RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12810
(276 letters)
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 251 bits (643), Expect = 6e-81
Identities = 85/138 (61%), Positives = 107/138 (77%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
GH VTVFER DR+GGLL+YGIP KL KEV+ RR++L+ AEGIEF+TN+ VGKDI A+EL
Sbjct: 166 GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEEL 225
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
E+DA+ L TGA PRDL IPGR L G++FAM FL ++ +G+E ISAK K+V+
Sbjct: 226 LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVV 285
Query: 259 VIGGGDTGCDCIATSLRQ 276
VIGGGDTG DC+ T++RQ
Sbjct: 286 VIGGGDTGMDCVGTAIRQ 303
Score = 115 bits (291), Expect = 2e-29
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114
GH VTVFER DR+GGLL+YGIP KL KEV+ RR++L+ AEGIEF+TN+ VGKDI A
Sbjct: 166 GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITA 222
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 213 bits (544), Expect = 3e-66
Identities = 87/144 (60%), Positives = 107/144 (74%), Gaps = 2/144 (1%)
Query: 135 VNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 194
+N GH+VTVFER DR GGLL YGIP MKL K +V RR+ LL+AEGI+F TN +G DI+
Sbjct: 162 LNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDIS 221
Query: 195 AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNE--NVSPISA 252
A EL E+FDA++L GAT PRDLPIPGR+L GI++AM FL S K +G + ++ I A
Sbjct: 222 ADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKA 281
Query: 253 KDKNVIVIGGGDTGCDCIATSLRQ 276
K K V+VIGGGDTG DC+ TSLR
Sbjct: 282 KGKKVVVIGGGDTGADCVGTSLRH 305
Score = 102 bits (255), Expect = 1e-24
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114
GH+VTVFER DR GGLL YGIP MKL K +V RR+ LL+AEGI+F TN +G DI+A
Sbjct: 166 GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA 222
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 187 bits (478), Expect = 1e-56
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 138 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKE 197
GH VTVFER GGLL YGIP KL K+++ RR++LL G+EFK N+ VG+DI +E
Sbjct: 145 AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEE 204
Query: 198 LYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNEN-VSPISAKDKN 256
L +E+DA+ L TGA PR L IPG G+ FA+ FL K+ +G+ AK K
Sbjct: 205 LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKR 264
Query: 257 VIVIGGGDTGCDCIATSLRQ 276
V+VIGGGDT DC T+LR
Sbjct: 265 VVVIGGGDTAMDCAGTALRL 284
Score = 89.7 bits (223), Expect = 2e-20
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 57 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 115
GH VTVFER GGLL YGIP KL K+++ RR++LL G+EFK N+ VG+DI +
Sbjct: 145 AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 165 bits (421), Expect = 4e-48
Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G+ VT+FE D+ GGLL+YGIP +L K++V R V+ L G+E +TN VG+DI EL
Sbjct: 163 GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDEL 222
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
+DA+ + TGA PR L IPG L G+Y A+ FL + Q + P+ K V+
Sbjct: 223 RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLT--RVNQAVADYDLPVG---KRVV 277
Query: 259 VIGGGDTGCDCIATSLRQ 276
VIGGG+T D T+ R
Sbjct: 278 VIGGGNTAMDAARTAKRL 295
Score = 92.2 bits (230), Expect = 3e-21
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
G+ VT+FE D+ GGLL+YGIP +L K++V R V+ L G+E +TN VG+DI
Sbjct: 163 GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDI 217
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 131 bits (332), Expect = 2e-35
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 134 IVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 193
I+ G V VF+R+ +GGLL +GIP+ KL K V+ RR ++ A GIEF N VG+DI
Sbjct: 159 ILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218
Query: 194 AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGN---ENVSPI 250
+ +L E++DA+ L G +PG G+ A+ FL + ++ MG I
Sbjct: 219 SLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLI 278
Query: 251 SAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ K V+V+GGGDT DC+ T++R
Sbjct: 279 DVEGKRVVVLGGGDTAMDCVRTAIRL 304
Score = 71.8 bits (176), Expect = 3e-14
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
G V VF+R+ +GGLL +GIP+ KL K V+ RR ++ A GIEF N VG+DI
Sbjct: 164 GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 120 bits (303), Expect = 7e-31
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G +VTV++R+ +GGLL +GIP KL K ++ RR ++ +A GIEF+ N VGKDI+ + L
Sbjct: 350 GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESL 409
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMG---NENVSPISAKDK 255
E++DA+ + G +P G+Y A+ FL + K+ MG I+
Sbjct: 410 LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGL 469
Query: 256 NVIVIGGGDTGCDCIATSLRQ 276
NV+V+GGGDT DC+ T+LR
Sbjct: 470 NVVVLGGGDTAMDCVRTALRH 490
Score = 65.9 bits (161), Expect = 3e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
G +VTV++R+ +GGLL +GIP KL K ++ RR ++ +A GIEF+ N VGKDI
Sbjct: 350 GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 115 bits (291), Expect = 3e-29
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 8/137 (5%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
GH+VT+FE ++GG+++YGIP +L +EV+ ++ + G+E + + VG+DI ++L
Sbjct: 160 GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQL 219
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
EFDA+ + GA + LPIPG +G+ A+ FL + +G + K V+
Sbjct: 220 EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFL-----RAVGEGEPPFL---GKRVV 271
Query: 259 VIGGGDTGCDCIATSLR 275
VIGGG+T D T+ R
Sbjct: 272 VIGGGNTAMDAARTARR 288
Score = 64.9 bits (159), Expect = 8e-12
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 49 YHISIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
YH+ +GH+VT+FE ++GG+++YGIP +L +EV+ ++ + G+E + + V
Sbjct: 154 YHLR---RMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210
Query: 109 GKDIAA 114
G+DI
Sbjct: 211 GEDITL 216
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 111 bits (280), Expect = 3e-28
Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
GHSVTVFE + GG++ YGIP +L KE+V +K L G+ F+ N VGK +EL
Sbjct: 156 GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEEL 215
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLE--SWQKKQMGNENVSPISAKDKN 256
+ ++DA+ + TGA P+ + IPG +L G+Y A FL + K +P+ A K+
Sbjct: 216 FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG-KS 274
Query: 257 VIVIGGGDTGCDCIATSLR 275
V+VIGGG+T D T+LR
Sbjct: 275 VVVIGGGNTAVDSARTALR 293
Score = 58.0 bits (140), Expect = 1e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
GHSVTVFE + GG++ YGIP +L KE+V +K L G+ F+ N VGK
Sbjct: 156 GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTA 210
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 105 bits (264), Expect = 1e-25
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
GH VT+F+ N++ GG+++YGIP +L + V+ + L A G EF+ N G+DI +EL
Sbjct: 216 GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLEEL 275
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
+EFDA+LL GA + IPG +L G+ + FL + + P K V+
Sbjct: 276 QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL----RNVALGTALHP----GKKVV 327
Query: 259 VIGGGDTGCDCIATSLR 275
VIGGG+T D T+LR
Sbjct: 328 VIGGGNTAIDAARTALR 344
Score = 59.4 bits (144), Expect = 5e-10
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
GH VT+F+ N++ GG+++YGIP +L + V+ + L A G EF+ N G+DI
Sbjct: 216 GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 105 bits (262), Expect = 2e-25
Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G V VF+R+ +GG+L +GIP KL K V+ +R ++ A GI+F N +G+DI +L
Sbjct: 333 GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDL 392
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVS--PISA-KDK 255
E+DA+ + G +P G+ A+ FL + ++ MG P++ + K
Sbjct: 393 TSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGK 452
Query: 256 NVIVIGGGDTGCDCIATSLR 275
V+V+GGGDT DC+ TS+R
Sbjct: 453 RVVVLGGGDTTMDCLRTSIR 472
Score = 56.2 bits (135), Expect = 6e-09
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
G V VF+R+ +GG+L +GIP KL K V+ +R ++ A GI+F N +G+DI
Sbjct: 333 GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 102 bits (257), Expect = 6e-25
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKE-VVQRRVKLLAAEGIEFKTNINVGKDIAAKE 197
G+ VT+FE GG+L YGIP +L KE VV++ ++ + G++ +TN+ VGK + E
Sbjct: 163 GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDE 222
Query: 198 LYEE--FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFL-ESWQKKQMGNENVSPISAKD 254
L EE FDA+ + +GA P+ + IPG L+G++ A FL K E +PI
Sbjct: 223 LLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPI-KVG 281
Query: 255 KNVIVIGGGDTGCDCIATSLR 275
K V V+GGG+ D T+LR
Sbjct: 282 KKVAVVGGGNVAMDAARTALR 302
Score = 51.9 bits (125), Expect = 1e-07
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKE-VVQRRVKLLAAEGIEFKTNINVGKDI 112
G+ VT+FE GG+L YGIP +L KE VV++ ++ + G++ +TN+ VGK +
Sbjct: 163 GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTV 218
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 99.8 bits (249), Expect = 1e-23
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G+ VTVFE +GG+L+YGIP +L K++V ++ L G++F+T++ VGK I +EL
Sbjct: 454 GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEEL 513
Query: 199 YEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENV-SPISAKDKN 256
EE F + + +GA P + IPG +G+ + +L + + +PI K
Sbjct: 514 EEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKF-GKK 572
Query: 257 VIVIGGGDTGCDCIATSLR 275
V V+GGG+T D T+ R
Sbjct: 573 VAVVGGGNTAMDSARTAKR 591
Score = 56.7 bits (137), Expect = 4e-09
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
G+ VTVFE +GG+L+YGIP +L K++V ++ L G++F+T++ VGK I
Sbjct: 454 GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTI 508
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 95.8 bits (239), Expect = 3e-22
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 138 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKE 197
GH VTVFER + GG+++ IP ++ E++Q ++ + A G++F+ + + +
Sbjct: 561 AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTV-EQL 619
Query: 198 LYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNV 257
E +D +++ GA L + G + A+ FLE ++ K + K+V
Sbjct: 620 KNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNK---GTAL----KLGKHV 671
Query: 258 IVIGGGDTGCDCIATSLR 275
+V+GGG+T D +LR
Sbjct: 672 VVVGGGNTAMDAARAALR 689
Score = 56.9 bits (138), Expect = 4e-09
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 57 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114
GH VTVFER + GG+++ IP ++ E++Q ++ + A G++F+ + +
Sbjct: 561 AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQ 618
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 93.1 bits (232), Expect = 7e-22
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 22/149 (14%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV--------- 189
G+ V V+++ GGL+ +GIP ++ E V+ VK L G+ F T V
Sbjct: 41 GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEPLHEE 100
Query: 190 ------GKDIAAKELYEEFDALLLCTGATW-PRDLPIPGRQLSGIYFAMSFL---ESWQK 239
+ ++ +EL +++DA+L+ TG TW R L IPG L G+Y A+ +L + +
Sbjct: 101 EGDEFVERIVSLEELVKKYDAVLIATG-TWKSRKLGIPGEDLPGVYSALEYLFRIRAAKL 159
Query: 240 KQMGNENVSPISAKDKNVIVIGGGDTGCD 268
+ E V P+ K V+V+G G T D
Sbjct: 160 GYLPWEKVPPVEGKK--VVVVGAGLTAVD 186
Score = 44.2 bits (105), Expect = 3e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G+ V V+++ GGL+ +GIP ++ E V+ VK L G+ F T V
Sbjct: 41 GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKV 91
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 92.7 bits (230), Expect = 3e-21
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G VTV+E VGG+LQYGIP+ +L ++++ R V+ L G++ +TN +GK +L
Sbjct: 453 GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQL 512
Query: 199 YEE--FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENV----SPISA 252
+ FDA+ L GA P L IPG +Y A FL + MG + +PIS
Sbjct: 513 MNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLT--RVNLMGGDKFPFLDTPISL 570
Query: 253 KDKNVIVIGGGDTGCDCIATSLR 275
K+V+VIG G+T DC+ + R
Sbjct: 571 -GKSVVVIGAGNTAMDCLRVAKR 592
Score = 55.3 bits (133), Expect = 1e-08
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G VTV+E VGG+LQYGIP+ +L ++++ R V+ L G++ +TN +GK
Sbjct: 453 GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 90.6 bits (225), Expect = 2e-20
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G+ VTV+E + GG+++YGIP+ +L E + + + + A G++ N VGKDI +EL
Sbjct: 306 GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEEL 365
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
E+ DA+ L TG T R IPG + A+ L + G I ++++
Sbjct: 366 REKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIP---RSLV 422
Query: 259 VIGGGDTGCDCIATSL 274
VIGGG+ D IA S+
Sbjct: 423 VIGGGNVAMD-IARSM 437
Score = 56.7 bits (137), Expect = 4e-09
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 56 LVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 113
+G+ VTV+E + GG+++YGIP+ +L E + + + + A G++ N VGKDI
Sbjct: 304 TMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIP 361
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 77.5 bits (191), Expect = 5e-16
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
GH VTVFE+ ++ GG+++ IP ++S E +Q+ ++L+ G+EFK + +A +
Sbjct: 560 GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAELK- 618
Query: 199 YEEFDALLLCTGATWPRDLPIPG---RQLSGIYFAMSFLESWQKKQMGNENVSPISAKDK 255
+ + ++L GA L + G R L + F +F E +G K
Sbjct: 619 NQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLG-----------K 667
Query: 256 NVIVIGGGDTGCDCIATSLR 275
+V+V+GGG+T D +LR
Sbjct: 668 HVVVVGGGNTAMDAARAALR 687
Score = 54.0 bits (130), Expect = 3e-08
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114
GH VTVFE+ ++ GG+++ IP ++S E +Q+ ++L+ G+EFK + +A
Sbjct: 560 GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAE 616
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 77.2 bits (190), Expect = 6e-16
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G VTVFE +GG+L+YGIP +L +++ V+ + G F N VGK ++L
Sbjct: 329 GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLEDL 388
Query: 199 YEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQ-MGNENVSPI-SAKDK 255
F + + TGA P + +PG L G+ A FL + + ++ +P+ K K
Sbjct: 389 KAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGK 448
Query: 256 NVIVIGGGDTGCDCIATSLR 275
V VIGGG+T D T+ R
Sbjct: 449 EVFVIGGGNTAMDAARTAKR 468
Score = 45.2 bits (107), Expect = 2e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G VTVFE +GG+L+YGIP +L +++ V+ + G F N VGK
Sbjct: 329 GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK 381
>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 62.8 bits (153), Expect = 3e-11
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 116 VTNHTPQSDNQTKHCPPLIVNIVGHS------------------VTVFERNDRVGGLLQY 157
++ S++ + PL V +VG V + ER GL++
Sbjct: 10 LSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69
Query: 158 GI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRD 216
G+ P +K V + ++ + + F N+ +G+D++ EL + + ++L GA R
Sbjct: 70 GVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAYGAESDRR 129
Query: 217 LPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
L IPG L G+ A F+ W ++ P +V+G G+ DC
Sbjct: 130 LGIPGEDLPGVLSAREFV-WWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDC 181
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 51.2 bits (123), Expect = 1e-07
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 38/159 (23%)
Query: 139 GHSVTVFERNDR----VGGLLQYG----------IPTMKLSKEVVQRR-VKLL---AAEG 180
G V + ER G L + + L +EV + V++L
Sbjct: 22 GLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLALPEEVYKEFGVEVLLGTEVVD 81
Query: 181 IEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQ---LSGIYFAMSFLESW 237
I+ V KD+ +D L++ TGA PR IPG + L G+ + LE
Sbjct: 82 IDRGEKTVVLKDVETGREIT-YDKLIIATGA-RPRIPGIPGVEVATLRGVIDSDEILELL 139
Query: 238 QKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ K V+V+GGG G + A +L +
Sbjct: 140 ELP--------------KRVVVVGGGYIGLEL-AAALAK 163
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 48.8 bits (116), Expect = 1e-06
Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 21/144 (14%)
Query: 142 VTVFERND---RVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-DIAAKE 197
+T+ R L + S E ++ + A GI+ +T V D K
Sbjct: 26 ITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSIDPENKV 85
Query: 198 LY-----EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA 252
+ E+D L+L TGA PR P P G+ L + + P
Sbjct: 86 VLLDDGEIEYDYLVLATGA-RPR--PPPISDWEGVV----TLRLREDAEALKGGAEPP-- 136
Query: 253 KDKNVIVIGGGDTGCDCIATSLRQ 276
K+V+V+G G G + A + +
Sbjct: 137 --KDVVVVGAGPIGLE-AAEAAAK 157
Score = 43.4 bits (102), Expect = 7e-05
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV-GKDIAAKE 197
G VT+ E DR+GG L L EV + +LL G+E V G +
Sbjct: 159 GKKVTLIEAADRLGGQL--------LDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNT 210
Query: 198 LYEEFDALLLCTGATWPRDLPIPG 221
L E + DL I G
Sbjct: 211 LVVERVVGIDGEEI--KADLVIIG 232
Score = 40.7 bits (95), Expect = 5e-04
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV-GKDIAAKV 116
G VT+ E DR+GG L L EV + +LL G+E V G +
Sbjct: 159 GKKVTLIEAADRLGGQL--------LDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNT 210
Query: 117 TNHTP-QSDNQTKHCPPLIVNIVGHS-VTVFERNDRVG 152
+ + L++ G V + G
Sbjct: 211 LVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPG 248
>gnl|CDD|238482 cd00982, gltB_C, gltb_C. This domain is found at the C-terminus
of the large subunit (gltB) of glutamate synthase
(GltS). GltS encodes a complex iron-sulfur
flavoprotein that catalyzes the synthesis of
L-glutamate from L-glutamine and 2-oxoglutarate. It
requires the transfer of ammonia and electrons among
three distinct active centers that carry out L-Gln
hydrolysis, conversion of 2-oxoglutarate into L-Glu,
and electron uptake from a donor. These catalytic sites
appear to occur in other domains within the protein,
and not the domain in this CD. This particular domain
has no known function, but it likely has a structural
role as it interacts with the amidotransferase and
FMN-binding domains of gltS.
Length = 251
Score = 43.7 bits (104), Expect = 4e-05
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 11 LDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHIS 52
LD+ LI + EP L + LEY I N RA LS I+
Sbjct: 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIA 42
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 180 GIEFKTNINVGKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ 238
++ K K++ ++ + +D L++ TGA P PI L +Y S +
Sbjct: 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPIKNINLENVYTLKSMEDGLA 139
Query: 239 -KKQMGNENVSPISAKDKNVIVIGGG 263
K+ + +E + KN+++IG G
Sbjct: 140 LKELLKDEEI-------KNIVIIGAG 158
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport
and metabolism].
Length = 301
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 4 DHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQH 55
DH LE LD L+++ + +G+ + + I N R+ A LS I+ +
Sbjct: 24 DHGLEPVLDAKLLEDKPALENGE--IVKILAEIRNVDRSVGANLSGEIAKGY 73
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 38.6 bits (91), Expect = 0.003
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 22/81 (27%)
Query: 142 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK---------- 191
VTVFER DR+ L EV ++ K+L+ E + K V
Sbjct: 195 VTVFERGDRILPL---------EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVE 244
Query: 192 --DIAAKELYEEFDALLLCTG 210
+ K E D +L+ TG
Sbjct: 245 ELEKGGKTETIEADYVLVATG 265
Score = 30.5 bits (70), Expect = 1.00
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 61 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
VTVFER DR+ L EV ++ K+L+ E + K V
Sbjct: 195 VTVFERGDRILPL---------EDPEVSKQAQKILSKE-FKIKLGAKV 232
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 37.7 bits (88), Expect = 0.006
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 139 GHSVTVFERNDRVGG--LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
GH VT+FER DR+GG L +P ++++ L G+E + G + A+
Sbjct: 402 GHRVTLFEREDRLGGQVRLAARLPGRGEFADLIRNLASELRRAGVEVRL----GVEADAE 457
Query: 197 ELYEEF-DALLLCTGATWPRDLPIPGR 222
+ E DA+++ TG+ P P G
Sbjct: 458 LVLAEKPDAVVVATGSR-PVRPPWAGA 483
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 58 GHSVTVFERNDRVGG 72
GH VT+FER DR+GG
Sbjct: 402 GHRVTLFEREDRLGG 416
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins, cyclohexanone
mono-oxygenase and a number of different
mono-oxygenases.
Length = 532
Score = 37.1 bits (86), Expect = 0.008
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 202 FDALLLCTG-ATWPRDLPIPGRQLSGI-YFAMSFLESWQKKQMGNENVSPISAKDKNVIV 259
FDA+++CTG T P +P GI F + S K P + K V+V
Sbjct: 139 FDAVMVCTGHHTNPH---LPLESFPGINKFKGQYFHSRDYKH-------PEGFQGKRVLV 188
Query: 260 IGGGDTGCDCIATSL 274
IG G++G D IA L
Sbjct: 189 IGLGNSGGD-IAVEL 202
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 36.3 bits (84), Expect = 0.014
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 161 TMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEE-FDALLLCTGATWPRDLPI 219
+K + EV++ + + V ++ E YEE +D L+L GA+ P I
Sbjct: 60 DVKTNHEVIE----------VNDERQTVVVRNNKTNETYEESYDYLILSPGAS-PIVPNI 108
Query: 220 PGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGG 263
G L ++ + ++ KQ ++N K +NV++IGGG
Sbjct: 109 EGINLDIVFTLRNLEDTDAIKQYIDKN------KVENVVIIGGG 146
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 36.4 bits (85), Expect = 0.014
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA--- 195
G VTV ER DR+ +P E+ + K L G++ N V
Sbjct: 196 GSKVTVVERGDRI-------LPGE--DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG 246
Query: 196 --------KELYEEFDALLLCTG 210
+ E DA+L+ G
Sbjct: 247 VLVTLEDGEGGTIEADAVLVAIG 269
Score = 32.6 bits (75), Expect = 0.19
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G VTV ER DR+ +P E+ + K L G++ N V
Sbjct: 196 GSKVTVVERGDRI-------LPGE--DPEISKELTKQLEKGGVKILLNTKVTA 239
>gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
Length = 506
Score = 36.4 bits (84), Expect = 0.015
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 142 VTVFERNDRVGGLLQYGIPTMKLS-KEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYE 200
V +FE+ GL++YG+ + K + + + F N++VG D+ +EL
Sbjct: 66 VDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRN 125
Query: 201 EFDALLLCTGAT 212
++ ++ C GA+
Sbjct: 126 HYNCVIFCCGAS 137
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 35.6 bits (83), Expect = 0.019
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 58 GHSVTVFERNDRVGGLL 74
GH VTVFE +D++GGL
Sbjct: 22 GHEVTVFEADDQLGGLA 38
Score = 35.6 bits (83), Expect = 0.019
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 139 GHSVTVFERNDRVGGLL 155
GH VTVFE +D++GGL
Sbjct: 22 GHEVTVFEADDQLGGLA 38
>gnl|CDD|235832 PRK06567, PRK06567, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase; Validated.
Length = 1028
Score = 36.0 bits (83), Expect = 0.021
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 152 GGLLQYGIPTMKLSKEVVQ-RRVKLLAAEGIEFKTNINVGKDIAAKELYE-EFDALLLCT 209
GG+ +YGI T++ K + R+ L ++ + + +I ++ ++ FD + C
Sbjct: 447 GGVAEYGI-TVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCI 505
Query: 210 GATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
GA P+ L I + G+ A FL + Q +N + + VIGGG T D
Sbjct: 506 GAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDA 565
Query: 270 IATSL 274
SL
Sbjct: 566 ATESL 570
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 35.5 bits (82), Expect = 0.025
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 58 GHSVTVFERNDRVGG 72
G VTV E+NDRVGG
Sbjct: 26 GLKVTVLEKNDRVGG 40
Score = 35.5 bits (82), Expect = 0.025
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 139 GHSVTVFERNDRVGG 153
G VTV E+NDRVGG
Sbjct: 26 GLKVTVLEKNDRVGG 40
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 34.7 bits (80), Expect = 0.043
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 200 EEFDALLLCTGATW-PRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVI 258
D +++ TG P G F L S N P + K V+
Sbjct: 131 LTADFVVVATGHLSEPYIPDFAGLDE----FKGRILHS---ADWPN----PEDLRGKRVL 179
Query: 259 VIGGGDTGCDCIATSL 274
VIG G + D IA L
Sbjct: 180 VIGAGASAVD-IAPEL 194
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 33.8 bits (78), Expect = 0.059
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 203 DALLLCTGATW-PRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIG 261
D ++ TGA P+ PG G+ L + I K K V VIG
Sbjct: 128 DYVVDATGAFSVPKPPGFPGADAEGV-----HLVDV---------LERIDLKGKTVAVIG 173
Query: 262 GGDTGCDCI 270
GG T D
Sbjct: 174 GGHTAIDAA 182
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace
amines. In lower eukaryotes such as aspergillus and in
bacteria the main role of amine oxidases is to provide
a source of ammonium. PAOs in plants, bacteria and
protozoa oxidase spermidine and spermine to an
aminobutyral, diaminopropane and hydrogen peroxide and
are involved in the catabolism of polyamines. Other
members of this family include tryptophan
2-monooxygenase, putrescine oxidase, corticosteroid
binding proteins and antibacterial glycoproteins.
Length = 444
Score = 34.1 bits (78), Expect = 0.065
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G VTV E DRVGG
Sbjct: 14 GFDVTVLEARDRVGG 28
Score = 34.1 bits (78), Expect = 0.065
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G VTV E DRVGG
Sbjct: 14 GFDVTVLEARDRVGG 28
>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family
oxidoreductase 1. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp. The function of this
oxidoreductase is unknown.
Length = 633
Score = 34.1 bits (78), Expect = 0.070
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 134 IVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLA----AEGIEFKTNINV 189
++ GH VT+ ER+ +GG+L+ L R+ LA AE I +
Sbjct: 390 VLAARGHRVTLAERSAHLGGMLRIAARGPGLH------RLAALADWLEAECRRLGVRIRL 443
Query: 190 GKDIAAKELYEEFDA---LLLCTGATWPRDLPIP 220
G I +EL A +LL TG+ PR LP P
Sbjct: 444 GAAIGVEELDRARAAGGVVLLATGSV-PRPLPAP 476
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 30.6 bits (70), Expect = 0.15
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G VTV ER DR+ +E+ + + L GIE N V
Sbjct: 22 GSKVTVVERRDRLLRG---------FDEEIAKILQEKLEKNGIEVLLNTTV 63
Score = 30.6 bits (70), Expect = 0.15
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 189
G VTV ER DR+ +E+ + + L GIE N V
Sbjct: 22 GSKVTVVERRDRLLRG---------FDEEIAKILQEKLEKNGIEVLLNTTV 63
>gnl|CDD|223788 COG0716, FldA, Flavodoxins [Energy production and conversion].
Length = 151
Score = 30.8 bits (70), Expect = 0.37
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 22/102 (21%)
Query: 165 SKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQL 224
+++V + + L A+G E +I + +L E +D LLL T +LP
Sbjct: 15 TEKVAEIIAEELGADGFEVDIDI---RPGIKDDLLESYDELLLGTPTWGAGELP------ 65
Query: 225 SGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTG 266
+ W + E + PI K K V V G GD
Sbjct: 66 ----------DDW-YDFI--EELEPIDFKGKLVAVFGLGDQS 94
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 31.9 bits (73), Expect = 0.39
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G VTV E+ D+ GG
Sbjct: 21 GIPVTVVEQRDKPGG 35
Score = 31.9 bits (73), Expect = 0.39
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G VTV E+ D+ GG
Sbjct: 21 GIPVTVVEQRDKPGG 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 29.0 bits (66), Expect = 0.40
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G V V E+ DR+GG
Sbjct: 19 GKDVLVLEKRDRIGG 33
Score = 29.0 bits (66), Expect = 0.40
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G V V E+ DR+GG
Sbjct: 19 GKDVLVLEKRDRIGG 33
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 31.4 bits (71), Expect = 0.50
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 58 GHSVTVFERNDRVGGLLQY 76
GH+V VFER +VGGL Y
Sbjct: 33 GHTVVVFEREKQVGGLWVY 51
Score = 31.4 bits (71), Expect = 0.50
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 139 GHSVTVFERNDRVGGLLQY 157
GH+V VFER +VGGL Y
Sbjct: 33 GHTVVVFEREKQVGGLWVY 51
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 31.1 bits (71), Expect = 0.62
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 30/75 (40%)
Query: 203 DALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA---------K 253
A+++ TGA+ R L IPG E W + +S K
Sbjct: 101 KAVIIATGAS-ARKLGIPGED-----------EFWGRG---------VSYCATCDGPFFK 139
Query: 254 DKNVIVIGGGDTGCD 268
+K V V+GGGD+ +
Sbjct: 140 NKEVAVVGGGDSAIE 154
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 31.3 bits (71), Expect = 0.63
Identities = 23/113 (20%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 57 VGHSVTVFERNDRVGG--------------LLQYGIPTMKLSKEVVQRRVKLLAAEGIEF 102
G+ V + E DRVGG QY PT G+
Sbjct: 29 AGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLA-------YAKEFGVPL 81
Query: 103 KTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLL 155
+ I G ++ V + +S + V V E R G L
Sbjct: 82 EPFIRDGDNVIGYV--GSSKSTPKRSL---TAAADVRGLVAELEAKARSAGEL 129
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 30.4 bits (69), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 8 EKRLDNTLIQECEPVLSGKVPRIDLEYTINN 38
E RLD +L+ ECE V +G+V Y + N
Sbjct: 423 EGRLDRSLVCECEAVTAGEV-----RYAVEN 448
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 30.5 bits (70), Expect = 1.1
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 45/121 (37%)
Query: 156 QYGIPTMKLSKEVVQRRVKLLAAEG---IEFKTNINVGKDIAAKELYEEFDALLLCTGAT 212
+Y + M L QR KL A G +E G + AK ++L TGA
Sbjct: 278 EYDVDIMNL-----QRASKLEPAAGLIEVELAN----GAVLKAK-------TVILATGAR 321
Query: 213 WPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVS-------PISAKDKNVIVIGGGDT 265
W R++ +PG + N+ V+ P+ K K V VIGGG++
Sbjct: 322 W-RNMNVPGED-----------------EYRNKGVAYCPHCDGPL-FKGKRVAVIGGGNS 362
Query: 266 G 266
G
Sbjct: 363 G 363
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 29.6 bits (67), Expect = 1.6
Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 30/146 (20%)
Query: 139 GHSVTVFERNDRVGGLLQY--------GIPTMKLSKEVVQRRVKLLAAEGIEFK----TN 186
G V + GG L G P L E++++ + G+E
Sbjct: 26 GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVEK 85
Query: 187 INVGKDI----AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQM 242
+ + K YE A+++ TGA R L +PG + E K
Sbjct: 86 VELEGGPFKVKTDKGTYE-AKAVIIATGAG-ARKLGVPGEE-----------EFEGKGV- 131
Query: 243 GNENVSPISAKDKNVIVIGGGDTGCD 268
K K+V+VIGGGD+ +
Sbjct: 132 SYCATCDGFFKGKDVVVIGGGDSAVE 157
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 29.8 bits (68), Expect = 1.8
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 33/90 (36%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKE------VVQRRVKLLAAEGIEFKTN------ 186
G VTV ER R+ L +E V+ ++L EGI+ + N
Sbjct: 194 GSEVTVIERGPRL------------LPREDEDVAAAVR---EILEREGIDVRLNAECIRV 238
Query: 187 ------INVGKDIAAKELYEEFDALLLCTG 210
I VG D +L+ G
Sbjct: 239 ERDGDGIAVGLDCNGGAPEITGSHILVAVG 268
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 29.3 bits (66), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 58 GHSVTVFERNDRVGGL 73
G+ VT++E DR+GG
Sbjct: 23 GYDVTLYEARDRLGGK 38
Score = 29.3 bits (66), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 139 GHSVTVFERNDRVGGL 154
G+ VT++E DR+GG
Sbjct: 23 GYDVTLYEARDRLGGK 38
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 61 VTVFERNDRVGGLLQ 75
VT+FE +DRVGGLL+
Sbjct: 28 VTLFEADDRVGGLLR 42
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 142 VTVFERNDRVGGLLQ 156
VT+FE +DRVGGLL+
Sbjct: 28 VTLFEADDRVGGLLR 42
>gnl|CDD|233877 TIGR02466, TIGR02466, conserved hypothetical protein. This family
consists of uncharacterized proteins in Caulobacter
crescentus CB15, Bdellovibrio bacteriovorus HD100,
Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi
DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The
context of nearby genes differs substantially between
members and does point to any specific biological role
[Hypothetical proteins, Conserved].
Length = 201
Score = 28.2 bits (63), Expect = 3.4
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 182 EFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPI---------PGRQLSGIYF 229
E ++ A++L + D L L W LP PG +SG Y+
Sbjct: 68 ELVQQLDKHVAKFARDLEGDNDGLELRIQKAWVNILPQGGTHSPHLHPGSVISGTYY 124
>gnl|CDD|234720 PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase;
Reviewed.
Length = 233
Score = 28.2 bits (64), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 59 HSVTVFERNDRVGGLLQYGI 78
HSV V++ + VGGL YG+
Sbjct: 129 HSVEVWQGGELVGGL--YGV 146
Score = 28.2 bits (64), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 140 HSVTVFERNDRVGGLLQYGI 159
HSV V++ + VGGL YG+
Sbjct: 129 HSVEVWQGGELVGGL--YGV 146
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 28.8 bits (65), Expect = 3.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
G +V V E DRVGG +
Sbjct: 36 GVNVLVTEARDRVGGNIT 53
Score = 28.8 bits (65), Expect = 3.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
G +V V E DRVGG +
Sbjct: 36 GVNVLVTEARDRVGGNIT 53
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 28.4 bits (64), Expect = 4.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 194 AAKELYEEFDALLLCTGATWPRDLPIP 220
A L+E +D L L T +P D
Sbjct: 376 ALLRLFERYDFLALPTAQVFPFDAEWR 402
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 28.3 bits (64), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 58 GHSVTVFERNDRVGGL 73
G+ VTV E + VGG+
Sbjct: 27 GYPVTVLEADPVVGGI 42
Score = 28.3 bits (64), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 139 GHSVTVFERNDRVGGL 154
G+ VTV E + VGG+
Sbjct: 27 GYPVTVLEADPVVGGI 42
>gnl|CDD|113224 pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This
is a family of putative SAM-dependent
methyltransferases.
Length = 235
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 57 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEV---VQRRVKLLAAEGIE 101
+G V + ER+ V LL+ G+ E+ +Q R+ LL +
Sbjct: 96 LGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSAD 143
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 138 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEV---VQRRVKLLAAEGIE 182
+G V + ER+ V LL+ G+ E+ +Q R+ LL +
Sbjct: 96 LGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSAD 143
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase.
Length = 251
Score = 28.1 bits (62), Expect = 4.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
KHC P+++ + HS F+ + GG
Sbjct: 31 KHCAPIVLRLAWHSAGTFDVKTKTGG 56
>gnl|CDD|235896 PRK06955, PRK06955, biotin--protein ligase; Provisional.
Length = 300
Score = 28.2 bits (63), Expect = 5.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 213 WPRDLPIPGRQLSGI 227
WP DL I GR+L+GI
Sbjct: 137 WPNDLLIAGRKLAGI 151
>gnl|CDD|177642 PHA03414, PHA03414, virion protein; Provisional.
Length = 1337
Score = 28.6 bits (63), Expect = 5.2
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 171 RRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFA 230
RR LA E ++ +N+ DI K +FD L R L G+Q +
Sbjct: 1021 RRNPDLADE-MQTVLGLNLANDIRMKPWKRQFDTFLASQDTFMDRFLH-AGKQAVPVLNG 1078
Query: 231 MSFLESWQKKQMGNENVSPIS 251
M F+ +WQ + N ++ ++
Sbjct: 1079 MKFIHNWQSRMNANLTLNKVA 1099
>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1. Human
Reticulon 4 Interacting Protein 1 is a member of the
medium chain dehydrogenase/ reductase (MDR) family.
Riticulons are endoplasmic reticulum associated proteins
involved in membrane trafficking and neuroendocrine
secretion. The MDR/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 350
Score = 28.0 bits (63), Expect = 5.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 246 NVSPISAKDKNVIVIGGGDTGCDCIATSL 274
++P +A K V+++ GG G A L
Sbjct: 155 GLNPKNAAGKRVLIL-GGSGGVGTFAIQL 182
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase;
Provisional.
Length = 518
Score = 28.2 bits (63), Expect = 5.9
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 160 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELY 199
PT +L +V + + K+L +G+ FKT + VG D ++LY
Sbjct: 204 PTRELCVQV-EDQAKVLG-KGLPFKTALVVGGDAMPQQLY 241
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 27.6 bits (62), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G SVTV ER+ R G
Sbjct: 23 GLSVTVIERSSRAQG 37
Score = 27.6 bits (62), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G SVTV ER+ R G
Sbjct: 23 GLSVTVIERSSRAQG 37
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 26.0 bits (58), Expect = 6.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 88 VQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHS 141
+Q AAE +E NV KDIAA + + T HC IVG +
Sbjct: 14 MQEDAIECAAEALE---KFNVEKDIAAHIKKEFDKKYGPTWHC------IVGKN 58
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 27.9 bits (63), Expect = 6.9
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPT--MKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
G VTV E DR+ +PT +LSKEV +LL G+ T V K
Sbjct: 203 GVEVTVVEAADRI-------LPTEDAELSKEVA----RLLKKLGVRVVTGAKVLGLTLKK 251
Query: 197 E 197
+
Sbjct: 252 D 252
Score = 27.6 bits (62), Expect = 8.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPT--MKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G VTV E DR+ +PT +LSKEV +LL G+ T V
Sbjct: 203 GVEVTVVEAADRI-------LPTEDAELSKEVA----RLLKKLGVRVVTGAKV 244
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1.
Length = 250
Score = 27.7 bits (61), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 128 KHCPPLIVNIVGHSVTVFERNDRVGG 153
K+C P++V + HS F+ R GG
Sbjct: 30 KNCAPIMVRLAWHSAGTFDCQSRTGG 55
>gnl|CDD|233782 TIGR02215, phage_chp_gp8, phage conserved hypothetical protein,
phiE125 gp8 family. This model describes a family of
proteins found exclusively in phage or in prophage
regions of bacterial genomes, including the phage-like
Rhodobacter capsulatus gene transfer agent, which
packages DNA. Members of this family show some
similarity to members of pfam05135, a putative DNA
packaging protein family [Mobile and extrachromosomal
element functions, Prophage functions].
Length = 188
Score = 27.5 bits (61), Expect = 7.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 211 ATWPRDLPIPGRQLSGIY--FAMSFLESW 237
P LP+PGR GI + E+
Sbjct: 111 RLRPAGLPLPGRATGGIEVDLIAGYGEAG 139
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 27.6 bits (62), Expect = 7.7
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 25/104 (24%)
Query: 61 VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK-VTNH 119
V + E R+ P ++ + + L G+E V ++ VT
Sbjct: 194 VILVEAGPRIL-------PMF--PPKLSKYAERALEKLGVEVLLGTPV-TEVTPDGVTLK 243
Query: 120 TPQSDNQTKH--------CPPLIVNIVGHSVTVFERNDRVGGLL 155
+ + PL+ ++ G DR G L+
Sbjct: 244 DGEEEIPADTVVWAAGVRASPLLKDLSG------LETDRRGRLV 281
>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional.
Length = 283
Score = 27.4 bits (62), Expect = 8.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 255 KNVIVIGGGDTG 266
K V++IGGGD G
Sbjct: 78 KRVLIIGGGDGG 89
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 27.3 bits (61), Expect = 8.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 190 GKDIAAKELYEE---FDALLLCTG 210
G+ AAKEL+EE DAL +C G
Sbjct: 158 GQGTAAKELFEEVGPLDALFVCLG 181
>gnl|CDD|223075 PHA03398, PHA03398, viral phosphatase superfamily protein;
Provisional.
Length = 303
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 11 LDNTLIQECEPV 22
LD+TLI + EPV
Sbjct: 135 LDSTLITDEEPV 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,892,717
Number of extensions: 1313501
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1605
Number of HSP's successfully gapped: 130
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)