|++.|.+|+
T Consensus 91 ~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vt 170 (555)
T TIGR03143 91 IKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVT 170 (555)
T ss_pred EEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEE
Confidence 0 00011123322111 4458888889999999999
Q ss_pred EEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc--------------chhhhh--cccCE---
Q psy12810 144 VFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI--------------AAKELY--EEFDA--- 204 (276)
Q Consensus 144 vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~--------------~~~~~~--~~~D~--- 204 (276)
++++.+.+. ....... +.+...||++++++.+..-. +++..+ +++|.
T Consensus 171 li~~~~~~~-----------~~~~~~~---~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~ 236 (555)
T TIGR03143 171 VIVREPDFT-----------CAKLIAE---KVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF 236 (555)
T ss_pred EEEeCCccc-----------cCHHHHH---HHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccce
Confidence 999877531 1222221 12334699999998764100 111122 33666
Q ss_pred -EEEcCCCCCCCCCC
Q psy12810 205 -LLLCTGATWPRDLP 218 (276)
Q Consensus 205 -vVlAtG~~~p~~~~ 218 (276)
|++|+|.. |+...
T Consensus 237 ~Vi~a~G~~-Pn~~l 250 (555)
T TIGR03143 237 GVFVFVGYA-PSSEL 250 (555)
T ss_pred EEEEEeCCC-CChhH
Confidence 99999998 87653
No 127
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.17 E-value=9.4e-11 Score=107.67 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=107.0
Q ss_pred ccchhchHHHHHhhCC--CeEEEeccCCCCC----ceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccC-------
Q psy12810 43 FTATLSYHISIQHLVG--HSVTVFERNDRVG----GLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG------- 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G--~~V~l~Ek~~~lG----G~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~------- 109 (276)
.|||++||.. +++.| ++|+|||+++.++ +...+....+..+.++..+..+.+++.|+++.++..+.
T Consensus 9 G~aGl~aA~~-l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~ 87 (444)
T PRK09564 9 TAAGMSAAAK-AKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK 87 (444)
T ss_pred cHHHHHHHHH-HHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC
Confidence 5899999999 77764 6999999988664 11111111122234445555677788899887653220
Q ss_pred ----------c------cchhhhccCCCCCC---------------------------------------CCCCCCcchh
Q psy12810 110 ----------K------DIAAKVTNHTPQSD---------------------------------------NQTKHCPPLI 134 (276)
Q Consensus 110 ----------~------~v~v~iiG~gp~~~---------------------------------------g~~Gl~~A~~ 134 (276)
. +..+..+|+.|..+ |.+|+++|..
T Consensus 88 ~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~ 167 (444)
T PRK09564 88 TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEA 167 (444)
T ss_pred EEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHH
Confidence 0 11111245433211 4568888888
Q ss_pred hhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchhhhhcccCEEE
Q psy12810 135 VNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAKELYEEFDALL 206 (276)
Q Consensus 135 l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~~~~~~~D~vV 206 (276)
|++.|.+|+++++.+.+. + ...++++...+.+.+++.||++++++.+..- ...+..++++|.||
T Consensus 168 l~~~g~~Vtli~~~~~~l---~-----~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi 239 (444)
T PRK09564 168 AKHLGKNVRIIQLEDRIL---P-----DSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVI 239 (444)
T ss_pred HHhcCCcEEEEeCCcccC---c-----hhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEE
Confidence 888999999998877531 1 1245677778888899999999999876521 11122358899999
Q ss_pred EcCCCCCCCCC
Q psy12810 207 LCTGATWPRDL 217 (276)
Q Consensus 207 lAtG~~~p~~~ 217 (276)
+|+|.. |+..
T Consensus 240 ~a~G~~-p~~~ 249 (444)
T PRK09564 240 VATGVK-PNTE 249 (444)
T ss_pred ECcCCC-cCHH
Confidence 999998 7643
No 128
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.16 E-value=1e-10 Score=107.17 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=104.8
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCCceeeecCCCCC----CC-HHHHHHHHHHH-HhCCCeEEeccccC-----
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVGGLLQYGIPTMK----LS-KEVVQRRVKLL-AAEGIEFKTNINVG----- 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lGG~~~~~~~~~~----~~-~~~~~~~~~~l-~~~gv~~~~~~~v~----- 109 (276)
.+|||+||.. ++++ +++|+|+|+++.++ ....++|.+. .. ........+.+ ++.|++++++.++.
T Consensus 10 G~aG~~aA~~-l~~~~~~~~I~li~~~~~~~-~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~ 87 (438)
T PRK13512 10 VAGGATCASQ-IRRLDKESDIIIFEKDRDMS-FANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDE 87 (438)
T ss_pred cHHHHHHHHH-HHhhCCCCCEEEEECCCCcc-cccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECC
Confidence 5899999999 6665 79999999988655 2222333221 11 12222222333 45688877653320
Q ss_pred ------------c------cchhhhccCCCCCC------------------------------------CCCCCCcchhh
Q psy12810 110 ------------K------DIAAKVTNHTPQSD------------------------------------NQTKHCPPLIV 135 (276)
Q Consensus 110 ------------~------~v~v~iiG~gp~~~------------------------------------g~~Gl~~A~~l 135 (276)
. +..+..+|+.|..+ |++|+++|..|
T Consensus 88 ~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l 167 (438)
T PRK13512 88 RQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENL 167 (438)
T ss_pred CCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHH
Confidence 0 11111234433211 55699999999
Q ss_pred hhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc----cc-hhhhhcccCEEEEcCC
Q psy12810 136 NIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD----IA-AKELYEEFDALLLCTG 210 (276)
Q Consensus 136 ~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~----~~-~~~~~~~~D~vVlAtG 210 (276)
++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+..- +. .+...+++|.|++|+|
T Consensus 168 ~~~g~~Vtli~~~~~l~---~------~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G 238 (438)
T PRK13512 168 YERGLHPTLIHRSDKIN---K------LMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVG 238 (438)
T ss_pred HhCCCcEEEEecccccc---h------hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcC
Confidence 99999999999988642 1 246677778888899999999999876521 10 1123578999999999
Q ss_pred CCCCCCC
Q psy12810 211 ATWPRDL 217 (276)
Q Consensus 211 ~~~p~~~ 217 (276)
.+ |+..
T Consensus 239 ~~-pn~~ 244 (438)
T PRK13512 239 TH-PNSK 244 (438)
T ss_pred CC-cChH
Confidence 98 7754
No 129
>KOG0405|consensus
Probab=99.15 E-value=5.7e-11 Score=101.64 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=95.8
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-e------------------------ecCCCC---
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-Q------------------------YGIPTM--- 162 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~------------------------~~~~~~--- 162 (276)
++...+||+|.. |+..|.+.+..|.+|.++|..-.+||.. . |+++..
T Consensus 20 ~fDylvIGgGSG-----GvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 20 DFDYLVIGGGSG-----GVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccceEEEcCCcc-----hhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 333345999999 9999999999999999999876777632 1 223221
Q ss_pred CCcH--------HHHHH----HHHHHHhcCcEEEeeeeec-------ccc-chhhhhcccCEEEEcCCCCCCCCCCCCCc
Q psy12810 163 KLSK--------EVVQR----RVKLLAAEGIEFKTNINVG-------KDI-AAKELYEEFDALLLCTGATWPRDLPIPGR 222 (276)
Q Consensus 163 ~~~~--------~~~~~----~~~~l~~~gv~i~~~~~v~-------~~~-~~~~~~~~~D~vVlAtG~~~p~~~~i~g~ 222 (276)
..++ .++.+ +.+.+.+.+|+++.+..-. ++. +++...+.+.+++||+|.+ |..|.+||.
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~-p~~PnIpG~ 173 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGR-PIIPNIPGA 173 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCc-cCCCCCCch
Confidence 1111 11122 2344566788888775421 212 2233457899999999999 999999997
Q ss_pred CCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 223 QLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 223 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
+.. ..+..|++. ...+||++|||+|++++|+|..+..
T Consensus 174 E~g--idSDgff~L--------------ee~Pkr~vvvGaGYIavE~Agi~~g 210 (478)
T KOG0405|consen 174 ELG--IDSDGFFDL--------------EEQPKRVVVVGAGYIAVEFAGIFAG 210 (478)
T ss_pred hhc--cccccccch--------------hhcCceEEEEccceEEEEhhhHHhh
Confidence 632 233333332 2578999999999999999987653
No 130
>KOG0404|consensus
Probab=99.15 E-value=1.4e-10 Score=93.69 Aligned_cols=140 Identities=24% Similarity=0.298 Sum_probs=100.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC----ccceeeee--------cCCCCCCcHHHHHHHHHHHHhcCcEE
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND----RVGGLLQY--------GIPTMKLSKEVVQRRVKLLAAEGIEF 183 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~----~~gg~~~~--------~~~~~~~~~~~~~~~~~~l~~~gv~i 183 (276)
|||+||+ +..+|.++++...+.++||..- .+||.+.. +.|......++.+.+.++..+.|.++
T Consensus 13 IiGSGPA-----a~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 13 IIGSGPA-----AHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred EEccCch-----HHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4999999 9999999999999999999432 23555431 23333456789999999999999999
Q ss_pred Eeeeeeccccch-------hhhhcccCEEEEcCCCCCCCCCCCCCcCC-----CCeeehHHHHHHHHHhhcCCCCCCCCC
Q psy12810 184 KTNINVGKDIAA-------KELYEEFDALLLCTGATWPRDLPIPGRQL-----SGIYFAMSFLESWQKKQMGNENVSPIS 251 (276)
Q Consensus 184 ~~~~~v~~~~~~-------~~~~~~~D~vVlAtG~~~p~~~~i~g~~~-----~gv~~~~~~l~~~~~~~~~~~~~~~~~ 251 (276)
++.+.-..+.++ +...+.+|.||+|||.. .+++.+||... .|+..+ ...+.. ..+
T Consensus 88 ~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAs-AkRl~~pg~ge~~fWqrGiSaC-AVCDGa-----------api 154 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWTDARPVTADAVILATGAS-AKRLHLPGEGEGEFWQRGISAC-AVCDGA-----------API 154 (322)
T ss_pred eeeehhhccccCCCeEEEecCCceeeeeEEEecccc-eeeeecCCCCcchHHhcccchh-hcccCc-----------chh
Confidence 998764433322 33457899999999998 88888988621 233221 112221 124
Q ss_pred CCCCeEEEEcCChHHHHHHHHh
Q psy12810 252 AKDKNVIVIGGGDTGCDCIATS 273 (276)
Q Consensus 252 ~~~k~vvVIGgG~~G~E~A~~~ 273 (276)
+.+|..+|||||.+++|-|.-+
T Consensus 155 frnk~laVIGGGDsA~EEA~fL 176 (322)
T KOG0404|consen 155 FRNKPLAVIGGGDSAMEEALFL 176 (322)
T ss_pred hcCCeeEEEcCcHHHHHHHHHH
Confidence 8899999999999999987644
No 131
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.13 E-value=2.5e-10 Score=113.96 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=47.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCC--CCCCHHHHHHHHHHHHhCC-CeEEecc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPT--MKLSKEVVQRRVKLLAAEG-IEFKTNI 106 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~--~~~~~~~~~~~~~~l~~~g-v~~~~~~ 106 (276)
+||||+||+. |+++|++|+|+|+++.+||++.+.... .....++.....+++++.+ +++.+++
T Consensus 172 GPAGLaAA~~-aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t 237 (985)
T TIGR01372 172 GPAGLAAALA-AARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRT 237 (985)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCC
Confidence 6999999999 899999999999999999988654321 1223455566777777664 8877654
No 132
>KOG1335|consensus
Probab=99.13 E-value=8e-11 Score=101.95 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=96.9
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee-eec-CCCC--------------------------
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL-QYG-IPTM-------------------------- 162 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~-~~~-~~~~-------------------------- 162 (276)
+..+.+||+||. |..+|...++.|.+.+++|++..+||.. +.| +|+.
T Consensus 39 d~DvvvIG~GpG-----GyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~ 113 (506)
T KOG1335|consen 39 DYDVVVIGGGPG-----GYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSS 113 (506)
T ss_pred cCCEEEECCCCc-----hHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccc
Confidence 445555999999 9999999999999999999999988743 322 2220
Q ss_pred -CCc------------HHHHHHHHHHHHhcCcEEEeeeeecc--------ccchhhhhcccCEEEEcCCCCCCCCCCCCC
Q psy12810 163 -KLS------------KEVVQRRVKLLAAEGIEFKTNINVGK--------DIAAKELYEEFDALLLCTGATWPRDLPIPG 221 (276)
Q Consensus 163 -~~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~--------~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g 221 (276)
..+ +++.......+++.+|++..++--.. ..+++...+.+..+|+|||+. .+++||
T Consensus 114 ~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe---V~~~PG 190 (506)
T KOG1335|consen 114 VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE---VTPFPG 190 (506)
T ss_pred eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc---cCCCCC
Confidence 000 11122233455677787777654221 124455678999999999985 234556
Q ss_pred cC--CCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhcC
Q psy12810 222 RQ--LSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276 (276)
Q Consensus 222 ~~--~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r~ 276 (276)
.+ .+-+.++...+.. .+.+++.+|||+|.+|+|+.....||
T Consensus 191 I~IDekkIVSStgALsL--------------~~vPk~~~viG~G~IGLE~gsV~~rL 233 (506)
T KOG1335|consen 191 ITIDEKKIVSSTGALSL--------------KEVPKKLTVIGAGYIGLEMGSVWSRL 233 (506)
T ss_pred eEecCceEEecCCccch--------------hhCcceEEEEcCceeeeehhhHHHhc
Confidence 54 3445554333322 26789999999999999999887765
No 133
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.07 E-value=3.4e-10 Score=110.61 Aligned_cols=164 Identities=14% Similarity=0.055 Sum_probs=107.1
Q ss_pred ccchhchHHHHHhh---CCCeEEEeccCCCCCceeeecC----CCCCCCHHHHHHHHHHHHhCCCeEEeccccC------
Q psy12810 43 FTATLSYHISIQHL---VGHSVTVFERNDRVGGLLQYGI----PTMKLSKEVVQRRVKLLAAEGIEFKTNINVG------ 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~---~G~~V~l~Ek~~~lGG~~~~~~----~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~------ 109 (276)
.|||++||.. +.+ .+++|||||+.+.++-. +..+ .......++.....+++++.||++++++.+.
T Consensus 7 G~AG~~aa~~-l~~~~~~~~~Itvi~~e~~~~y~-r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~ 84 (785)
T TIGR02374 7 GMAGHRCIEE-VLKLNRHMFEITIFGEEPHPNYN-RILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ 84 (785)
T ss_pred CHHHHHHHHH-HHhcCCCCCeEEEEeCCCCCCcc-cccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC
Confidence 5899999988 544 46899999999877521 1111 1111223333334566778899998875331
Q ss_pred --------c----cchhhhccCCCCCC-------------------------------------CCCCCCcchhhhhCCc
Q psy12810 110 --------K----DIAAKVTNHTPQSD-------------------------------------NQTKHCPPLIVNIVGH 140 (276)
Q Consensus 110 --------~----~v~v~iiG~gp~~~-------------------------------------g~~Gl~~A~~l~~~G~ 140 (276)
. +..+..+|+.|..+ |++|+++|..|++.|.
T Consensus 85 k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~ 164 (785)
T TIGR02374 85 KQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGM 164 (785)
T ss_pred CEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCC
Confidence 0 11111245433221 5569999999999999
Q ss_pred EEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------c-chhhhhcccCEEEEcCCC
Q psy12810 141 SVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------I-AAKELYEEFDALLLCTGA 211 (276)
Q Consensus 141 ~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~-~~~~~~~~~D~vVlAtG~ 211 (276)
+|+|+++.+.+. . ..++++....+.+.+++.||++++++.+..- + ..+..++++|.||+|+|.
T Consensus 165 ~Vtvv~~~~~ll---~-----~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 165 DVSVIHHAPGLM---A-----KQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred eEEEEccCCchh---h-----hhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 999999887641 1 1245666667778889999999999865311 0 112336889999999999
Q ss_pred CCCCCC
Q psy12810 212 TWPRDL 217 (276)
Q Consensus 212 ~~p~~~ 217 (276)
+ |+..
T Consensus 237 ~-Pn~~ 241 (785)
T TIGR02374 237 R-PNDE 241 (785)
T ss_pred C-cCcH
Confidence 8 7764
No 134
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.06 E-value=5.4e-10 Score=102.74 Aligned_cols=33 Identities=42% Similarity=0.553 Sum_probs=31.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+||||+||.. |.+.|++|+||||++.+||+|++
T Consensus 19 G~aGL~aA~~-l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 19 GAAGLVAARE-LRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred cHHHHHHHHH-HHhcCCeEEEEecCCCCcceeec
Confidence 7999999999 89999999999999999999976
No 135
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.05 E-value=3.5e-10 Score=102.37 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=101.9
Q ss_pred ccchhchHHHHHhhCCC--eEEEeccCCCCCceeeecCCCCCCCHHH---------HHHHHHHHHhCCCeEEecccc---
Q psy12810 43 FTATLSYHISIQHLVGH--SVTVFERNDRVGGLLQYGIPTMKLSKEV---------VQRRVKLLAAEGIEFKTNINV--- 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~--~V~l~Ek~~~lGG~~~~~~~~~~~~~~~---------~~~~~~~l~~~gv~~~~~~~v--- 108 (276)
.||||+||.. ++++|+ +|+|+++++... |.-|+. ++.+ .....+.+.+.+|++++++.+
T Consensus 12 G~AG~~aA~~-Lr~~~~~~~I~li~~e~~~~----y~r~~l--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~i 84 (396)
T PRK09754 12 GQAAAMAAAS-LRQQGFTGELHLFSDERHLP----YERPPL--SKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTL 84 (396)
T ss_pred hHHHHHHHHH-HHhhCCCCCEEEeCCCCCCC----CCCCCC--CHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEE
Confidence 6999999999 888887 799999976443 211111 1111 001123456678888877432
Q ss_pred -----------Cc----cchhhhccCCCCCC-------------------------------------CCCCCCcchhhh
Q psy12810 109 -----------GK----DIAAKVTNHTPQSD-------------------------------------NQTKHCPPLIVN 136 (276)
Q Consensus 109 -----------~~----~v~v~iiG~gp~~~-------------------------------------g~~Gl~~A~~l~ 136 (276)
+. +..+..+|+.|..+ |++|+++|..|+
T Consensus 85 d~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~ 164 (396)
T PRK09754 85 GRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASAT 164 (396)
T ss_pred ECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 00 11111234433110 567999999999
Q ss_pred hCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-------c-chhhhhcccCEEEEc
Q psy12810 137 IVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD-------I-AAKELYEEFDALLLC 208 (276)
Q Consensus 137 ~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~-------~-~~~~~~~~~D~vVlA 208 (276)
+.|.+||++++.+.+.+ + ..++.....+.+.+++.||++++++.+..- . ..+...+++|.||+|
T Consensus 165 ~~g~~Vtlv~~~~~~l~--~------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a 236 (396)
T PRK09754 165 QRRCKVTVIELAATVMG--R------NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYG 236 (396)
T ss_pred HcCCeEEEEecCCcchh--h------hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEEC
Confidence 99999999999887521 0 134556667778888999999999876421 0 112235789999999
Q ss_pred CCCCCCCC
Q psy12810 209 TGATWPRD 216 (276)
Q Consensus 209 tG~~~p~~ 216 (276)
+|.. |+.
T Consensus 237 ~G~~-pn~ 243 (396)
T PRK09754 237 IGIS-AND 243 (396)
T ss_pred CCCC-hhh
Confidence 9998 765
No 136
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.03 E-value=1.6e-09 Score=105.36 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=51.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC----------------------------CCCceeeecCCCCCCCHHHHHHHHHH
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND----------------------------RVGGLLQYGIPTMKLSKEVVQRRVKL 94 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~----------------------------~lGG~~~~~~~~~~~~~~~~~~~~~~ 94 (276)
+||||+||+. |+++||+|||||+.+ ..||...||+| +++++..++.. ..
T Consensus 392 GPAGLsAA~~-La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R~~k~~l~~i-~~ 468 (1028)
T PRK06567 392 GPAGFSLSYY-LLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VRWDKNNLDIL-RL 468 (1028)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-ccchHHHHHHH-HH
Confidence 7999999999 899999999999852 28999999999 88998877663 33
Q ss_pred HHhCC--CeEEeccccCccc
Q psy12810 95 LAAEG--IEFKTNINVGKDI 112 (276)
Q Consensus 95 l~~~g--v~~~~~~~v~~~v 112 (276)
+.+.| ++++.|..++.++
T Consensus 469 il~~g~~v~~~~gv~lG~di 488 (1028)
T PRK06567 469 ILERNNNFKYYDGVALDFNI 488 (1028)
T ss_pred HHhcCCceEEECCeEECccC
Confidence 44444 5555576655443
No 137
>KOG2495|consensus
Probab=98.99 E-value=7.9e-10 Score=97.17 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=87.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCC----cHHHHHHHHHHHHhc--CcEEEeeeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKL----SKEVVQRRVKLLAAE--GIEFKTNINV 189 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~----~~~~~~~~~~~l~~~--gv~i~~~~~v 189 (276)
+.|+|-+ |+++...|-..-++|++|++.++. ++..-+|..+. -+.+.+-......+. +++++.....
T Consensus 60 VLGsGW~-----a~S~lk~ldts~YdV~vVSPRnyF--lFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 60 VLGSGWG-----AISLLKKLDTSLYDVTVVSPRNYF--LFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred EEcCchH-----HHHHHHhccccccceEEeccccce--EEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 4898888 888888887788999999999975 22222332211 133444433333333 4555554332
Q ss_pred ccc--------------cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCee-----ehHHH----HHHHHHhhcCCCC
Q psy12810 190 GKD--------------IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIY-----FAMSF----LESWQKKQMGNEN 246 (276)
Q Consensus 190 ~~~--------------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~-----~~~~~----l~~~~~~~~~~~~ 246 (276)
..+ ....+..+.||++|+|+|+. ++++.+||....+.+ ++.++ ++..+.... .
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~-~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~---~ 208 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAE-PNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAEL---P 208 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCC-CCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhc---C
Confidence 211 11234578999999999998 999999987643321 22111 111111111 0
Q ss_pred CCCCC--CCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 247 VSPIS--AKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 247 ~~~~~--~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
.++.. ..--++||||||++|+|+|.++..
T Consensus 209 ~l~~eerkRlLh~VVVGGGPTGVEFAaEL~D 239 (491)
T KOG2495|consen 209 GLSDEERKRLLHFVVVGGGPTGVEFAAELAD 239 (491)
T ss_pred CCChHHhhheEEEEEECCCCcceeehHHHHH
Confidence 11100 112368999999999999999864
No 138
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.97 E-value=1.5e-09 Score=106.40 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=108.2
Q ss_pred ccchhchHHHHHhh----CCCeEEEeccCCCCC-ceeee--cCCCCCCCHHHHHHHHHHHHhCCCeEEeccccC------
Q psy12810 43 FTATLSYHISIQHL----VGHSVTVFERNDRVG-GLLQY--GIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG------ 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~----~G~~V~l~Ek~~~lG-G~~~~--~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~------ 109 (276)
++||+.+|.. +.+ .+++||||++.+.++ ..+.. -... +...++......++++.||++++++.+.
T Consensus 12 G~AG~~aa~~-L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~ 89 (847)
T PRK14989 12 GMVGHRFIED-LLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGERAITINRQE 89 (847)
T ss_pred CHHHHHHHHH-HHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC
Confidence 6899999999 544 468999999988765 11111 0111 1223333333466778899988875320
Q ss_pred --------c----cchhhhccCCCCCC-------------------------------------CCCCCCcchhhhhCCc
Q psy12810 110 --------K----DIAAKVTNHTPQSD-------------------------------------NQTKHCPPLIVNIVGH 140 (276)
Q Consensus 110 --------~----~v~v~iiG~gp~~~-------------------------------------g~~Gl~~A~~l~~~G~ 140 (276)
. +..+..+|+.|..| |++|+++|..|++.|.
T Consensus 90 ~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~ 169 (847)
T PRK14989 90 KVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGV 169 (847)
T ss_pred cEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 0 11111245543221 5679999999999999
Q ss_pred EEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc-----------chhhhhcccCEEEEcC
Q psy12810 141 SVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI-----------AAKELYEEFDALLLCT 209 (276)
Q Consensus 141 ~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~-----------~~~~~~~~~D~vVlAt 209 (276)
+|+|+++.+.+. + ..++++....+.+.+++.||++++++.+..-. ..+..++++|.||+|+
T Consensus 170 ~VtvVe~~~~ll---~-----~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 170 ETHVIEFAPMLM---A-----EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred eEEEEeccccch---h-----hhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 999999988641 1 13566777788888999999999998664110 0122368899999999
Q ss_pred CCCCCCCC
Q psy12810 210 GATWPRDL 217 (276)
Q Consensus 210 G~~~p~~~ 217 (276)
|.+ |+..
T Consensus 242 G~r-Pn~~ 248 (847)
T PRK14989 242 GIR-PQDK 248 (847)
T ss_pred Ccc-cCch
Confidence 998 8764
No 139
>KOG4716|consensus
Probab=98.97 E-value=4.4e-09 Score=89.97 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-------------
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------------- 191 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~------------- 191 (276)
||+++++|-+|+-.|++|||.=|+-- ++ -.+.++.+...+.+++.|++|...+....
T Consensus 207 ~YVaLECAgFL~gfg~~vtVmVRSI~----Lr------GFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~ 276 (503)
T KOG4716|consen 207 GYVALECAGFLKGFGYDVTVMVRSIL----LR------GFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFY 276 (503)
T ss_pred ceeeeehhhhHhhcCCCcEEEEEEee----cc------cccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEe
Confidence 78999999999999999998876542 22 46788888999999999999988765331
Q ss_pred --ccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeee
Q psy12810 192 --DIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYF 229 (276)
Q Consensus 192 --~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~ 229 (276)
..++++.+..||+|+.|.|+. +...++ |++..||..
T Consensus 277 k~t~t~~~~~~~ydTVl~AiGR~-~~~~~l-~L~~~GVk~ 314 (503)
T KOG4716|consen 277 KNTNTGEEGEEEYDTVLWAIGRK-ALTDDL-NLDNAGVKT 314 (503)
T ss_pred ecccccccccchhhhhhhhhccc-cchhhc-CCCccceee
Confidence 112334456799999999998 776666 566555543
No 140
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.92 E-value=4.9e-10 Score=99.13 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=77.3
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC-cEEEEEcCCCccceeeeecC--------------------CC------------
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG-HSVTVFERNDRVGGLLQYGI--------------------PT------------ 161 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G-~~Vtvie~~~~~gg~~~~~~--------------------~~------------ 161 (276)
..||.||+ +++.|..|...+ .++..+|+.+.. .|.-++ |.
T Consensus 6 igIG~GP~-----nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 6 IGIGFGPF-----NLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EEE--SHH-----HHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred EEEeeCHH-----HHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 34899999 999999888766 889999988865 232111 00
Q ss_pred -----------CCCc-HHHHHHHHHHHH-hcCcEEEeeeeecc------------cc-----chhhhhcccCEEEEcCCC
Q psy12810 162 -----------MKLS-KEVVQRRVKLLA-AEGIEFKTNINVGK------------DI-----AAKELYEEFDALLLCTGA 211 (276)
Q Consensus 162 -----------~~~~-~~~~~~~~~~l~-~~gv~i~~~~~v~~------------~~-----~~~~~~~~~D~vVlAtG~ 211 (276)
+..+ .++.++ .+++. +..-.+++++.|+. .+ +++...+.++.||+|+|.
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dY-l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDY-LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHH-HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CChhhhhhcCCCCCCHHHHHHH-HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 0111 222222 23333 33433666666541 01 124457889999999998
Q ss_pred CCCCCCCCCC-cC-CCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 212 TWPRDLPIPG-RQ-LSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 212 ~~p~~~~i~g-~~-~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
. |..|.... .. .+.++++.+++..... ....++|+|||||.||.|++..+.+
T Consensus 158 ~-P~iP~~~~~~~~~~~v~Hss~~~~~~~~-----------~~~~~~V~VVGgGQSAAEi~~~L~~ 211 (341)
T PF13434_consen 158 Q-PRIPEWFQDLPGSPRVFHSSEYLSRIDQ-----------SLAGKRVAVVGGGQSAAEIFLDLLR 211 (341)
T ss_dssp E-E---GGGGGGTT-TTEEEGGGHHHHHT----------------EEEEEE-SSHHHHHHHHHHHH
T ss_pred C-CCCCcchhhcCCCCCEEEehHhhhcccc-----------ccCCCeEEEECCcHhHHHHHHHHHh
Confidence 7 88876533 22 3679999988876532 1678999999999999999988764
No 141
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.92 E-value=5.4e-09 Score=94.04 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=103.1
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCC--c-eeeecCCCCCCCHHHHHH-HHHHHHhCCCeEEeccccC-------
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVG--G-LLQYGIPTMKLSKEVVQR-RVKLLAAEGIEFKTNINVG------- 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lG--G-~~~~~~~~~~~~~~~~~~-~~~~l~~~gv~~~~~~~v~------- 109 (276)
.+||+.+|.. ++++ ..+|||+++++..- . .+.+..+....+.++... ..+.+++.|++++++..+.
T Consensus 11 G~AG~~~a~~-lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~ 89 (377)
T PRK04965 11 GFAARQLVKN-IRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ 89 (377)
T ss_pred cHHHHHHHHH-HHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC
Confidence 5899999999 6664 56899999876311 1 111222333333444433 3345677899888764320
Q ss_pred ----------ccchhhhccCCCCCC-----------------------------------CCCCCCcchhhhhCCcEEEE
Q psy12810 110 ----------KDIAAKVTNHTPQSD-----------------------------------NQTKHCPPLIVNIVGHSVTV 144 (276)
Q Consensus 110 ----------~~v~v~iiG~gp~~~-----------------------------------g~~Gl~~A~~l~~~G~~Vtv 144 (276)
-+..+..+|+.|..+ |.+|+++|..|++.|.+|++
T Consensus 90 ~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtl 169 (377)
T PRK04965 90 VVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTL 169 (377)
T ss_pred EEEECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 011111234433211 44588999999999999999
Q ss_pred EcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c-----c-chhhhhcccCEEEEcCCCCCCC
Q psy12810 145 FERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D-----I-AAKELYEEFDALLLCTGATWPR 215 (276)
Q Consensus 145 ie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----~-~~~~~~~~~D~vVlAtG~~~p~ 215 (276)
+++.+.+. . ...+++....+.+.+++.|+++++++.+.. + + ..+..++++|.||+|+|.. |+
T Consensus 170 v~~~~~~l---~-----~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~-p~ 240 (377)
T PRK04965 170 VDNAASLL---A-----SLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR-PN 240 (377)
T ss_pred EecCCccc---c-----hhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC-cc
Confidence 99888642 1 123556667777888899999999877641 0 0 1123468899999999998 76
Q ss_pred C
Q psy12810 216 D 216 (276)
Q Consensus 216 ~ 216 (276)
.
T Consensus 241 ~ 241 (377)
T PRK04965 241 T 241 (377)
T ss_pred h
Confidence 4
No 142
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.88 E-value=1.7e-10 Score=94.18 Aligned_cols=125 Identities=27% Similarity=0.369 Sum_probs=79.3
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCC------cHHHH--H--HHHHHHHhcCcEEEe
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKL------SKEVV--Q--RRVKLLAAEGIEFKT 185 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~------~~~~~--~--~~~~~l~~~gv~i~~ 185 (276)
|||+||+ |+.+|..|++.+.+|+++++.+.... ....++.... ..... . .+.+.+...+++++.
T Consensus 4 IIGgG~a-----Gl~aA~~l~~~~~~v~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (201)
T PF07992_consen 4 IIGGGPA-----GLSAALELARPGAKVLIIEKSPGTPY-NSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRL 77 (201)
T ss_dssp EESSSHH-----HHHHHHHHHHTTSEEEEESSSSHHHH-HHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEH
T ss_pred EEecHHH-----HHHHHHHHhcCCCeEEEEeccccccc-ccccccccccccccccccccccccccccccccccceEEEee
Confidence 4999999 99999999999999999998875431 1111110000 00111 1 334445677899877
Q ss_pred eeeec-cc----------------cchhhhhcccCEEEEcCCCCCCCCCCCCCcCC----CCeeehHHHHHHHHHhhcCC
Q psy12810 186 NINVG-KD----------------IAAKELYEEFDALLLCTGATWPRDLPIPGRQL----SGIYFAMSFLESWQKKQMGN 244 (276)
Q Consensus 186 ~~~v~-~~----------------~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~----~gv~~~~~~l~~~~~~~~~~ 244 (276)
++.+. .+ .+++..++.||+||+|||+. |+.+++||.+. ..+.++..++..
T Consensus 78 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~-------- 148 (201)
T PF07992_consen 78 NAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR-PRTPNIPGEEVAYFLRGVDDAQRFLEL-------- 148 (201)
T ss_dssp HHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE-EEEESSTTTTTECBTTSEEHHHHHHTH--------
T ss_pred ccccccccccccccccCcccceeeccCCceEecCCeeeecCccc-cceeecCCCcccccccccccccccccc--------
Confidence 65543 11 12234568999999999998 88889988632 334444333332
Q ss_pred CCCCCCCCCCCeEEEEc
Q psy12810 245 ENVSPISAKDKNVIVIG 261 (276)
Q Consensus 245 ~~~~~~~~~~k~vvVIG 261 (276)
...+++++|||
T Consensus 149 ------~~~~~~v~VvG 159 (201)
T PF07992_consen 149 ------LESPKRVAVVG 159 (201)
T ss_dssp ------SSTTSEEEEES
T ss_pred ------ccccccccccc
Confidence 13455999999
No 143
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.88 E-value=1.8e-08 Score=88.42 Aligned_cols=135 Identities=22% Similarity=0.289 Sum_probs=76.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC--------ceeeecCCCCCCCHHHHHHHH---HHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG--------GLLQYGIPTMKLSKEVVQRRV---KLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG--------G~~~~~~~~~~~~~~~~~~~~---~~l~~~gv~~~~~~~v~~~ 111 (276)
+||||-||.. |+++|++|+|||+.+.+| |-|++-.... +.+++..+- ..++.. +..-.+.+
T Consensus 12 GpAGlMaA~~-aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa-----l~~ft~~d 83 (408)
T COG2081 12 GPAGLMAAIS-AAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA-----LARFTPED 83 (408)
T ss_pred CHHHHHHHHH-HhhcCCEEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH-----HHhCCHHH
Confidence 6999999999 999999999999999887 5665543111 222221110 000000 00000000
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 191 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 191 (276)
.+ ..+.++|.+ ..|... |-++ |.....+++++.+.+.+++.||++++++.+..
T Consensus 84 -~i------------------~~~e~~Gi~--~~e~~~--Gr~F----p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~ 136 (408)
T COG2081 84 -FI------------------DWVEGLGIA--LKEEDL--GRMF----PDSDKASPIVDALLKELEALGVTIRTRSRVSS 136 (408)
T ss_pred -HH------------------HHHHhcCCe--eEEccC--ceec----CCccchHHHHHHHHHHHHHcCcEEEecceEEe
Confidence 00 112223332 232211 2122 21123467888899999999999999998751
Q ss_pred ---c-----cchhhh-hcccCEEEEcCCCC
Q psy12810 192 ---D-----IAAKEL-YEEFDALLLCTGAT 212 (276)
Q Consensus 192 ---~-----~~~~~~-~~~~D~vVlAtG~~ 212 (276)
+ ...+.. ++.+|.+|+|||..
T Consensus 137 v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 137 VEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred EEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 1 112222 68999999999954
No 144
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.86 E-value=2.1e-09 Score=106.40 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=69.9
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++++.| ||+||+ |+++|.+|++.|++|||||+.+.+||+++|++|.++++++++++..+.+++.|++|++|+.
T Consensus 306 gkkVaV--IGsGPA-----GLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 306 KPPIAV--VGSGPS-----GLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCeEEE--ECCCHH-----HHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEE
Confidence 566666 999999 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred ec
Q psy12810 189 VG 190 (276)
Q Consensus 189 v~ 190 (276)
+.
T Consensus 379 vG 380 (944)
T PRK12779 379 VG 380 (944)
T ss_pred ec
Confidence 63
No 145
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-08 Score=85.84 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=93.8
Q ss_pred ccchhchHHHHHhhCCCe-EEEeccCCCCCceeeec-----CCCCCC---CHHHHHHHHHHHHhCCCeEEecccc----C
Q psy12810 43 FTATLSYHISIQHLVGHS-VTVFERNDRVGGLLQYG-----IPTMKL---SKEVVQRRVKLLAAEGIEFKTNINV----G 109 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~-V~l~Ek~~~lGG~~~~~-----~~~~~~---~~~~~~~~~~~l~~~gv~~~~~~~v----~ 109 (276)
+||||+||++ |+++|.+ +.|+|+ ..+||++... .|.+.. ..++.+...++....|+++...... .
T Consensus 12 GPAGl~AAiy-a~r~~l~~~li~~~-~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~ 89 (305)
T COG0492 12 GPAGLTAAIY-AARAGLKVVLILEG-GEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVEKVELE 89 (305)
T ss_pred CHHHHHHHHH-HHHcCCCcEEEEec-CCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeec
Confidence 6999999999 9999999 555555 5689888543 355544 2566677777777777776542100 0
Q ss_pred c--------------cchhhhccCCCCCCC---------------------------------CCCCCcchhhhhCCcEE
Q psy12810 110 K--------------DIAAKVTNHTPQSDN---------------------------------QTKHCPPLIVNIVGHSV 142 (276)
Q Consensus 110 ~--------------~v~v~iiG~gp~~~g---------------------------------~~Gl~~A~~l~~~G~~V 142 (276)
. +..+..+|+.+..++ -..++.|.+|.+.+.+|
T Consensus 90 ~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~Al~L~~~a~~V 169 (305)
T COG0492 90 GGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKV 169 (305)
T ss_pred CceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCccccCCeEEEEcCCHHHHHHHHHHHHhcCeE
Confidence 0 001112233322221 11444555666666666
Q ss_pred EEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhc-CcEEEeeeeeccc------------cchhhhhcccCEEEEcC
Q psy12810 143 TVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKTNINVGKD------------IAAKELYEEFDALLLCT 209 (276)
Q Consensus 143 tvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~~------------~~~~~~~~~~D~vVlAt 209 (276)
+++-+.+.+ ...+ .+.+.+.+. ++++++++.+..- ..+.+..+.+|.|+++.
T Consensus 170 tlv~r~~~~-----------ra~~----~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~i 234 (305)
T COG0492 170 TLVHRRDEF-----------RAEE----ILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAI 234 (305)
T ss_pred EEEecCccc-----------CcCH----HHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEec
Confidence 666655542 2222 344445554 8999999776410 01334467899999999
Q ss_pred CCCCCCCCC
Q psy12810 210 GATWPRDLP 218 (276)
Q Consensus 210 G~~~p~~~~ 218 (276)
|.. |+...
T Consensus 235 G~~-p~~~~ 242 (305)
T COG0492 235 GHL-PNTEL 242 (305)
T ss_pred CCC-CchHH
Confidence 998 77543
No 146
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.73 E-value=4.4e-08 Score=89.61 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc-c------cchhh
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D------IAAKE 197 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~------~~~~~ 197 (276)
|.+|+++|..|++.|.+|+++++.+.+. .+ ..++++...+.+.+++.||++++++.+.. + ...+.
T Consensus 146 G~~g~e~A~~l~~~g~~Vtli~~~~~~~--~~------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g 217 (427)
T TIGR03385 146 GYIGIEMAEALRERGKNVTLIHRSERIL--NK------LFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG 217 (427)
T ss_pred CHHHHHHHHHHHhCCCcEEEEECCcccC--cc------ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC
Confidence 4457888888888999999999877641 11 24566677777888999999999887642 1 11123
Q ss_pred hhcccCEEEEcCCCCCCCCC
Q psy12810 198 LYEEFDALLLCTGATWPRDL 217 (276)
Q Consensus 198 ~~~~~D~vVlAtG~~~p~~~ 217 (276)
.++++|.||+|+|.. |+..
T Consensus 218 ~~i~~D~vi~a~G~~-p~~~ 236 (427)
T TIGR03385 218 GVYQADMVILATGIK-PNSE 236 (427)
T ss_pred CEEEeCEEEECCCcc-CCHH
Confidence 458899999999998 7653
No 147
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.72 E-value=3.7e-08 Score=88.05 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=66.6
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhC-------------CcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHh
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIV-------------GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAA 178 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~-------------G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (276)
.++.|+|+||. |.|+|-.|++. ..+|+++|+.+++- + .+++++..+..+.|++
T Consensus 156 lti~IvGgG~T-----GVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL---p------~~~~~l~~~a~~~L~~ 221 (405)
T COG1252 156 LTIVIVGGGPT-----GVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL---P------MFPPKLSKYAERALEK 221 (405)
T ss_pred eEEEEECCChh-----HHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc---c------CCCHHHHHHHHHHHHH
Confidence 34556888888 99999777532 13899999999852 2 4678888899999999
Q ss_pred cCcEEEeeeeeccc----cc--hhhhhcccCEEEEcCCCC
Q psy12810 179 EGIEFKTNINVGKD----IA--AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 179 ~gv~i~~~~~v~~~----~~--~~~~~~~~D~vVlAtG~~ 212 (276)
.||++++++.|+.- +. ..+.++++|++|-|+|.+
T Consensus 222 ~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 222 LGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence 99999999988621 11 111159999999999988
No 148
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.72 E-value=2.2e-08 Score=92.32 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=60.8
Q ss_pred ccchhchHHHHHhh--CCCeEEEeccCCCCCceeeecC-CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccch
Q psy12810 43 FTATLSYHISIQHL--VGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 113 (276)
Q Consensus 43 ~paGl~aA~~~aa~--~G~~V~l~Ek~~~lGG~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~ 113 (276)
+||||.||.. |++ +||+|+|||+.+.+||++++++ |.+...+.+.+++...+...+|+++.|..+++++.
T Consensus 35 GPAGl~AA~~-L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~dvt 107 (491)
T PLN02852 35 GPAGFYTADK-LLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVS 107 (491)
T ss_pred cHHHHHHHHH-HHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECcccc
Confidence 6999999999 665 8999999999999999999998 77777788888888888889999988877765544
No 149
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.66 E-value=5.7e-08 Score=88.73 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=58.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCC-HHHHHHHHHHHHhCCCeEEeccccCccch
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLS-KEVVQRRVKLLAAEGIEFKTNINVGKDIA 113 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~~v~ 113 (276)
+||||.||..+++++||+|+||||.+.+||++++|+|+.... +.+..++...+...++++..|..++.++.
T Consensus 48 GPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~Dvt 119 (506)
T PTZ00188 48 GPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLK 119 (506)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecCccC
Confidence 699999999856788999999999999999999999766654 66777777777788999888877766543
No 150
>KOG4716|consensus
Probab=98.64 E-value=7.2e-08 Score=82.67 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=45.3
Q ss_pred hhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhh
Q psy12810 196 KELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
++..+.++.+|||||-+ |+-|++||...-++. +.+.+.. .+.+.+-+|||+|++|+|+|.-++
T Consensus 156 k~~~~ta~~fvIatG~R-PrYp~IpG~~Ey~IT-SDDlFsl--------------~~~PGkTLvVGa~YVaLECAgFL~ 218 (503)
T KOG4716|consen 156 KERFLTAENFVIATGLR-PRYPDIPGAKEYGIT-SDDLFSL--------------PYEPGKTLVVGAGYVALECAGFLK 218 (503)
T ss_pred ceEEeecceEEEEecCC-CCCCCCCCceeeeec-ccccccc--------------cCCCCceEEEccceeeeehhhhHh
Confidence 44568899999999999 999999996544432 2221111 245556689999999999986554
No 151
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.64 E-value=4.1e-08 Score=88.78 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=66.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC--------ceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchh
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG--------GLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG--------G~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v 114 (276)
+||||.||+. |+++|++|+|+||++++| |.|++-...... . ++..+.....+...
T Consensus 9 GaAGl~aA~~-aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~-~---------------~~~~~~~~~~~f~~ 71 (409)
T PF03486_consen 9 GAAGLMAAIT-AAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDP-S---------------EFLSGYGRNPKFLK 71 (409)
T ss_dssp SHHHHHHHHH-HHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSG-G---------------GEECS-TBTTTCTH
T ss_pred CHHHHHHHHH-HHhCCCCEEEEeCCcccccceeecCCCCccccccccch-h---------------hHhhhcccchHHHH
Confidence 6999999999 899999999999999886 566654311000 0 01111000000000
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK--- 191 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~--- 191 (276)
.+....+ --.+-.++.+.|.... ++.+.+ +.+ ......++++.+.+.+++.||++++++.|..
T Consensus 72 ~~l~~f~------~~d~~~ff~~~Gv~~~-~~~~gr---~fP----~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 72 SALKRFS------PEDLIAFFEELGVPTK-IEEDGR---VFP----KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK 137 (409)
T ss_dssp HHHHHS-------HHHHHHHHHHTT--EE-E-STTE---EEE----TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE
T ss_pred HHHhcCC------HHHHHHHHHhcCCeEE-EcCCCE---ECC----CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee
Confidence 0000000 0112234555665533 333333 222 1123467888888999999999999998751
Q ss_pred ------ccch-hhhhcccCEEEEcCCCC
Q psy12810 192 ------DIAA-KELYEEFDALLLCTGAT 212 (276)
Q Consensus 192 ------~~~~-~~~~~~~D~vVlAtG~~ 212 (276)
.+.. +...+.+|.||+|+|..
T Consensus 138 ~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 138 KEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp ETTEEEEEEETTTEEEEESEEEE----S
T ss_pred cCCceeEeeccCcccccCCEEEEecCCC
Confidence 1122 44578899999999976
No 152
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.62 E-value=1.6e-07 Score=84.11 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=92.0
Q ss_pred ccchhchHHHHHhh---CCCeEEEeccCCCCC--ceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc---------
Q psy12810 43 FTATLSYHISIQHL---VGHSVTVFERNDRVG--GLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV--------- 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~---~G~~V~l~Ek~~~lG--G~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--------- 108 (276)
.+||+.+|.. +++ .+++|+|+|+++..= ..+.........+.++.....+++++.|+++..+...
T Consensus 8 G~aG~~~a~~-l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V 86 (364)
T TIGR03169 8 GHTHALVLRR-WAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRRKV 86 (364)
T ss_pred cHHHHHHHHH-hcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccCEE
Confidence 5899999999 643 479999999987421 1000000111123444445556777789988765210
Q ss_pred ----C----ccchhhhccCCCCCC-------------------------------------------CCCCCCcchhhhh
Q psy12810 109 ----G----KDIAAKVTNHTPQSD-------------------------------------------NQTKHCPPLIVNI 137 (276)
Q Consensus 109 ----~----~~v~v~iiG~gp~~~-------------------------------------------g~~Gl~~A~~l~~ 137 (276)
+ -+..+..+|+.+..+ |.+|+++|..|++
T Consensus 87 ~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~ 166 (364)
T TIGR03169 87 LLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRR 166 (364)
T ss_pred EECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH
Confidence 0 011111234332211 2236666665553
Q ss_pred ----CC--cEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc----c-chhhhhcccCEEE
Q psy12810 138 ----VG--HSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD----I-AAKELYEEFDALL 206 (276)
Q Consensus 138 ----~G--~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~----~-~~~~~~~~~D~vV 206 (276)
.| .+|+++ ..+.+ ++ ..++++.....+.+++.||++++++.+..- + ..+..++++|.||
T Consensus 167 ~~~~~g~~~~V~li-~~~~~---l~------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi 236 (364)
T TIGR03169 167 RLPKRGLRGQVTLI-AGASL---LP------GFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAIL 236 (364)
T ss_pred HHHhcCCCceEEEE-eCCcc---cc------cCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEE
Confidence 23 367666 22221 11 245566677778899999999999876521 1 1123468999999
Q ss_pred EcCCCCCCC
Q psy12810 207 LCTGATWPR 215 (276)
Q Consensus 207 lAtG~~~p~ 215 (276)
+|+|.. |+
T Consensus 237 ~a~G~~-p~ 244 (364)
T TIGR03169 237 WATGAR-AP 244 (364)
T ss_pred EccCCC-hh
Confidence 999988 65
No 153
>KOG0404|consensus
Probab=98.56 E-value=3.3e-07 Score=74.44 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=106.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccC----CCCCceeeec-----CCCCCC---CHHHHHHHHHHHHhCCCeEEecccc--
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERN----DRVGGLLQYG-----IPTMKL---SKEVVQRRVKLLAAEGIEFKTNINV-- 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~----~~lGG~~~~~-----~~~~~~---~~~~~~~~~~~l~~~gv~~~~~~~v-- 108 (276)
.||+..||++ |++.-.+-+|||-. .-+|||+..- .|.|.. -.++.++..++-.+-|.++.+.+-.
T Consensus 17 GPAa~tAAiY-aaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEtVskv 95 (322)
T KOG0404|consen 17 GPAAHTAAIY-AARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIITETVSKV 95 (322)
T ss_pred CchHHHHHHH-HhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeeeeehhhc
Confidence 6999999999 99999999999962 2358888432 254433 3678888888888888877665210
Q ss_pred ----------------Cccchhh-------------------------------------------hccCCCCCCCCCCC
Q psy12810 109 ----------------GKDIAAK-------------------------------------------VTNHTPQSDNQTKH 129 (276)
Q Consensus 109 ----------------~~~v~v~-------------------------------------------iiG~gp~~~g~~Gl 129 (276)
..+-.|. +||+|.+ .+
T Consensus 96 ~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDs-----A~ 170 (322)
T KOG0404|consen 96 DLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDS-----AM 170 (322)
T ss_pred cccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHH-----HH
Confidence 0000000 2333444 67
Q ss_pred CcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHH-HhcCcEEEeeeeecc---------------cc
Q psy12810 130 CPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLL-AAEGIEFKTNINVGK---------------DI 193 (276)
Q Consensus 130 ~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~---------------~~ 193 (276)
+-|.+|.+.+.+|.++-|.+.+ +.++. ++++. +..+|++++|+.+.. ..
T Consensus 171 EEA~fLtkyaskVyii~Rrd~f-----------RAs~~----Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~ 235 (322)
T KOG0404|consen 171 EEALFLTKYASKVYIIHRRDHF-----------RASKI----MQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVK 235 (322)
T ss_pred HHHHHHHhhccEEEEEEEhhhh-----------hHHHH----HHHHHhcCCCeEEEechhhhhhccCcccccceEEEecc
Confidence 7788999999999999888764 23333 33333 345899999987641 12
Q ss_pred chhhhhcccCEEEEcCCCCCCCCCCCCC
Q psy12810 194 AAKELYEEFDALLLCTGATWPRDLPIPG 221 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~~p~~~~i~g 221 (276)
++++..++.+-++.|.|+. |+..-+.|
T Consensus 236 tge~~dl~v~GlFf~IGH~-Pat~~l~g 262 (322)
T KOG0404|consen 236 TGEETDLPVSGLFFAIGHS-PATKFLKG 262 (322)
T ss_pred cCcccccccceeEEEecCC-chhhHhcC
Confidence 4455678999999999998 87655444
No 154
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.52 E-value=3.6e-07 Score=83.55 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=62.4
Q ss_pred hccCCCCCCCCCCCCcchhhhh--------------CCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNI--------------VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI 181 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~--------------~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv 181 (276)
|+|+|+. |+++|..|+. .+.+|+++++.+.+. + ..++++.+...+.+++.||
T Consensus 178 VvGgG~~-----GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll---~------~~~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 178 VVGGGPT-----GVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL---G------SFDQALRKYGQRRLRRLGV 243 (424)
T ss_pred EECCCHH-----HHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc---c------cCCHHHHHHHHHHHHHCCC
Confidence 4566666 8888887764 378899999887642 1 2456777788888999999
Q ss_pred EEEeeeeeccc----c-chhhhhcccCEEEEcCCCCCCC
Q psy12810 182 EFKTNINVGKD----I-AAKELYEEFDALLLCTGATWPR 215 (276)
Q Consensus 182 ~i~~~~~v~~~----~-~~~~~~~~~D~vVlAtG~~~p~ 215 (276)
++++++.+..- + ..+..++++|.+|+++|.. |+
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~-~~ 281 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVG-PG 281 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCC-Cc
Confidence 99999877521 1 1123468999999999987 65
No 155
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.42 E-value=4.5e-07 Score=81.99 Aligned_cols=143 Identities=20% Similarity=0.290 Sum_probs=85.3
Q ss_pred hccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCccceeeeecCCCC----CCcHHHHHHHHHHHHhcCcEEEeeeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRVGGLLQYGIPTM----KLSKEVVQRRVKLLAAEGIEFKTNINV 189 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~l~~~gv~i~~~~~v 189 (276)
++|++++ |+.+|..+++. +.+++++...+... +.+..++.+ ....+..........+.++++++++.+
T Consensus 3 ivG~g~a-----G~~aa~~l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 76 (415)
T COG0446 3 IVGGGAA-----GLSAATTLRRLLLAAEITLIGREPKYS-YYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEV 76 (415)
T ss_pred EECCcHH-----HHHHHHHHHhcCCCCCEEEEeCCCCCC-CCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEE
Confidence 4899999 99999988874 46688787776542 222211111 011111111111124668999998776
Q ss_pred cc-c-----cchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCC
Q psy12810 190 GK-D-----IAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGG 263 (276)
Q Consensus 190 ~~-~-----~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG 263 (276)
.. + +......+.||++|+|||.+ |+.++ +....++++.....+. ...... ....++++|||+|
T Consensus 77 ~~id~~~~~v~~~~g~~~yd~LvlatGa~-~~~~~--~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~v~vvG~G 145 (415)
T COG0446 77 TSIDPENKVVLLDDGEIEYDYLVLATGAR-PRPPP--ISDWEGVVTLRLREDA-EALKGG-------AEPPKDVVVVGAG 145 (415)
T ss_pred EEecCCCCEEEECCCcccccEEEEcCCCc-ccCCC--ccccCceEEECCHHHH-HHHHHH-------HhccCeEEEECCc
Confidence 51 1 11112278899999999998 87766 3444555554332222 222111 1225899999999
Q ss_pred hHHHHHHHHhhc
Q psy12810 264 DTGCDCIATSLR 275 (276)
Q Consensus 264 ~~G~E~A~~~~r 275 (276)
..|+|+|..+.+
T Consensus 146 ~~gle~A~~~~~ 157 (415)
T COG0446 146 PIGLEAAEAAAK 157 (415)
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 156
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=9e-07 Score=81.91 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=72.2
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++++.| +|+|+. |+++|..|++.|.+|+++++.+++. + ..+.++...+.+.+++.||++++++.
T Consensus 174 ~~~vvI--IGgG~i-----g~E~A~~l~~~G~~Vtlie~~~~il-------~--~~d~~~~~~l~~~l~~~gV~i~~~~~ 237 (466)
T PRK06115 174 PKHLVV--IGAGVI-----GLELGSVWRRLGAQVTVVEYLDRIC-------P--GTDTETAKTLQKALTKQGMKFKLGSK 237 (466)
T ss_pred CCeEEE--ECCCHH-----HHHHHHHHHHcCCeEEEEeCCCCCC-------C--CCCHHHHHHHHHHHHhcCCEEEECcE
Confidence 455555 999999 9999999999999999999988752 1 24566777788889999999999986
Q ss_pred eccc----------c----chhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 189 VGKD----------I----AAKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 189 v~~~----------~----~~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
+..- . +++...+++|.|++|+|.. |+...+
T Consensus 238 V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-pn~~~l 281 (466)
T PRK06115 238 VTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR-PYTQGL 281 (466)
T ss_pred EEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc-cccccC
Confidence 6410 1 1123458899999999998 876543
No 157
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.29 E-value=5.6e-07 Score=62.39 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=54.1
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeec
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG 190 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 190 (276)
++|+|+. |+++|..|++.|.+|+++++.+.+. + ..+++....+.+.+++.||++++++.+.
T Consensus 4 ViGgG~i-----g~E~A~~l~~~g~~vtli~~~~~~~---~------~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 64 (80)
T PF00070_consen 4 VIGGGFI-----GIELAEALAELGKEVTLIERSDRLL---P------GFDPDAAKILEEYLRKRGVEVHTNTKVK 64 (80)
T ss_dssp EESSSHH-----HHHHHHHHHHTTSEEEEEESSSSSS---T------TSSHHHHHHHHHHHHHTTEEEEESEEEE
T ss_pred EECcCHH-----HHHHHHHHHHhCcEEEEEeccchhh---h------hcCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 4899999 9999999999999999999999752 1 4678888888999999999999999886
No 158
>PRK09897 hypothetical protein; Provisional
Probab=98.23 E-value=5.1e-06 Score=77.66 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVG 152 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~g 152 (276)
.|||+||+ |+.+|..|.+.+ .+|+|||+...+|
T Consensus 5 AIIGgGp~-----Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 5 AIVGAGPT-----GIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred EEECCcHH-----HHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 35999999 999999998755 4799999988776
No 159
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.22 E-value=1.7e-05 Score=72.12 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CCCCCCcc-hhhh----hCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc-------
Q psy12810 125 NQTKHCPP-LIVN----IVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD------- 192 (276)
Q Consensus 125 g~~Gl~~A-~~l~----~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~------- 192 (276)
+++|++.+ ..++ +.|.+|++++..+.. + ...++.+.+.+.+++.|+++++++.|..-
T Consensus 224 avIGle~a~~v~~~L~~~LG~~V~~vp~~pps-------l----pG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V 292 (422)
T PRK05329 224 AVLGLDDDAAVLAELEEALGCPVFELPTLPPS-------V----PGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRV 292 (422)
T ss_pred ceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-------C----chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEE
Confidence 78999998 6664 579999999887753 1 12356667778888999999999877520
Q ss_pred -----cchhhhhcccCEEEEcCCCC
Q psy12810 193 -----IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 193 -----~~~~~~~~~~D~vVlAtG~~ 212 (276)
..+.+..+.+|.||+|+|+.
T Consensus 293 ~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 293 TAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred EEEEeeCCceEEEECCEEEEeCCCc
Confidence 01223457899999999986
No 160
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.21 E-value=2.7e-06 Score=80.77 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
++|||+||+. |+++|++|+|+||.+.+||...+
T Consensus 18 G~aGl~AA~~-aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 18 GAGGLSAAIT-ARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CHHHHHHHHH-HHHcCCeEEEEecCCCCCCccce
Confidence 6999999999 99999999999999888886543
No 161
>PLN02507 glutathione reductase
Probab=98.21 E-value=1.7e-06 Score=80.63 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------c-ch
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------I-AA 195 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~-~~ 195 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+..- . ..
T Consensus 212 G~ig~E~A~~l~~~G~~Vtli~~~~~~l---~------~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~ 282 (499)
T PLN02507 212 GYIAVEFASIWRGMGATVDLFFRKELPL---R------GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITD 282 (499)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEecCCcC---c------ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEEC
Confidence 4459999999999999999999887631 1 256777777888899999999999876421 0 11
Q ss_pred hhhhcccCEEEEcCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+..++++|.|++|+|.. |+...
T Consensus 283 ~g~~i~~D~vl~a~G~~-pn~~~ 304 (499)
T PLN02507 283 HGEEFVADVVLFATGRA-PNTKR 304 (499)
T ss_pred CCcEEEcCEEEEeecCC-CCCCC
Confidence 22358899999999998 87654
No 162
>PLN02546 glutathione reductase
Probab=98.21 E-value=4.6e-06 Score=78.61 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=110.8
Q ss_pred ccchhchHHHHHhhCCCeEEEecc---------CCCCCceee-ecC-C----------------------------CCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFER---------NDRVGGLLQ-YGI-P----------------------------TMKL 83 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek---------~~~lGG~~~-~~~-~----------------------------~~~~ 83 (276)
+|||+.||+. |+++|++|+|+|+ ...+||+|. +|| | .+++
T Consensus 88 GpaG~~aA~~-aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~~~~~d~ 166 (558)
T PLN02546 88 GSGGVRASRF-ASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYETEPKHDW 166 (558)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCCCCCCCH
Confidence 6999999999 9999999999996 256999992 232 1 0111
Q ss_pred C------H----HHHHHHHHHHHhCCCeEEeccc--cCc------------cchhhhccCCCCCC---------------
Q psy12810 84 S------K----EVVQRRVKLLAAEGIEFKTNIN--VGK------------DIAAKVTNHTPQSD--------------- 124 (276)
Q Consensus 84 ~------~----~~~~~~~~~l~~~gv~~~~~~~--v~~------------~v~v~iiG~gp~~~--------------- 124 (276)
. + .+..++..++++.||+++.+.. ++. +..+..+|+.|..|
T Consensus 167 ~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~~~v~~~~~~l 246 (558)
T PLN02546 167 NTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAAL 246 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCChhhccCHHHHH
Confidence 1 0 1123444667788999987632 111 11111245544322
Q ss_pred --------------CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeec
Q psy12810 125 --------------NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG 190 (276)
Q Consensus 125 --------------g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 190 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.+.
T Consensus 247 ~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il---~------~~d~~~~~~l~~~L~~~GV~i~~~~~v~ 317 (558)
T PLN02546 247 DLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL---R------GFDEEVRDFVAEQMSLRGIEFHTEESPQ 317 (558)
T ss_pred hccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc---c------ccCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 5679999999999999999999887642 1 3567777778888999999999998654
Q ss_pred cc---------cchhhhh-cccCEEEEcCCCCCCCCCC
Q psy12810 191 KD---------IAAKELY-EEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 191 ~~---------~~~~~~~-~~~D~vVlAtG~~~p~~~~ 218 (276)
.- ...++.+ ..+|.||+|+|.. |+...
T Consensus 318 ~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~-Pnt~~ 354 (558)
T PLN02546 318 AIIKSADGSLSLKTNKGTVEGFSHVMFATGRK-PNTKN 354 (558)
T ss_pred EEEEcCCCEEEEEECCeEEEecCEEEEeeccc-cCCCc
Confidence 11 0011122 3489999999998 87653
No 163
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.19 E-value=1e-05 Score=71.48 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=86.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhCC-cEEEEEcCCCccceeeeecC--CC-------------------------------
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVG-HSVTVFERNDRVGGLLQYGI--PT------------------------------- 161 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G-~~Vtvie~~~~~gg~~~~~~--~~------------------------------- 161 (276)
-||-||+ -+..|..|...+ .+...+|+.+.. .|.-|+ |.
T Consensus 10 GIG~GPf-----NL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 10 GIGIGPF-----NLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred EEccCch-----HHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 4899999 788888887755 779999999876 332221 10
Q ss_pred ----------CCCcHHHHHHHHHHHHhcCcEEEeeeeec---c----------ccchhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 162 ----------MKLSKEVVQRRVKLLAAEGIEFKTNINVG---K----------DIAAKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 162 ----------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~---~----------~~~~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+..++.-.+...+|....--.+++++.|. . ..+.....+.+..||+.+|.. |..|+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~-P~IP~ 161 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQ-PYIPP 161 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCC-cCCCh
Confidence 00111111222233333334456666654 1 012222367889999999998 88775
Q ss_pred -CCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCCeEEEEcCChHHHHHHHHhh
Q psy12810 219 -IPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSL 274 (276)
Q Consensus 219 -i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k~vvVIGgG~~G~E~A~~~~ 274 (276)
+..+..+.++++.+++...... ...++|.|||+|-||.|+-..+.
T Consensus 162 ~f~~l~~~~vfHss~~~~~~~~~-----------~~~~~V~ViG~GQSAAEi~~~Ll 207 (436)
T COG3486 162 CFRSLIGERVFHSSEYLERHPEL-----------LQKRSVTVIGSGQSAAEIFLDLL 207 (436)
T ss_pred HHhCcCccceeehHHHHHhhHHh-----------hcCceEEEEcCCccHHHHHHHHH
Confidence 3334446799999988654432 23344999999999999876654
No 164
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.19 E-value=8.9e-07 Score=72.36 Aligned_cols=32 Identities=38% Similarity=0.399 Sum_probs=28.1
Q ss_pred ccchhchHHHHHhhCCCe-EEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHS-VTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~-V~l~Ek~~~lGG~~~ 75 (276)
+|+||++|.. |.++|.+ |+||||++.+||.+.
T Consensus 6 G~aGl~~a~~-l~~~g~~~v~v~e~~~~~Gg~w~ 38 (203)
T PF13738_consen 6 GPAGLAAAAH-LLERGIDPVVVLERNDRPGGVWR 38 (203)
T ss_dssp SHHHHHHHHH-HHHTT---EEEEESSSSSTTHHH
T ss_pred CHHHHHHHHH-HHhCCCCcEEEEeCCCCCCCeeE
Confidence 6999999999 8999999 999999999999884
No 165
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.15 E-value=2.7e-06 Score=79.04 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=61.9
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc---c-----c--c
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---D-----I--A 194 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----~--~ 194 (276)
|++|+++|..|++.|.+|+++++. .+ ++ ..++++...+.+.+++.||++++++.+.. . + .
T Consensus 189 G~iG~E~A~~l~~~G~~Vtli~~~-~~---l~------~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~ 258 (484)
T TIGR01438 189 SYVALECAGFLAGIGLDVTVMVRS-IL---LR------GFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFT 258 (484)
T ss_pred CHHHHHHHHHHHHhCCcEEEEEec-cc---cc------ccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEe
Confidence 344999999999999999999863 32 22 35677888888889999999999875431 0 1 1
Q ss_pred hh--hhhcccCEEEEcCCCCCCCCCC
Q psy12810 195 AK--ELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 195 ~~--~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+. ..++++|.||+|+|.. |+...
T Consensus 259 ~~~~~~~i~~D~vl~a~G~~-pn~~~ 283 (484)
T TIGR01438 259 DSTNGIEEEYDTVLLAIGRD-ACTRK 283 (484)
T ss_pred cCCcceEEEeCEEEEEecCC-cCCCc
Confidence 11 1358899999999998 88754
No 166
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.15 E-value=4.7e-06 Score=74.87 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=35.6
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
.+++.+ ||+|++ |+++|..|++.|++|+++|+++.+||.+
T Consensus 124 ~~svLV--IGGGvA-----GitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLV--IGGGVA-----GITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEE--EcCcHH-----HHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 455555 999999 9999999999999999999999999854
No 167
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.14 E-value=2.7e-06 Score=78.99 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=62.8
Q ss_pred CCCCCCcchhhhhC---CcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc---c----
Q psy12810 125 NQTKHCPPLIVNIV---GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI---A---- 194 (276)
Q Consensus 125 g~~Gl~~A~~l~~~---G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~---~---- 194 (276)
|++|+++|..|+.. |.+|+|+++.+.+. + ..++++...+.+.+++.||++++++.+..-. .
T Consensus 196 G~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~------~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~ 266 (486)
T TIGR01423 196 GFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---R------GFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKH 266 (486)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEecCCccc---c------ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEE
Confidence 55699999876554 99999999988752 1 3567788888888999999999998654110 0
Q ss_pred ---hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 195 ---AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 195 ---~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
.+..++++|.||+|+|.. |+...
T Consensus 267 v~~~~g~~i~~D~vl~a~G~~-Pn~~~ 292 (486)
T TIGR01423 267 VTFESGKTLDVDVVMMAIGRV-PRTQT 292 (486)
T ss_pred EEEcCCCEEEcCEEEEeeCCC-cCccc
Confidence 122358899999999998 87653
No 168
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.14 E-value=1.2e-05 Score=73.04 Aligned_cols=138 Identities=22% Similarity=0.185 Sum_probs=80.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee--------eecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchh
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL--------QYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~--------~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v 114 (276)
+||||.||+. |+++|++|+|+||++.+|+.+ ++... .......+++ + .+. ..+..
T Consensus 6 G~aGl~aAi~-aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~--~~~~~~~~~~-------~----~~~---~~~~~ 68 (400)
T TIGR00275 6 GAAGLMAAIT-AAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNS--CPTPEFVAYY-------P----RNG---KFLRS 68 (400)
T ss_pred eHHHHHHHHH-HHhcCCcEEEEecCccccccccccCCceEEccCC--CcchhHHHhc-------C----CCc---HHHHH
Confidence 6899999999 899999999999998888643 22211 1111111110 0 000 00000
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD-- 192 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~-- 192 (276)
....- . --++..++...|.+++..+.+. .+ |......++.+.+.+.+++.|+++++++.+..-
T Consensus 69 -~l~~~-~-----~~d~~~~~~~~Gv~~~~~~~g~----~~----p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~ 133 (400)
T TIGR00275 69 -ALSRF-S-----NKDLIDFFESLGLELKVEEDGR----VF----PCSDSAADVLDALLNELKELGVEILTNSKVKSIKK 133 (400)
T ss_pred -HHHhC-C-----HHHHHHHHHHcCCeeEEecCCE----eE----CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe
Confidence 00000 0 1123356677888887665322 11 111235677888888888999999999876421
Q ss_pred ------cchhhhhcccCEEEEcCCCC
Q psy12810 193 ------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 193 ------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+|.||+|+|..
T Consensus 134 ~~~~~~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 134 DDNGFGVETSGGEYEADKVILATGGL 159 (400)
T ss_pred cCCeEEEEECCcEEEcCEEEECCCCc
Confidence 11122357899999999986
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.14 E-value=1.7e-06 Score=80.95 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=30.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+|+||+||.. +.+.|++|++|||++.+||+|++
T Consensus 10 G~sGL~a~k~-l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 10 GPSGLAAAKN-LLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp SHHHHHHHHH-HHHTT-EEEEEESSSSSSGGGCH
T ss_pred cHHHHHHHHH-HHHCCCCCeEEecCCCCCccCee
Confidence 7999999999 78999999999999999999964
No 170
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.14 E-value=3e-06 Score=78.43 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=70.6
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++++.| +|+|+. |+++|..|++.|.+|+++++.+.+. + ..++++...+.+.+++.||++++++.
T Consensus 177 ~~~vvV--IGgG~i-----g~E~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~L~~~gV~i~~~~~ 240 (466)
T PRK07845 177 PEHLIV--VGSGVT-----GAEFASAYTELGVKVTLVSSRDRVL-------P--GEDADAAEVLEEVFARRGMTVLKRSR 240 (466)
T ss_pred CCeEEE--ECCCHH-----HHHHHHHHHHcCCeEEEEEcCCcCC-------C--CCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence 345555 899998 9999999999999999999988642 1 24566777778889999999999986
Q ss_pred eccc--------cc-hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 189 VGKD--------IA-AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 189 v~~~--------~~-~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+..- +. .+..++++|.|++|+|.. |+...
T Consensus 241 v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~-pn~~~ 278 (466)
T PRK07845 241 AESVERTGDGVVVTLTDGRTVEGSHALMAVGSV-PNTAG 278 (466)
T ss_pred EEEEEEeCCEEEEEECCCcEEEecEEEEeecCC-cCCCC
Confidence 5411 00 122357899999999998 87654
No 171
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.13 E-value=1.8e-06 Score=57.84 Aligned_cols=32 Identities=38% Similarity=0.443 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
.++||+||+. +++.|++|+||||++.+||.+.
T Consensus 5 G~sGl~aA~~-L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 5 GISGLAAAYY-LAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp SHHHHHHHHH-HHHTTSEEEEEESSSSSSGGGC
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCcccCccee
Confidence 5899999999 8999999999999999999874
No 172
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=2.8e-06 Score=78.79 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=70.2
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNIN 188 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 188 (276)
++++.| +|+|+. |+++|..|++.|.+||++++.+++. | ..++++...+.+.+++. +++++++.
T Consensus 174 ~~~vvI--iGgG~i-----G~E~A~~l~~~G~~Vtlv~~~~~il-------~--~~d~~~~~~~~~~l~~~-v~i~~~~~ 236 (471)
T PRK06467 174 PKRLLV--MGGGII-----GLEMGTVYHRLGSEVDVVEMFDQVI-------P--AADKDIVKVFTKRIKKQ-FNIMLETK 236 (471)
T ss_pred CCeEEE--ECCCHH-----HHHHHHHHHHcCCCEEEEecCCCCC-------C--cCCHHHHHHHHHHHhhc-eEEEcCCE
Confidence 455555 999999 9999999999999999999988742 1 35677777778888877 99999876
Q ss_pred eccc--------c--c---hhhhhcccCEEEEcCCCCCCCCCC
Q psy12810 189 VGKD--------I--A---AKELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 189 v~~~--------~--~---~~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+..- . . ++..++++|.||+|+|.. |+...
T Consensus 237 v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~-pn~~~ 278 (471)
T PRK06467 237 VTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV-PNGKL 278 (471)
T ss_pred EEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc-ccCCc
Confidence 6410 0 1 112358899999999998 88753
No 173
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.09 E-value=3.7e-06 Score=80.48 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHH-HhcCcEEEeeeeecc---c-----c--
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLL-AAEGIEFKTNINVGK---D-----I-- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~---~-----~-- 193 (276)
|++|+++|..|++.|.+||++++.+++. + ..+.++.....+.+ ++.||++++++.+.. + +
T Consensus 321 G~iGvE~A~~l~~~G~eVTLIe~~~~ll---~------~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v 391 (659)
T PTZ00153 321 GIIGLEFMDIYTALGSEVVSFEYSPQLL---P------LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVII 391 (659)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeccCccc---c------cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEE
Confidence 4459999999999999999999988752 1 24666666666654 568999999986641 0 0
Q ss_pred --c----h--h--------hhhcccCEEEEcCCCCCCCCCCC
Q psy12810 194 --A----A--K--------ELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 194 --~----~--~--------~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
. + . ..++++|.|++|+|.+ |+...+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~-Pnt~~L 432 (659)
T PTZ00153 392 GHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK-PNTNNL 432 (659)
T ss_pred EEeccccccccccccccccceEEEcCEEEEEECcc-cCCccC
Confidence 0 0 0 0258899999999998 887654
No 174
>KOG1336|consensus
Probab=98.07 E-value=1.2e-05 Score=72.15 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=67.6
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc-----------
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI----------- 193 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~----------- 193 (276)
|++|+++|..|...+++||+|++.+.+ + +. .....+.+.....+++.||+|++++.+..-.
T Consensus 222 G~ig~Evaa~l~~~~~~VT~V~~e~~~---~----~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~ 293 (478)
T KOG1336|consen 222 GFIGMEVAAALVSKAKSVTVVFPEPWL---L----PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK 293 (478)
T ss_pred hHHHHHHHHHHHhcCceEEEEccCccc---h----hh-hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE
Confidence 788999999999999999999998864 1 11 2445666777888999999999999875210
Q ss_pred chhhhhcccCEEEEcCCCCCCCCCCCC
Q psy12810 194 AAKELYEEFDALLLCTGATWPRDLPIP 220 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~~p~~~~i~ 220 (276)
..+..++++|.||+.+|.+ |+...+.
T Consensus 294 l~dg~~l~adlvv~GiG~~-p~t~~~~ 319 (478)
T KOG1336|consen 294 LKDGKTLEADLVVVGIGIK-PNTSFLE 319 (478)
T ss_pred eccCCEeccCeEEEeeccc-ccccccc
Confidence 1223468999999999998 9888765
No 175
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.04 E-value=4.7e-06 Score=70.94 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=65.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcccee-ee--------------------ecCCC-------CC-C
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL-LQ--------------------YGIPT-------MK-L 164 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~-~~--------------------~~~~~-------~~-~ 164 (276)
+.|+|+||+ |+.+|..|++.|.+|+|+|+.+.+||- |. ++++. +. .
T Consensus 28 VvIVGgGpA-----Gl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd 102 (257)
T PRK04176 28 VAIVGAGPS-----GLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVAD 102 (257)
T ss_pred EEEECccHH-----HHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceecc
Confidence 334999999 999999999999999999999877542 21 01110 11 1
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc---ccc-------------------hhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK---DIA-------------------AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~---~~~-------------------~~~~~~~~D~vVlAtG~~ 212 (276)
+.++...+.+...+.|+++++++.+.. +.. .+..++.++.||.|||+.
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 234556667777888999999987641 001 012357899999999986
No 176
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=97.99 E-value=9.2e-07 Score=64.99 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=25.4
Q ss_pred cchhH--HHhhhhhhccccccceeeccccchhcccccccc
Q psy12810 2 IWDHQ--LEKRLDNTLIQECEPVLSGKVPRIDLEYTINNE 39 (276)
Q Consensus 2 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (276)
||||| ||.+|.|+ .+ +||+|+.|+||++|...+++
T Consensus 74 vCp~p~~Ce~~C~r~-~~--~pV~I~~l~r~~~d~~~~~~ 110 (111)
T PF14691_consen 74 VCPHPKQCESACRRG-KG--EPVAIRALERFIADYALEEG 110 (111)
T ss_dssp H--GGGSGGGG-GGG-ST---S--HHHHHHHHHHHHHHHT
T ss_pred CCCCcchHHHHccCC-CC--CCCcHHHHHHHHHHHHHHcC
Confidence 89999 99999999 55 89999999999999877653
No 177
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.98 E-value=1.2e-05 Score=65.43 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=63.1
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeee--------------------cCCCC--------CCcH
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQY--------------------GIPTM--------KLSK 166 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~--------------------~~~~~--------~~~~ 166 (276)
|+|+||+ |+++|++|++.|.+|+|||+...+|| .|.- ++++. ..+.
T Consensus 35 IVGaGPs-----GLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 35 IVGAGPS-----GLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred EECcCcc-----hHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4999999 99999999999999999999998854 5531 12211 1123
Q ss_pred HHHHHHHHHHHhcCcEEEeeeeec----c----------ccc--------hhhhhcccCEEEEcCCCC
Q psy12810 167 EVVQRRVKLLAAEGIEFKTNINVG----K----------DIA--------AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 167 ~~~~~~~~~l~~~gv~i~~~~~v~----~----------~~~--------~~~~~~~~D~vVlAtG~~ 212 (276)
++...+.....+.|.++..++.++ + +++ -+...++++.||=|||+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 344445555667788888777664 0 000 122367899999999985
No 178
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.94 E-value=4.3e-05 Score=69.53 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeeccc---------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGKD---------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~~---------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|+++++++.|+.- +..+..++.+|.||+|+|.+
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcc
Confidence 3456667777788899999998776521 11123357899999999986
No 179
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.93 E-value=1.3e-05 Score=73.91 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=58.5
Q ss_pred CCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc--------cc-h
Q psy12810 125 NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD--------IA-A 195 (276)
Q Consensus 125 g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~-~ 195 (276)
|++|+++|..|++.|.+|+++++.+.+. + ..++++...+.+ +.+.++++++++.+..- +. .
T Consensus 178 G~ig~E~A~~l~~~G~~Vtli~~~~~ll---~------~~d~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~ 247 (452)
T TIGR03452 178 GYIAAEFAHVFSALGTRVTIVNRSTKLL---R------HLDEDISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLD 247 (452)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEccCccc---c------ccCHHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence 3349999999999999999999988642 1 245555555544 33568999998766411 00 1
Q ss_pred hhhhcccCEEEEcCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+..++++|.|++|+|.+ |+...
T Consensus 248 ~g~~i~~D~vl~a~G~~-pn~~~ 269 (452)
T TIGR03452 248 DGSTVTADVLLVATGRV-PNGDL 269 (452)
T ss_pred CCCEEEcCEEEEeeccC-cCCCC
Confidence 12358899999999998 87654
No 180
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.91 E-value=9.6e-06 Score=69.90 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=63.9
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee-------------------------------------e
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ-------------------------------------Y 157 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~-------------------------------------~ 157 (276)
.|||+||+ |+.+|..|++.|.+|+|+|+.+..+..+. .
T Consensus 4 ~IiGaG~a-----Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 4 VVVGAGPA-----GASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 35999999 99999999999999999999876432110 0
Q ss_pred cCCC---CCCc-HHHHHHHHHHHHhcCcEEEeeeeecc---c-------cchhhhhcccCEEEEcCCCC
Q psy12810 158 GIPT---MKLS-KEVVQRRVKLLAAEGIEFKTNINVGK---D-------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 158 ~~~~---~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~---~-------~~~~~~~~~~D~vVlAtG~~ 212 (276)
..+. +..+ .++.+.+.+.+.+.|++++.++.+.. + .+++..++.+|.||.|+|.+
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 0000 0112 24555666777788999999887652 1 11223467899999999986
No 181
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4.2e-05 Score=66.28 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=59.5
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHh-cCcEEEeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAA-EGIEFKTNI 187 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~i~~~~ 187 (276)
++++.+ ||+|-+ |.++|..|+-.=..||++|=.+.+ +.+. .+++.+.. .++++.+|.
T Consensus 354 gK~VAV--IGGGNS-----GvEAAIDLAGiv~hVtllEF~~eL-----------kAD~----VLq~kl~sl~Nv~ii~na 411 (520)
T COG3634 354 GKRVAV--IGGGNS-----GVEAAIDLAGIVEHVTLLEFAPEL-----------KADA----VLQDKLRSLPNVTIITNA 411 (520)
T ss_pred CceEEE--ECCCcc-----hHHHHHhHHhhhheeeeeecchhh-----------hhHH----HHHHHHhcCCCcEEEecc
Confidence 455555 888888 999999998877889999866543 1222 23344444 489999986
Q ss_pred eecc--------------c-cchhhhhcccCEEEEcCCCCCCCCCCCCC
Q psy12810 188 NVGK--------------D-IAAKELYEEFDALLLCTGATWPRDLPIPG 221 (276)
Q Consensus 188 ~v~~--------------~-~~~~~~~~~~D~vVlAtG~~~p~~~~i~g 221 (276)
.-+. + .++++..+.-+-|++-.|-. ||+..+.|
T Consensus 412 ~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~-PNT~WLkg 459 (520)
T COG3634 412 QTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLL-PNTEWLKG 459 (520)
T ss_pred eeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecc-cChhHhhc
Confidence 5431 0 12333456677899999987 88765544
No 182
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.79 E-value=2e-05 Score=66.94 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=65.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeee--------------------cCCCC--------CC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQY--------------------GIPTM--------KL 164 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~--------------------~~~~~--------~~ 164 (276)
+.|||+||+ |+.+|..|++.|.+|+|+|+.+.+|+ .|.. +++.. ..
T Consensus 24 VvIVGgGpA-----GL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~ 98 (254)
T TIGR00292 24 VIIVGAGPS-----GLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD 98 (254)
T ss_pred EEEECCCHH-----HHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence 344999999 99999999999999999999988753 2211 11110 01
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-----c---cch---------------hhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-----D---IAA---------------KELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-----~---~~~---------------~~~~~~~D~vVlAtG~~ 212 (276)
..++...+.+.+.+.|++++.++.+.. + +.+ +...+.++.||.|||+.
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 234566667777888999998887641 0 000 12467899999999975
No 183
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.78 E-value=0.00014 Score=66.06 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCcEEEeeeeecc-c-------c--chh----hhhcccCEEEEcCCCC
Q psy12810 166 KEVVQRRVKLLAAEGIEFKTNINVGK-D-------I--AAK----ELYEEFDALLLCTGAT 212 (276)
Q Consensus 166 ~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~--~~~----~~~~~~D~vVlAtG~~ 212 (276)
..+...+.+.+.+.|+++++++.|.. . . ... ..++.+|.||+|+|.+
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 45666777888889999999877641 0 0 111 1257899999999987
No 184
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.77 E-value=7.6e-05 Score=67.99 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+.|||.||+. |+++|.+|+|+||.+.+||...+
T Consensus 8 G~AGl~AA~~-Aae~G~~V~lvek~~~~gg~~~~ 40 (417)
T PF00890_consen 8 GLAGLAAAIE-AAEAGAKVLLVEKGPRLGGSSAF 40 (417)
T ss_dssp SHHHHHHHHH-HHHTTT-EEEEESSSGGGSGGGG
T ss_pred CHHHHHHHHH-HhhhcCeEEEEEeeccccccccc
Confidence 5799999999 99999999999999988886543
No 185
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.73 E-value=2.3e-05 Score=70.85 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=67.7
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeec-cc--
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG-KD-- 192 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~-~~-- 192 (276)
++|+|+. |+++|..+++.|++|+++|+.+++++... . +++...+.+.+++.||++++++.+. .+
T Consensus 141 vvG~G~~-----gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 141 VVGAGPI-----GLEAAEAAAKRGKKVTLIEAADRLGGQLL-------D-PEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred EECCcHH-----HHHHHHHHHHcCCeEEEEEcccccchhhh-------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 3788888 99999999999999999999998764321 0 5677778888999999999998754 11
Q ss_pred ---------cchhhhhcccCEEEEcCCCCCCC
Q psy12810 193 ---------IAAKELYEEFDALLLCTGATWPR 215 (276)
Q Consensus 193 ---------~~~~~~~~~~D~vVlAtG~~~p~ 215 (276)
.......+++|.+++++|.+ |+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~-p~ 238 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGER-PN 238 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccc-cc
Confidence 22233457899999999998 75
No 186
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.71 E-value=5.7e-06 Score=55.40 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=32.5
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
|||+|++ |+.+|..|++.|++|+|+|+.+.+||.+.
T Consensus 1 IiGaG~s-----Gl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGIS-----GLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHH-----HHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHH-----HHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 4899999 99999999999999999999999998665
No 187
>KOG1346|consensus
Probab=97.71 E-value=4.4e-05 Score=67.61 Aligned_cols=89 Identities=20% Similarity=0.354 Sum_probs=54.0
Q ss_pred hcCcEEEeeeeecc-cc------chhhhhcccCEEEEcCCCCCCCCCCCCCc---CCC-CeeehHHHHHHHHHhhcCCCC
Q psy12810 178 AEGIEFKTNINVGK-DI------AAKELYEEFDALLLCTGATWPRDLPIPGR---QLS-GIYFAMSFLESWQKKQMGNEN 246 (276)
Q Consensus 178 ~~gv~i~~~~~v~~-~~------~~~~~~~~~D~vVlAtG~~~p~~~~i~g~---~~~-gv~~~~~~l~~~~~~~~~~~~ 246 (276)
.-||-+..+.++.. +. -.+..++.||.++||||.+ |..++.-.. +.. .+... .+..++..+...
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~-Pk~l~~~~~A~~evk~kit~f-r~p~DF~rlek~--- 343 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVR-PKKLQVFEEASEEVKQKITYF-RYPADFKRLEKG--- 343 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcC-cccchhhhhcCHHhhhheeEE-ecchHHHHHHHh---
Confidence 34677777766541 11 2234578999999999998 877654221 111 11111 112333333221
Q ss_pred CCCCCCCCCeEEEEcCChHHHHHHHHhhc
Q psy12810 247 VSPISAKDKNVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 247 ~~~~~~~~k~vvVIGgG~~G~E~A~~~~r 275 (276)
...-++|.|||+|+.|.|+|..+.|
T Consensus 344 ----~aek~siTIiGnGflgSELacsl~r 368 (659)
T KOG1346|consen 344 ----LAEKQSITIIGNGFLGSELACSLKR 368 (659)
T ss_pred ----hhhcceEEEEcCcchhhhHHHHHHH
Confidence 1344899999999999999998876
No 188
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.70 E-value=0.00016 Score=64.96 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|++++.++.|..- +.....++.+|.||+|+|.+
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 4456666777788889999998876410 11122357899999999986
No 189
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.68 E-value=0.00027 Score=66.14 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=28.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||+||+. |++.|.+|+|+||.+.+||..
T Consensus 70 G~AGl~AAi~-Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 70 GGAGMSAAIE-AKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred CHHHHHHHHH-HHHCCCCEEEEECCCCCCCcc
Confidence 5899999999 999999999999999888854
No 190
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.68 E-value=5.7e-05 Score=66.70 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-c--------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-D--------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-~--------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|+++++++.|.. + +......+.+|.||+|+|.+
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAW 202 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGG
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEeccccc
Confidence 467788888888999999999988751 1 22333358899999999986
No 191
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.62 E-value=0.00047 Score=61.64 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHhc-CcEEEeeeeeccc----cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAE-GIEFKTNINVGKD----IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~-gv~i~~~~~v~~~----~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+. |+++++++.|..- +......+.+|.||+|+|.+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGDVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCcEEeCEEEECCCCC
Confidence 445666676766665 9999998876421 11122246799999999986
No 192
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.62 E-value=6.1e-05 Score=68.28 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=65.0
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeee-------c----CC--------------------
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQY-------G----IP-------------------- 160 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~-------~----~~-------------------- 160 (276)
+.+.|+|+||+ |+.+|..|++.|.+|.|+|+.+.+|.-... . .+
T Consensus 4 ~DVvIVGaGPA-----Gs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~ 78 (396)
T COG0644 4 YDVVIVGAGPA-----GSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE 78 (396)
T ss_pred eeEEEECCchH-----HHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence 34455999999 999999999999999999998876531110 0 00
Q ss_pred ----------CCCCcH-HHHHHHHHHHHhcCcEEEeeeeeccccc----------hhhhhcccCEEEEcCCCC
Q psy12810 161 ----------TMKLSK-EVVQRRVKLLAAEGIEFKTNINVGKDIA----------AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 161 ----------~~~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~~~~----------~~~~~~~~D~vVlAtG~~ 212 (276)
.+..++ .+-+.+.+...+.|++++.++.+..... ....++.++.||.|.|..
T Consensus 79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 011112 2333456677788999999998762111 111367899999999975
No 193
>KOG2755|consensus
Probab=97.59 E-value=0.00019 Score=59.99 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred hccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCc----------EE
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI----------EF 183 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv----------~i 183 (276)
++|+|-+ |.++|++|+.. ..++.++..++.+-..-+| ...-+++.+..| +|
T Consensus 4 vvgggia-----gvscaeqla~~~psa~illitass~vksvtn~------------~~i~~ylekfdv~eq~~~elg~~f 66 (334)
T KOG2755|consen 4 VVGGGIA-----GVSCAEQLAQLEPSAEILLITASSFVKSVTNY------------QKIGQYLEKFDVKEQNCHELGPDF 66 (334)
T ss_pred EEcCccc-----cccHHHHHHhhCCCCcEEEEeccHHHHHHhhH------------HHHHHHHHhcCccccchhhhcccH
Confidence 4899999 99999999864 5678888877754211111 001111111111 11
Q ss_pred E--------eeeeeccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCCeeehHHHHHHHHHhhcCCCCCCCCCCCCC
Q psy12810 184 K--------TNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDK 255 (276)
Q Consensus 184 ~--------~~~~v~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~k 255 (276)
. .++.-..-.+.....+.|++|++++|.+ |...- .+.+ +.|..-++. ++.+.++. .+.+.|
T Consensus 67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~k-Pklq~-E~~n-~~Iv~irDt-DsaQllq~-------kl~kaK 135 (334)
T KOG2755|consen 67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYK-PKLQV-EGIN-PKIVGIRDT-DSAQLLQC-------KLVKAK 135 (334)
T ss_pred HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCC-cceee-cCCC-ceEEEEecC-cHHHHHHH-------HHhhcc
Confidence 1 0000000012233467899999999998 76432 2222 334432221 11111111 136789
Q ss_pred eEEEEcCChHHHHHHHHhhc
Q psy12810 256 NVIVIGGGDTGCDCIATSLR 275 (276)
Q Consensus 256 ~vvVIGgG~~G~E~A~~~~r 275 (276)
+|.++|.|-+++|++.+++-
T Consensus 136 ~VlilgnGgia~El~yElk~ 155 (334)
T KOG2755|consen 136 IVLILGNGGIAMELTYELKI 155 (334)
T ss_pred eEEEEecCchhHHHHHHhhc
Confidence 99999999999999988763
No 194
>KOG1800|consensus
Probab=97.59 E-value=0.00016 Score=63.48 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=60.0
Q ss_pred ccchhchHHHHHhh-CCCeEEEeccCCCCCceeeecC-CCCCCCHHHHHHHHHHHHhCCCeEEeccccCccchh
Q psy12810 43 FTATLSYHISIQHL-VGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114 (276)
Q Consensus 43 ~paGl~aA~~~aa~-~G~~V~l~Ek~~~lGG~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~v 114 (276)
+|||+-+|..|+++ .+.+|+||||.+.++|+.+||. |.-..-+..++.+.+.++.....|..|..+|.++.+
T Consensus 29 GPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~dvsl 102 (468)
T KOG1800|consen 29 GPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDVSL 102 (468)
T ss_pred CchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecccccH
Confidence 79999999997664 6799999999999999999996 666666888888888888777788888777665554
No 195
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.57 E-value=4.1e-05 Score=62.48 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=55.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce-eeeec--------------------CCC-------C-CC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG-LLQYG--------------------IPT-------M-KL 164 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg-~~~~~--------------------~~~-------~-~~ 164 (276)
+.|+|+||+ |+.+|.+|++.|.+|.+||+...+|| .|.-+ +++ + ..
T Consensus 20 V~IVGaGpa-----Gl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d 94 (230)
T PF01946_consen 20 VAIVGAGPA-----GLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD 94 (230)
T ss_dssp EEEE--SHH-----HHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred EEEECCChh-----HHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence 344999999 99999999999999999999988865 33211 111 0 11
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeec----cc----------c--------chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVG----KD----------I--------AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~----~~----------~--------~~~~~~~~~D~vVlAtG~~ 212 (276)
+.+....+.....+.|+++...+.++ ++ + .-+...+.+..||=|||+.
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 22344445555566899888877764 11 0 0122367889999999986
No 196
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00025 Score=65.17 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.5
Q ss_pred ccchhchHHHHHhhCCCe-EEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHS-VTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~-V~l~Ek~~~lGG~~~~ 76 (276)
+++||++|+. |.++|.. ++||||++.+||++++
T Consensus 17 G~sGlaaa~~-L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 17 GQSGLAAAYA-LKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred CHHHHHHHHH-HHHcCCCcEEEEEccCCcCCcchh
Confidence 7999999999 8999999 9999999999999743
No 197
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.52 E-value=0.00016 Score=67.29 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=62.6
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeee
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 189 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v 189 (276)
+.+.+ +|+|+. |+++|..|+++|++|+++|+.+.. ......+.+++.|++++++..+
T Consensus 17 ~~v~v--iG~G~~-----G~~~A~~L~~~G~~V~~~d~~~~~----------------~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 17 LRVVV--AGLGVS-----GFAAADALLELGARVTVVDDGDDE----------------RHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CEEEE--ECCCHH-----HHHHHHHHHHCCCEEEEEeCCchh----------------hhHHHHHHHHHcCCEEEECCCc
Confidence 44444 999999 999999999999999999976531 1123445577889999988654
Q ss_pred ccccchhhhhcccCEEEEcCCCCCCCCCCCCCcCCCC
Q psy12810 190 GKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSG 226 (276)
Q Consensus 190 ~~~~~~~~~~~~~D~vVlAtG~~~p~~~~i~g~~~~g 226 (276)
. ....+|.||+++|.. |+.+.+......|
T Consensus 74 ~-------~~~~~D~Vv~s~Gi~-~~~~~~~~a~~~g 102 (480)
T PRK01438 74 T-------LPEDTDLVVTSPGWR-PDAPLLAAAADAG 102 (480)
T ss_pred c-------ccCCCCEEEECCCcC-CCCHHHHHHHHCC
Confidence 2 235699999999998 8877544433334
No 198
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.51 E-value=0.0006 Score=61.12 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeeccc--------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGKD--------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|++++.++.++.- +..+...+.+|.||+|+|.+
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~ 203 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcc
Confidence 3456666667777889999998876411 11122367899999999987
No 199
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.51 E-value=0.00031 Score=63.62 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-c-------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-D-------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|+++++++.+.. . +.....++.+|.||+|+|.+
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~ 203 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLM 203 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcc
Confidence 456777788888889999999877641 1 11122357899999999987
No 200
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.50 E-value=0.00011 Score=69.58 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=29.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
.++||+||+. |++.|++|+|+||.+.+||.+..
T Consensus 16 G~aG~~aA~~-aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 16 GAAGMVAALT-AAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CHHHHHHHHH-HHHCCCCEEEEeCCCCCCccccc
Confidence 6899999999 89999999999999888886643
No 201
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.50 E-value=0.00036 Score=64.60 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=27.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC--CCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR--VGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~--lGG~~ 74 (276)
++||++||+. |++.|.+|+|+||.+. .||..
T Consensus 13 G~aGl~AA~~-aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 13 GNAALCAALA-AREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeCCCCcCCCccc
Confidence 6899999999 8999999999999864 67754
No 202
>PRK06847 hypothetical protein; Provisional
Probab=97.49 E-value=0.00016 Score=64.88 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=62.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccc----e---------------eee--------------e---
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVG----G---------------LLQ--------------Y--- 157 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~g----g---------------~~~--------------~--- 157 (276)
|.|||+||+ |+.+|..|++.|.+|+|+|+.+... | ++. +
T Consensus 7 V~IVGaG~a-----Gl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 7 VLIVGGGIG-----GLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 345999999 9999999999999999999876421 0 000 0
Q ss_pred c-----CCC-------C----CC-cHHHHHHHHHHHHhcCcEEEeeeeecc-c-------c-chhhhhcccCEEEEcCCC
Q psy12810 158 G-----IPT-------M----KL-SKEVVQRRVKLLAAEGIEFKTNINVGK-D-------I-AAKELYEEFDALLLCTGA 211 (276)
Q Consensus 158 ~-----~~~-------~----~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~-~~~~~~~~~D~vVlAtG~ 211 (276)
+ .+. + .. ..++.+.+.+.+.+.|+++++++.+.. . + ..+..++.+|.||.|+|.
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCC
Confidence 0 000 0 00 134455566667778999999977641 1 0 112235789999999998
Q ss_pred C
Q psy12810 212 T 212 (276)
Q Consensus 212 ~ 212 (276)
+
T Consensus 162 ~ 162 (375)
T PRK06847 162 Y 162 (375)
T ss_pred C
Confidence 6
No 203
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.49 E-value=0.00033 Score=64.39 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=28.5
Q ss_pred ccchhchHHHHHhhCC-CeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVG-HSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G-~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||+||+. |+++| .+|+|+||.+..||...
T Consensus 8 G~AGl~AA~~-aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 8 GFAGLSAALS-AKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CHHHHHHHHH-HHHcCCccEEEEecCCCCCCccc
Confidence 5799999999 99999 99999999988887653
No 204
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.48 E-value=0.0001 Score=67.51 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.6
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
..+.|||+||+ |+.+|..|++.|++|+|+|+.+.+
T Consensus 6 ~DViIVGaGpA-----G~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 6 FDAIIVGAGLA-----GSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred CcEEEECcCHH-----HHHHHHHHHhCCCeEEEEEcCCCC
Confidence 34445999999 999999999999999999998754
No 205
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.47 E-value=0.00038 Score=66.30 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+++||.||+. |++.|++|+|+||++.+||.+.+
T Consensus 21 G~aG~~aa~~-~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 21 GAAGLSAAVT-AAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCccccc
Confidence 6899999999 89999999999999888987653
No 206
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.45 E-value=0.0004 Score=63.69 Aligned_cols=154 Identities=15% Similarity=0.065 Sum_probs=77.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC--CCceeeecCC---CCCCCHHH------HHHHHHHHHhCCCeEEeccccCcc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR--VGGLLQYGIP---TMKLSKEV------VQRRVKLLAAEGIEFKTNINVGKD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~--lGG~~~~~~~---~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~~ 111 (276)
+.||+.||+. |++.|.+|+|+||.+. .||....+.- ........ .+...+.+.+.+ +.....+
T Consensus 5 G~AGl~AA~~-Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~ 78 (432)
T TIGR02485 5 GLAGLCAAIE-ARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVT-----GGRTNES 78 (432)
T ss_pred cHHHHHHHHH-HHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhh-----CCCCCHH
Confidence 5789999999 9999999999999874 5775543210 00000000 011112221110 0001111
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 191 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 191 (276)
+.-..+.. ..++...|.+.|.+........... ..+...+ ......+...+.+.+++.|+++++++.++.
T Consensus 79 l~~~~~~~--------s~~~i~wl~~~Gv~f~~~~~g~~~~-~~~~~~~-~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~ 148 (432)
T TIGR02485 79 LSRLGIGR--------GSRDLRWAFAHGVHLQPPAAGNLPY-SRRTAFL-RGGGKALTNALYSSAERLGVEIRYGIAVDR 148 (432)
T ss_pred HHHHHHhc--------chhHHHHHHhCCceeeecCCCCccc-cCceeee-cCCHHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 11101111 1122355666676654322111000 0000001 012356777788888899999999987642
Q ss_pred ---cc-c---------hhhhhcccCEEEEcCCCC
Q psy12810 192 ---DI-A---------AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 192 ---~~-~---------~~~~~~~~D~vVlAtG~~ 212 (276)
+. . ++...+.++.||+|||..
T Consensus 149 l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 149 IPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred EEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 10 0 112356789999999954
No 207
>PLN02661 Putative thiazole synthesis
Probab=97.41 E-value=0.00015 Score=63.92 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=30.9
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhC-CcEEEEEcCCCccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIV-GHSVTVFERNDRVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~-G~~Vtvie~~~~~gg 153 (276)
.+.|+|+|++ |+.+|..|++. |.+|+++|+...+||
T Consensus 94 DVlIVGaG~A-----Gl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 94 DVVIVGAGSA-----GLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred CEEEECCHHH-----HHHHHHHHHHcCCCeEEEEecCccccc
Confidence 3445999999 99999999975 899999999888755
No 208
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.40 E-value=0.00016 Score=65.16 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=59.7
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeec-----C---------------------CCC-------
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYG-----I---------------------PTM------- 162 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~-----~---------------------~~~------- 162 (276)
|||+||+ |+.+|..|++.|.+|+|+|+.+.+++...++ + +..
T Consensus 4 IiGaG~A-----Gl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 4 VIGGGPA-----GLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred EECCCHH-----HHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 4999999 9999999999999999999887665321111 0 000
Q ss_pred --CC-cHHHHHHHHHHHHhcCcEEEeeeeecccc--------c-hhhhhcccCEEEEcCCCC
Q psy12810 163 --KL-SKEVVQRRVKLLAAEGIEFKTNINVGKDI--------A-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 163 --~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~~~--------~-~~~~~~~~D~vVlAtG~~ 212 (276)
.. ...+.+.+.+.+.+.|++++......... . .+..++.+|.||.|+|..
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence 01 13344556666677788886543322111 1 112367899999999976
No 209
>PLN02529 lysine-specific histone demethylase 1
Probab=97.40 E-value=0.00017 Score=69.93 Aligned_cols=69 Identities=19% Similarity=0.114 Sum_probs=50.8
Q ss_pred hHHHhhhhhhccccccceeeccccchhccccc---cccccc---ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 5 HQLEKRLDNTLIQECEPVLSGKVPRIDLEYTI---NNECRA---FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
.+|-.+|.+-... .+.|+.+-+++.....++ .+++-. +||||+||+. |+++||+|+|+|+++++||.+.
T Consensus 126 ~~ci~~c~~~l~~-~~~inc~vnp~~~~~~~~~~~~~~v~viGaG~aGl~aA~~-l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 126 EHLISAAYDFLLY-NGYINFGVSPSFASPIPEEGTEGSVIIVGAGLAGLAAARQ-LLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred HHHHHHHHHHHHh-CCCcceeecccccCCCCcccCCCCEEEECcCHHHHHHHHH-HHHcCCcEEEEecCccCcCcee
Confidence 5788888876644 266777777766532221 222222 6999999999 8999999999999999999874
No 210
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.38 E-value=0.001 Score=63.09 Aligned_cols=166 Identities=18% Similarity=0.082 Sum_probs=99.7
Q ss_pred ccchhchHHHHHhh--CCCeEEEeccCCCCCc---eeeecCCCCCCCHHHHHHHHHHHHhCCCeEEeccccC------cc
Q psy12810 43 FTATLSYHISIQHL--VGHSVTVFERNDRVGG---LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVG------KD 111 (276)
Q Consensus 43 ~paGl~aA~~~aa~--~G~~V~l~Ek~~~lGG---~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~------~~ 111 (276)
.+||..+...++.. .=+++|+|=..+++.= .++-..++.+...++.-....+.+++||+++++..+. +.
T Consensus 12 Gmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~ 91 (793)
T COG1251 12 GMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKV 91 (793)
T ss_pred ccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcce
Confidence 35566665553222 3468999977664330 0111123323333444333467788999999886430 00
Q ss_pred c------------hhhhccCCCCCC-------------------------------------CCCCCCcchhhhhCCcEE
Q psy12810 112 I------------AAKVTNHTPQSD-------------------------------------NQTKHCPPLIVNIVGHSV 142 (276)
Q Consensus 112 v------------~v~iiG~gp~~~-------------------------------------g~~Gl~~A~~l~~~G~~V 142 (276)
+ .+...|+-|..+ |..|+++|.-|...|.+|
T Consensus 92 V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~ 171 (793)
T COG1251 92 VTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEV 171 (793)
T ss_pred EEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCce
Confidence 0 011234433322 667999999999999999
Q ss_pred EEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecccc---------chhhhhcccCEEEEcCCCCC
Q psy12810 143 TVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI---------AAKELYEEFDALLLCTGATW 213 (276)
Q Consensus 143 tvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~---------~~~~~~~~~D~vVlAtG~~~ 213 (276)
++++..+.+. -+ .+++.--..+.+.+.+.|+++++++....-. ......+++|.||.|+|-+
T Consensus 172 ~Vvh~~~~lM--er------QLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr- 242 (793)
T COG1251 172 TVVHIAPTLM--ER------QLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR- 242 (793)
T ss_pred EEEeecchHH--HH------hhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc-
Confidence 9999888641 11 3444444456667888999999987653111 1122357899999999998
Q ss_pred CCCC
Q psy12810 214 PRDL 217 (276)
Q Consensus 214 p~~~ 217 (276)
|+.-
T Consensus 243 Pn~e 246 (793)
T COG1251 243 PNDE 246 (793)
T ss_pred cccH
Confidence 8753
No 211
>KOG2495|consensus
Probab=97.36 E-value=0.00029 Score=62.74 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=68.4
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhh--------------CCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHH
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNI--------------VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLA 177 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~--------------~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~ 177 (276)
+.++++|+||. |.|+|..|+. .-.+||++|..+.+ ++ ..++.+..+..+.+.
T Consensus 219 Lh~VVVGGGPT-----GVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i---L~------mFdkrl~~yae~~f~ 284 (491)
T KOG2495|consen 219 LHFVVVGGGPT-----GVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI---LN------MFDKRLVEYAENQFV 284 (491)
T ss_pred EEEEEECCCCc-----ceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH---HH------HHHHHHHHHHHHHhh
Confidence 34556999999 9999987753 34679999998874 22 357778888889999
Q ss_pred hcCcEEEeeeeecc---------ccchhhhhcccCEEEEcCCCCCCC
Q psy12810 178 AEGIEFKTNINVGK---------DIAAKELYEEFDALLLCTGATWPR 215 (276)
Q Consensus 178 ~~gv~i~~~~~v~~---------~~~~~~~~~~~D~vVlAtG~~~p~ 215 (276)
+.+|++++++.|.. +.+++..+++|-.+|-|||.. |+
T Consensus 285 ~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~-~r 330 (491)
T KOG2495|consen 285 RDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNG-PR 330 (491)
T ss_pred hccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCC-Cc
Confidence 99999999987641 123444678999999999986 44
No 212
>PRK06834 hypothetical protein; Provisional
Probab=97.35 E-value=0.00025 Score=66.04 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=60.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc-------ceeee--------ecC-------------------
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV-------GGLLQ--------YGI------------------- 159 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~-------gg~~~--------~~~------------------- 159 (276)
|.|+|+||+ |+.+|..|++.|.+|+|+|+.+.. +++.. .++
T Consensus 6 VlIVGaGp~-----Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 6 VVIAGGGPT-----GLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred EEEECCCHH-----HHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 445999999 999999999999999999987632 11110 000
Q ss_pred ----CC----CC----Cc-HHHHHHHHHHHHhcCcEEEeeeeecc---c-----cc-hhhhhcccCEEEEcCCCC
Q psy12810 160 ----PT----MK----LS-KEVVQRRVKLLAAEGIEFKTNINVGK---D-----IA-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 160 ----~~----~~----~~-~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----~~-~~~~~~~~D~vVlAtG~~ 212 (276)
.. ++ .. ..+...+.+.+++.|++++++++++. + +. .+..++.+|.||.|.|.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 00 00 01 12233445666778999999987741 0 11 112367899999999987
No 213
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.33 E-value=0.00097 Score=60.53 Aligned_cols=35 Identities=17% Similarity=-0.037 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGI 78 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~ 78 (276)
+|||++||+. |++.|++|+|+||+...+..|.-++
T Consensus 9 GPAG~~aA~~-la~~G~~V~llE~~~~~~~~cg~~i 43 (398)
T TIGR02028 9 GPAGASAAET-LASAGIQTFLLERKPDNAKPCGGAI 43 (398)
T ss_pred cHHHHHHHHH-HHhCCCcEEEEecCCCCCCCccccc
Confidence 6999999999 8999999999999876666665444
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.33 E-value=0.00062 Score=46.91 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=47.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 108 (276)
.+.|++.|.. ++++|.+|||+++++.+.- ..+.+...+..+.+++.||++++++.+
T Consensus 8 G~ig~E~A~~-l~~~g~~vtli~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 8 GFIGIELAEA-LAELGKEVTLIERSDRLLP---------GFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp SHHHHHHHHH-HHHTTSEEEEEESSSSSST---------TSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CHHHHHHHHH-HHHhCcEEEEEeccchhhh---------hcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4679999999 8999999999999886541 246777888889999999999999765
No 215
>PRK10015 oxidoreductase; Provisional
Probab=97.30 E-value=0.00023 Score=65.31 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=30.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
+.+.|||+||+ |+.+|..|++.|.+|+|+|+.+.+
T Consensus 6 ~DViIVGgGpA-----G~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 6 FDAIVVGAGVA-----GSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cCEEEECcCHH-----HHHHHHHHHhCCCeEEEEecCCCC
Confidence 34555999999 999999999999999999988754
No 216
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00024 Score=64.83 Aligned_cols=62 Identities=23% Similarity=0.118 Sum_probs=43.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeec-CCCCCCC-------HHHHHHHHHHHHhCCCeEEec
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYG-IPTMKLS-------KEVVQRRVKLLAAEGIEFKTN 105 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~-~~~~~~~-------~~~~~~~~~~l~~~gv~~~~~ 105 (276)
+-|||+||+. |+++||+|||+|+++++||.+.-. .+..+.- -.........|++.++++++.
T Consensus 9 G~AgL~~a~~-La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 9 GLAGLAAAYE-LADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQ 78 (485)
T ss_pred cHHHHHHHHH-HHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheee
Confidence 4689999999 899999999999999999988432 1222111 122344456777777776554
No 217
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.28 E-value=0.00012 Score=64.59 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=61.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccc----e-ee-------------------------------ee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVG----G-LL-------------------------------QY 157 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~g----g-~~-------------------------------~~ 157 (276)
|.|||+||+ |+.+|..|++.|++|+|||+.+... | .+ ..
T Consensus 4 V~IvGaG~a-----Gl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 78 (356)
T PF01494_consen 4 VAIVGAGPA-----GLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYD 78 (356)
T ss_dssp EEEE--SHH-----HHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeec
Confidence 445999999 9999999999999999999987431 0 00 00
Q ss_pred c----------------CC---CC----CCc-HHHHHHHHHHHHhcCcEEEeeeeecc---c-----------cchhhhh
Q psy12810 158 G----------------IP---TM----KLS-KEVVQRRVKLLAAEGIEFKTNINVGK---D-----------IAAKELY 199 (276)
Q Consensus 158 ~----------------~~---~~----~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----------~~~~~~~ 199 (276)
. +. .. ... .++...+.+.+++.|+++++++++.. + .+++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 79 GISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEET 158 (356)
T ss_dssp ETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEE
T ss_pred ccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeE
Confidence 0 00 00 011 34555666777888999999988751 1 0122236
Q ss_pred cccCEEEEcCCCC
Q psy12810 200 EEFDALLLCTGAT 212 (276)
Q Consensus 200 ~~~D~vVlAtG~~ 212 (276)
+.+|.||-|-|.+
T Consensus 159 i~adlvVgADG~~ 171 (356)
T PF01494_consen 159 IEADLVVGADGAH 171 (356)
T ss_dssp EEESEEEE-SGTT
T ss_pred EEEeeeecccCcc
Confidence 8899999999987
No 218
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.26 E-value=0.0024 Score=60.71 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=25.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
++|||.||+. |++.|.+|+|+||....||
T Consensus 8 G~AGl~AA~~-aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 8 GLAGLRAAVE-AAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEeccCCCCC
Confidence 5899999999 8999999999999876654
No 219
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.00019 Score=58.52 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=39.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHH-HHHHhCCCeEEe
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRV-KLLAAEGIEFKT 104 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~-~~l~~~gv~~~~ 104 (276)
+|+||.||++ +|++|.+|+||||+..+||-...| .+-+++-.++... +.|.+.||.+..
T Consensus 39 GPsGLtAAyy-LAk~g~kV~i~E~~ls~GGG~w~G--Gmlf~~iVv~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 39 GPSGLTAAYY-LAKAGLKVAIFERKLSFGGGIWGG--GMLFNKIVVREEADEILDEFGIRYEE 98 (262)
T ss_pred CcchHHHHHH-HHhCCceEEEEEeecccCCccccc--ccccceeeecchHHHHHHHhCCccee
Confidence 6999999999 899999999999988887633222 1112222233332 345566776654
No 220
>PRK07121 hypothetical protein; Validated
Probab=97.25 E-value=0.0044 Score=57.91 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=28.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++.|.+|+|+||.+..||...
T Consensus 29 G~AGl~AA~~-aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 29 GAAGACAAIE-AAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeCCCCCCCccc
Confidence 6899999999 9999999999999988887553
No 221
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.25 E-value=0.0024 Score=60.34 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=27.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++.|.+|+|+||....||...
T Consensus 25 G~AGl~AAi~-aae~G~~VilleK~~~~~g~s~ 56 (541)
T PRK07804 25 GVAGLTAALA-ARRAGRRVLVVTKAALDDGSTR 56 (541)
T ss_pred cHHHHHHHHH-HHHcCCeEEEEEccCCCCCchh
Confidence 5899999999 8999999999999887766443
No 222
>PRK06184 hypothetical protein; Provisional
Probab=97.24 E-value=0.00029 Score=65.89 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=29.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
.|.|+|+||+ |+.+|..|++.|.+|+|+|+.+.+
T Consensus 5 dVlIVGaGpa-----Gl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 5 DVLIVGAGPT-----GLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred cEEEECCCHH-----HHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3445999999 999999999999999999987643
No 223
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.22 E-value=5.9e-05 Score=69.11 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=29.5
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCC----------------------------C-----
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPT----------------------------M----- 162 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~----------------------------~----- 162 (276)
|+|+||+ |+.+|..+++.|.+|.|+|+.+.+||....+.-. .
T Consensus 4 VvGgG~a-----G~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 4 VVGGGPA-----GVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EE--SHH-----HHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred EECccHH-----HHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 4999999 9999999999999999999999998754321100 0
Q ss_pred -------CCcHH-HHHHHHHHHHhcCcEEEeeeeecc-----------ccc--hhhhhcccCEEEEcCCC
Q psy12810 163 -------KLSKE-VVQRRVKLLAAEGIEFKTNINVGK-----------DIA--AKELYEEFDALLLCTGA 211 (276)
Q Consensus 163 -------~~~~~-~~~~~~~~l~~~gv~i~~~~~v~~-----------~~~--~~~~~~~~D~vVlAtG~ 211 (276)
..+.+ ....+.+.+.+.|+++++++.+.. ... ....++.++.+|-|||.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111 111234455677999999988751 011 12557889999999994
No 224
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.21 E-value=0.00065 Score=57.87 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=28.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+|||+.||+. |++.|++|+|+||+..+||.+
T Consensus 34 GpAGl~AA~~-la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 34 GPSGLTAAYY-LAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cHHHHHHHHH-HHhCCCeEEEEecCCCCCCcc
Confidence 6999999999 899999999999998888743
No 225
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.19 E-value=0.00035 Score=63.59 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=29.5
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 20 dV~IvGaG~a-----Gl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 20 DVAIVGGGIV-----GLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CEEEECcCHH-----HHHHHHHHhcCCCEEEEEecCCc
Confidence 3445999999 99999999999999999998764
No 226
>PLN02463 lycopene beta cyclase
Probab=97.18 E-value=0.00077 Score=62.02 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=60.6
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccc-----eeee-----ecC----------------------
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVG-----GLLQ-----YGI---------------------- 159 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~g-----g~~~-----~~~---------------------- 159 (276)
+.+.|+|+||+ |+.+|..|++.|.+|+|+|+.+... +.|. .++
T Consensus 29 ~DVvIVGaGpA-----GLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 29 VDLVVVGGGPA-----GLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ceEEEECCCHH-----HHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 34456999999 9999999999999999999876321 1110 000
Q ss_pred ---CCCCCc-HHHHHHHHHHHHhcCcEEEeeeeec-cc-------cc-hhhhhcccCEEEEcCCCC
Q psy12810 160 ---PTMKLS-KEVVQRRVKLLAAEGIEFKTNINVG-KD-------IA-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 160 ---~~~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~-~~-------~~-~~~~~~~~D~vVlAtG~~ 212 (276)
+....+ .++...+.+.+.+.|++++.. +|. .+ +. .+..++.+|.||.|+|..
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~-~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQA-KVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEee-EEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 001112 334455666677789998743 332 11 11 122368999999999987
No 227
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.17 E-value=0.00096 Score=61.75 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-------ccchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-------DIAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-------~~~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+.+.+.+.|++|+.++.|.. .+.....++.+|.||+|+|.+
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDGQVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCcEEECCEEEEccccc
Confidence 456667777888889999999987741 012223357899999999987
No 228
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.14 E-value=0.00023 Score=64.21 Aligned_cols=29 Identities=41% Similarity=0.496 Sum_probs=27.9
Q ss_pred chhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 45 ATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 45 aGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
|||+||+. |+++|++|+|||+++++||.+
T Consensus 2 aGL~aA~~-L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 2 AGLAAAYY-LAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHH-HHHTTTEEEEEESSSSSBTTS
T ss_pred hHHHHHHH-HHhCCCCEEEEEcCCCCCcce
Confidence 89999999 899999999999999999977
No 229
>KOG1399|consensus
Probab=97.14 E-value=0.00028 Score=64.53 Aligned_cols=34 Identities=41% Similarity=0.551 Sum_probs=31.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeec
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYG 77 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~ 77 (276)
+||||++|+. +.+.||+|++|||.+.+||+|.|-
T Consensus 15 G~sGL~~ar~-l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 15 GPAGLAAARE-LLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred chHHHHHHHH-HHHCCCCceEEEecCCccceEeec
Confidence 7999999999 899999999999999999999653
No 230
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.13 E-value=0.0033 Score=59.79 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=26.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||.+..||..
T Consensus 14 G~AGl~AAl~-Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 14 GLAGLMSAHE-IASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEEccCCCCCcc
Confidence 5899999999 899999999999987666543
No 231
>PRK08244 hypothetical protein; Provisional
Probab=97.13 E-value=0.00036 Score=65.13 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=28.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|+|+||+ |+.+|..|++.|.+|+|||+.+.
T Consensus 5 VlIVGaGpa-----Gl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 5 VIIIGGGPV-----GLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred EEEECCCHH-----HHHHHHHHHHCCCcEEEEecCCC
Confidence 445999999 99999999999999999998764
No 232
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.00098 Score=60.50 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCC---cEEEEEcCCCccceeeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVG---HSVTVFERNDRVGGLLQY 157 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G---~~Vtvie~~~~~gg~~~~ 157 (276)
|.|||+|++ |+.+|..|.+.- ..|+|||+.+.+|.-..|
T Consensus 4 VAIIGgG~s-----Gi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 4 VAIIGGGFS-----GIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred EEEECCchH-----HHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 345999999 999999887531 229999999988764443
No 233
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.11 E-value=0.0071 Score=56.45 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=26.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++.|. |+|+||.+..||...
T Consensus 11 G~AGl~AA~~-aa~~G~-V~lleK~~~~~g~s~ 41 (488)
T TIGR00551 11 GAAGLSAALA-LADQGR-VIVLSKAPVTEGNSF 41 (488)
T ss_pred cHHHHHHHHH-HHhCCC-EEEEEccCCCCCcch
Confidence 5899999999 899998 999999876676543
No 234
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.11 E-value=0.004 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.077 Sum_probs=25.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+.|||.||+. |++.|.+|+|+||+..+|
T Consensus 44 G~AGl~AAi~-Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 44 GLAGASAAAT-LGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cHHHHHHHHH-HHHcCCcEEEEecCCCCC
Confidence 6899999999 899999999999976665
No 235
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.0036 Score=57.46 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=25.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |+ .|.+|+|+||.+..||..
T Consensus 13 G~AGl~AA~~-a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 13 GVAGLYSALN-LR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred hHHHHHHHHH-hc-cCCCEEEEecCCCCCCch
Confidence 5899999999 75 699999999988777643
No 236
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.09 E-value=0.00039 Score=64.78 Aligned_cols=32 Identities=38% Similarity=0.388 Sum_probs=29.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+++||+||.. ||++|++|+|+||++.+||.++
T Consensus 12 G~~GL~aAa~-LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 12 GLNGLAAAAL-LARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred ChhHHHHHHH-HHhCCCEEEEEEecCCCCcceE
Confidence 6899999999 8999999999999999999774
No 237
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.06 E-value=0.0056 Score=54.91 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=47.8
Q ss_pred hhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccc------cc--hhhhhcccCE
Q psy12810 133 LIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD------IA--AKELYEEFDA 204 (276)
Q Consensus 133 ~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~------~~--~~~~~~~~D~ 204 (276)
.++.+.|.... .|++.++ + |......++++.+...+++.||++++++.|..- +. .....+.+|.
T Consensus 61 ~fF~~~Gi~~~-~e~~grv---f----P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~ 132 (376)
T TIGR03862 61 DWARGLGIETF-VGSSGRV---F----PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADA 132 (376)
T ss_pred HHHHHCCCceE-ECCCCEE---C----CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCE
Confidence 45666666532 3443332 2 222456788999999999999999999988521 01 1112478999
Q ss_pred EEEcCCCC
Q psy12810 205 LLLCTGAT 212 (276)
Q Consensus 205 vVlAtG~~ 212 (276)
||+|||..
T Consensus 133 vIlAtGG~ 140 (376)
T TIGR03862 133 VVLALGGA 140 (376)
T ss_pred EEEcCCCc
Confidence 99999986
No 238
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.06 E-value=0.0033 Score=57.09 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=23.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+++|+. ++++|++|+|+|+.+.
T Consensus 11 G~aGl~~A~~-L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 11 GMVGSALALA-LQGSGLEVLLLDGGPL 36 (405)
T ss_pred cHHHHHHHHH-HhcCCCEEEEEcCCCc
Confidence 6999999999 8999999999999763
No 239
>PRK11445 putative oxidoreductase; Provisional
Probab=97.04 E-value=0.00064 Score=60.58 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=27.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|+|+||+ |+.+|..|++. ++|+++|+.+.
T Consensus 4 V~IvGaGpa-----Gl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 4 VAIIGLGPA-----GSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred EEEECCCHH-----HHHHHHHHhcc-CCEEEEECCCc
Confidence 345999999 99999999999 99999998763
No 240
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.01 E-value=0.00031 Score=57.41 Aligned_cols=34 Identities=29% Similarity=0.193 Sum_probs=27.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeec
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYG 77 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~ 77 (276)
+|+||.||+. +++.|++|.+|||+..+||-+..|
T Consensus 26 GpaGl~aA~~-La~~g~kV~v~E~~~~~GGg~~~G 59 (230)
T PF01946_consen 26 GPAGLTAAYY-LAKAGLKVAVIERKLSPGGGMWGG 59 (230)
T ss_dssp SHHHHHHHHH-HHHHTS-EEEEESSSS-BTTTTS-
T ss_pred ChhHHHHHHH-HHHCCCeEEEEecCCCCCcccccc
Confidence 7999999999 899999999999998898765455
No 241
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.01 E-value=0.0068 Score=58.03 Aligned_cols=28 Identities=18% Similarity=-0.046 Sum_probs=25.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
++|||.||+. |++.|.+|+|+||.+.+|
T Consensus 7 G~AGl~AAl~-Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 7 GLAGGMAAAK-LAELGYHVKLFSYVDAPR 34 (603)
T ss_pred cHHHHHHHHH-HHHcCCCEEEEEecCCCC
Confidence 5799999999 999999999999987454
No 242
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.01 E-value=0.0011 Score=59.84 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=28.2
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
+.|+|+||+ |+.+|..|++.|.+|+|+|+.+
T Consensus 9 V~IvGaG~a-----Gl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 9 AVIVGGGVV-----GAACALALADAGLSVALVEGRE 39 (392)
T ss_pred EEEECcCHH-----HHHHHHHHhcCCCEEEEEeCCC
Confidence 345999999 9999999999999999999875
No 243
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.98 E-value=0.0011 Score=63.20 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=26.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....||..
T Consensus 16 G~AGl~AAi~-Aa~~G~~V~lleK~~~~~g~t 46 (588)
T PRK08958 16 GGAGMRAALQ-ISQSGQSCALLSKVFPTRSHT 46 (588)
T ss_pred cHHHHHHHHH-HHHcCCcEEEEEccCCCCCcc
Confidence 5899999999 899999999999987666544
No 244
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.98 E-value=0.0013 Score=55.87 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=27.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCce
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGL 73 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~ 73 (276)
+||||.||+. ++++|++|+|+||+..+||-
T Consensus 30 GpAGL~aA~~-la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 30 GPSGLTAAYY-LAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCcc
Confidence 6999999999 89999999999999888753
No 245
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.0086 Score=57.10 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=27.0
Q ss_pred ccchhchHHHHHhhCC---CeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVG---HSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G---~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.| .+|+|+||....||..
T Consensus 14 G~AGl~AA~~-Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 14 GLAGLRAAVA-AAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred cHHHHHHHHH-HHHhCCCCCcEEEEEcccCCCCCc
Confidence 6899999999 89998 8999999988666644
No 246
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.95 E-value=0.0072 Score=56.70 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=26.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++ |.+|+|+||.+..||...
T Consensus 12 G~AGl~AAl~-a~~-g~~V~lveK~~~~~g~s~ 42 (510)
T PRK08071 12 GIAALTVAKE-LCH-EYNVIIITKKTKRNSNSH 42 (510)
T ss_pred cHHHHHHHHH-hhc-CCCEEEEeccCCCCCCch
Confidence 5899999999 776 999999999887777553
No 247
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.93 E-value=0.001 Score=65.41 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=61.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCcc---c-eee--e--------ec-------------------
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRV---G-GLL--Q--------YG------------------- 158 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~---g-g~~--~--------~~------------------- 158 (276)
|.|||+||+ |+.+|..|++. |++|+|+|+.+.. | |.. + .+
T Consensus 3 V~IIGaGpA-----GLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 77 (765)
T PRK08255 3 IVCIGGGPA-----GLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDV 77 (765)
T ss_pred EEEECCCHH-----HHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEE
Confidence 345999999 99999999998 8999999998752 2 110 0 00
Q ss_pred -----------CCCCCC-cHHHHHHHHHHHHhcCcEEEeeeeeccccchhhhhcccCEEEEcCCCC
Q psy12810 159 -----------IPTMKL-SKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 159 -----------~~~~~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~~~~~D~vVlAtG~~ 212 (276)
.+.... ..++.+.+.+.+.+.|+++++++.+... .+....+|.||.|.|.+
T Consensus 78 ~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i---~~~~~~~D~VVgADG~~ 140 (765)
T PRK08255 78 HFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDD---QALAADADLVIASDGLN 140 (765)
T ss_pred EECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCch---hhhhcCCCEEEEcCCCC
Confidence 000001 2345566667777889999999877521 12235799999999965
No 248
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.93 E-value=0.0017 Score=58.66 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|+|+++|.. +++.|++|+||||.+.++
T Consensus 13 GiaGl~~A~~-L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 13 GIGGLAAALA-LARQGIKVKLLEQAAEIG 40 (396)
T ss_pred cHHHHHHHHH-HHhCCCcEEEEeeCcccc
Confidence 6999999999 899999999999987654
No 249
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.92 E-value=0.0024 Score=60.99 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=26.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....+|..
T Consensus 21 G~AGl~AAi~-Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 21 GGSGMRASLQ-LARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEeccCCCCCCc
Confidence 6899999999 899999999999986555543
No 250
>PLN02697 lycopene epsilon cyclase
Probab=96.91 E-value=0.0014 Score=61.57 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=60.5
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc---ceeeee-----cC------------------------
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV---GGLLQY-----GI------------------------ 159 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~---gg~~~~-----~~------------------------ 159 (276)
+.+.|||+||+ |+.+|..|++.|.+|+++|+.... .|.|.. ++
T Consensus 109 ~DVvIVGaGPA-----GLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~ 183 (529)
T PLN02697 109 LDLVVIGCGPA-----GLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG 183 (529)
T ss_pred ccEEEECcCHH-----HHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence 44556999999 999999999999999999975332 123310 00
Q ss_pred -CCCCCc-HHHHHHHHHHHHhcCcEEEeeeeec-cc---------cchhhhhcccCEEEEcCCCC
Q psy12810 160 -PTMKLS-KEVVQRRVKLLAAEGIEFKTNINVG-KD---------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 160 -~~~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~-~~---------~~~~~~~~~~D~vVlAtG~~ 212 (276)
++...+ ..+.+.+.+.+.+.|+++ .++.|. .. ...+..++.+|.||.|+|.+
T Consensus 184 ~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~ 247 (529)
T PLN02697 184 RAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAA 247 (529)
T ss_pred CcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcC
Confidence 000012 234455666667789988 444443 11 11123468899999999987
No 251
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.0017 Score=54.82 Aligned_cols=57 Identities=33% Similarity=0.425 Sum_probs=45.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee----------ecCCCCCCCHHHHHHHHHHHHhCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ----------YGIPTMKLSKEVVQRRVKLLAAEGI 100 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~----------~~~~~~~~~~~~~~~~~~~l~~~gv 100 (276)
++||++||.. +++.|.+||||||+.-+||.+. +|.-.|+...+.....++.+.+.|+
T Consensus 10 GiAGl~aA~~-L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 10 GIAGLAAAYA-LREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL 76 (331)
T ss_pred chHHHHHHHH-HHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence 6899999999 8999999999999988998762 2345566666666777777777776
No 252
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.88 E-value=0.00069 Score=63.36 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.+||+||.. |++.|++|+|+||++++||.+.
T Consensus 7 G~~GL~aA~~-La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 7 GFGGLALAIR-LAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEECCCCCcCceE
Confidence 5789999999 8999999999999999999874
No 253
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.88 E-value=0.00095 Score=63.15 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=28.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~ 148 (276)
..|.|||+||+ |+++|..+++.|.+|.++|+.
T Consensus 5 yDVIVVGGGpA-----G~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHA-----GCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ceEEEECchHH-----HHHHHHHHHHcCCcEEEEecc
Confidence 34445999999 999999999999999999987
No 254
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.88 E-value=0.0007 Score=62.18 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=29.3
Q ss_pred ccchhchHHHHHhhCC--CeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVG--HSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G--~~V~l~Ek~~~lGG~~~ 75 (276)
++|||+||+. |++.| |+|+|+|+++++||.+.
T Consensus 9 GiaGL~aA~~-L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 9 GITGLSAAYR-LHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CHHHHHHHHH-HHHhCCCCCEEEEEcCCCCcceEE
Confidence 6899999999 89987 99999999999999774
No 255
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.88 E-value=0.0019 Score=62.03 Aligned_cols=31 Identities=10% Similarity=-0.092 Sum_probs=27.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....||..
T Consensus 38 G~AGl~AAi~-Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 38 GGAGLRAALG-LVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cHHHHHHHHH-HHHcCCcEEEEeccCCCCCCc
Confidence 6899999999 899999999999987667644
No 256
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.87 E-value=0.00072 Score=56.94 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=47.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee----------ecCCCCCCcHHHHHHHHHHHHhcCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ----------YGIPTMKLSKEVVQRRVKLLAAEGI 181 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~----------~~~~~~~~~~~~~~~~~~~l~~~gv 181 (276)
|.|||+|++ |+.+|..|+..|.+|||||++..+||-+. +|..+++...+...+..+.+.+.|+
T Consensus 4 iaIVGaGiA-----Gl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 4 IAIVGAGIA-----GLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL 76 (331)
T ss_pred EEEEccchH-----HHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence 345999999 99999999999999999999998887442 2334444445556666666666665
No 257
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.86 E-value=0.0022 Score=61.69 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=27.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....||..
T Consensus 59 G~AGl~AAl~-Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 59 GGAGLRAAIG-LSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred cHHHHHHHHH-HHhcCCcEEEEEcCCCCCCch
Confidence 5899999999 899999999999987666643
No 258
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.85 E-value=0.0046 Score=56.18 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCcEEEeeeeeccc----------cchhhhhcccCEEEEcCCCC
Q psy12810 166 KEVVQRRVKLLAAEGIEFKTNINVGKD----------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 166 ~~~~~~~~~~l~~~gv~i~~~~~v~~~----------~~~~~~~~~~D~vVlAtG~~ 212 (276)
..+...+.+.+.+.|++++.++.|..- +..+...+.+|.||+|+|.+
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence 345555667778899999998776421 11112357899999999976
No 259
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.84 E-value=0.0027 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=23.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
++|||.||+. |++.|.+|+|+||...
T Consensus 10 G~AGl~AAi~-aae~G~~V~liek~~~ 35 (466)
T PRK08401 10 GLAGLTAAIS-LAKKGFDVTIIGPGIK 35 (466)
T ss_pred cHHHHHHHHH-HHHCCCeEEEEeCCCC
Confidence 5899999999 8999999999999763
No 260
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.84 E-value=0.0021 Score=60.79 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=25.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC-CCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR-VGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~-lGG~~~ 75 (276)
+.|||.||+. | +.|.+|+|+||... .||...
T Consensus 16 G~AGl~AAi~-A-~~G~~VilleK~~~~~gG~s~ 47 (543)
T PRK06263 16 GGAGARAAIE-A-ERGKNVVIVSKGLFGKSGCTV 47 (543)
T ss_pred cHHHHHHHHH-H-hcCCCEEEEEccCCCCCcccc
Confidence 5899999999 8 89999999999764 466443
No 261
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.83 E-value=0.0028 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++.|.+|+|+||.+..||...
T Consensus 418 G~AGl~AAi~-Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 418 GLAGCSAAIE-AASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEEccCCCCCchh
Confidence 5899999999 9999999999999999998654
No 262
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.81 E-value=0.0036 Score=60.23 Aligned_cols=29 Identities=21% Similarity=-0.031 Sum_probs=25.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+.|||.||+. |++.|.+|+|+||....||
T Consensus 17 G~AGl~AAl~-Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 17 GGAGLRAAIE-ARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred CHHHHHHHHH-HHHCCCCEEEEeccCCCCC
Confidence 6899999999 8999999999999876554
No 263
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0034 Score=60.08 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=26.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....||..
T Consensus 21 G~AGl~AAl~-Aa~~G~~V~lveK~~~~~g~s 51 (598)
T PRK09078 21 GGAGLRATLG-MAEAGLKTACITKVFPTRSHT 51 (598)
T ss_pred cHHHHHHHHH-HHHcCCcEEEEEccCCCCcch
Confidence 6899999999 899999999999987666543
No 264
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.78 E-value=0.0097 Score=56.34 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc---c------c------chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK---D------I------AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~---~------~------~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+...+.++|+++++++.|+. + + +++..++.+|.||+|+|.+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 345556666777889999999987751 0 0 1122467899999999987
No 265
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.78 E-value=0.0023 Score=61.00 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc---c-----------c-chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK---D-----------I-AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-----------~-~~~~~~~~~D~vVlAtG~~ 212 (276)
...+...+.+.+.+.||++++++.++. + . +++...+.++.||+|||..
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 356777777778888999999987641 0 0 1111247899999999986
No 266
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.74 E-value=0.0016 Score=61.53 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=30.0
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
..|.|+|+||+ |+.+|..|++.|.+|+|+|+.+.
T Consensus 11 ~dV~IVGaGp~-----Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 11 TDVVIVGAGPV-----GLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCEEEECCCHH-----HHHHHHHHHHCCCcEEEEecCCC
Confidence 34445999999 99999999999999999998874
No 267
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.74 E-value=0.012 Score=55.73 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=25.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |+ .|.+|+|+||.+..||..
T Consensus 18 G~AGl~AAi~-A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 18 GAAGLYAALC-LP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cHHHHHHHHH-hh-cCCCEEEEEccCCCCCch
Confidence 5899999999 76 499999999988777754
No 268
>PRK07233 hypothetical protein; Provisional
Probab=96.72 E-value=0.001 Score=60.71 Aligned_cols=31 Identities=42% Similarity=0.522 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+++||+||+. |+++|++|+|+|+++++||.+
T Consensus 8 GiaGL~aA~~-L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 8 GIAGLAAAYR-LAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEEeCCCCCCce
Confidence 5899999999 899999999999999999976
No 269
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.71 E-value=0.00062 Score=63.45 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=34.6
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.++|||+|.. |+.+|..|++.|++|+|+|+.+.+||..+
T Consensus 5 dvvVIGaG~~-----GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 5 DVVVIGAGLN-----GLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred cEEEECCChh-----HHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 3445999999 99999999999999999999999998543
No 270
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.70 E-value=0.0052 Score=58.90 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=24.6
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lG 71 (276)
+.|||.||+. |++. |.+|+|+||.+..+
T Consensus 20 G~AGl~AAi~-Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 20 GMAGCGAAFE-AKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred CHHHHHHHHH-HHHhCCCCeEEEEECCCcCC
Confidence 6899999999 8888 99999999987543
No 271
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.70 E-value=0.0018 Score=58.55 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=27.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~ 150 (276)
+.|+|+||+ |+.+|..|++.| .+|+|+|+.+.
T Consensus 4 v~IvGaG~a-----Gl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 4 VVIAGGGYV-----GLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred EEEECccHH-----HHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 345999999 999999999985 99999998753
No 272
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.67 E-value=0.018 Score=55.80 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=25.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+.|||.||+. |++.|.+|+|+||.+..+|
T Consensus 14 G~AGl~AAi~-Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 14 GLAGLRVAIA-AAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred cHHHHHHHHH-HHHcCCCEEEEeCCCCCCc
Confidence 5799999999 8999999999999876554
No 273
>PLN02815 L-aspartate oxidase
Probab=96.67 E-value=0.004 Score=59.40 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++.| +|+|+||.+..||...
T Consensus 38 G~AGl~AAl~-Aae~G-~VvlleK~~~~gg~s~ 68 (594)
T PLN02815 38 GIAGLRYALE-VAEYG-TVAIITKDEPHESNTN 68 (594)
T ss_pred cHHHHHHHHH-HhhCC-CEEEEECCCCCCCcHH
Confidence 5899999999 89999 9999999887777443
No 274
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.66 E-value=0.0012 Score=61.02 Aligned_cols=31 Identities=32% Similarity=0.294 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+++||+||+. ++++|++|+|+|+++++||.+
T Consensus 8 G~aGl~aA~~-L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 8 GLAGLSCAKY-LADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCCCc
Confidence 6899999999 899999999999999999976
No 275
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.65 E-value=0.0017 Score=61.52 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=29.9
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
.|.|+|+||+ |+.+|..|++.|++|+|||+.+.+
T Consensus 25 dVlIVGaGpa-----Gl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 25 PVVVVGAGPV-----GLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CEEEECCCHH-----HHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3445999999 999999999999999999988743
No 276
>PRK07588 hypothetical protein; Provisional
Probab=96.65 E-value=0.002 Score=58.13 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=28.8
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
.|||+||+ |+.+|..|++.|++|+|+|+.+..
T Consensus 4 ~IVGgG~a-----Gl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 4 AISGAGIA-----GPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred EEECccHH-----HHHHHHHHHHCCCceEEEeCCCCc
Confidence 35999999 999999999999999999987643
No 277
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.65 E-value=0.0068 Score=54.76 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccC-CCCCceeeecCCCCCCCHHHHHHHHHHHHhCCC-eEEeccccCccchhhhccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERN-DRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAKVTNHT 120 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~-~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~~~~~~~v~~~v~v~iiG~g 120 (276)
+|+|+++|.. +++.|++|+|+||. ..+-..- .++ .+...-.+.|+++|+ +-......... ..
T Consensus 11 G~aGl~lA~~-L~~~G~~V~l~E~~~~~~~~~~-r~~-------~l~~~~~~~L~~lG~~~~i~~~~~~~~-~~------ 74 (387)
T COG0654 11 GPAGLALALA-LARAGLDVTLLERAPRELLERG-RGI-------ALSPNALRALERLGLWDRLEALGVPPL-HV------ 74 (387)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEccCccccccCc-eee-------eecHhHHHHHHHcCChhhhhhccCCce-ee------
Confidence 6999999999 89999999999997 2111000 111 112223455667776 32222111000 00
Q ss_pred CCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcC-cEEEeeeeecc--------
Q psy12810 121 PQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEG-IEFKTNINVGK-------- 191 (276)
Q Consensus 121 p~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~-------- 191 (276)
......+...+.++....-++...+. ....++...+.+.+.+.+ ++++.++.++.
T Consensus 75 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v 138 (387)
T COG0654 75 ------------MVVDDGGRRLLIFDAAELGRGALGYV----VPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGV 138 (387)
T ss_pred ------------EEEecCCceeEEecccccCCCcceEE----eEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCce
Confidence 00001111223333222211111111 123456666777777665 99999888752
Q ss_pred --ccchhhhhcccCEEEEcCCCC
Q psy12810 192 --DIAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 192 --~~~~~~~~~~~D~vVlAtG~~ 212 (276)
....+..++.+|.||-|-|.+
T Consensus 139 ~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 139 TVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred EEEEcCCCcEEecCEEEECCCCc
Confidence 011122368899999999976
No 278
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.63 E-value=0.0011 Score=60.68 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
.|||++||+. ||+.|++|.|+||.+.+||+..
T Consensus 8 G~aG~~AAi~-AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 8 GPAGVAAAIA-AARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp SHHHHHHHHH-HHHTTS-EEEE-SSSSSTGGGG
T ss_pred cHHHHHHHHH-HHHCCCEEEEEECCccCCCcce
Confidence 6999999999 9999999999999999999774
No 279
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.61 E-value=0.002 Score=58.45 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=42.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee-c--CCCCCCCHHHHHHHHHHH-HhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY-G--IPTMKLSKEVVQRRVKLL-AAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~-~--~~~~~~~~~~~~~~~~~l-~~~gv~~~~~~~v 108 (276)
++||++||+. ||+.|++|.|+||++.+||.+.. . .|..+.+-=++.-....+ ...+|++.+..++
T Consensus 133 GvAGitAAl~-La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV 201 (622)
T COG1148 133 GVAGITAALE-LADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEV 201 (622)
T ss_pred cHHHHHHHHH-HHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeee
Confidence 6999999999 89999999999999999997632 1 344433322222222222 2346676666544
No 280
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.60 E-value=0.0034 Score=56.80 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 5 V~IvGaGpa-----Gl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 5 VAIIGAGPA-----GLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred EEEECCCHH-----HHHHHHHHHhcCCCEEEEEcCCc
Confidence 345999999 99999999999999999998864
No 281
>PRK07208 hypothetical protein; Provisional
Probab=96.60 E-value=0.0015 Score=60.67 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+++||+||+. |+++|++|+|+|+++++||.+.
T Consensus 13 GisGL~aA~~-L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 13 GPAGLTAAYE-LLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCceee
Confidence 6899999999 8999999999999999999873
No 282
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.59 E-value=0.0015 Score=60.31 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=29.5
Q ss_pred ccchhchHHHHHhhC----CCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLV----GHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~----G~~V~l~Ek~~~lGG~~~ 75 (276)
+++||+||+. |+++ |++|+|+|+++++||.+.
T Consensus 11 GiaGL~aA~~-L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 11 GISGLCAAYY-LEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CHHHHHHHHH-HHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 6899999999 7888 999999999999999874
No 283
>PRK06185 hypothetical protein; Provisional
Probab=96.57 E-value=0.0024 Score=57.98 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.6
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
.|.|+|+||+ |+.+|..|++.|.+|+|+|+.+
T Consensus 8 dV~IvGgG~~-----Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 8 DCCIVGGGPA-----GMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cEEEECCCHH-----HHHHHHHHHhCCCcEEEEecCC
Confidence 3445999999 9999999999999999999875
No 284
>KOG0029|consensus
Probab=96.57 E-value=0.0014 Score=61.03 Aligned_cols=31 Identities=39% Similarity=0.387 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||+||+. |.+.|++|+|+|.++++||-.
T Consensus 24 GiaGLsAArq-L~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 24 GLAGLSAARQ-LQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cHHHHHHHHH-HHHcCCceEEEeccCCcCcee
Confidence 7999999999 899999999999999999977
No 285
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.56 E-value=0.0015 Score=60.95 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=29.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+++||+||.. |+++|++|+|+||++.+||.+
T Consensus 10 G~~GL~aa~~-La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 10 GIAGLTAAAL-LAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecCCCCCCcc
Confidence 6899999999 899999999999999999977
No 286
>PLN02487 zeta-carotene desaturase
Probab=96.55 E-value=0.0015 Score=61.84 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+++||++|+. ++++||+|+|||+.+.+||.+.
T Consensus 84 G~~Gl~~a~~-L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 84 GLAGMSTAVE-LLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CHHHHHHHHH-HHhCCCeeEEEecCCCCCCcee
Confidence 5899999999 8999999999999999999763
No 287
>PRK07190 hypothetical protein; Provisional
Probab=96.53 E-value=0.002 Score=60.12 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=29.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|.|+|+||+ |+.+|..|++.|.+|+|+|+.+.
T Consensus 7 dVlIVGAGPa-----GL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 7 DVVIIGAGPV-----GLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred eEEEECCCHH-----HHHHHHHHHHcCCCEEEEeCCCc
Confidence 3445999999 99999999999999999998874
No 288
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.52 E-value=0.0036 Score=56.54 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=27.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~ 148 (276)
+.|+|+||+ |+.+|..|++.|.+|+|+|+.
T Consensus 3 VvIVGaGpA-----G~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 3 VAVIGGGPS-----GATAAETLARAGIETILLERA 32 (388)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCcEEEEECC
Confidence 345999999 999999999999999999987
No 289
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.49 E-value=0.02 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhc-CcEEEeeeeecc---c--------c--chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAE-GIEFKTNINVGK---D--------I--AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~-gv~i~~~~~v~~---~--------~--~~~~~~~~~D~vVlAtG~~ 212 (276)
...+...+.+.+.+. ||+++.++.++. + . .+....+.++.||+|||..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 345666676777664 899999876541 1 0 0111247899999999985
No 290
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.47 E-value=0.027 Score=53.77 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=26.5
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||.||+. |++. |.+|+|+||....||...
T Consensus 13 G~AGl~AAi~-Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 13 GGAGLRAAIA-AAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred cHHHHHHHHH-HHHhCCCCcEEEEEccCCCCCChh
Confidence 5899999999 8876 579999999877776543
No 291
>PLN02576 protoporphyrinogen oxidase
Probab=96.45 E-value=0.002 Score=60.15 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=29.6
Q ss_pred ccchhchHHHHHhhC-CCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLV-GHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~-G~~V~l~Ek~~~lGG~~~ 75 (276)
+++||+||+. |++. |++|+|+|+++++||.+.
T Consensus 21 GisGL~aA~~-L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 21 GVSGLAAAYA-LASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CHHHHHHHHH-HHHhcCCCEEEEecCCCCCCcee
Confidence 6899999999 7888 999999999999999874
No 292
>KOG0029|consensus
Probab=96.45 E-value=0.00086 Score=62.40 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=34.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|.|||||.+ |+++|.+|...|++|+|+|..+++||-..
T Consensus 17 ~VIVIGAGia-----GLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 17 KVIVIGAGLA-----GLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cEEEECCcHH-----HHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 3445999999 99999999999999999999999998553
No 293
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.44 E-value=0.0088 Score=57.15 Aligned_cols=31 Identities=19% Similarity=-0.011 Sum_probs=27.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++.|.+|+|+||....||..
T Consensus 12 G~AGl~AAi~-Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 12 GLAGLMATIK-AAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred hHHHHHHHHH-HHHcCCcEEEEEccCCCCCcc
Confidence 5899999999 899999999999987666544
No 294
>PRK06126 hypothetical protein; Provisional
Probab=96.42 E-value=0.011 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+||++|+. |+++|++|+||||.+.
T Consensus 16 GpaGL~~Al~-La~~G~~v~viEr~~~ 41 (545)
T PRK06126 16 GPVGLALALD-LGRRGVDSILVERKDG 41 (545)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEeCCCC
Confidence 6999999999 8999999999999753
No 295
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.39 E-value=0.00094 Score=62.47 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=34.1
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
+|||+|.+ |+++|..|++.|++|+|+|+++.+||...
T Consensus 2 vVIGaG~~-----GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 2 VVIGAGFG-----GLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred EEECcCHH-----HHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 35999999 99999999999999999999999998654
No 296
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.37 E-value=0.015 Score=53.70 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=23.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|||++||+. +|+.|++|+|+||+..
T Consensus 48 GPAG~~aA~~-LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 48 GPAGACAAET-LAKGGIETFLIERKLD 73 (450)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCC
Confidence 6999999999 8999999999999753
No 297
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.35 E-value=0.0016 Score=58.35 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=24.2
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEE-cCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVF-ERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvi-e~~~~~ 151 (276)
|||+|.+ |+++|..+++.|.+|.++ ...+.+
T Consensus 4 VVGgG~A-----G~eAA~aaAr~G~~V~Lit~~~d~i 35 (392)
T PF01134_consen 4 VVGGGHA-----GCEAALAAARMGAKVLLITHNTDTI 35 (392)
T ss_dssp EESSSHH-----HHHHHHHHHHTT--EEEEES-GGGT
T ss_pred EECCCHH-----HHHHHHHHHHCCCCEEEEeeccccc
Confidence 4999999 999999999999999999 444444
No 298
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.35 E-value=0.0025 Score=59.48 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=30.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+.+||+||.. |++.|++|+|+||++.+||.++.
T Consensus 9 G~~Gl~aA~~-La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 9 GIGGLVTATQ-LAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEECCCCCCCceeE
Confidence 6789999999 89999999999999999998853
No 299
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.32 E-value=0.0053 Score=59.50 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHHhcCcEEEeeeeecc-c-------cc-hhhhhcccCEEEEcCCCC
Q psy12810 164 LSKEVVQRRVKLLAAEGIEFKTNINVGK-D-------IA-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 164 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~~-~~~~~~~~D~vVlAtG~~ 212 (276)
.+..+...+.+.+.+ |++++.++.|.. . +. .+...+.+|.||+|+|.+
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~ 462 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHD 462 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCC
Confidence 345677777777878 999999887641 1 11 112235799999999987
No 300
>PLN02576 protoporphyrinogen oxidase
Probab=96.30 E-value=0.0011 Score=61.77 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=36.2
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhC-CcEEEEEcCCCccceeee
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIV-GHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~-G~~Vtvie~~~~~gg~~~ 156 (276)
.+..+.|||+|.+ |+++|.+|.+. |++|+|+|+.+++||...
T Consensus 11 ~~~~v~IIGaGis-----GL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVS-----GLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHH-----HHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 3444556999999 99999999999 999999999999998654
No 301
>PLN02268 probable polyamine oxidase
Probab=96.28 E-value=0.003 Score=57.88 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=29.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||+||+. |.++|++|+|+|+++++||.+.
T Consensus 9 GisGL~aA~~-L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 9 GIAGIAAARA-LHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEeCCCCCCceee
Confidence 5689999999 8999999999999999999774
No 302
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.24 E-value=0.0013 Score=60.49 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.6
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+.+|..|++.| ++|+|+|+.+++||..+
T Consensus 4 ~IVGaGia-----GL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 4 AIIGGGIT-----GLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred EEECCCHH-----HHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 35999999 999999999988 89999999999999664
No 303
>PRK08275 putative oxidoreductase; Provisional
Probab=96.19 E-value=0.016 Score=55.04 Aligned_cols=27 Identities=19% Similarity=0.008 Sum_probs=23.5
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~l 70 (276)
+.|||.||+. |++. |.+|+|+||.+..
T Consensus 18 G~AGl~AAi~-aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 18 GTAGPMAAIK-AKERNPALRVLLLEKANVK 46 (554)
T ss_pred CHHHHHHHHH-HHHhCCCCeEEEEeCCCCC
Confidence 6899999999 8876 7899999998753
No 304
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.17 E-value=0.0038 Score=56.13 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=30.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+++|+++|.. |++.|++|+|+|+++.+||.|..
T Consensus 10 G~aGlsaA~~-La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 10 GLSGIVLANI-LAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecCCCCCCceee
Confidence 6899999999 78999999999999999998743
No 305
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.17 E-value=0.0038 Score=57.07 Aligned_cols=32 Identities=47% Similarity=0.580 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCC--CeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVG--HSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G--~~V~l~Ek~~~lGG~~~ 75 (276)
+.+||+||+. |+++| .+|+|||+++++||.+.
T Consensus 9 GiaGLsaAy~-L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 9 GIAGLSAAYR-LQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred cHHHHHHHHH-HHHhCCCCcEEEEecCCCCCceEE
Confidence 5799999999 89999 99999999999999874
No 306
>PRK07208 hypothetical protein; Provisional
Probab=96.15 E-value=0.0015 Score=60.63 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=34.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
+.|||+|.+ |+++|..|++.|++|+|+|+.+++||.+.
T Consensus 7 vvIiGaGis-----GL~aA~~L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 7 VVIIGAGPA-----GLTAAYELLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred EEEECcCHH-----HHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 345999999 99999999999999999999999999654
No 307
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.14 E-value=0.015 Score=55.46 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=26.1
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++. |.+|+|+||....||..
T Consensus 12 G~AGl~AAl~-aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 12 GGAGLRAAIA-AAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred cHHHHHHHHH-HHHhCCCCcEEEEEccCCCCCCc
Confidence 5899999999 8876 68999999988777644
No 308
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.11 E-value=0.0056 Score=55.04 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=29.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCccce
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRVGG 153 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~gg 153 (276)
|+|+|++ |+++|..|++. |++|.++|+.+..++
T Consensus 4 IvGaG~A-----Gl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 4 IVGGGLA-----GGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred EECccHH-----HHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 4999999 99999999986 999999999887665
No 309
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.10 E-value=0.012 Score=56.10 Aligned_cols=28 Identities=11% Similarity=-0.078 Sum_probs=23.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+.|||.||+. |++. .+|+|+||....||
T Consensus 14 G~AGl~AAl~-aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 14 GGAGMRAAIE-AGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred cHHHHHHHHH-HHhC-CCEEEEeCCCCCCC
Confidence 6899999999 7876 89999999875555
No 310
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0033 Score=57.58 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|.|+|-+ |+++|..|++.|++|||+|.++++||...
T Consensus 4 ai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 4 AIAGAGLA-----GLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred EEEcccHH-----HHHHHHHHHhCCCceEEEeccCccCceee
Confidence 34899999 99999999999999999999999998654
No 311
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.05 E-value=0.0045 Score=57.57 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+.+|++||.. ++++|++|+|||+++.+||.+..
T Consensus 8 G~aGl~aA~~-L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 8 GLAGLSTAVE-LVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEEecCCCCceeee
Confidence 5789999999 89999999999999999997643
No 312
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.02 E-value=0.076 Score=50.22 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=25.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||.||+. |++. .+|+|+||....||..
T Consensus 17 G~AGl~AA~~-aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 17 GAAGLSLALR-LAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred hHHHHHHHHH-HHHC-CCEEEEeccCCCCCCh
Confidence 5899999999 7876 8999999988777744
No 313
>PRK07233 hypothetical protein; Provisional
Probab=96.01 E-value=0.0018 Score=59.04 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.8
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+++|..|++.|++|+|+|+.+++||...
T Consensus 3 vVIGaGia-----GL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 3 AIVGGGIA-----GLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 35999999 99999999999999999999999998653
No 314
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.01 E-value=0.0049 Score=48.28 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=25.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhC-----CcEEEEEcCCCc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIV-----GHSVTVFERNDR 150 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~-----G~~Vtvie~~~~ 150 (276)
|||+||+ |+.++..|.+. ..+|+|||+.+.
T Consensus 2 IIG~G~~-----G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 2 IIGGGPS-----GLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred EECcCHH-----HHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999 99999998776 467999999665
No 315
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.96 E-value=0.032 Score=52.97 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=26.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
++||++||.. +++.|.+|+|+|++...+|.|
T Consensus 9 G~AGl~aA~a-la~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 9 GHAGCEAALA-AARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred cHHHHHHHHH-HHHCCCCEEEEecccccccCC
Confidence 6899999999 899999999999975444443
No 316
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.94 E-value=0.0022 Score=58.61 Aligned_cols=37 Identities=32% Similarity=0.480 Sum_probs=34.5
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+++|.+|++.+ .+|+|+|+++++||.++
T Consensus 4 ~IiG~Gia-----GLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 4 AIIGGGIA-----GLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred EEECCcHH-----HHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 35999999 999999999999 99999999999999886
No 317
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.93 E-value=0.028 Score=50.60 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHhcCcEEEeeeeecc-c-------cc-hhhhhcccCEEEEcCCCC
Q psy12810 164 LSKEVVQRRVKLLAAEGIEFKTNINVGK-D-------IA-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 164 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~-~-------~~-~~~~~~~~D~vVlAtG~~ 212 (276)
.+..+...+.+.+.+ |++++.++.|.. + +. .+...+.+|.||+|+|.+
T Consensus 133 dp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred ChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcc
Confidence 345677777777888 999999987741 1 11 112237899999999987
No 318
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.91 E-value=0.0023 Score=56.81 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=31.2
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVG 152 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~g 152 (276)
+.|||+||+ |+.+|..+++.|++|+|||+.+.+|
T Consensus 6 viIIGgGpA-----GlMaA~~aa~~G~~V~lid~~~k~G 39 (408)
T COG2081 6 VIIIGGGPA-----GLMAAISAAKAGRRVLLIDKGPKLG 39 (408)
T ss_pred EEEECCCHH-----HHHHHHHHhhcCCEEEEEecCcccc
Confidence 445999999 9999999999999999999999875
No 319
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.87 E-value=0.0023 Score=59.69 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
|||+|.+ |+.+|..|++.|++|+|+|+++.+||..
T Consensus 6 IIGaG~~-----GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 6 VIGAGIA-----GLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred EECcCHH-----HHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4999999 9999999999999999999999998855
No 320
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.82 E-value=0.035 Score=48.73 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHHHhcCcEEEeeeeeccc---------cchhhhhcccCEEEEcCCCC
Q psy12810 164 LSKEVVQRRVKLLAAEGIEFKTNINVGKD---------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 164 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~~---------~~~~~~~~~~D~vVlAtG~~ 212 (276)
.+..+...+.+.+.+.|++++.++.|+.- +......+.+|.||+|+|.+
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAW 192 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChh
Confidence 45677788888889999999999877510 12222367899999999987
No 321
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.77 E-value=0.0028 Score=58.48 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=33.7
Q ss_pred hhccCCCCCCCCCCCCcchhhhhC----CcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIV----GHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~----G~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+.+|..|++. |++|+|+|+.+++||..+
T Consensus 6 ~VIGaGia-----GL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 6 VIIGGGIS-----GLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred EEECCCHH-----HHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 34999999 99999999998 999999999999998654
No 322
>PLN02268 probable polyamine oxidase
Probab=95.75 E-value=0.0029 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=33.1
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
|||+|-+ |+.+|..|.+.|++|+|+|+.+++||-..
T Consensus 5 VIGaGis-----GL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 5 VIGGGIA-----GIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred EECCCHH-----HHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4999999 99999999999999999999999998553
No 323
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.68 E-value=0.0078 Score=54.61 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=27.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+|||.+||+. |++.|.+|.|+||.+.+|-
T Consensus 12 GPAGs~aA~~-la~~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 12 GPAGSSAARR-LAKAGLDVLVLEKGSEPGA 40 (396)
T ss_pred chHHHHHHHH-HHHcCCeEEEEecCCCCCC
Confidence 7999999999 8999999999999888885
No 324
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.67 E-value=0.0079 Score=55.66 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred ccchhchHHHHHhhC------CCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLV------GHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~------G~~V~l~Ek~~~lGG~~~ 75 (276)
+.+||+||+. |++. |++|+|+|+++++||.+.
T Consensus 10 GisGL~aA~~-L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 10 GITGLSTMFY-LEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CHHHHHHHHH-HHhhhhccCCCccEEEEecCCCccceEE
Confidence 5789999999 7775 489999999999999874
No 325
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.62 E-value=0.0029 Score=58.37 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=33.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
.|||+|++ |+++|..|.+.|++|+|+|+.+++||..
T Consensus 3 ~IiGaG~a-----Gl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 3 AIAGAGLA-----GLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 35999999 9999999999999999999999999854
No 326
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.019 Score=52.94 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=53.0
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccch
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 195 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~ 195 (276)
++|+|+. |+.+|..|++.|++|+++|+.+.. ......+.+.+.|++++.+....
T Consensus 10 iiG~g~~-----G~~~A~~l~~~G~~V~~~d~~~~~----------------~~~~~~~~l~~~~~~~~~~~~~~----- 63 (450)
T PRK14106 10 VVGAGVS-----GLALAKFLKKLGAKVILTDEKEED----------------QLKEALEELGELGIELVLGEYPE----- 63 (450)
T ss_pred EECCCHH-----HHHHHHHHHHCCCEEEEEeCCchH----------------HHHHHHHHHHhcCCEEEeCCcch-----
Confidence 3899998 999999999999999999876521 11233344666788876654332
Q ss_pred hhhhcccCEEEEcCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
...-.+|.||+++|.. +..+.
T Consensus 64 -~~~~~~d~vv~~~g~~-~~~~~ 84 (450)
T PRK14106 64 -EFLEGVDLVVVSPGVP-LDSPP 84 (450)
T ss_pred -hHhhcCCEEEECCCCC-CCCHH
Confidence 1223589999999986 66553
No 327
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.54 E-value=0.0091 Score=56.17 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=28.4
Q ss_pred ccchhchHHHHHhhC----CCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLV----GHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~----G~~V~l~Ek~~~lGG~~~ 75 (276)
+.|||+||.. |++. |++|+|+|+.+.+||.+.
T Consensus 31 GiAGLAAA~~-L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 31 GLASLAAAVF-LIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CHHHHHHHHH-HHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 6899999999 7774 789999999999999874
No 328
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.53 E-value=0.0077 Score=52.65 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=27.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+-+||+||+. ++++ |+|||||.++++||-.+
T Consensus 17 GisGLSAA~~-Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 17 GISGLSAAWL-LSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred cchhhhhHHh-hhcc-cceEEEeccccccCccc
Confidence 5789999999 6766 99999999999999664
No 329
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.50 E-value=0.0026 Score=57.86 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=25.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVG 152 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~g 152 (276)
+.|||+||+ |+.+|..+++.|.+|+|+|+++.+|
T Consensus 3 viIIGgGaA-----Gl~aA~~aa~~g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 3 VIIIGGGAA-----GLMAAITAAEKGARVLVLERNKRVG 36 (409)
T ss_dssp EEEE--SHH-----HHHHHHHHHHTT--EEEE-SSSSS-
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCCEEEEeCCcccc
Confidence 345999999 9999999999999999999999773
No 330
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.49 E-value=0.025 Score=53.85 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc---c-------------cchhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK---D-------------IAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~---~-------------~~~~~~~~~~D~vVlAtG~~ 212 (276)
...+...+.+.+.+.||+++.++.++. + .+++...+.++.||+|||..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 456667777777788999999876541 1 01222356789999999975
No 331
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.48 E-value=0.0093 Score=54.13 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=28.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
|.|+|+||+ |+.+|..|++.|++|+|+|+.+
T Consensus 5 V~IVGaG~a-----Gl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 5 LLIVGAGMV-----GSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred EEEECccHH-----HHHHHHHHhcCCCEEEEEcCCC
Confidence 345999999 9999999999999999999876
No 332
>PRK10015 oxidoreductase; Provisional
Probab=95.38 E-value=0.011 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=25.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|||++||+. ||+.|++|+|+||.+.+|
T Consensus 14 GpAG~~aA~~-LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 14 GVAGSVAALV-MARAGLDVLVIERGDSAG 41 (429)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecCCCCC
Confidence 7999999999 899999999999987665
No 333
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.38 E-value=0.01 Score=58.22 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
++|||.||+. |+++|++|+|+|+++++||.+
T Consensus 247 G~aGl~aA~~-L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 247 GLAGLVAARQ-LLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEeccccCCCcc
Confidence 6899999999 899999999999999999976
No 334
>KOG2820|consensus
Probab=95.27 E-value=0.032 Score=48.70 Aligned_cols=31 Identities=6% Similarity=0.018 Sum_probs=27.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
+.++|+|-. |+++|..|++.|.++.++|+-+
T Consensus 10 viiVGAGVf-----G~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 10 VIIVGAGVF-----GLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred EEEEccccc-----chHHHHHHHhcCCeEEEEeccC
Confidence 345899999 9999999999999999999866
No 335
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.027 Score=48.75 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=26.8
Q ss_pred cchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 44 TATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 44 paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
-+|...|.. |++.|++|.|+||++.+||-|
T Consensus 11 lsG~V~A~~-a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 11 LSGAVIAEV-AAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred hhHHHHHHH-HHHcCCEEEEEeccccCCCcc
Confidence 457777887 899999999999999999988
No 336
>PLN02612 phytoene desaturase
Probab=95.23 E-value=0.013 Score=55.76 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=28.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+++||+||+. ++++|++|+|+|+++++||.+
T Consensus 102 G~~Gl~~a~~-l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 102 GLAGLSTAKY-LADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CHHHHHHHHH-HHhcCCeEEEEecCCCCCCcc
Confidence 4789999999 899999999999999999976
No 337
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.23 E-value=0.013 Score=53.67 Aligned_cols=29 Identities=24% Similarity=0.168 Sum_probs=26.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+|||++||+. |++.|++|+|+||.+.+|.
T Consensus 14 GpAG~~aA~~-La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 14 GLAGSVAALV-LAREGAQVLVIERGNSAGA 42 (428)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEEcCCCCCC
Confidence 7999999999 8999999999999887765
No 338
>PLN02568 polyamine oxidase
Probab=95.22 E-value=0.015 Score=54.90 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=29.0
Q ss_pred ccchhchHHHHHhhCC-----CeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVG-----HSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G-----~~V~l~Ek~~~lGG~~~ 75 (276)
++|||+||+. |++.| ++|+|+|+++++||.+.
T Consensus 14 G~aGl~aa~~-L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 14 GMAGLTAANK-LYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CHHHHHHHHH-HHhcccccCCceEEEEeCCCCcCCeEE
Confidence 6899999999 78777 99999999999999873
No 339
>PLN02487 zeta-carotene desaturase
Probab=95.19 E-value=0.0063 Score=57.68 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.+.|||+|++ |+.+|..|++.|++|+|+|+.+.+||.+.
T Consensus 77 ~v~iiG~G~~-----Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 77 KVAIIGAGLA-----GMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred eEEEECCCHH-----HHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 4455999999 99999999999999999999999988654
No 340
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.19 E-value=0.0058 Score=57.09 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=33.7
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+.+|..|++.|++|+|+|+++.+||...
T Consensus 4 vViGaG~~-----Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 4 IVIGSGIG-----GLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred EEECCcHH-----HHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 35999999 99999999999999999999999988554
No 341
>PRK07045 putative monooxygenase; Reviewed
Probab=95.18 E-value=0.0051 Score=55.48 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=30.1
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
.|.|||+||+ |+.+|..|++.|++|+|+|+.+..
T Consensus 7 ~V~IiGgGpa-----Gl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 7 DVLINGSGIA-----GVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred EEEEECCcHH-----HHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4455999999 999999999999999999988754
No 342
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.18 E-value=0.024 Score=50.98 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=28.1
Q ss_pred hccCCCCCCCCCCCCcchhh--hhCCcEEEEEcCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIV--NIVGHSVTVFERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l--~~~G~~Vtvie~~~~~ 151 (276)
|+|+||+ |+.+|..| ++.|.+|+|+|+.+..
T Consensus 4 IvGaGpA-----GlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 4 IVGAGPA-----GLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred EECCcHH-----HHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 4999999 99999999 8899999999987755
No 343
>PRK06753 hypothetical protein; Provisional
Probab=95.15 E-value=0.0049 Score=55.19 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
|.|+|+||+ |+.+|..|++.|++|+|+|+.+.+
T Consensus 3 V~IvGgG~a-----Gl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 3 IAIIGAGIG-----GLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCcEEEEecCCcc
Confidence 345999999 999999999999999999988753
No 344
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.13 E-value=0.015 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=24.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+.+|+. ++++|++|+||||++..
T Consensus 10 G~aGl~~A~~-L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 10 GPAGLAAALA-LARAGIDVTIIERRPDP 36 (356)
T ss_dssp SHHHHHHHHH-HHHTTCEEEEEESSSSC
T ss_pred CHHHHHHHHH-HHhcccccccchhcccc
Confidence 6999999999 89999999999997654
No 345
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.12 E-value=0.007 Score=54.42 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=33.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|+|+|++ |+.+|..|++.|.+|+|+|+.+.+||...
T Consensus 5 vIIGaG~a-----GlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 5 IIVGAGLS-----GIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred EEECCCHH-----HHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 35999999 99999999999999999999999988543
No 346
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=94.98 E-value=0.018 Score=51.88 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=27.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+|||+++|+. +++.|++|+|+|+++.+||..
T Consensus 8 G~AGl~~A~~-la~~g~~v~liE~~~~~~~~~ 38 (388)
T TIGR01790 8 GPAGLAIALE-LARPGLRVQLIEPHPPIPGNH 38 (388)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEccCCCCCCCc
Confidence 6999999999 899999999999988788654
No 347
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.044 Score=50.65 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccch
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 195 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~ 195 (276)
++|.|++ |+++|..|.+.|++|+++|+.+... .......+.+.|++++.+...... .-
T Consensus 5 viG~G~s-----G~s~a~~l~~~G~~V~~~D~~~~~~----------------~~~~~~~l~~~gi~~~~g~~~~~~-~~ 62 (459)
T PRK02705 5 VIGLGRS-----GIAAARLLKAQGWEVVVSDRNDSPE----------------LLERQQELEQEGITVKLGKPLELE-SF 62 (459)
T ss_pred EEccCHH-----HHHHHHHHHHCCCEEEEECCCCchh----------------hHHHHHHHHHcCCEEEECCccchh-hh
Confidence 4899999 9999999999999999999876421 112233466779999876533210 00
Q ss_pred hhhhcccCEEEEcCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLP 218 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~ 218 (276)
+.....+|.||++.|-. +..|.
T Consensus 63 ~~~~~~~d~vv~s~gi~-~~~~~ 84 (459)
T PRK02705 63 QPWLDQPDLVVVSPGIP-WDHPT 84 (459)
T ss_pred hHHhhcCCEEEECCCCC-CCCHH
Confidence 11223589999999976 55543
No 348
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.94 E-value=0.25 Score=45.16 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-----c----c-chhhhh-cccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-----D----I-AAKELY-EEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-----~----~-~~~~~~-~~~D~vVlAtG~~ 212 (276)
+.++...+.+.+.+.|+++++|++|.. + . +.+..+ +.++.||.|.|..
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchh
Confidence 456777888888899999999999861 1 0 111112 8999999999976
No 349
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.93 E-value=0.0077 Score=55.74 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=32.5
Q ss_pred hhccCCCCCCCCCCCCcchhhhhC------CcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIV------GHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~------G~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|.+ |+.+|..|++. |.+|+|+|+.+++||..+
T Consensus 5 ~VIGaGis-----GL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 5 VVIGGGIT-----GLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred EEECCCHH-----HHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 34999999 99999999986 378999999999999654
No 350
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.92 E-value=0.02 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.4
Q ss_pred chHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 48 SYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 48 ~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+||+. |+++|++|+|+|+++++||.+.
T Consensus 1 ~AA~~-L~~~G~~v~vlEa~~~~GG~~~ 27 (419)
T TIGR03467 1 SAAVE-LARAGARVTLFEARPRLGGRAR 27 (419)
T ss_pred ChHHH-HHhCCCceEEEecCCCCCCcee
Confidence 58889 8999999999999999999763
No 351
>KOG2415|consensus
Probab=94.92 E-value=0.038 Score=49.61 Aligned_cols=31 Identities=32% Similarity=0.247 Sum_probs=26.2
Q ss_pred ccchhchHHHHHhh------CCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHL------VGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~------~G~~V~l~Ek~~~lGG~~ 74 (276)
+||||+||++ +.| +..+|.|+||..++||..
T Consensus 85 GPAGLsaAIr-lKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 85 GPAGLSAAIR-LKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred CchhHHHHHH-HHHHHHhcCCceEEEEEeeccccCCce
Confidence 5999999999 544 467899999999999865
No 352
>PLN02661 Putative thiazole synthesis
Probab=94.90 E-value=0.029 Score=49.76 Aligned_cols=31 Identities=23% Similarity=0.123 Sum_probs=26.7
Q ss_pred ccchhchHHHHHhhC-CCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLV-GHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~-G~~V~l~Ek~~~lGG~~ 74 (276)
+|+|+.||+. |++. |++|+|+||+..+||-.
T Consensus 101 G~AGl~AA~~-La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 101 GSAGLSCAYE-LSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred HHHHHHHHHH-HHHcCCCeEEEEecCcccccce
Confidence 5999999999 7765 99999999998887733
No 353
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.021 Score=51.66 Aligned_cols=33 Identities=33% Similarity=0.295 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
.=+||.||+. +.+.||+|+|+|.++++||-+..
T Consensus 16 GlaGL~AA~e-L~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 16 GLAGLSAAYE-LKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred chHHHHHHHH-HhhcCcEEEEEeccCCcCceeEE
Confidence 4689999999 89999999999999999998743
No 354
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.81 E-value=0.0075 Score=55.65 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.3
Q ss_pred ccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 110 KDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 110 ~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
.++.|.|||+||+ |+.+|..|++.|++|+|+|+..
T Consensus 38 ~~~DViIVGaGPA-----G~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPA-----GACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHH-----HHHHHHHHHhCCCcEEEEecCC
Confidence 3445556999999 9999999999999999999874
No 355
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.80 E-value=0.0079 Score=54.32 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=29.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
|.|||+|++ |+.+|..|++.|++|+|+|+.+.+
T Consensus 7 V~IvGaGia-----Gl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 7 VLIVGGGIG-----GLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred EEEECCcHH-----HHHHHHHHHhCCCcEEEEeeCccc
Confidence 445999999 999999999999999999998754
No 356
>PRK09126 hypothetical protein; Provisional
Probab=94.78 E-value=0.0074 Score=54.44 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
+.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 6 viIvGgG~a-----Gl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 6 IVVVGAGPA-----GLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred EEEECcCHH-----HHHHHHHHHhCCCcEEEEeCCCc
Confidence 445999999 99999999999999999998764
No 357
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.73 E-value=0.009 Score=53.57 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=28.6
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|||+||+ |+.+|..|++.|.+|+|+|+.+.
T Consensus 3 iIvGaG~a-----Gl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 3 VIVGGGMV-----GLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEECCCHH-----HHHHHHHHhcCCCEEEEEeCCCc
Confidence 34999999 99999999999999999999874
No 358
>PLN02676 polyamine oxidase
Probab=94.72 E-value=0.022 Score=53.21 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCC-eEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGH-SVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~-~V~l~Ek~~~lGG~~~ 75 (276)
+++||+||+. +++.|+ +|+|+|+++++||.+.
T Consensus 35 G~sGL~aa~~-L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 35 GMSGISAAKT-LSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred CHHHHHHHHH-HHHcCCCcEEEecCCCCCCCcce
Confidence 6899999999 899998 6999999999999764
No 359
>PRK08013 oxidoreductase; Provisional
Probab=94.71 E-value=0.0086 Score=54.34 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 6 V~IvGaGpa-----Gl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 6 VVIAGGGMV-----GLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred EEEECcCHH-----HHHHHHHHhhCCCEEEEEeCCCC
Confidence 445999999 99999999999999999998764
No 360
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.68 E-value=0.52 Score=41.41 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=26.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC--CCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND--RVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~--~lGG~~ 74 (276)
.-|||.||.. +|.+|.+|.|+|... .+||+.
T Consensus 14 glaglvaa~e-lA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 14 GLAGLVAAAE-LADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cHHHHHHHHH-HHhcCceEEEEccccccccccee
Confidence 5689999999 899999999999844 489876
No 361
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.67 E-value=0.24 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=21.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+-|||.+|+. +++. ++|+|+-|++
T Consensus 16 G~AGL~~AL~-L~~~-~~V~vltk~~ 39 (518)
T COG0029 16 GLAGLTAALS-LAPS-FRVTVLTKGP 39 (518)
T ss_pred cHHHHHHHHh-CCCC-CcEEEEeCCC
Confidence 5789999999 7777 9999999976
No 362
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.67 E-value=0.022 Score=51.72 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=24.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+++|+. |++.|++|+|+||.+..
T Consensus 27 G~aGl~~A~~-L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 27 GIVGLTLAAA-LKDSGLRIALIEAQPAE 53 (415)
T ss_pred CHHHHHHHHH-HhcCCCEEEEEecCCcc
Confidence 6999999999 89999999999998754
No 363
>PRK07236 hypothetical protein; Provisional
Probab=94.67 E-value=0.0079 Score=54.25 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|||+|++ |+++|..|++.|++|+|+|+.+.
T Consensus 9 ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 9 AVVIGGSLG-----GLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCCEEEEecCCC
Confidence 445999999 99999999999999999998763
No 364
>PLN02612 phytoene desaturase
Probab=94.67 E-value=0.02 Score=54.48 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=33.8
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
.+.|||+|.+ |+.+|..|++.|++|+|+|+.+++||..
T Consensus 95 ~v~iiG~G~~-----Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 95 KVVIAGAGLA-----GLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CEEEECCCHH-----HHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 3445999999 9999999999999999999999888854
No 365
>PRK06753 hypothetical protein; Provisional
Probab=94.63 E-value=0.022 Score=51.00 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=25.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|||+++|+. |++.|++|+||||++.+.
T Consensus 9 G~aGl~~A~~-L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 9 GIGGLTAAAL-LQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCccc
Confidence 6999999999 899999999999987543
No 366
>PLN02568 polyamine oxidase
Probab=94.62 E-value=0.012 Score=55.60 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCC-----cEEEEEcCCCccceeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVG-----HSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G-----~~Vtvie~~~~~gg~~~ 156 (276)
+.|||+|.+ |+.+|..|++.| ++|+|+|+.+++||.+.
T Consensus 8 v~iiGaG~a-----Gl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 8 IVIIGAGMA-----GLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred EEEECCCHH-----HHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 445999999 999999999887 89999999999999664
No 367
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.61 E-value=0.023 Score=53.96 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=29.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+ +||+||+. |++.|.+|+|+||.+.+||.+.+
T Consensus 25 G-~G~~aA~~-a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 25 G-TGMAAALA-AHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred c-HHHHHHHH-HHHCCCcEEEEecCCCCcCcccC
Confidence 5 79999999 99999999999999899998854
No 368
>PLN02529 lysine-specific histone demethylase 1
Probab=94.61 E-value=0.01 Score=57.72 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=33.1
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
+.|||+|++ |+++|..|++.|++|+|+|+.+++||..
T Consensus 163 v~viGaG~a-----Gl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 163 VIIVGAGLA-----GLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred EEEECcCHH-----HHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 445999999 9999999999999999999999887743
No 369
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=94.61 E-value=0.0093 Score=55.45 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=33.0
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
|||+|.+ |+.+|..|++.|++|+|+|+.+.+||...
T Consensus 4 IiG~G~a-----Gl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 4 IVGAGLA-----GLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred EECCCHH-----HHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 5999999 99999999999999999999999988543
No 370
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.59 E-value=0.11 Score=47.87 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=26.2
Q ss_pred ccchhchHHHHHhh----CCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHL----VGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~----~G~~V~l~Ek~~~lGG~~ 74 (276)
+-|+|+||.. |-+ .|.+++|+|+.+.+||.+
T Consensus 11 GiAsLAAAvf-LIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 11 GIASLAAAVF-LIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CHHHHHhhhh-hhccCCCCccceEEEeCCCCCCCcc
Confidence 4689999999 533 688999999999999977
No 371
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.55 E-value=0.0091 Score=53.95 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=28.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~ 148 (276)
|.|+|+||+ |+.+|..|++.|.+|+|||+.
T Consensus 5 V~IvGaG~a-----Gl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 5 VAIVGAGPA-----GLALALALARAGLDVTLLERA 34 (387)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCcEEEEccC
Confidence 445999999 999999999999999999998
No 372
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.54 E-value=0.011 Score=53.30 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=29.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
+.|+|+||+ |+.+|..|++.|.+|+|+|+.+..
T Consensus 8 v~IvGgG~a-----Gl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 8 VVVVGGGLV-----GASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred EEEECcCHH-----HHHHHHHHHhCCCeEEEEecCCCc
Confidence 445999999 999999999999999999988654
No 373
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.49 E-value=0.026 Score=50.57 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=24.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+++|+. +++.|++|+||||.+..
T Consensus 8 G~aGl~~A~~-L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 8 GMVGLALALA-LARSGLKIALIEATPAE 34 (385)
T ss_pred CHHHHHHHHH-HhcCCCEEEEEeCCCcc
Confidence 6999999999 89999999999998754
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.49 E-value=0.11 Score=52.22 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+.|||.||+. |++.|.+|+|+||...
T Consensus 22 G~AGl~AAl~-Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 22 GTAGTMAALT-AAEHGANVLLLEKAHV 47 (897)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEecccc
Confidence 6899999999 8999999999999763
No 375
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.48 E-value=0.0091 Score=54.21 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=28.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
+.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 3 VvIVGaGPA-----G~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 3 VAVVGGGPA-----GASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred EEEECCcHH-----HHHHHHHHHhCCCcEEEEecCCC
Confidence 345999999 99999999999999999998754
No 376
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.48 E-value=0.01 Score=53.52 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=28.1
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
|.|+|+||+ |+.+|..|++.|++|+|||+.+
T Consensus 6 v~IvGgG~a-----Gl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 6 IAVVGGGMV-----GAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred EEEECcCHH-----HHHHHHHHHhCCCcEEEEcCCC
Confidence 445999999 9999999999999999999764
No 377
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.37 E-value=0.012 Score=52.98 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=29.2
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
..|.|+|+||+ |+.+|..|++.|++|+|+|+.+
T Consensus 6 ~dViIvGgG~a-----Gl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMV-----GAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHH-----HHHHHHHHhcCCCEEEEEcCCC
Confidence 34455999999 9999999999999999999875
No 378
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.33 E-value=0.033 Score=52.38 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=28.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+ |||+||+. |++.|.+|+|+||.+.+||...+
T Consensus 16 G-aGl~aA~~-aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 16 G-GGVAGAYT-AAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred h-HHHHHHHH-HHHCCCcEEEEecCCCCCcceec
Confidence 7 99999999 89999999999999888886644
No 379
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.31 E-value=0.25 Score=46.26 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=26.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+..|...|+. ||.||++|+|+|+++...|+-
T Consensus 21 GitG~GiArD-aA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 21 GITGAGIARD-AAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred chhhHHHHHH-HHhCCCeEEEEecCcccCccc
Confidence 4568889999 899999999999999777765
No 380
>PRK07538 hypothetical protein; Provisional
Probab=94.27 E-value=0.011 Score=53.83 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=29.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|.|+|+||+ |+.+|..|++.|++|+|||+.+.
T Consensus 3 V~IVGaG~a-----Gl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 3 VLIAGGGIG-----GLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred EEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCCc
Confidence 345999999 99999999999999999998874
No 381
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.27 E-value=0.013 Score=52.66 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=28.2
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCC-cEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVG-HSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G-~~Vtvie~~~~ 150 (276)
.|||+||+ |+.+|..|++.| ++|+|+|+.+.
T Consensus 3 ~IvGaG~a-----Gl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 3 IIVGGGLV-----GLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEECccHH-----HHHHHHHHhcCCCceEEEEeCCCc
Confidence 34999999 999999999999 99999998753
No 382
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.24 E-value=0.035 Score=52.69 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
+.|||+||+. |++.|.+|+|+||.+.+||.+.+
T Consensus 15 G~aGl~aA~~-~a~~G~~v~liEk~~~~gG~~~~ 47 (557)
T PRK12844 15 GGGGMCAALA-AADSGLEPLIVEKQDKVGGSTAM 47 (557)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCceece
Confidence 6899999999 89999999999999888997643
No 383
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.23 E-value=0.013 Score=52.86 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=29.2
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.+.|||+||+ |+.+|..|++.|.+|+|||+.+.
T Consensus 9 dViIVGaG~~-----Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 9 DIAVIGGGPA-----GLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CEEEECcCHH-----HHHHHHHHhcCCCeEEEEeCCCC
Confidence 3445999999 99999999999999999998753
No 384
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.19 E-value=0.085 Score=47.10 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=47.6
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcE--EEeeeeecccc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIE--FKTNINVGKDI 193 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--i~~~~~v~~~~ 193 (276)
++|.|-. |+..|.-|++.||+|+.+|..+.-=..++.+..+... + .+.+.+++..-+ +.+-+
T Consensus 5 viGtGYV-----GLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~E-p----gLe~ll~~~~~~gRl~fTt------ 68 (414)
T COG1004 5 VIGTGYV-----GLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYE-P----GLEELLKENLASGRLRFTT------ 68 (414)
T ss_pred EECCchH-----HHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcC-c----cHHHHHHhccccCcEEEEc------
Confidence 4788877 9999999999999999999776432233333332111 1 122223332221 22222
Q ss_pred chhhhhcccCEEEEcCCCC
Q psy12810 194 AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~ 212 (276)
+-+.-...+|.++||+|.-
T Consensus 69 d~~~a~~~adv~fIavgTP 87 (414)
T COG1004 69 DYEEAVKDADVVFIAVGTP 87 (414)
T ss_pred CHHHHHhcCCEEEEEcCCC
Confidence 1112234789999999974
No 385
>PRK07045 putative monooxygenase; Reviewed
Probab=94.17 E-value=0.032 Score=50.28 Aligned_cols=27 Identities=37% Similarity=0.267 Sum_probs=24.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+.+|+. ++++|++|+||||.+.+
T Consensus 14 GpaGl~~A~~-L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 14 GIAGVALAHL-LGARGHSVTVVERAARN 40 (388)
T ss_pred cHHHHHHHHH-HHhcCCcEEEEeCCCcc
Confidence 6999999999 89999999999998754
No 386
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.13 E-value=0.02 Score=49.58 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=32.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
|+|+|-+ |...|+.++++|++|.|+|+.+++||..
T Consensus 6 IVGaGls-----G~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 6 IVGAGLS-----GAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred EECCchh-----HHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 4899999 9999999999999999999999999854
No 387
>PRK06126 hypothetical protein; Provisional
Probab=94.11 E-value=0.014 Score=55.17 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 9 ~VlIVGaGpa-----GL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 9 PVLIVGGGPV-----GLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CEEEECCCHH-----HHHHHHHHHHCCCcEEEEeCCCC
Confidence 3445999999 99999999999999999998763
No 388
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.11 E-value=0.013 Score=53.19 Aligned_cols=30 Identities=13% Similarity=0.054 Sum_probs=27.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|+|+|++ |+++|..|++.|++|+|+|+.+.
T Consensus 7 VIGGGlA-----GleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 7 VIGAGLA-----GSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred EECCCHH-----HHHHHHHHHhCCCcEEEEEccCc
Confidence 4999999 99999999999999999997554
No 389
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.06 E-value=0.12 Score=51.18 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=23.7
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~ 69 (276)
+||||.+|+. ++++ |++|+|+||++.
T Consensus 9 GpAGLaaAi~-L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 9 GPAGLYFALL-MKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CHHHHHHHHH-HHHhCCCCeEEEEecCCC
Confidence 6999999999 7887 999999999875
No 390
>PRK09126 hypothetical protein; Provisional
Probab=94.05 E-value=0.036 Score=49.92 Aligned_cols=27 Identities=33% Similarity=0.229 Sum_probs=24.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+++|+. ++++|++|+|+||.+..
T Consensus 12 G~aGl~~A~~-L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 12 GPAGLSFARS-LAGSGLKVTLIERQPLA 38 (392)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEeCCCcc
Confidence 6999999999 89999999999998743
No 391
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.04 E-value=0.041 Score=47.14 Aligned_cols=29 Identities=17% Similarity=-0.075 Sum_probs=25.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG 72 (276)
+|||+.+|+. +++.|.+|+|+||.+..+.
T Consensus 9 G~aGl~~A~~-l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 9 GPAGASAAYR-LADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeccCCCCc
Confidence 6999999999 8999999999999876553
No 392
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.96 E-value=0.045 Score=51.89 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC--CCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND--RVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~--~lGG~~~~ 76 (276)
+.|||.||+. |++.|.+|+|+||.+ .+||...+
T Consensus 13 G~AGl~AAl~-Aa~~G~~VivlEK~~~~~~GG~s~~ 47 (549)
T PRK12834 13 GLAGLVAAAE-LADAGKRVLLLDQENEANLGGQAFW 47 (549)
T ss_pred CHHHHHHHHH-HHHCCCeEEEEeCCCCCCCCCceec
Confidence 6899999999 999999999999988 78886643
No 393
>PRK05868 hypothetical protein; Validated
Probab=93.95 E-value=0.041 Score=49.47 Aligned_cols=28 Identities=25% Similarity=0.084 Sum_probs=25.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|+|+++|+. ++++|++|+||||.+.+.
T Consensus 10 G~aGl~~A~~-L~~~G~~v~viE~~~~~~ 37 (372)
T PRK05868 10 SVAGTAAAYW-LGRHGYSVTMVERHPGLR 37 (372)
T ss_pred CHHHHHHHHH-HHhCCCCEEEEcCCCCCC
Confidence 6999999999 899999999999987543
No 394
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.92 E-value=0.036 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=24.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+++|+. |+++|++|+||||.+.
T Consensus 11 G~aGl~~A~~-L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 11 GPSGLLLGQL-LHKAGIDNVILERQSR 36 (390)
T ss_pred cHHHHHHHHH-HHHCCCCEEEEECCCC
Confidence 6999999999 8999999999999874
No 395
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.88 E-value=0.016 Score=52.15 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=27.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~ 148 (276)
+.|+|+||+ |+.+|..|++.|++|+|+|+.
T Consensus 4 V~IvGgG~~-----Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 4 TVILGCGLS-----GMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred EEEECCCHH-----HHHHHHHHHcCCCeEEEecCC
Confidence 345999999 999999999999999999975
No 396
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.87 E-value=0.038 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+|+|+++|+. +++.|++|+|||+.+
T Consensus 12 G~aGl~~A~~-L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 12 GMVGAATALG-FAKQGRSVAVIEGGE 36 (384)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEcCCC
Confidence 7999999999 899999999999864
No 397
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=0.089 Score=48.90 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=27.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
.|.+||+|-+ |+++|...++.|.++.++....
T Consensus 6 DVIVIGgGHA-----G~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHA-----GVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCcc-----chHHHHhhhccCCeEEEEEcCC
Confidence 3445999999 9999999999999998887554
No 398
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.84 E-value=0.014 Score=51.34 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=27.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
|||+|.. |+.+|..|++.|++|+|+|+..
T Consensus 4 IIGaGi~-----G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 4 IIGAGIA-----GLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EECTSHH-----HHHHHHHHHHTTSEEEEEESSS
T ss_pred EECcCHH-----HHHHHHHHHHCCCeEEEEeecc
Confidence 4999999 9999999999999999999984
No 399
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.83 E-value=0.17 Score=47.65 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc-c----------c----chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK-D----------I----AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~-~----------~----~~~~~~~~~D~vVlAtG~~ 212 (276)
+..+...+...+.++|+++++++.|+. . . +++..++.++.||+|+|.+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 455666777788899999999887751 0 0 1222368899999999987
No 400
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.81 E-value=0.043 Score=49.74 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=24.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+++|+. ++++|++|+|+||.+.+
T Consensus 11 GiaGl~~A~~-L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 11 GVAGLSAALE-LAARGWAVTIIEKAQEL 37 (400)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCcc
Confidence 6999999999 89999999999998754
No 401
>PRK05868 hypothetical protein; Validated
Probab=93.77 E-value=0.018 Score=51.82 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=28.4
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
|+|+|++ |+.+|..|++.|++|+|+|+.+..
T Consensus 6 IvGgG~a-----Gl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 6 VSGASVA-----GTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred EECCCHH-----HHHHHHHHHhCCCCEEEEcCCCCC
Confidence 4999999 999999999999999999988754
No 402
>PRK07538 hypothetical protein; Provisional
Probab=93.76 E-value=0.043 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=25.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|||+++|+. ++++|++|+||||.+.+.
T Consensus 9 G~aGl~~A~~-L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 9 GIGGLTLALT-LHQRGIEVVVFEAAPELR 36 (413)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEEcCCccc
Confidence 6999999999 899999999999987553
No 403
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.75 E-value=0.016 Score=52.77 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=29.0
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCC-cEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVG-HSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G-~~Vtvie~~~~~ 151 (276)
|.|||+|++ |+.+|..|++.| .+|+|+|+.+.+
T Consensus 3 V~IiGgGia-----Gla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 3 VAIIGGGIA-----GVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred EEEECCCHH-----HHHHHHHHHhcCCCCEEEEecCCcC
Confidence 345999999 999999999998 599999998764
No 404
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.054 Score=45.16 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=28.0
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.++|+|.. |...|+.|.+.|++|+++|+.+.
T Consensus 4 iIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 4 IIIGAGRV-----GRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEECCcHH-----HHHHHHHHHhCCCceEEEEcCHH
Confidence 35899999 99999999999999999998764
No 405
>PRK07588 hypothetical protein; Provisional
Probab=93.69 E-value=0.045 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=24.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+++|+. +++.|++|+|+||.+..
T Consensus 9 G~aGl~~A~~-L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 9 GIAGPTLAYW-LRRYGHEPTLIERAPEL 35 (391)
T ss_pred cHHHHHHHHH-HHHCCCceEEEeCCCCc
Confidence 6999999999 89999999999997654
No 406
>PLN03000 amine oxidase
Probab=93.69 E-value=0.045 Score=54.11 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+++|+.||+. +++.|++|+|+|+++++||.+.
T Consensus 193 G~aGL~aA~~-L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 193 GLSGLAAARQ-LMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEEccCcCCCCcc
Confidence 6899999999 8999999999999999999773
No 407
>KOG1346|consensus
Probab=93.68 E-value=0.094 Score=47.12 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCCCCcchhhhh----CCcEEE-EEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeecc
Q psy12810 117 TNHTPQSDNQTKHCPPLIVNI----VGHSVT-VFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 191 (276)
Q Consensus 117 iG~gp~~~g~~Gl~~A~~l~~----~G~~Vt-vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 191 (276)
||.|-- |-+.|..|.+ .|.+|. ||+..-..+ ..++..+.++..+.+++.||.++.|..|..
T Consensus 353 iGnGfl-----gSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------kiLPeyls~wt~ekir~~GV~V~pna~v~s 418 (659)
T KOG1346|consen 353 IGNGFL-----GSELACSLKRKYRNEGVEVHQVFEEKYNME---------KILPEYLSQWTIEKIRKGGVDVRPNAKVES 418 (659)
T ss_pred EcCcch-----hhhHHHHHHHhhhccCcEEEEeecccCChh---------hhhHHHHHHHHHHHHHhcCceeccchhhhh
Confidence 777766 8888877654 577775 555332211 123445666677788899999999998751
Q ss_pred c---------cchhhhhcccCEEEEcCCCCCCCCC
Q psy12810 192 D---------IAAKELYEEFDALLLCTGATWPRDL 217 (276)
Q Consensus 192 ~---------~~~~~~~~~~D~vVlAtG~~~p~~~ 217 (276)
. .-.+..++..|.||+|+|-. ||..
T Consensus 419 v~~~~~nl~lkL~dG~~l~tD~vVvavG~e-PN~e 452 (659)
T KOG1346|consen 419 VRKCCKNLVLKLSDGSELRTDLVVVAVGEE-PNSE 452 (659)
T ss_pred hhhhccceEEEecCCCeeeeeeEEEEecCC-Cchh
Confidence 1 11233467899999999998 8764
No 408
>PRK06847 hypothetical protein; Provisional
Probab=93.65 E-value=0.048 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=24.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|||+++|+. |++.|++|+||||++.
T Consensus 13 G~aGl~~A~~-L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 13 GIGGLSAAIA-LRRAGIAVDLVEIDPE 38 (375)
T ss_pred CHHHHHHHHH-HHhCCCCEEEEecCCC
Confidence 6999999999 8999999999999764
No 409
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.65 E-value=0.029 Score=51.59 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=35.0
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.+.|+|+|-+ |+.+|..|++.|++|.++|+++..||.+.
T Consensus 6 DViViGtGL~-----e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 6 DVIVCGTGLK-----ECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred eEEEECCChH-----HHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 3445999999 99999999999999999999999998665
No 410
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.64 E-value=0.018 Score=52.05 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=28.5
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|+|+||+ |+.+|..|++.|++|+|+|+.+.
T Consensus 6 ~IVGaG~a-----Gl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 6 AIIGAGPS-----GLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred EEECccHH-----HHHHHHHHHHCCCCEEEEECCCC
Confidence 34999999 99999999999999999998874
No 411
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.18 Score=46.95 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=37.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeeecCCCCCCCHHHHHHHHHHHHhCCCeEEecccc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 108 (276)
++.||++|.. ++++|++|+++|+++. .......+.+++.||++.++...
T Consensus 25 G~~G~~~A~~-L~~~G~~V~~~d~~~~----------------~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 25 GVSGFAAADA-LLELGARVTVVDDGDD----------------ERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CHHHHHHHHH-HHHCCCEEEEEeCCch----------------hhhHHHHHHHHHcCCEEEECCCc
Confidence 6899999999 8999999999998652 12233446678889999987653
No 412
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.62 E-value=0.018 Score=51.93 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=27.8
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhC---CcEEEEEcCC
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIV---GHSVTVFERN 148 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~---G~~Vtvie~~ 148 (276)
.+.|||+||+ |+.+|..|++. |++|+|+|+.
T Consensus 5 dv~IvGaG~a-----Gl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 5 DVIIVGGGMA-----GATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CEEEECcCHH-----HHHHHHHhhhcccCCCEEEEEeCC
Confidence 3445999999 99999999998 9999999984
No 413
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.55 E-value=0.05 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred ccchhchHHHHHhhCCC-eEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGH-SVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~-~V~l~Ek~~~lG 71 (276)
+||||++|+. |++.|+ +|+||||.+.++
T Consensus 9 GiaGla~A~~-L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 9 GIAGVALALN-LCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CHHHHHHHHH-HHhcCCCCEEEEecCCcCC
Confidence 6999999999 899986 999999987654
No 414
>PRK08013 oxidoreductase; Provisional
Probab=93.55 E-value=0.052 Score=49.26 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=24.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+++|+. ++++|++|+|+||.+.+
T Consensus 12 GpaGl~~A~~-La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 12 GMVGLAVACG-LQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CHHHHHHHHH-HhhCCCEEEEEeCCCCc
Confidence 6999999999 89999999999998753
No 415
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=93.52 E-value=0.019 Score=52.37 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=28.6
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
|+|+|.+ |+++|..|++.|.+|+|||+.+..
T Consensus 5 VIGgGlA-----GleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 5 VIGGGLA-----GSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred EECCCHH-----HHHHHHHHHhCCCcEEEEeccccc
Confidence 4999999 999999999999999999987764
No 416
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.51 E-value=0.05 Score=48.83 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred ccchhchHHHHHhhCC-CeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVG-HSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G-~~V~l~Ek~~~ 69 (276)
+|||+++|+. +++.| ++|+|+||.+.
T Consensus 8 G~aGl~~A~~-L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 8 GLVGLSLALA-LSRLGKIKIALIEANSP 34 (382)
T ss_pred cHHHHHHHHH-HhcCCCceEEEEeCCCc
Confidence 6999999999 89999 99999999764
No 417
>KOG2404|consensus
Probab=93.49 E-value=0.13 Score=44.69 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=30.8
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcccee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL 154 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~ 154 (276)
++||+|-+ |++++..+-..|-.|+++|+...+||.
T Consensus 13 vVIGgGLA-----GLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 13 VVIGGGLA-----GLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred EEECCchh-----hhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 34999999 999999999888889999999988773
No 418
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.48 E-value=0.054 Score=48.91 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=24.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+++|+. ++++|++|+|+||.+.
T Consensus 15 G~aGl~~A~~-La~~G~~v~liE~~~~ 40 (392)
T PRK08773 15 GVVGAACALA-LADAGLSVALVEGREP 40 (392)
T ss_pred CHHHHHHHHH-HhcCCCEEEEEeCCCC
Confidence 6999999999 8999999999999764
No 419
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.47 E-value=0.022 Score=51.62 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=28.1
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
|+|+|++ |+.+|..|++.|++|+|+|+.+.
T Consensus 7 IvGgGia-----Gl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 7 IAGAGVA-----GLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred EECCCHH-----HHHHHHHHHhCCCcEEEEecCCc
Confidence 4999999 99999999999999999998875
No 420
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=93.47 E-value=0.018 Score=52.29 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=30.7
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
|||+|++ |+.+|..+++.|++|+|+|+.+.+|+
T Consensus 2 IIGgG~a-----Gl~aAi~aa~~G~~V~llEk~~~~G~ 34 (400)
T TIGR00275 2 IIGGGAA-----GLMAAITAAREGLSVLLLEKNKKIGK 34 (400)
T ss_pred EEEEeHH-----HHHHHHHHHhcCCcEEEEecCccccc
Confidence 5899999 99999999999999999999998765
No 421
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=93.47 E-value=0.055 Score=48.63 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=24.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+++|+. +++.|++|+|+||.+..
T Consensus 14 G~aGl~~A~~-L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 14 GLVGASLALA-LAQSGLRVALLAPRAPP 40 (388)
T ss_pred CHHHHHHHHH-HHhCCCeEEEEecCCCc
Confidence 6999999999 89999999999998754
No 422
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.45 E-value=0.056 Score=51.62 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
.++|+.||+. |++.|++|+|+||.+.+||.+.+
T Consensus 25 G~aG~~aa~~-~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 25 GAAGMSAALF-AAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCCcccc
Confidence 6899999999 89999999999999889998754
No 423
>PLN02676 polyamine oxidase
Probab=93.43 E-value=0.025 Score=52.84 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=33.4
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCc-EEEEEcCCCccceeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGH-SVTVFERNDRVGGLLQ 156 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~-~Vtvie~~~~~gg~~~ 156 (276)
+.|||+|++ |+.+|..|++.|. +|+|+|+.+++||.+.
T Consensus 29 v~IIGaG~s-----GL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 29 VIIVGAGMS-----GISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred EEEECCCHH-----HHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 334999999 9999999999998 6999999999988553
No 424
>PRK12839 hypothetical protein; Provisional
Probab=93.43 E-value=0.057 Score=51.47 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~~ 76 (276)
..+||+||+. |++.|.+|+|+||.+.+||.+.+
T Consensus 17 G~aG~~aa~~-~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 17 GAGGLSAAVA-AAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCCccccc
Confidence 6899999999 89999999999999889998754
No 425
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.41 E-value=0.63 Score=43.61 Aligned_cols=153 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred hhchHHHHHhhCC--CeEEEeccC----------CCCCceeeecCCCCCCC----------HHHHHHHHHHHHhCCCeEE
Q psy12810 46 TLSYHISIQHLVG--HSVTVFERN----------DRVGGLLQYGIPTMKLS----------KEVVQRRVKLLAAEGIEFK 103 (276)
Q Consensus 46 Gl~aA~~~aa~~G--~~V~l~Ek~----------~~lGG~~~~~~~~~~~~----------~~~~~~~~~~l~~~gv~~~ 103 (276)
|+++|+. |++++ .+|+|+||. ..-+|+...|.-..... ..+...+...+...+.+..
T Consensus 57 G~a~A~~-La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~~~~~L~~~~~~~~ 135 (497)
T PTZ00383 57 GTALFYT-LSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRNYLTKLPPSERDSI 135 (497)
T ss_pred HHHHHHH-HHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Q ss_pred eccccCccchhhhccCCCCCCCCCCCCcchhhhh-------CCcEEEEEcC-------------------CCccceeeee
Q psy12810 104 TNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNI-------VGHSVTVFER-------------------NDRVGGLLQY 157 (276)
Q Consensus 104 ~~~~v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~-------~G~~Vtvie~-------------------~~~~gg~~~~ 157 (276)
....-.-.+.. +-+-...|.+ .+..+.++++ .+..++.+.-
T Consensus 136 ~~~~G~l~va~-------------~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p 202 (497)
T PTZ00383 136 IFKMQKMVLGV-------------GEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVP 202 (497)
T ss_pred eeeCCEEEEEE-------------CHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeC
Q ss_pred cCCCCCCcHHHHHHHHHHHHh----cC--cEEEeeeeec---------cccchhhhhcccCEEEEcCCCC
Q psy12810 158 GIPTMKLSKEVVQRRVKLLAA----EG--IEFKTNINVG---------KDIAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~----~g--v~i~~~~~v~---------~~~~~~~~~~~~D~vVlAtG~~ 212 (276)
.--....+..+...+.+.+.+ .| +++++++.|+ ..+..+..++.+|.||+|+|.+
T Consensus 203 ~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 203 NELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGY 272 (497)
T ss_pred CCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChh
No 426
>PRK07236 hypothetical protein; Provisional
Probab=93.30 E-value=0.054 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=23.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+|+|+++|+. |++.|++|+||||.+
T Consensus 15 G~aGl~~A~~-L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 15 SLGGLFAALL-LRRAGWDVDVFERSP 39 (386)
T ss_pred CHHHHHHHHH-HHhCCCCEEEEecCC
Confidence 6999999999 899999999999976
No 427
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.29 E-value=0.026 Score=50.54 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=28.8
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
+.|||+|.. |+++|..|++.|++|+|+|+...
T Consensus 6 v~IIGgGi~-----G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 6 VIVIGLGSM-----GSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred EEEECCCHH-----HHHHHHHHHHCCCeEEEEecccC
Confidence 445999999 99999999999999999998764
No 428
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=93.21 E-value=0.055 Score=48.88 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=23.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERN 67 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~ 67 (276)
+|||++||+. +++.|++|+|+|++
T Consensus 9 GpAG~~aA~~-La~~G~~V~l~E~~ 32 (388)
T TIGR02023 9 GPSGATAAET-LARAGIETILLERA 32 (388)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEECC
Confidence 6999999999 89999999999997
No 429
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.18 E-value=0.033 Score=50.41 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.3
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
+.|+|+|-+ |+.+|..|.+.|++|+|+|..+++||
T Consensus 10 viivGaGla-----GL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 10 VIIVGAGLA-----GLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred EEEECCchH-----HHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 444999999 99999999999999999999999987
No 430
>PRK06184 hypothetical protein; Provisional
Probab=93.17 E-value=0.062 Score=50.33 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=24.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+||++|+. |++.|++|+|+||.+.+
T Consensus 12 GpaGl~~A~~-La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 12 GPTGLTLAIE-LARRGVSFRLIEKAPEP 38 (502)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEeCCCCC
Confidence 6999999999 89999999999998754
No 431
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.15 E-value=0.026 Score=55.41 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=33.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
+.|||+|++ |+.+|..|++.|++|+|+|+.+++||-.
T Consensus 241 v~IiGaG~a-----Gl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 241 VVVVGAGLA-----GLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred EEEECcCHH-----HHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 446999999 9999999999999999999999998854
No 432
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.14 E-value=0.025 Score=51.40 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=27.5
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~ 148 (276)
|.|+|+||+ |+.+|..|++.|++|+|+|+.
T Consensus 7 V~IvGaG~~-----Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 7 VAIIGGGMV-----GLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred EEEECccHH-----HHHHHHHHHhCCCEEEEEcCC
Confidence 445999999 999999999999999999985
No 433
>PLN02976 amine oxidase
Probab=93.13 E-value=0.062 Score=55.62 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=29.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCceee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~~ 75 (276)
+|+|+.||+. ++++|++|+|||+++.+||.+.
T Consensus 702 G~AGLaAA~~-L~~~G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 702 GPAGLTAARH-LQRQGFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred hHHHHHHHHH-HHHCCCcEEEEeeccCCCCcee
Confidence 6999999999 8999999999999999999874
No 434
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=93.11 E-value=0.022 Score=51.85 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.6
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
|||+|.+ |+.+|..+++.|.+|+|+|+.+..||
T Consensus 4 VIG~G~A-----Gl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 4 VIGGGLA-----GLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp EE-SSHH-----HHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred EECCCHH-----HHHHHHHHhhhcCeEEEEEeeccccc
Confidence 4999999 99999999999999999999998655
No 435
>PRK07121 hypothetical protein; Validated
Probab=93.05 E-value=0.03 Score=52.36 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=31.9
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
..|.|||+|.+ |+.+|..+++.|.+|+|+|+.+..||
T Consensus 21 ~DVvVVGaG~A-----Gl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 21 ADVVVVGFGAA-----GACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred cCEEEECcCHH-----HHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 34445999999 99999999999999999999887654
No 436
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.04 E-value=0.061 Score=48.62 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=24.1
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+.+|+. +++.|++|+|+||.+.
T Consensus 11 GpaGl~~A~~-L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 11 GPAGLLLGQL-LHLAGIDSVVLERRSR 36 (392)
T ss_pred CHHHHHHHHH-HHhcCCCEEEEEcCCc
Confidence 6999999999 8999999999999864
No 437
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.03 E-value=0.2 Score=46.18 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=50.2
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHh--cCcEEEeeeeecccc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAA--EGIEFKTNINVGKDI 193 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~~~ 193 (276)
++|.|.. |+++|..|+++|++|+++|..+.. + . ...+++ .|+++..+...
T Consensus 10 v~G~g~~-----G~~~a~~l~~~g~~v~~~d~~~~~--------------~-~----~~~l~~~~~gi~~~~g~~~---- 61 (445)
T PRK04308 10 VAGLGGT-----GISMIAYLRKNGAEVAAYDAELKP--------------E-R----VAQIGKMFDGLVFYTGRLK---- 61 (445)
T ss_pred EECCCHH-----HHHHHHHHHHCCCEEEEEeCCCCc--------------h-h----HHHHhhccCCcEEEeCCCC----
Confidence 3899988 999999999999999999876531 0 0 112333 47877765411
Q ss_pred chhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 194 AAKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 194 ~~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
......+|.||++.|-. |..|.+
T Consensus 62 --~~~~~~~d~vv~spgi~-~~~p~~ 84 (445)
T PRK04308 62 --DALDNGFDILALSPGIS-ERQPDI 84 (445)
T ss_pred --HHHHhCCCEEEECCCCC-CCCHHH
Confidence 11123689999999987 766654
No 438
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.02 E-value=0.027 Score=52.85 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=32.3
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
..|.|||+|.+ |+.+|..+++.|.+|+|+|+.+.+||
T Consensus 62 ~DVvVVG~G~A-----Gl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 62 YDIVIVGAGGA-----GMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred CCEEEECcCHH-----HHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 34445999999 99999999999999999999987665
No 439
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=92.96 E-value=0.03 Score=52.79 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.2
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhC----CcEEEEEcCCCccceee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIV----GHSVTVFERNDRVGGLL 155 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~----G~~Vtvie~~~~~gg~~ 155 (276)
+.|||+|.+ |+++|.+|.+. |.+|+|+|+.+.+||.+
T Consensus 25 a~IIGaGiA-----GLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 25 AYIIGSGLA-----SLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred EEEECCCHH-----HHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 345999999 99999999985 68999999999988754
No 440
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=92.95 E-value=0.027 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=29.9
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
...|.|+|+|++ |+.+|..|++.|++|+|||+.+
T Consensus 81 ~~~VlIVGgGIa-----GLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIG-----GLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHH-----HHHHHHHHHhcCCeEEEEeccc
Confidence 344556999999 9999999999999999999865
No 441
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.92 E-value=0.072 Score=50.90 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=28.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
+.|||+||+. |++.|.+|+|+||.+.+||..
T Consensus 20 G~AGl~AA~~-aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 20 GGGGMTAALT-AAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cHHHHHHHHH-HHHCCCcEEEEEcCCCCCchH
Confidence 6899999999 899999999999998888854
No 442
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.88 E-value=0.032 Score=50.69 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=28.3
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
|||+|-. |+++|..|++.|++|+|+|+++.+
T Consensus 6 IIGaG~~-----G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 6 VIGAGIT-----GVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred EECCCHH-----HHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4999999 999999999999999999998743
No 443
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=92.86 E-value=0.17 Score=48.12 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhcCcEEEeeeeecc--------------cc-chhhhhcccCEEEEcCCCC
Q psy12810 165 SKEVVQRRVKLLAAEGIEFKTNINVGK--------------DI-AAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 165 ~~~~~~~~~~~l~~~gv~i~~~~~v~~--------------~~-~~~~~~~~~D~vVlAtG~~ 212 (276)
...+...+.+.+.+.||+++.++.++. +. ++....+.++.||+|||..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 456777777778888999999887641 01 1222357789999999975
No 444
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.73 E-value=0.039 Score=51.90 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.3
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
.|.|||+| + |+.+|..+++.|.+|+|+|+.+..||
T Consensus 9 DVvVVG~G-a-----Gl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 9 DVLVAGSG-G-----GVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CEEEECch-H-----HHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 34459999 9 99999999999999999999886543
No 445
>KOG0685|consensus
Probab=92.70 E-value=0.035 Score=50.50 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=32.2
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCc-EEEEEcCCCccceeee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGH-SVTVFERNDRVGGLLQ 156 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~-~Vtvie~~~~~gg~~~ 156 (276)
|+|||+|.+ |+.+|..|-+.|. +|+|+|..+++||-.+
T Consensus 24 IvIIGAG~A-----GLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 24 IVIIGAGIA-----GLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred EEEECCchH-----HHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 344999999 9999999997765 6999999999998553
No 446
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.69 E-value=0.082 Score=48.20 Aligned_cols=26 Identities=15% Similarity=-0.042 Sum_probs=23.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+++|++||+. +|++|++|+|+|+++.
T Consensus 11 GlAGleAAla-LAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 11 GLAGSEAAWQ-LAKRGVPVELYEMRPV 36 (436)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEEccCc
Confidence 6999999999 8999999999997443
No 447
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=92.68 E-value=0.037 Score=50.81 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhCC-cEEEEEcCCCccce
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVG-HSVTVFERNDRVGG 153 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G-~~Vtvie~~~~~gg 153 (276)
|||+|.+ |+.+|..+++.| .+|+|+|+.+..||
T Consensus 4 VVG~G~A-----Gl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 4 VVGSGFA-----GLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred EECCCHH-----HHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 4999999 999999999999 99999999887643
No 448
>PLN02985 squalene monooxygenase
Probab=92.60 E-value=0.035 Score=52.20 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=28.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
.+.|+|+|++ |+.+|..|++.|++|+|+|+.+
T Consensus 45 DViIVGAG~a-----GlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 45 DVIIVGAGVG-----GSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred eEEEECCCHH-----HHHHHHHHHHcCCeEEEEECcC
Confidence 3445999999 9999999999999999999874
No 449
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.52 E-value=0.084 Score=48.25 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=23.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+++|++||+. +|++|++|+|||+++.
T Consensus 9 GlAGleaA~~-LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 9 GLAGSEAAWQ-LAQAGVPVILYEMRPE 34 (433)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecccc
Confidence 6899999999 8999999999997654
No 450
>PRK08244 hypothetical protein; Provisional
Probab=92.51 E-value=0.087 Score=49.20 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=24.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+.+|+. ++++|++|+|+||.+.
T Consensus 11 GpaGl~lA~~-L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 11 GPVGLMLASE-LALAGVKTCVIERLKE 36 (493)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCC
Confidence 6999999999 8999999999999764
No 451
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.50 E-value=0.038 Score=52.72 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=31.5
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
.|.|||+|++ |+.+|..+++.|.+|+|+|+.+..||
T Consensus 11 DVvVVG~G~a-----Gl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 11 DVLVIGSGAG-----GLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CEEEECcCHH-----HHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 3445999999 99999999999999999999887654
No 452
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.50 E-value=0.081 Score=47.51 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=23.2
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+|+|+++|+. +++.|++|+|+|+.+
T Consensus 10 G~~Gl~~A~~-L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 10 GLSGMLTALS-FAQKGIKTTIFESKS 34 (374)
T ss_pred CHHHHHHHHH-HHcCCCeEEEecCCC
Confidence 6999999999 899999999999864
No 453
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=92.48 E-value=0.083 Score=50.31 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=26.0
Q ss_pred ccchhchHHHHHhhCCCeEEEeccC-CCCCc
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERN-DRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~-~~lGG 72 (276)
+|||++||+. ||+.|++|.|+|++ +.+|+
T Consensus 13 GpAG~eAA~~-aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 13 GHAGCEAALA-AARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred hHHHHHHHHH-HHHcCCcEEEEecccccccc
Confidence 6999999999 89999999999997 36765
No 454
>KOG1276|consensus
Probab=92.46 E-value=0.049 Score=48.99 Aligned_cols=42 Identities=26% Similarity=0.494 Sum_probs=34.9
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcE--EEEEcCCCccceeeee
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHS--VTVFERNDRVGGLLQY 157 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~--Vtvie~~~~~gg~~~~ 157 (276)
+.+++| +|+|-+ |+++|++|++++-+ |+++|..+++||.++.
T Consensus 11 ~~~vaV--vGGGiS-----GL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAV--VGGGIS-----GLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEE--ECCchh-----HHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 344444 999999 99999999998866 5679999999998875
No 455
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=92.39 E-value=0.041 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.+.|||+|++ |+.+|..+++.|.+|+|+|+.+.
T Consensus 6 DVvVVG~G~a-----Gl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 6 DVLVIGGGNA-----ALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CEEEECCCHH-----HHHHHHHHHHCCCeEEEEeCCCC
Confidence 3445999999 99999999999999999999873
No 456
>PTZ00367 squalene epoxidase; Provisional
Probab=92.38 E-value=0.038 Score=52.51 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=29.2
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
..+.|+|+|++ |+.+|..|++.|++|+|+|+.+
T Consensus 34 ~dViIVGaGia-----GlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIA-----GPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHH-----HHHHHHHHHhcCCEEEEEcccc
Confidence 34455999999 9999999999999999999875
No 457
>KOG1276|consensus
Probab=92.34 E-value=0.1 Score=46.99 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=27.6
Q ss_pred ccchhchHHHHHhhCCCeE--EEeccCCCCCceeee
Q psy12810 43 FTATLSYHISIQHLVGHSV--TVFERNDRVGGLLQY 76 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V--~l~Ek~~~lGG~~~~ 76 (276)
+.+||+||+. +++++-+| +|||+++++||-++-
T Consensus 20 GiSGL~aay~-L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 20 GISGLCAAYY-LARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred chhHHHHHHH-HHhcCCCceEEEEecCCcccceeee
Confidence 5789999999 78888776 459999999997644
No 458
>KOG2853|consensus
Probab=92.29 E-value=1.1 Score=39.43 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhchHHHH---HhhCCCeEEEeccCCC---------CCceee-ecCCCCCCCHHHHHHHHHHHHhC-CC----eEEeccc
Q psy12810 46 TLSYHISI---QHLVGHSVTVFERNDR---------VGGLLQ-YGIPTMKLSKEVVQRRVKLLAAE-GI----EFKTNIN 107 (276)
Q Consensus 46 Gl~aA~~~---aa~~G~~V~l~Ek~~~---------lGG~~~-~~~~~~~~~~~~~~~~~~~l~~~-gv----~~~~~~~ 107 (276)
|.+.|+-| +.+.|.+|.|+||++. .||.|. |.+|....-.-....+.....+. |+ ++-++-.
T Consensus 98 GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~~~d~~~vdl~f~ 177 (509)
T KOG2853|consen 98 GSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLGILDSEQVDLNFF 177 (509)
T ss_pred chhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhccccCCCCCcccC
Q ss_pred cCccchhhhccCCCCCCCCCCCCcchhhhh-------CCcEEEEEcCCC-------------ccceeeeecCCCCCCcHH
Q psy12810 108 VGKDIAAKVTNHTPQSDNQTKHCPPLIVNI-------VGHSVTVFERND-------------RVGGLLQYGIPTMKLSKE 167 (276)
Q Consensus 108 v~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~-------~G~~Vtvie~~~-------------~~gg~~~~~~~~~~~~~~ 167 (276)
-.--+.. + +-+-|+.|++ +|.+|-++.+.. .++ .+-..-...-.+..
T Consensus 178 P~GyL~L-------A-----~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa-~lG~e~EGwfdpw~ 244 (509)
T KOG2853|consen 178 PTGYLRL-------A-----SEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALA-SLGVEKEGWFDPWA 244 (509)
T ss_pred CCceEEE-------c-----chhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeee-ecccccccccCHHH
Q ss_pred HHHHHHHHHHhcCcEEEeeeeec------------------------------cccchhhhhcccCEEEEcCCCC
Q psy12810 168 VVQRRVKLLAAEGIEFKTNINVG------------------------------KDIAAKELYEEFDALLLCTGAT 212 (276)
Q Consensus 168 ~~~~~~~~l~~~gv~i~~~~~v~------------------------------~~~~~~~~~~~~D~vVlAtG~~ 212 (276)
++..+.+.....|+.|..+..+. .-.+.....++|+.+|+|+|.+
T Consensus 245 LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 245 LLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred HHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
No 459
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.23 E-value=0.043 Score=51.50 Aligned_cols=34 Identities=18% Similarity=-0.042 Sum_probs=29.8
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
..+.|||+|.. |+.+|..|++.|.+|+|+|+.+.
T Consensus 7 ~DVvIIGGGi~-----G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGIN-----GAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHH-----HHHHHHHHHHCCCeEEEEecCCC
Confidence 34445999999 99999999999999999999764
No 460
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.21 E-value=0.094 Score=47.25 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=23.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+|+|+++|+. +++.|++|+|+|+.+
T Consensus 14 G~aGl~~A~~-La~~G~~V~liE~~~ 38 (391)
T PRK08020 14 GMVGAALALG-LAQHGFSVAVLEHAA 38 (391)
T ss_pred CHHHHHHHHH-HhcCCCEEEEEcCCC
Confidence 6999999999 899999999999975
No 461
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=92.14 E-value=0.044 Score=52.89 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=30.0
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhC-CcEEEEEcCCCc
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIV-GHSVTVFERNDR 150 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~-G~~Vtvie~~~~ 150 (276)
++.|.|+|+||+ |+.+|..|++. |.+|+|||+.+.
T Consensus 32 ~~dVlIVGAGPa-----GL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPA-----GLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHH-----HHHHHHHHhcCCCCcEEEEEcCCC
Confidence 445556999999 99999999995 999999998763
No 462
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.14 E-value=0.11 Score=46.76 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+++|+. +++.|++|+|+||.+..
T Consensus 16 G~~Gl~~A~~-L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 16 GPAGLAAAIA-LARAGASVALVAPEPPY 42 (388)
T ss_pred CHHHHHHHHH-HhcCCCeEEEEeCCCCC
Confidence 6999999999 89999999999998644
No 463
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.03 E-value=0.043 Score=49.91 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
+.|||+|-. |+++|.+|++.|++|+|+|+...+
T Consensus 3 v~IVG~Gi~-----Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 3 VVVLGSGVI-----GVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEECCcHH-----HHHHHHHHHHCCCEEEEEeCCCch
Confidence 345999999 999999999999999999997643
No 464
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.99 E-value=0.047 Score=48.94 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=28.0
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|||+|-. |+++|..|++.|.+|+|+|+.+.
T Consensus 4 vIIGaGi~-----G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 4 IVVGAGIM-----GCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCeEEEEeccCC
Confidence 35999999 99999999999999999999754
No 465
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.86 E-value=0.052 Score=50.87 Aligned_cols=34 Identities=15% Similarity=-0.063 Sum_probs=30.0
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
+.+.|||+|.. |+.+|..|+++|.+|+|+|+.+.
T Consensus 7 ~DVvIIGGGi~-----G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 7 YDLFVIGGGIN-----GAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred cCEEEECCCHH-----HHHHHHHHHhCCCcEEEEECCCC
Confidence 34455999999 99999999999999999999864
No 466
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.85 E-value=0.048 Score=49.32 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=29.2
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhC--CcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIV--GHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~--G~~Vtvie~~~~~ 151 (276)
+.|||+|.. |+.+|..|+++ |.+|+|+|+.+.+
T Consensus 5 VvIIGgGi~-----G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 5 FVIIGGGIV-----GLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred EEEECCcHH-----HHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 345999999 99999999998 9999999998754
No 467
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.79 E-value=0.3 Score=45.12 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.1
Q ss_pred cccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 42 AFTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 42 ~~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
.+++||+||+. |+++||+|+++|+++.
T Consensus 8 ~G~sG~s~a~~-l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 8 LGRSGIAAARL-LKAQGWEVVVSDRNDS 34 (459)
T ss_pred cCHHHHHHHHH-HHHCCCEEEEECCCCc
Confidence 36899999999 8999999999998763
No 468
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=91.78 E-value=0.06 Score=50.74 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=32.3
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
.|+|+||+ |+.+|..|++.|.+|.+||++...|+.|
T Consensus 4 ~ivg~Gp~-----G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 4 FIAGSGPI-----GCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred EEECCchH-----HHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 35999999 9999999999999999999999887654
No 469
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.70 E-value=0.065 Score=48.19 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=26.6
Q ss_pred CCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 127 TKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 127 ~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
.|+.+|..|++.|++|+|+|+++++||..
T Consensus 2 aGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 2 AGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 38999999999999999999999999844
No 470
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=91.63 E-value=0.12 Score=47.03 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=22.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERN 67 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~ 67 (276)
+|+|+++|+. +++.|++|+|+|+.
T Consensus 13 G~~Gl~~A~~-L~~~G~~v~viE~~ 36 (405)
T PRK08850 13 GMVGLALAAA-LKESDLRIAVIEGQ 36 (405)
T ss_pred cHHHHHHHHH-HHhCCCEEEEEcCC
Confidence 6999999999 89999999999996
No 471
>PLN03000 amine oxidase
Probab=91.58 E-value=0.052 Score=53.67 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=33.6
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
+.|||+|++ |+.+|..|.+.|++|+|+|+.+++||.+
T Consensus 187 VvIIGaG~a-----GL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 187 VVIVGAGLS-----GLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred EEEECccHH-----HHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 445999999 9999999999999999999999998854
No 472
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=91.58 E-value=0.053 Score=49.86 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=26.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhh----CCcEEEEEcCC
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNI----VGHSVTVFERN 148 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~----~G~~Vtvie~~ 148 (276)
|.|+|+||+ |+.+|..|++ .|++|+|||+.
T Consensus 3 V~IVGaGp~-----Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 3 VVIVGGGPV-----GLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred EEEECCcHH-----HHHHHHHHhcCcccCCCeEEEEeCC
Confidence 345999999 9999999998 89999999983
No 473
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.57 E-value=0.11 Score=38.07 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=47.2
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccch
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 195 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~ 195 (276)
++|.+.. |...+..|.+.+.+|+++|..+. ..+.+.+.|+.++.+.....+.-.
T Consensus 3 I~G~g~~-----~~~i~~~L~~~~~~vvvid~d~~---------------------~~~~~~~~~~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 3 IIGYGRI-----GREIAEQLKEGGIDVVVIDRDPE---------------------RVEELREEGVEVIYGDATDPEVLE 56 (116)
T ss_dssp EES-SHH-----HHHHHHHHHHTTSEEEEEESSHH---------------------HHHHHHHTTSEEEES-TTSHHHHH
T ss_pred EEcCCHH-----HHHHHHHHHhCCCEEEEEECCcH---------------------HHHHHHhcccccccccchhhhHHh
Confidence 4788887 99999999997789999997663 234566778887776533221111
Q ss_pred hhhhcccCEEEEcCCCC
Q psy12810 196 KELYEEFDALLLCTGAT 212 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~ 212 (276)
+-....+|.+|++++..
T Consensus 57 ~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 57 RAGIEKADAVVILTDDD 73 (116)
T ss_dssp HTTGGCESEEEEESSSH
T ss_pred hcCccccCEEEEccCCH
Confidence 11234689999998853
No 474
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.54 E-value=0.43 Score=44.21 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=49.2
Q ss_pred hccCCCCCCCCCCCC-cchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccc
Q psy12810 116 VTNHTPQSDNQTKHC-PPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 194 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~-~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~ 194 (276)
++|.|.+ |++ +|..|.++|++|++.|..+.. . .+.+.+.|+.+..+..
T Consensus 12 viG~G~s-----G~s~~a~~L~~~G~~V~~~D~~~~~-------------------~-~~~l~~~gi~~~~~~~------ 60 (461)
T PRK00421 12 FVGIGGI-----GMSGLAEVLLNLGYKVSGSDLKESA-------------------V-TQRLLELGAIIFIGHD------ 60 (461)
T ss_pred EEEEchh-----hHHHHHHHHHhCCCeEEEECCCCCh-------------------H-HHHHHHCCCEEeCCCC------
Confidence 4899988 999 699999999999999975520 0 1225666888765321
Q ss_pred hhhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 195 AKELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 195 ~~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
.... ..+|.||++.|-. +..|.+
T Consensus 61 ~~~~-~~~d~vv~spgi~-~~~~~~ 83 (461)
T PRK00421 61 AENI-KDADVVVYSSAIP-DDNPEL 83 (461)
T ss_pred HHHC-CCCCEEEECCCCC-CCCHHH
Confidence 1111 2589999999986 655543
No 475
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=91.48 E-value=0.095 Score=46.05 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.8
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceee
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~ 155 (276)
..|.|||+|-+ |+++|..|++ -++||+||...++||--
T Consensus 9 ~~IAVIGsGis-----GLSAA~~Ls~-rhdVTLfEA~~rlGGha 46 (447)
T COG2907 9 RKIAVIGSGIS-----GLSAAWLLSR-RHDVTLFEADRRLGGHA 46 (447)
T ss_pred cceEEEcccch-----hhhhHHhhhc-ccceEEEeccccccCcc
Confidence 34455999999 9999999876 58999999999998744
No 476
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=91.38 E-value=0.14 Score=48.47 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.9
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|+|+++|+. |+++|++|+|+||.+.+
T Consensus 32 GpaGl~lA~~-L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 32 GPVGLALAID-LAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEeCCCCC
Confidence 6999999999 89999999999998755
No 477
>KOG3851|consensus
Probab=91.32 E-value=0.05 Score=47.17 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=25.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhh-CCc-EEEEEcCCCcc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNI-VGH-SVTVFERNDRV 151 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~-~G~-~Vtvie~~~~~ 151 (276)
.+.++|+|.+ |+.+|..+.+ .|. +|.|+|..+..
T Consensus 41 kvLVvGGGsg-----Gi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 41 KVLVVGGGSG-----GIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred EEEEEcCCcc-----hhHHHHHHHhhcCCCceEEecchhhc
Confidence 3445899999 9999887754 565 59999987753
No 478
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.32 E-value=0.059 Score=51.23 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=31.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
..+.|||+|++ |+.+|..+++.|.+|+|||+.+.+||
T Consensus 8 ~DvvVvG~G~a-----G~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 8 YDVVVVGSGAA-----GMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCEEEECcCHH-----HHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 34445999999 99999999999999999999886654
No 479
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=91.29 E-value=0.16 Score=40.87 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=24.6
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+||||.||.. +++.|++|+|+|+.+..+
T Consensus 8 G~aGl~aA~~-l~~~~~~v~ii~~~~~~~ 35 (201)
T PF07992_consen 8 GPAGLSAALE-LARPGAKVLIIEKSPGTP 35 (201)
T ss_dssp SHHHHHHHHH-HHHTTSEEEEESSSSHHH
T ss_pred HHHHHHHHHH-HhcCCCeEEEEecccccc
Confidence 6999999999 899999999999976443
No 480
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.26 E-value=0.14 Score=46.37 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCcEEEeeeeeccc--------cc-hhhhhcccCEEEEcCCCC
Q psy12810 166 KEVVQRRVKLLAAEGIEFKTNINVGKD--------IA-AKELYEEFDALLLCTGAT 212 (276)
Q Consensus 166 ~~~~~~~~~~l~~~gv~i~~~~~v~~~--------~~-~~~~~~~~D~vVlAtG~~ 212 (276)
..+...+.+.+.+.|+++++++.++.- +. .+..++.+|.||.|.|.+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 455566677777789999988876410 11 122357899999999986
No 481
>PRK06185 hypothetical protein; Provisional
Probab=91.25 E-value=0.14 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.8
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|+|+++|+. +++.|++|+|+|+++.
T Consensus 15 G~~Gl~~A~~-La~~G~~v~liE~~~~ 40 (407)
T PRK06185 15 GPAGMMLGLL-LARAGVDVTVLEKHAD 40 (407)
T ss_pred CHHHHHHHHH-HHhCCCcEEEEecCCc
Confidence 6999999999 8999999999999753
No 482
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=91.15 E-value=0.096 Score=46.54 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=22.2
Q ss_pred hccCCCCCCCCCCCCcchhhhhCC--cEEEEEcCCCcc
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVG--HSVTVFERNDRV 151 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G--~~Vtvie~~~~~ 151 (276)
|||+|.+ +.+.+..|.+.+ .+|+.+-+++..
T Consensus 195 VVGgGQS-----AAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 195 VVGGGQS-----AAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EE-SSHH-----HHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred EECCcHh-----HHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 4888887 778778877766 489999988754
No 483
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.10 E-value=0.069 Score=47.66 Aligned_cols=31 Identities=26% Similarity=0.198 Sum_probs=28.0
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.|||+|.. |+++|..|++.|++|+|+|+...
T Consensus 4 ~IIG~Gi~-----G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 4 IIVGAGIL-----GLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred EEECCCHH-----HHHHHHHHHHCCCeEEEEeCCCC
Confidence 34999999 99999999999999999998764
No 484
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.08 E-value=0.067 Score=50.75 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.2
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC--ccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND--RVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~--~~gg 153 (276)
.|.|||+|.+ |+.+|..+++.|.+|+|+|+.+ ..||
T Consensus 6 DVvVVG~G~A-----Gl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 6 DVIVVGAGLA-----GLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred CEEEECcCHH-----HHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 3445999999 9999999999999999999988 5555
No 485
>PLN02463 lycopene beta cyclase
Probab=91.02 E-value=0.17 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=23.7
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDR 69 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~ 69 (276)
+|||+++|.. +++.|++|+|+|+++.
T Consensus 37 GpAGLalA~~-La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 37 GPAGLAVAQQ-VSEAGLSVCCIDPSPL 62 (447)
T ss_pred CHHHHHHHHH-HHHCCCeEEEeccCcc
Confidence 6999999999 8999999999999653
No 486
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.02 E-value=0.14 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=23.3
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERND 68 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~ 68 (276)
+||||++|+. |+++|++|+||||.+
T Consensus 90 GIaGLalAla-L~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 90 GIGGLVFALA-AKKKGFDVLVFEKDL 114 (668)
T ss_pred CHHHHHHHHH-HHhcCCeEEEEeccc
Confidence 5999999999 899999999999964
No 487
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.00 E-value=0.07 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=28.9
Q ss_pred hhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCcc
Q psy12810 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151 (276)
Q Consensus 114 v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~ 151 (276)
+.|||+|-. |+++|.+|++.|.+|+++|+....
T Consensus 7 vvVIGgGi~-----Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 7 VVIIGGGIV-----GLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred EEEECCcHH-----HHHHHHHHHHcCCEEEEEecCccC
Confidence 345999999 999999999999999999987743
No 488
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.94 E-value=0.14 Score=46.08 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=22.3
Q ss_pred ccchhchHHHHHhhC---CCeEEEeccC
Q psy12810 43 FTATLSYHISIQHLV---GHSVTVFERN 67 (276)
Q Consensus 43 ~paGl~aA~~~aa~~---G~~V~l~Ek~ 67 (276)
+|||+++|+. |++. |++|+||||.
T Consensus 12 G~aGl~~A~~-L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 12 GMAGATLALA-LSRLSHGGLPVALIEAF 38 (395)
T ss_pred CHHHHHHHHH-hhhcccCCCEEEEEeCC
Confidence 6999999999 7887 9999999995
No 489
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.79 E-value=0.073 Score=50.88 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=31.7
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
.+.|||+|.+ |+.+|..+++.|.+|+|+|+.+..||
T Consensus 13 DVvVVG~G~A-----Gl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 13 DVLVVGSGGG-----GMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CEEEECccHH-----HHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 3445999999 99999999999999999999987655
No 490
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=90.76 E-value=0.08 Score=50.19 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=29.2
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
.+.|||+|.. |+.+|..|+++|.+|+|+|+.+.
T Consensus 8 DVvIIGGGi~-----G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 8 DVIIIGGGAT-----GAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cEEEECcCHH-----HHHHHHHHHHcCCeEEEEECCCC
Confidence 3445999999 99999999999999999999763
No 491
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.64 E-value=0.074 Score=50.53 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.4
Q ss_pred hhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 113 AAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 113 ~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
.+.|||+|.+ |+.+|..+++.|.+|+|||+.+..||
T Consensus 8 DvvIiG~G~a-----Gl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 8 DVVVVGSGGG-----GMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CEEEECcCHH-----HHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3445999999 99999999999999999999876654
No 492
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.58 E-value=0.093 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.1
Q ss_pred cchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccce
Q psy12810 111 DIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153 (276)
Q Consensus 111 ~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg 153 (276)
+..+.|||+| + |+.+|...++.|.+|+|+|+.+.+||
T Consensus 16 e~DvvvvG~G-~-----G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 16 TVDLLVVGSG-T-----GMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred eeCEEEECCc-H-----HHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 4455569999 8 99999999999999999999987766
No 493
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=90.55 E-value=0.093 Score=50.60 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=29.7
Q ss_pred chhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCc
Q psy12810 112 IAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDR 150 (276)
Q Consensus 112 v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~ 150 (276)
+.+.|||+|.. |+.+|..|++.|.+|+|+|+.+.
T Consensus 72 ~DVvVIGGGi~-----Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 72 LDVLVVGGGAT-----GAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred cCEEEECCCHH-----HHHHHHHHHhCCCEEEEEecccc
Confidence 34445999999 99999999999999999999863
No 494
>PLN02976 amine oxidase
Probab=90.53 E-value=0.08 Score=54.86 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=33.8
Q ss_pred hhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeee
Q psy12810 115 KVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQ 156 (276)
Q Consensus 115 ~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~ 156 (276)
.|||+|++ |+.+|..|.+.|++|+|+|+.+.+||.+.
T Consensus 697 ~IIGAG~A-----GLaAA~~L~~~G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 697 IVVGAGPA-----GLTAARHLQRQGFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred EEECchHH-----HHHHHHHHHHCCCcEEEEeeccCCCCcee
Confidence 35999999 99999999999999999999999998764
No 495
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=90.35 E-value=0.2 Score=47.34 Aligned_cols=28 Identities=21% Similarity=0.020 Sum_probs=25.4
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRVG 71 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~lG 71 (276)
+|+|+.+|.. ++++|++|+|+||.+.+.
T Consensus 19 Gp~Gl~lA~~-L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 19 GPVGLTLANL-LGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CHHHHHHHHH-HHHCCCcEEEEecCCCCC
Confidence 7999999999 899999999999987654
No 496
>PRK11445 putative oxidoreductase; Provisional
Probab=90.33 E-value=0.19 Score=44.76 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=23.5
Q ss_pred ccchhchHHHHHhhCCCeEEEeccCCCC
Q psy12810 43 FTATLSYHISIQHLVGHSVTVFERNDRV 70 (276)
Q Consensus 43 ~paGl~aA~~~aa~~G~~V~l~Ek~~~l 70 (276)
+|||+++|+. +++. ++|+|+||.+.+
T Consensus 10 GpaGl~~A~~-La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 10 GPAGSALARL-LAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CHHHHHHHHH-Hhcc-CCEEEEECCCcc
Confidence 6999999999 7888 999999998754
No 497
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=90.31 E-value=0.22 Score=44.80 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=26.2
Q ss_pred ccchhchHHHHHhhC--CCeEEEeccCCCCCc
Q psy12810 43 FTATLSYHISIQHLV--GHSVTVFERNDRVGG 72 (276)
Q Consensus 43 ~paGl~aA~~~aa~~--G~~V~l~Ek~~~lGG 72 (276)
+|||+++|.. +++. |++|.|+|+.+.+||
T Consensus 8 G~AGl~lA~~-L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 8 GLAGGLIALR-LQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred cHHHHHHHHH-HHhcCCCCeEEEEeCCCCCCC
Confidence 6999999999 7776 999999999988887
No 498
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.22 E-value=0.37 Score=39.55 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=28.5
Q ss_pred CccchhhhccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCC
Q psy12810 109 GKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERND 149 (276)
Q Consensus 109 ~~~v~v~iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~ 149 (276)
++.+.+ +|+|.. |..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlV--vGgG~v-----a~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLV--VGGGDV-----ALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEE--ECcCHH-----HHHHHHHHHHCCCEEEEEcCCC
Confidence 455555 999999 9999999999999999998654
No 499
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=90.16 E-value=0.22 Score=46.99 Aligned_cols=32 Identities=16% Similarity=-0.063 Sum_probs=28.6
Q ss_pred cccchhchHHHHHhhCCCeEEEeccCCCCCcee
Q psy12810 42 AFTATLSYHISIQHLVGHSVTVFERNDRVGGLL 74 (276)
Q Consensus 42 ~~paGl~aA~~~aa~~G~~V~l~Ek~~~lGG~~ 74 (276)
-+|+|+.+|.. +++.|++|.++|++...||.+
T Consensus 8 ~Gp~G~~~a~~-l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 8 SGPIGCTYARL-CVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CchHHHHHHHH-HHHCCCeEEEEeccCccCCCc
Confidence 37999999999 899999999999998888644
No 500
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.14 E-value=0.41 Score=44.33 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=51.8
Q ss_pred hccCCCCCCCCCCCCcchhhhhCCcEEEEEcCCCccceeeeecCCCCCCcHHHHHHHHHHHHhcCcEEEeeeeeccccch
Q psy12810 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 195 (276)
Q Consensus 116 iiG~gp~~~g~~Gl~~A~~l~~~G~~Vtvie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~~~~~ 195 (276)
++|.|.+ |+.+|..|.+.|++|++.|..+.. ... ...+.+.+.|+.+..+...
T Consensus 19 v~G~G~s-----G~a~a~~L~~~G~~V~~~D~~~~~------------~~~----~~~~~l~~~gi~~~~~~~~------ 71 (458)
T PRK01710 19 VVGIGVS-----NIPLIKFLVKLGAKVTAFDKKSEE------------ELG----EVSNELKELGVKLVLGENY------ 71 (458)
T ss_pred EEcccHH-----HHHHHHHHHHCCCEEEEECCCCCc------------cch----HHHHHHHhCCCEEEeCCCC------
Confidence 3899999 999999999999999999976531 001 1123356778888765321
Q ss_pred hhhhcccCEEEEcCCCCCCCCCCC
Q psy12810 196 KELYEEFDALLLCTGATWPRDLPI 219 (276)
Q Consensus 196 ~~~~~~~D~vVlAtG~~~p~~~~i 219 (276)
.+....+|.||++.|-. +..|.+
T Consensus 72 ~~~~~~~dlVV~Spgi~-~~~p~~ 94 (458)
T PRK01710 72 LDKLDGFDVIFKTPSMR-IDSPEL 94 (458)
T ss_pred hHHhccCCEEEECCCCC-CCchHH
Confidence 11123589999998876 655543
Done!