RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12810
(276 letters)
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 253 bits (648), Expect = 4e-82
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 4/142 (2%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKEL 198
G+ V V++R DR+GGLL YGIP KL K VV+RRVKLLA G+ + N VG+D + EL
Sbjct: 145 GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPEL 204
Query: 199 YEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNE----NVSPISAKD 254
+ A+L+ TG RD+ PG L I A+ +L + K +G+ ++A
Sbjct: 205 RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAG 264
Query: 255 KNVIVIGGGDTGCDCIATSLRQ 276
K+V+V+GGGDT DC+ T++RQ
Sbjct: 265 KHVVVLGGGDTAMDCVRTAIRQ 286
Score = 117 bits (296), Expect = 2e-30
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 115
G+ V V++R DR+GGLL YGIP KL K VV+RRVKLLA G+ + N VG+D +
Sbjct: 145 GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLP 202
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 150 bits (381), Expect = 1e-42
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 133 LIVNIVGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 191
L+ + V ++E+ GL+++G+ P K V+ + ++ F N+ VG+
Sbjct: 25 LLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR 84
Query: 192 DIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPIS 251
D+ +EL + + A++L GA + L IPG +L G++ A +F+ W N +
Sbjct: 85 DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV-GWYNGLPENREL-APD 142
Query: 252 AKDKNVIVIGGGDTGCDCIATSLR 275
+++G G+ D L
Sbjct: 143 LSCDTAVILGQGNVALDVARILLT 166
Score = 71.0 bits (174), Expect = 4e-14
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 54 QHLVGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
+H V ++E+ GL+++G+ P K V+ + ++ F N+ VG+D+
Sbjct: 27 KHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV 86
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 151 bits (384), Expect = 9e-42
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 139 GHS-VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-DIAAK 196
G+S +T+FE+ + VGGL IP +L +VV ++L+ G++ ++ + +I
Sbjct: 210 GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLN 269
Query: 197 ELYEE-FDALLLCTGATWPRDLPIPGR--QLSGIYFAMSFLESWQKKQMGN--ENVSPIS 251
L EE + A + G P+ I Q G Y + FL K SP+
Sbjct: 270 TLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLP 329
Query: 252 AKDKNVIVIGGGDTGCDCIATSLRQ 276
+ VIV+G GDT DC ++LR
Sbjct: 330 SIRGAVIVLGAGDTAFDCATSALRC 354
Score = 83.3 bits (206), Expect = 4e-18
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 58 GHS-VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111
G+S +T+FE+ + VGGL IP +L +VV ++L+ G++ ++ ++
Sbjct: 210 GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSEN 264
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 130 bits (329), Expect = 3e-35
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 136 NIVGHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 194
+ +V + E GL++ G+ P K + ++ K F N+ VG+ +
Sbjct: 30 EDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQ 89
Query: 195 AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKD 254
EL E +DA++ GA R L IPG L G A+ F+ W E VSP
Sbjct: 90 PGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFV-GWYNAHPHFEQVSPD-LSG 147
Query: 255 KNVIVIGGGDTGCDCIATSLRQ 276
+VIG G+ D L
Sbjct: 148 ARAVVIGNGNVALDVARILLTD 169
Score = 60.2 bits (146), Expect = 1e-10
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 58 GHSVTVFERNDRVGGLLQYGI-PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
+V + E GL++ G+ P K + ++ K F N+ VG+ +
Sbjct: 33 DMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHV 88
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 74.7 bits (184), Expect = 3e-15
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 139 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
GH VT+F+ + +GG IP + E ++ +++ G+ K N V
Sbjct: 396 GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT-----A 450
Query: 197 ELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKN 256
+ + FD +L +G PR PI G + + L K +G
Sbjct: 451 DQLQAFDETILASGIV-PRTPPIDGIDHPKVLSYLDVLR--DKAPVG-----------NK 496
Query: 257 VIVIGGGDTGCDC 269
V +IG G G D
Sbjct: 497 VAIIGCGGIGFDT 509
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 58 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 111
GH VT+F+ + +GG IP + E ++ +++ G+ K N V D
Sbjct: 396 GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD 451
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 59.8 bits (146), Expect = 3e-10
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 4 DHQLEKRLDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQH 55
+++ LD ++ + P+ + L Y N RA LS ++ +
Sbjct: 1204 RNEVPDTLDARIVADARPLFEEGEK-MQLAYNARNTQRAIGTRLSSMVTRKF 1254
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 58.5 bits (142), Expect = 7e-10
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 28/143 (19%)
Query: 139 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQ-RRVKLLAAEGIEFKTNINVGKDIAA 195
G+ V + E +GG + +P + V + R L +E + D
Sbjct: 414 GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMTGDDIV 473
Query: 196 KELYEEFDALLLCTGATWPRD-------LPIPGRQLSGIYFAMSFLESWQKKQMGNENVS 248
+ F+ ++ TGATW D +P + + + G
Sbjct: 474 E---FGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG--RLPDG----- 523
Query: 249 PISAKDKNVIVIGGGD--TGCDC 269
K V+V G
Sbjct: 524 ------KKVVVYDDDHYYLGGVV 540
Score = 41.9 bits (99), Expect = 1e-04
Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 72/222 (32%)
Query: 58 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQ-RRVKLLAAEGIEFKTNINVGKD--- 111
G+ V + E +GG + +P + V + R L +E + D
Sbjct: 414 GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMTGDDIV 473
Query: 112 --------IAAKVTNHTPQSDNQTKHCPPLI---------------------VNIV---- 138
A T T P+ V +
Sbjct: 474 EFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDH 533
Query: 139 --------------GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFK 184
G+ V++ +V T +++ +QRR L G+
Sbjct: 534 YYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN---NTFEVN--RIQRR---LIENGVARV 585
Query: 185 TNINVGK----------DIAAKELYEEFDALLLCTGATWPRD 216
T+ V A+ E E DA+++ T PR+
Sbjct: 586 TDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARL-PRE 626
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 54.0 bits (131), Expect = 1e-08
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 41/147 (27%)
Query: 142 VTVFERNDRVGGLLQY---GIP-----TMKLSKEVVQRRVKLLAAEGIEFKTNINV---- 189
+ +E+ D + + G+ +K V + + + G+ +N +
Sbjct: 28 IQWYEKGDFI----SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQ 83
Query: 190 -------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ--- 238
KD+ + E E +D L++ GA P +L IPG+ L IY + Q
Sbjct: 84 PKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIPGKDLDNIY----LMRGRQWAI 138
Query: 239 --KKQMGNENVSPISAKDKNVIVIGGG 263
K++ + V NV+VIG G
Sbjct: 139 KLKQKTVDPEV-------NNVVVIGSG 158
Score = 29.8 bits (68), Expect = 0.92
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTM--KLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAA 195
G VTV + DR L Y L++E+ + + E + ++ + V K +
Sbjct: 172 GKKVTVIDILDRP--LGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD 229
Query: 196 KELYEEFDALLLCTG 210
K Y + D +++ G
Sbjct: 230 KNAY-DADLVVVAVG 243
Score = 28.2 bits (64), Expect = 3.1
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G VTV + DR + L KE + + A I T V
Sbjct: 172 GKKVTVIDILDRP-------LGVY-LDKEFTDVLTEEMEANNITIATGETV 214
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 54.0 bits (131), Expect = 2e-08
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 37/143 (25%)
Query: 142 VTVFERNDRV-----GGLLQY---GIPTMKLSKEVVQRRVKLLAAEGIEFKTN-----IN 188
V VFE + V G + Y G+ K + + GI+ N ++
Sbjct: 31 VKVFEATEWVSHAPCG--IPYVVEGLS--TPDKLMYYPPEVFIKKRGIDLHLNAEVIEVD 86
Query: 189 VG--KDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ-----KK 240
G + +D L+ GA P+ I G L G++ + ++
Sbjct: 87 TGYVRVRENGGEKSYEWDYLVFANGA-SPQVPAIEGVNLKGVF----TADLPPDALAIRE 141
Query: 241 QMGNENVSPISAKDKNVIVIGGG 263
M V +NV++IGGG
Sbjct: 142 YMEKYKV-------ENVVIIGGG 157
Score = 26.7 bits (60), Expect = 8.8
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTM-KLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAK 196
G +VT+ R +RV L + + + +E +++ V L E + + V K +
Sbjct: 171 GKNVTMIVRGERV--LRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDA 228
Query: 197 ELYEEFDALLLCTG 210
Y + + ++L TG
Sbjct: 229 GEY-KAELVILATG 241
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 52.9 bits (128), Expect = 4e-08
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 50/152 (32%)
Query: 142 VTVFERNDRV-----GGLLQYGIPTMKLSKEVVQRRVKLLA--AEGIEFKTNINV----- 189
V E+ + G L Y I + KL+A + K I+
Sbjct: 64 VVTLEKGEIYSYAQCG--LPYVI------SGAIASTEKLIARNVKTFRDKYGIDAKVRHE 115
Query: 190 ------------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLES 236
+ K+++E +D LL+ TG P GR L G++ L++
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV-RPVMPEWEGRDLQGVH----LLKT 170
Query: 237 WQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
K + V ++V +IGGG
Sbjct: 171 IPDAERILKTLETNKV-------EDVTIIGGG 195
Score = 30.6 bits (70), Expect = 0.56
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAKE 197
G V + ERND +G + + + KE + +++L E + FK N V K
Sbjct: 209 GKKVRMIERNDHIGTIYDGDM-AEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG 267
Query: 198 LYEEFDALLLCTG 210
Y + D +L+ G
Sbjct: 268 TY-KADLVLVSVG 279
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 52.2 bits (126), Expect = 5e-08
Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 38/136 (27%)
Query: 164 LSKEVVQ----------RRVKLLAAEGIEFKTNINVGK-DIAAKELY------EEFDALL 206
LSKE + R + + +E K V D AA + E+ L+
Sbjct: 53 LSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLI 112
Query: 207 LCTGATWPRDLPIPGRQLSGIYF------AMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
TG PR L G L+G++ A + + A KN +VI
Sbjct: 113 WATGGD-PRRLSCVGADLAGVHAVRTKEDADRLMAE-------------LDAGAKNAVVI 158
Query: 261 GGGDTGCDCIATSLRQ 276
GGG G + A L +
Sbjct: 159 GGGYIGLE-AAAVLTK 173
Score = 26.8 bits (60), Expect = 8.5
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMK--LSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
G +VT+ E RV + + + + A G++ +T + I
Sbjct: 175 GVNVTLLEALPRV----------LARVAGEALSEFYQAEHRAHGVDLRTGAAM-DCIEGD 223
Query: 197 ELYEEFDALLLCTGATWPRDL 217
+ + + G+ P D+
Sbjct: 224 G--TKVTGVRMQDGSVIPADI 242
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 52.2 bits (126), Expect = 8e-08
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 4 DHQLEKRLDNTLIQE--CEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQH 55
H LD+ ++ + + ++ + Y + N R LS I+ ++
Sbjct: 1240 VHSNGPVLDDDILADPDIQEAINHQTT-ATKTYRLVNTDRTVGTRLSGAIAKKY 1292
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 51.8 bits (125), Expect = 9e-08
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 48/154 (31%)
Query: 142 VTVFERNDRVGGLLQY---GIP------------TMKLSKEVVQRRVKLLAAEGIEFKTN 186
VT+ ++ R+ Y GIP VV+ + +E
Sbjct: 31 VTMIDQASRI----SYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEALVE 86
Query: 187 INV-----------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFL 234
+++ E +D L+L G+ P+ G L+G+ +
Sbjct: 87 TRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS-KANRPPVEGMDLAGVT----PV 141
Query: 235 ESWQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
+ + + V +++GGG
Sbjct: 142 TNLDEAEFVQHAISAGEV-------SKAVIVGGG 168
Score = 29.8 bits (68), Expect = 1.0
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 55 HLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
+ G TV E D++ +P SK + Q L + T V
Sbjct: 180 DMWGIDTTVVELADQI-------MPGF-TSKSLSQMLRHDLEKNDVVVHTGEKV 225
Score = 28.7 bits (65), Expect = 2.3
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 19/82 (23%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV----GKD-- 192
G TV E D++ +P SK + Q L + T V G++
Sbjct: 183 GIDTTVVELADQI-------MPGF-TSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGK 234
Query: 193 ----IAAKELYEEFDALLLCTG 210
I K + D ++L G
Sbjct: 235 VARVITDKRTL-DADLVILAAG 255
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 51.4 bits (124), Expect = 1e-07
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 50/152 (32%)
Query: 142 VTVFERNDRV-----GGLLQYGIPTMKLSKEVVQRRVKLLA--AEGIEFKTNINV----- 189
+ +FER + V G L Y I + +R L+ E + + N+ V
Sbjct: 29 IIMFERGEYVSFANCG--LPYHI------SGEIAQRSALVLQTPESFKARFNVEVRVKHE 80
Query: 190 ------------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLES 236
+ + Y+E +D LLL GA P PIPG + L +
Sbjct: 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVPPIPGVDNPLTH----SLRN 135
Query: 237 WQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
+ + NV ++ V+GGG
Sbjct: 136 IPDMDRILQTIQMNNV-------EHATVVGGG 160
Score = 26.8 bits (60), Expect = 8.2
Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVT 117
G T+ E D+V + +E+ + + +G++ + + +++ +V
Sbjct: 174 GIKTTLLELADQVMT---------PVDREMAGFAHQAIRDQGVDLRLGTAL-SEVSYQVQ 223
Query: 118 NHTPQSDNQTKHCPPLIVNIVGHSVT 143
H I + +++
Sbjct: 224 THVASDAAGEDTAHQHIKGHLSLTLS 249
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 51.0 bits (123), Expect = 1e-07
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 23/126 (18%)
Query: 164 LSKEV------VQRRVKLLAAEGIEFKTNINVGK-DIAAKELY------EEFDALLLCTG 210
LSK+ + R+ A +E+ + D A + + L+L TG
Sbjct: 51 LSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATG 110
Query: 211 ATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCI 270
A PR LP ++ + ++ + ++++GGG G + +
Sbjct: 111 AA-PRALPTLQGATMPVHTLRTLEDA--------RRIQAGLRPQSRLLIVGGGVIGLE-L 160
Query: 271 ATSLRQ 276
A + R
Sbjct: 161 AATART 166
Score = 27.2 bits (61), Expect = 6.8
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 24/83 (28%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMK--LSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
G V++ E R+ M + + AA+G++ + +V
Sbjct: 168 GVHVSLVETQPRL----------MSRAAPATLADFVARYHAAQGVDLRFERSV------- 210
Query: 197 ELYEEF--DALLLCTGATWPRDL 217
+LL G D+
Sbjct: 211 ---TGSVDGVVLLDDGTRIAADM 230
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 50.6 bits (122), Expect = 2e-07
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 41/145 (28%)
Query: 142 VTVFERNDRVGGLLQY---GIP-----TMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D 192
+++ ++ V Y G+ T+ E + L + I+ N V D
Sbjct: 30 ISLIDKQATV----GYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVAMD 85
Query: 193 IAAKELY---------EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQ----- 238
+ + + +D L+L TGA I G Q + +
Sbjct: 86 VENQLIAWTRKEEQQWYSYDKLILATGA-SQFSTQIRGSQTEKLL----KYKFLSGALAA 140
Query: 239 KKQMGNENVSPISAKDKNVIVIGGG 263
+ + V VIG G
Sbjct: 141 VPLL---------ENSQTVAVIGAG 156
Score = 29.0 bits (66), Expect = 1.8
Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 139 GHSVTVFERNDRV-GGLLQYGIPTMKLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAK 196
+V VFE + + + ++ K + ++ V E + + N ++
Sbjct: 170 KKTVHVFESLENLLPKYFDKEM-VAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSE 228
Query: 197 ELYEEFDALLLCTG 210
+ D+ +
Sbjct: 229 QEI-SCDSGIFALN 241
Score = 28.2 bits (64), Expect = 3.6
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
+V VFE + + +P KE+V K L + + F V
Sbjct: 170 KKTVHVFESLENL-------LPKY-FDKEMVAEVQKSLEKQAVIFHFEETV 212
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 50.8 bits (122), Expect = 2e-07
Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 29/147 (19%)
Query: 139 GHSVTVFERNDRVGGLLQYG--IPTMKLSKEVV---QRRVKLLAAEGIEFKTNINVGKDI 193
G++V + + +++GG L +P + + ++ L + E + +
Sbjct: 412 GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMT 471
Query: 194 AAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAK 253
A L D +++ TGA I A + + ++ +
Sbjct: 472 ADDVLQYGADKVIIATGAR-WNTDGTNCLTHDPIPGADA----------SLPDQ--LTPE 518
Query: 254 D---------KNVIVIGGGD--TGCDC 269
K V+++
Sbjct: 519 QVMDGKKKIGKRVVILNADTYFMAPSL 545
Score = 35.0 bits (81), Expect = 0.022
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 58 GHSVTVFERNDRVGGLL 74
G++V + + +++GG L
Sbjct: 412 GYTVHLTDTAEKIGGHL 428
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 49.9 bits (120), Expect = 3e-07
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 26/129 (20%)
Query: 164 LSKEVVQ---------RRVKLLAAEGIEFKTNINVGK-DIAAKELYEE------FDALLL 207
LSK V+ I+ T V D+ + + + DA+++
Sbjct: 46 LSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVI 105
Query: 208 CTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGC 267
TG+ R + +PG QL G+ ++ + + + ++++GGG GC
Sbjct: 106 ATGSR-ARTMALPGSQLPGVVTLRTYGDV--------QVLRDSWTSATRLLIVGGGLIGC 156
Query: 268 DCIATSLRQ 276
+ +AT+ R+
Sbjct: 157 E-VATTARK 164
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 49.4 bits (119), Expect = 5e-07
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 142 VTVFERNDRV-----GGLLQY---GIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV---- 189
VT +E ND + G + + + + L+ G + V
Sbjct: 28 VTAYEMNDNISFLSCG--IALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQVTNVD 85
Query: 190 -------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQ 241
KD+ E E +D L++ TG+ P PIPG S + + +K
Sbjct: 86 PETKTIKVKDLITNEEKTEAYDKLIMTTGS-KPTVPPIPGIDSSRV-YLCKNYNDAKKLF 143
Query: 242 MGNENVSPISAKDKNVIVIGGG 263
K + +IG G
Sbjct: 144 EEAPKA-------KTITIIGSG 158
Score = 28.6 bits (65), Expect = 2.2
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV----GKD-- 192
++V + + ++RV L +Y KE K A G+ V D
Sbjct: 172 NYNVNLIDGHERV--LYKY------FDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDE 223
Query: 193 ----IAAKELYEEFDALLLCTG 210
+ + D +LC G
Sbjct: 224 IITKTLDGKEI-KSDIAILCIG 244
Score = 27.5 bits (62), Expect = 5.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
++V + + ++RV L +Y KE K A G+ V
Sbjct: 172 NYNVNLIDGHERV--LYKY------FDKEFTDILAKDYEAHGVNLVLGSKV 214
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 48.8 bits (116), Expect = 8e-07
Identities = 45/244 (18%), Positives = 77/244 (31%), Gaps = 52/244 (21%)
Query: 51 ISIQHLV----GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNI 106
++ + L+ VT+FER GG+ Y T+ V L +
Sbjct: 20 VTAKALLAEKAFDQVTLFERRGSPGGVWNYT-STLSNKLPVPSTNPILTTEPIVGPAALP 78
Query: 107 NVGKDIAAKVTNHTPQ-----SDNQTKHCPPLIVNIVGHSVTVFER-NDRVGGLLQYGIP 160
+ + +TP D + P + + E LL +
Sbjct: 79 VYPSPLYRDLQTNTPIELMGYCD---QSFKPQTLQFPHRHT-IQEYQRIYAQPLLPF--- 131
Query: 161 TMKLSKEVVQRRVKLLAAEGIEFKTN----INVGKDIAAKELYEEFDALLLCTGA-TWPR 215
+KL+ +V+ IE K G + + FDA+ +C G P
Sbjct: 132 -IKLATDVLD----------IEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPY 180
Query: 216 DLPIPGRQLSGIYFAMSFLESWQKKQMGNENVS-----PISAKDKNVIVIGGGDTGCDCI 270
I G L+ + K G+ S P ++V+V+GG + D +
Sbjct: 181 IPNIKG------------LDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAND-L 227
Query: 271 ATSL 274
L
Sbjct: 228 VRHL 231
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 46.8 bits (112), Expect = 3e-06
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 51/153 (33%)
Query: 142 VTVFERNDRV-----GGLLQYGIPTMKLSKEVVQRRVKLLA--AEGIEFKTNINV----- 189
+ + ER + + G L Y I V+ R KLL E + + N+++
Sbjct: 64 IIMVERGEYISFANCG--LPYYI------GGVITERQKLLVQTVERMSKRFNLDIRVLSE 115
Query: 190 ------------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPG-RQLSGIYFAMSFLE 235
K++ E Y E +D L+L GA P IPG + ++ L
Sbjct: 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA-KPIVPSIPGIEEAKALF----TLR 170
Query: 236 SWQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
+ K + + ++ VIGGG
Sbjct: 171 NVPDTDRIKAYIDEKKP-------RHATVIGGG 196
Score = 28.7 bits (65), Expect = 2.3
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAKE 197
G VT+ E ++V + Y + + + + V+L+ +G+ + N V + +
Sbjct: 210 GIEVTLVEMANQVMPPIDYEM-AAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSV 268
Query: 198 LYEEFDALLLCTG 210
+ + D L+L G
Sbjct: 269 I--QTDMLILAIG 279
Score = 28.0 bits (63), Expect = 4.1
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 13/65 (20%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV----GKDIA 113
G VT+ E ++V + E+ + + +E V
Sbjct: 210 GIEVTLVEMANQVMP---------PIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV 260
Query: 114 AKVTN 118
++ +
Sbjct: 261 VRLKS 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 3e-06
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 87/261 (33%)
Query: 5 HQLEKRLDNTLIQECEP----VL----SGKVPRIDLEYTINNECRAFTATLSYHISIQHL 56
H ++ L L + VL + K + N C+ L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WN---AFNLSCK----IL--------- 269
Query: 57 VGHSVTVFERN----DRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDI 112
+T R D + I + + L E K +
Sbjct: 270 ----LTT--RFKQVTDFLSAATTTHIS-------LDHHSMTLTPDEV----------KSL 306
Query: 113 AAKVTNHTPQSD-NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQR 171
K + PQ + P ++I+ S+ + KL+ +++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNC--DKLTT-IIES 361
Query: 172 RVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAM 231
+ +L E E++ ++++ + +P IP LS I+F +
Sbjct: 362 SLNVL--EPAEYR------------KMFDRL--------SVFPPSAHIPTILLSLIWFDV 399
Query: 232 S------FLESWQKKQMGNEN 246
+ K + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQ 420
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 46.3 bits (111), Expect = 4e-06
Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 53/152 (34%)
Query: 142 VTVFERNDRV-----GGLLQYGIPTMKLSKEVVQRRVKLLA--AEGIEFKTNINV----- 189
+ +FE++ + L Y I EVV+ R LA E + I V
Sbjct: 29 IIIFEKDRDMSFANCA--LPYVI------GEVVEDRRYALAYTPEKFYDRKQITVKTYHE 80
Query: 190 ------------GKDIAAKELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLES 236
+ E +EE +D L+L GA G + + L +
Sbjct: 81 VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA-SA---NSLGFESDITF----TLRN 132
Query: 237 WQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
+ + + V V+V+G G
Sbjct: 133 LEDTDAIDQFIKANQV-------DKVLVVGAG 157
Score = 31.3 bits (72), Expect = 0.29
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV----GKD-I 193
G T+ R+D++ + + ++ Q + L I ++ N + G +
Sbjct: 171 GLHPTLIHRSDKI---NKL------MDADMNQPILDELDKREIPYRLNEEINAINGNEIT 221
Query: 194 AAKELYEEFDALLLCTG 210
E +D ++ G
Sbjct: 222 FKSGKVEHYDMIIEGVG 238
Score = 26.7 bits (60), Expect = 8.6
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G T+ R+D++ + + ++ Q + L I ++ N +
Sbjct: 171 GLHPTLIHRSDKI---NKL------MDADMNQPILDELDKREIPYRLNEEI 212
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 46.0 bits (110), Expect = 5e-06
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 164 LSKEVVQ----------RRVKLLAAEGIEFKTNINVGKDIAAKELYEE------FDALLL 207
LSK ++ R K + IE ++ V D ++L + L+L
Sbjct: 45 LSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVL 104
Query: 208 CTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGC 267
TGA R L +P L + + + ES E + K+V+VIG G G
Sbjct: 105 ATGAR-NRMLDVPNASLPDVLYLRTLDES--------EVLRQRMPDKKHVVVIGAGFIGL 155
Query: 268 DCIATSLRQ 276
+ A + R
Sbjct: 156 E-FAATARA 163
Score = 27.1 bits (61), Expect = 6.7
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 15/81 (18%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMK--LSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
G V V E RV M ++ E+ + GI +
Sbjct: 165 GLEVDVVELAPRV----------MARVVTPEISSYFHDRHSGAGIRMHYGVRA---TEIA 211
Query: 197 ELYEEFDALLLCTGATWPRDL 217
+ ++L G T P DL
Sbjct: 212 AEGDRVTGVVLSDGNTLPCDL 232
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 45.6 bits (109), Expect = 9e-06
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 42/152 (27%)
Query: 142 VTVFERNDRVGGLLQY---GIP-----TMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-D 192
+ VF++N + + G+ + + + + L + G + V D
Sbjct: 64 IVVFDQNSNI----SFLGAGMALWIGEQIAGPEGLFYSDKEELESLGAKVYMESPVQSID 119
Query: 193 IAAK--------ELYEE-FDALLLCTGATWPRDLPIPGRQLSGIYFAMS-------FLES 236
AK + + E +D L+ TG+ P PI G ++ F++
Sbjct: 120 YDAKTVTALVDGKNHVETYDKLIFATGS-QPILPPIKGAEIKEGSLEFEATLENLQFVKL 178
Query: 237 WQ-----KKQMGNENVSPISAKDKNVIVIGGG 263
+Q ++ N+++ K V V+G G
Sbjct: 179 YQNSADVIAKLENKDI-------KRVAVVGAG 203
Score = 29.1 bits (66), Expect = 1.7
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 139 GHSVTVFERNDRV-GGLLQYGIPTMKLSKEVVQRRVKLLAAEGI-EFKTNINVGKDIAAK 196
G V + + D G + T ++K + + ++L E + E N V K I K
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDL-TDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDK 275
Query: 197 ELYEEFDALLLCTG 210
Y + D ++L G
Sbjct: 276 NEY-DVDMVILAVG 288
Score = 28.3 bits (64), Expect = 2.9
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G V + + D + +++ K + GI+ V
Sbjct: 217 GKEVVLIDVVDTC-------LAGY-YDRDLTDLMAKNMEEHGIQLAFGETV 259
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 43.7 bits (104), Expect = 3e-05
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 42/139 (30%)
Query: 164 LSKEVVQ----------RRVKLLAAEGIEFKTNINVGK-DIAAKELY------EEFDALL 206
LSK + R AA+ I+ V + +++ ++D L+
Sbjct: 48 LSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLV 107
Query: 207 LCTGATWPRDLPIPGRQL---SGIYF------AMSFLESWQKKQMGNENVSPISAKDKNV 257
L TG PR LP+ + + + A D +
Sbjct: 108 LATGGR-PRPLPVASGAVGKANNFRYLRTLEDAECIRRQL--------------IADNRL 152
Query: 258 IVIGGGDTGCDCIATSLRQ 276
+VIGGG G + +A + +
Sbjct: 153 VVIGGGYIGLE-VAATAIK 170
Score = 27.6 bits (62), Expect = 4.4
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMK--LSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAK 196
VT+ + RV ++ + V L G++ +T V
Sbjct: 172 NMHVTLLDTAARV----------LERVTAPPVSAFYEHLHREAGVDIRTGTQV-CGFEMS 220
Query: 197 ELYEEFDALLLCTGATWPRDL 217
++ A+L G P DL
Sbjct: 221 TDQQKVTAVLCEDGTRLPADL 241
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 42.3 bits (99), Expect = 1e-04
Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 40/222 (18%)
Query: 54 QHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 113
+ + FE+ GG Y + + N K+
Sbjct: 27 KGAEIPELVCFEKQADWGGQWNY-------TWRTGLDENGEPVHSSMYRYLWSNGPKECL 79
Query: 114 AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFER-NDRV--GGLLQYGIPTMKLSKEVVQ 170
++ K V +++ RV G+ +Y ++ + V
Sbjct: 80 E--FADYTFDEHFGKPIAS----YPPREV-LWDYIKGRVEKAGVRKY----IRFNTAV-- 126
Query: 171 RRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGA-TWPRDLPIPGRQLSGIYF 229
R V+ T + D EEFD ++ CTG + P G
Sbjct: 127 RHVEFNEDSQTFTVTVQDHTTD---TIYSEEFDYVVCCTGHFSTPYVPEFEG-------- 175
Query: 230 AMSFLESWQKKQMGNEN-VSPISAKDKNVIVIGGGDTGCDCI 270
E + + + + + KDK V+++G + D
Sbjct: 176 ----FEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIG 213
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 19/104 (18%)
Query: 180 GIEFKTNINVGK-DIAAKELY------EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMS 232
I+ T+ D K + +++ L++ +G+ + +P I+ S
Sbjct: 76 NIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSI-ANKIKVPHAD--EIFSLYS 132
Query: 233 FLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ ++ + +IGGG G + A ++
Sbjct: 133 YDDA--------LKIKDECKNKGKAFIIGGGILGIEL-AQAIID 167
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 40.6 bits (96), Expect = 4e-04
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 180 GIEFKTNINVGK-DIAAKELY-----EEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSF 233
T+ V D + ++ + L+L GA P +P+ G +Y
Sbjct: 74 NARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAE-PIRVPVEGDAQDALYPINDL 132
Query: 234 LESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ +A + V+++G G GC+ A L
Sbjct: 133 EDY--------ARFRQAAAGKRRVLLLGAGLIGCEF-ANDLSS 166
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 37.9 bits (89), Expect = 0.002
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 42/121 (34%)
Query: 156 QYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPR 215
+Y + + ++ A EG + G + A+ ++++ TGA W R
Sbjct: 68 EYDVDVIDSQSA---SKLIPAAVEGGLHQIETASGAVLKAR-------SIIVATGAKW-R 116
Query: 216 DLPIPG-RQLSGIYFAMSFLESWQKKQMGNENVSPISA---------KDKNVIVIGGGDT 265
++ +PG Q G ++ K K V VIGGG++
Sbjct: 117 NMNVPGEDQYRT---------------KG------VTYCPHCDGPLFKGKRVAVIGGGNS 155
Query: 266 G 266
G
Sbjct: 156 G 156
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 37.9 bits (89), Expect = 0.003
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 40/110 (36%)
Query: 167 EVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPG-RQLS 225
V+ + F N AK +++ TG T + L + G +
Sbjct: 88 IREGVEVRSIKKTQGGFDIETN-DDTYHAK-------YVIITTGTTH-KHLGVKGESEYF 138
Query: 226 GIYFAMSFLESWQKKQMGNENVSPISA---------KDKNVIVIGGGDTG 266
G G S K K V+ IGGG++G
Sbjct: 139 G---------------KG------TSYCSTCDGYLFKGKRVVTIGGGNSG 167
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 37.0 bits (86), Expect = 0.005
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
GH + V E++ +GG
Sbjct: 23 GHEIIVLEKSAMIGGRFT 40
Score = 37.0 bits (86), Expect = 0.005
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
GH + V E++ +GG
Sbjct: 23 GHEIIVLEKSAMIGGRFT 40
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 36.4 bits (84), Expect = 0.007
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 59 HSVTVFERNDRVGG 72
H T+ ER D VGG
Sbjct: 31 HDYTILERTDHVGG 44
Score = 36.4 bits (84), Expect = 0.007
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 140 HSVTVFERNDRVGG 153
H T+ ER D VGG
Sbjct: 31 HDYTILERTDHVGG 44
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 36.6 bits (85), Expect = 0.007
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 13/75 (17%)
Query: 201 EFDALLLCTGATWPRDLP-IPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIV 259
A++ TG P G + FA L S +P V +
Sbjct: 120 LARAVISATGTWGEAYTPEYQGLES----FAGIQLHSAHYS-------TPAPFAGMRVAI 168
Query: 260 IGGGDTGCDCIATSL 274
IGGG++G I +
Sbjct: 169 IGGGNSGAQ-ILAEV 182
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 36.4 bits (85), Expect = 0.007
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 177 AAEGIEFKTNINVGK-DIAAKELY-----EEFDALLLCTGATWPRDLPIPGRQLSGIYFA 230
GIE + D K + +D L+L TGA R+ I G++ +
Sbjct: 71 RKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAR-AREPQIKGKE--YL-LT 126
Query: 231 MSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ + + + I+IGGG G + A +L +
Sbjct: 127 LRTIFD-------ADRIKESIENSGEAIIIGGGFIGLEL-AGNLAE 164
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 36.5 bits (85), Expect = 0.008
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 42/123 (34%)
Query: 156 QYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPR 215
Y + + ++ A EG + G + A+ ++++ TGA W R
Sbjct: 279 DYDVDVIDSQSAS---KLVPAATEGGLHQIETASGAVLKAR-------SIIIATGAKW-R 327
Query: 216 DLPIPG-RQLSGIYFAMSFLESWQKKQMGNENVSPISA---------KDKNVIVIGGGDT 265
++ +PG Q G ++ K K V VIGGG++
Sbjct: 328 NMNVPGEDQYRT---------------KG------VTYCPHCDGPLFKGKRVAVIGGGNS 366
Query: 266 GCD 268
G +
Sbjct: 367 GVE 369
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 36.0 bits (84), Expect = 0.009
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 30/77 (38%)
Query: 203 DALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKKQMGNENVSPISA--------- 252
DA++L GA + L G + G + G ISA
Sbjct: 114 DAVILAIGAV-AKRLSFVGSGEVLGGF-----------WNRG------ISACAVCDGAAP 155
Query: 253 --KDKNVIVIGGGDTGC 267
++K + VIGGGD+
Sbjct: 156 IFRNKPLAVIGGGDSAM 172
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 35.6 bits (83), Expect = 0.010
Identities = 20/124 (16%), Positives = 29/124 (23%), Gaps = 47/124 (37%)
Query: 154 LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATW 213
+ +Y + V+ RV EF I+ G+ A L+L G T
Sbjct: 66 IERYP------TIHWVEGRVTDAKGSFGEFIVEIDGGRRETAG-------RLILAMGVTD 112
Query: 214 PRDLPIPG-RQLSGI----------YFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGG 262
I G R+ G Y + VI
Sbjct: 113 -ELPEIAGLRERWGSAVFHCPYCHGYEL----------------------DQGKIGVIAA 149
Query: 263 GDTG 266
Sbjct: 150 SPMA 153
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.6 bits (83), Expect = 0.011
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 39/109 (35%)
Query: 167 EVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPG-RQLS 225
V+ V+ + G EF + A +++L G R L +PG ++ +
Sbjct: 86 PVLLDIVEKIENRGDEFVVKTKRKGEFKAD-------SVILGIGVK-RRKLGVPGEQEFA 137
Query: 226 GIYFAMSFLESWQKKQMGNENVSPISA---------KDKNVIVIGGGDT 265
G G IS K++ V VIGGGD+
Sbjct: 138 G---------------RG------ISYCSVADAPLFKNRVVAVIGGGDS 165
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 35.9 bits (83), Expect = 0.011
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 180 GIEFKTNINVGK-DIAAKELYEE------FDALLLCTGATWPRDLPI---PGRQLSGIYF 229
G+ T V + D+ + ++ L+ TG T PR L G ++
Sbjct: 104 GVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGT-PRSLSAIDRAGAEVKSRTT 162
Query: 230 AMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGC 267
+ ++ + IS + K++ +IGGG G
Sbjct: 163 LFRKIGDFRS-------LEKISREVKSITIIGGGFLGS 193
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 35.4 bits (82), Expect = 0.014
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 58 GHSVTVFERNDRVGG 72
GH V VFER GG
Sbjct: 23 GHEVEVFERLPITGG 37
Score = 35.4 bits (82), Expect = 0.014
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 139 GHSVTVFERNDRVGG 153
GH V VFER GG
Sbjct: 23 GHEVEVFERLPITGG 37
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 35.0 bits (80), Expect = 0.020
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 46 TLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75
+Y+ + ++T+ E +R+GG +
Sbjct: 18 AAAYYAE-RAFPDLNITLLEAGERLGGKVA 46
Score = 34.2 bits (78), Expect = 0.039
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
++T+ E +R+GG +
Sbjct: 29 DLNITLLEAGERLGGKVA 46
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 34.7 bits (79), Expect = 0.026
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 46 TLSYHISIQHLVGHSVTVFERNDRVGGLLQ 75
SYH+S + V + E ++R+GG ++
Sbjct: 16 AASYHLS-RAPCPPKVVLVESSERLGGWIR 44
Score = 32.4 bits (73), Expect = 0.16
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
V + E ++R+GG ++
Sbjct: 27 PPKVVLVESSERLGGWIR 44
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 34.7 bits (79), Expect = 0.030
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
G +VTVFE + GG L+
Sbjct: 36 GLNVTVFEAEGKAGGKLR 53
Score = 34.7 bits (79), Expect = 0.030
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
G +VTVFE + GG L+
Sbjct: 36 GLNVTVFEAEGKAGGKLR 53
Score = 27.8 bits (61), Expect = 4.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 242 MGNENVSPISAKDKNVIVIGGGDTG 266
M + K V VIG G +G
Sbjct: 1 MAPSAGEDKHSSAKRVAVIGAGVSG 25
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 34.5 bits (80), Expect = 0.032
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 134 IVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-- 191
++ +G +F R +R+ + + V+ + I T +V +
Sbjct: 194 VIKRLGIDSYIFARGNRI-------LRKF--DESVINVLENDMKKNNINIVTFADVVEIK 244
Query: 192 ---------DIAAKELYEEFDALLLCTG 210
++ +YE FD ++ C G
Sbjct: 245 KVSDKNLSIHLSDGRIYEHFDHVIYCVG 272
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 52 SIQHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
++ +G +F R +R+ + + V+ + I T +V +
Sbjct: 193 NVIKRLGIDSYIFARGNRI-------LRKF--DESVINVLENDMKKNNINIVTFADVVE 242
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 34.2 bits (79), Expect = 0.038
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 23/86 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G + R + + E + + +G+E + NV +
Sbjct: 237 GRRTVMLVRTEPL-------KLIK--DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANG 287
Query: 192 -------DIAAKELYEEFDALLLCTG 210
E+ E D + L G
Sbjct: 288 RVQAVVAMTPNGEMRIETDFVFLGLG 313
Score = 30.7 bits (70), Expect = 0.57
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 201 EFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVI 260
+ L+L GA P L +PG G++ + +E + V+V+
Sbjct: 174 KAKNLILAVGA-GPGTLDVPGVNAKGVFDHATLVEELDYEP------------GSTVVVV 220
Query: 261 GGG 263
GG
Sbjct: 221 GGS 223
Score = 30.0 bits (68), Expect = 0.91
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G + R + + E + + +G+E + NV +
Sbjct: 237 GRRTVMLVRTEPL-------KLIK--DNETRAYVLDRMKEQGMEIISGSNVTR 280
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 34.0 bits (79), Expect = 0.040
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 18/80 (22%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV--------G 190
G VTV R + + + + AEGIE +
Sbjct: 199 GSKVTVLAR-NTL-------FFRE--DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGE 248
Query: 191 KDIAAKELYEEFDALLLCTG 210
+ D LL+ TG
Sbjct: 249 FVLTTTHGELRADKLLVATG 268
Score = 27.9 bits (63), Expect = 3.9
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
G VTV R + + + + AEGIE +
Sbjct: 199 GSKVTVLAR-NTL-------FFRE--DPAIGEAVTAAFRAEGIEVLEHTQA 239
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 34.2 bits (78), Expect = 0.042
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
+T+ E + RVGG +Q
Sbjct: 34 PLELTLVEASPRVGGKIQ 51
Score = 34.2 bits (78), Expect = 0.042
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
+T+ E + RVGG +Q
Sbjct: 34 PLELTLVEASPRVGGKIQ 51
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 33.7 bits (77), Expect = 0.058
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 58 GHSVTVFERNDRVGG 72
G+ VTV E R GG
Sbjct: 34 GYKVTVLEARTRPGG 48
Score = 33.7 bits (77), Expect = 0.058
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 139 GHSVTVFERNDRVGG 153
G+ VTV E R GG
Sbjct: 34 GYKVTVLEARTRPGG 48
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 33.8 bits (77), Expect = 0.058
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
G + E + R+GG +
Sbjct: 39 GTDAVLLESSARLGGAVG 56
Score = 33.8 bits (77), Expect = 0.058
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
G + E + R+GG +
Sbjct: 39 GTDAVLLESSARLGGAVG 56
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 33.3 bits (76), Expect = 0.073
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 58 GHSVTVFERNDRVGG 72
GH VTV E ++R GG
Sbjct: 56 GHQVTVLEASERPGG 70
Score = 33.3 bits (76), Expect = 0.073
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 139 GHSVTVFERNDRVGG 153
GH VTV E ++R GG
Sbjct: 56 GHQVTVLEASERPGG 70
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 33.1 bits (75), Expect = 0.074
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKT 104
V + E++ GG + S +V++ L E G+ +
Sbjct: 63 NVQVAIIEQSVSPGG--GAWLGGQLFSAMIVRKPAHLFLDEIGVAYDE 108
Score = 33.1 bits (75), Expect = 0.074
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKT 185
V + E++ GG + S +V++ L E G+ +
Sbjct: 63 NVQVAIIEQSVSPGG--GAWLGGQLFSAMIVRKPAHLFLDEIGVAYDE 108
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.9 bits (76), Expect = 0.079
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 46/124 (37%)
Query: 154 LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATW 213
+++Y + V + F+ A+ +LL TG
Sbjct: 70 VMKYPSVHY-----YEKTVVMITKQSTGLFEIVTKDHTKYLAE-------RVLLATGMQE 117
Query: 214 PRDLPIPG-RQLSGI----------YFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGG 262
IP R+ G + KD+ +I+I
Sbjct: 118 -EFPSIPNVREYYGKSLFSCPYCDGWE----------------------LKDQPLIIISE 154
Query: 263 GDTG 266
+
Sbjct: 155 NEDH 158
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 32.9 bits (76), Expect = 0.086
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 39/93 (41%)
Query: 183 FKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKKQ 241
F + GK A A+++CTG+ P+ G G
Sbjct: 95 FTIKLEGGKTELA-------KAVIVCTGSA-PKKAGFKGEDEFFG--------------- 131
Query: 242 MGNENVSPISA---------KDKNVIVIGGGDT 265
G +S K+K V V+GGGDT
Sbjct: 132 KG------VSTCATCDGFFYKNKEVAVLGGGDT 158
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 32.9 bits (76), Expect = 0.092
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 32/76 (42%)
Query: 203 DALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA---------- 252
DA++L TGA+ + + +PG + WQK G ISA
Sbjct: 132 DAIILATGAS-AKRMHLPGEE-----------TYWQK---G------ISACAVCDGAVPI 170
Query: 253 -KDKNVIVIGGGDTGC 267
++K + VIGGGD+ C
Sbjct: 171 FRNKPLAVIGGGDSAC 186
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 32.8 bits (74), Expect = 0.094
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 20/115 (17%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKTNIN--VGKDIA- 113
+T+ E GG + S V+++ + E G+ ++ + V K A
Sbjct: 104 DLRITIVEAGVAPGG--GAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAAL 161
Query: 114 --------------AKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL 154
K+ N T D T+ + E R+ G+
Sbjct: 162 FTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGV 216
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.2 bits (76), Expect = 0.094
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G SV V E DRVGG
Sbjct: 28 GLSVAVIEARDRVGG 42
Score = 33.2 bits (76), Expect = 0.094
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G SV V E DRVGG
Sbjct: 28 GLSVAVIEARDRVGG 42
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 32.9 bits (74), Expect = 0.096
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFK 103
V + E + GG + S V+++ L E I ++
Sbjct: 90 DLKVCIIESSVAPGG--GSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134
Score = 32.9 bits (74), Expect = 0.096
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFK 184
V + E + GG + S V+++ L E I ++
Sbjct: 90 DLKVCIIESSVAPGG--GSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 32.5 bits (75), Expect = 0.12
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 32/75 (42%)
Query: 203 DALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKKQMGNENVSPISA--------- 252
A++L GA R L +PG Q L G G +S+
Sbjct: 116 RAVILAMGAA-ARYLQVPGEQELLG---------------RG------VSSCATCDGFFF 153
Query: 253 KDKNVIVIGGGDTGC 267
+D+++ VIGGGD+
Sbjct: 154 RDQDIAVIGGGDSAM 168
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 32.5 bits (75), Expect = 0.12
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 32/73 (43%)
Query: 203 DALLLCTGATWPRDLPIPG-RQLSGIYFAMSFLESWQKKQMGNENVSPISA--------- 252
A++L TGA PR L IPG G G +S
Sbjct: 113 KAVILATGAD-PRKLGIPGEDNFWG---------------KG------VSTCATCDGFFY 150
Query: 253 KDKNVIVIGGGDT 265
K K V+VIGGGD
Sbjct: 151 KGKKVVVIGGGDA 163
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 32.5 bits (75), Expect = 0.13
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 32/73 (43%)
Query: 203 DALLLCTGATWPRDLPIPGRQ-LSGIYFAMSFLESWQKKQMGNENVSPISA--------- 252
++++ TG + P+ I G G G +S
Sbjct: 104 KSVIIATGGS-PKRTGIKGESEYWG---------------KG------VSTCATCDGFFY 141
Query: 253 KDKNVIVIGGGDT 265
K+K V V+GGGDT
Sbjct: 142 KNKEVAVLGGGDT 154
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 32.5 bits (75), Expect = 0.13
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 30/74 (40%)
Query: 203 DALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISA---------K 253
DAL++ TGA+ R L +P + K G +SA +
Sbjct: 106 DALIIATGAS-ARYLGLPSEE--------------AFKGRG------VSACATSDGFFYR 144
Query: 254 DKNVIVIGGGDTGC 267
++ V VIGGG+T
Sbjct: 145 NQKVAVIGGGNTAV 158
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 32.5 bits (75), Expect = 0.14
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTN---------INV 189
G V+V E +R+ +PT E+ + L GI +
Sbjct: 194 GAQVSVVEARERI-------LPTY--DSELTAPVAESLKKLGIALHLGHSVEGYENGCLL 244
Query: 190 GKDIAAKELYEEFDALLLCTG 210
D +L E D +L+ G
Sbjct: 245 ANDGKGGQLRLEADRVLVAVG 265
Score = 27.5 bits (62), Expect = 6.2
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV-GKDIAAKV 116
G V+V E +R+ +PT E+ + L GI +V G + +
Sbjct: 194 GAQVSVVEARERI-------LPTY--DSELTAPVAESLKKLGIALHLGHSVEGYENGCLL 244
Query: 117 T 117
Sbjct: 245 A 245
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 32.3 bits (72), Expect = 0.17
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
GH V +F+++ GG
Sbjct: 25 GHQVHLFDKSRGSGG 39
Score = 32.3 bits (72), Expect = 0.17
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
GH V +F+++ GG
Sbjct: 25 GHQVHLFDKSRGSGG 39
Score = 27.7 bits (60), Expect = 4.6
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 255 KNVIVIGGGDTGCDCIATSLRQ 276
+ +IG G G A +L
Sbjct: 3 VPIAIIGTGIAGLSA-AQALTA 23
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 32.2 bits (74), Expect = 0.18
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 172 RVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTG--ATWPRDLPIPGRQLSGIYF 229
R + L EG FK + G AK A+++ G A PR + PG
Sbjct: 87 RAETLEREGDLFKVTTSQGNAYTAK-------AVIIAAGVGAFEPRRIGAPG-------- 131
Query: 230 AMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCD 268
++ + + S + K V+++GGGD+ D
Sbjct: 132 ----EREFEGRGVYYAVKSKAEFQGKRVLIVGGGDSAVD 166
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 32.1 bits (73), Expect = 0.18
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 58 GHSVTVFERNDRVGG 72
G V + E +R+GG
Sbjct: 24 GKKVLLLEGGERLGG 38
Score = 32.1 bits (73), Expect = 0.18
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 139 GHSVTVFERNDRVGG 153
G V + E +R+GG
Sbjct: 24 GKKVLLLEGGERLGG 38
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 31.8 bits (71), Expect = 0.22
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
G S + + N+ GGL
Sbjct: 34 GPSWMIVDSNETPGGLAS 51
Score = 31.8 bits (71), Expect = 0.22
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
G S + + N+ GGL
Sbjct: 34 GPSWMIVDSNETPGGLAS 51
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 31.7 bits (72), Expect = 0.29
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G +V V E DRVGG
Sbjct: 27 GLNVVVLEARDRVGG 41
Score = 31.7 bits (72), Expect = 0.29
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G +V V E DRVGG
Sbjct: 27 GLNVVVLEARDRVGG 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.30
Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 78/212 (36%)
Query: 31 DLEYTI----NNECRA------FTATLSYH----------ISIQHLVGHSVTVFERNDRV 70
LE+ + + A F L + LVG F
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK----F------ 64
Query: 71 GGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHC 130
L Y + + + V + ++L EF+ G DI H
Sbjct: 65 ---LGY-V-SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------HA---------- 103
Query: 131 PPLIVNIVGHSVTVFERNDRVGGLLQY-------GIPTMK-----LSKEVVQRRVKLLAA 178
L ++ + T + + + Y P K L + V + +L+A
Sbjct: 104 --LAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 179 ---EGIEFKTNINVG-KDIAAKELYEEFDALL 206
+G N + +++ ++LY+ + L+
Sbjct: 160 FGGQG-----NTDDYFEEL--RDLYQTYHVLV 184
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 31.5 bits (70), Expect = 0.31
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 58 GHSVTVFE-RNDRVGGLLQ 75
GH VT+ E +RVGG ++
Sbjct: 67 GHDVTILEANANRVGGRIK 85
Score = 31.5 bits (70), Expect = 0.31
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 139 GHSVTVFE-RNDRVGGLLQ 156
GH VT+ E +RVGG ++
Sbjct: 67 GHDVTILEANANRVGGRIK 85
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 31.3 bits (72), Expect = 0.34
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 22/85 (25%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G + V E D + + +++V+ K N
Sbjct: 208 GSRLDVVEMMDGL-------MQGA--DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG 258
Query: 192 ------DIAAKELYEEFDALLLCTG 210
A + + +DA+L+ G
Sbjct: 259 VYVTFEGANAPKEPQRYDAVLVAAG 283
Score = 26.7 bits (60), Expect = 8.9
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 17/67 (25%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVT 117
G + V E D + + +++V+ K N K
Sbjct: 208 GSRLDVVEMMDGL-------MQGA--DRDLVKVWQKQNEYRFDNIMVN--------TKTV 250
Query: 118 NHTPQSD 124
P+ D
Sbjct: 251 AVEPKED 257
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 31.3 bits (70), Expect = 0.36
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 43 FTATLSYHISIQHLVGHSVTVFERNDRVGGL 73
F T++ ++ Q V V ER +GG
Sbjct: 18 FGLTIAERVATQL--DKRVLVLERRPHIGGN 46
Score = 28.2 bits (62), Expect = 3.2
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 139 GHSVTVFERNDRVGGL 154
V V ER +GG
Sbjct: 31 DKRVLVLERRPHIGGN 46
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 31.3 bits (72), Expect = 0.37
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTN------------ 186
G VTV E D+ +P + ++V + K+L +G++
Sbjct: 203 GAEVTVLEAMDKF-------LPAV--DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ 253
Query: 187 INVGKDIAAKELYEEFDALLLCTG 210
+ V A E + FD L++ G
Sbjct: 254 VTVKFVDAEGEKSQAFDKLIVAVG 277
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 31.2 bits (70), Expect = 0.38
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 203 DALLLCTGAT-----WPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNV 257
AL++ G T R L GR +LE K+ S K +
Sbjct: 182 RALVVSPGGTPRIPQVFRALKGDGRVFH----HSQYLEHMAKQP-------CSSGKPMKI 230
Query: 258 IVIGGGDTGCDCIATSLRQ 276
+IGGG + +
Sbjct: 231 AIIGGGQSAAEAFIDLNDS 249
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 30.9 bits (71), Expect = 0.40
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 21/84 (25%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTN------------ 186
G VT+ E + + K++ K L +G+E TN
Sbjct: 193 GTKVTILEGAGEI-------LSGF--EKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG 243
Query: 187 INVGKDIAAKELYEEFDALLLCTG 210
+ V + + + D +L+ G
Sbjct: 244 VTVTYEANGETKTIDADYVLVTVG 267
Score = 27.1 bits (61), Expect = 7.4
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVT 117
G VT+ E + + K++ K L +G+E TN A
Sbjct: 193 GTKVTILEGAGEI-------LSGF--EKQMAAIIKKRLKKKGVEVVTN--------ALAK 235
Query: 118 NHTPQSD 124
+ D
Sbjct: 236 GAEERED 242
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 30.8 bits (69), Expect = 0.51
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 45 ATLSYHISIQHLVGHSVTVFERNDRVGGL 73
A + ++ + GH V + ++ D +GG
Sbjct: 16 AVIGRQLAEK---GHQVHIIDQRDHIGGN 41
Score = 30.0 bits (67), Expect = 0.75
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 139 GHSVTVFERNDRVGGL 154
GH V + ++ D +GG
Sbjct: 26 GHQVHIIDQRDHIGGN 41
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 30.2 bits (69), Expect = 0.69
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 210 GATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCD 268
GA PR L + E ++ K + + V ++GGGD+ D
Sbjct: 122 GAFKPRKLELEN------------AEQYEGKNLHYFVDDLQKFAGRRVAILGGGDSAVD 168
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 30.0 bits (67), Expect = 0.82
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 58 GHSVTVFERNDRVGGL 73
V V E+ + +GG
Sbjct: 24 NKKVLVIEKRNHIGGN 39
Score = 30.0 bits (67), Expect = 0.82
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 139 GHSVTVFERNDRVGGL 154
V V E+ + +GG
Sbjct: 24 NKKVLVIEKRNHIGGN 39
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 30.2 bits (69), Expect = 0.86
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKE- 197
G V V E DR+ +PTM EV + ++ +G+ +T + V + +
Sbjct: 190 GAEVIVLEYMDRI-------LPTM--DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKG 240
Query: 198 ---LYE-----EFDALLLCTG 210
E E D +L+ G
Sbjct: 241 ARVELEGGEVLEADRVLVAVG 261
Score = 27.5 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G V V E DR+ +PTM EV + ++ +G+ +T + V
Sbjct: 190 GAEVIVLEYMDRI-------LPTM--DLEVSRAAERVFKKQGLTIRTGVRVTA 233
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme,
hydrogen peroxide, iron, metal-binding, mitochondrion;
HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A*
1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A*
2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A*
3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ...
Length = 294
Score = 29.3 bits (66), Expect = 1.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 108 VGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153
V IA K+ + P++V + H+ ++++D GG
Sbjct: 22 VYNAIALKLR--EDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGG 65
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 29.0 bits (66), Expect = 1.7
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 23/86 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV------GKD 192
G VT+ E + +P E + L EGI +T
Sbjct: 192 GAEVTLIEYMPEI-------LPQG--DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDG 242
Query: 193 I--------AAKELYEEFDALLLCTG 210
+ + D +L+ G
Sbjct: 243 LHVRLEPAEGGEGEEVVVDKVLVAVG 268
Score = 26.7 bits (60), Expect = 10.0
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 17/68 (25%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVT 117
G VT+ E + +P E + L EGI +T K
Sbjct: 192 GAEVTLIEYMPEI-------LPQG--DPETAALLRRALEKEGIRVRTK--------TKAV 234
Query: 118 NHTPQSDN 125
+ + D
Sbjct: 235 GYEKKKDG 242
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 28.6 bits (63), Expect = 2.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 58 GHSVTVFERNDRVGGL 73
G V + +R +GG
Sbjct: 52 GQRVLIVDRRPHIGGN 67
Score = 28.6 bits (63), Expect = 2.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 139 GHSVTVFERNDRVGGL 154
G V + +R +GG
Sbjct: 52 GQRVLIVDRRPHIGGN 67
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 28.8 bits (65), Expect = 2.2
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 24/112 (21%)
Query: 160 PTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTG--ATWPRDL 217
P + L++ V K + F+T N G ++ A+L+ G A PR L
Sbjct: 89 PDVVLNETVT----KYTKLDDGTFETRTNTGNVYRSR-------AVLIAAGLGAFEPRKL 137
Query: 218 PIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
P G ++ + S K K V+++GGGD+ D
Sbjct: 138 PQLGN-----------IDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDW 178
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 28.6 bits (65), Expect = 2.2
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 23/86 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G VTV E + +PTM E+ ++ + L +G++FK V
Sbjct: 200 GSEVTVVEFASEI-------VPTM--DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG 250
Query: 192 -------DIAAKELYEEFDALLLCTG 210
++ E D +L+ G
Sbjct: 251 VKLTVEPSAGGEQTIIEADVVLVSAG 276
Score = 26.7 bits (60), Expect = 8.5
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G VTV E + +PTM E+ ++ + L +G++FK V
Sbjct: 200 GSEVTVVEFASEI-------VPTM--DAEIRKQFQRSLEKQGMKFKLKTKVVG 243
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 28.8 bits (64), Expect = 2.3
Identities = 26/229 (11%), Positives = 50/229 (21%), Gaps = 35/229 (15%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVV----------QRRVKLLAAE-GIEFKTNI 106
G + E DR+GG + + Q V + +
Sbjct: 62 GFKTLLLEARDRIGG----RSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSP 117
Query: 107 NVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSK 166
+ T ++ ++ F D G P
Sbjct: 118 SFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYV 177
Query: 167 EVVQRRVKLLAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSG 226
++ ++ +E I+ + +++ E +LLC+G T
Sbjct: 178 PEFRKYDEMSYSERID-----QIRDELSLNERSSLEAFILLCSGGTLEN----------- 221
Query: 227 IYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLR 275
SF E M + G
Sbjct: 222 ----SSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAA 266
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 28.3 bits (64), Expect = 2.7
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 25/88 (28%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTN------------ 186
G VTV E ++ +M EV + K L +G++FK +
Sbjct: 206 GSKVTVVEFQPQI-------GASM--DGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDK 256
Query: 187 ----INVGKDIAAKELYEEFDALLLCTG 210
I V K+ E + LL+ G
Sbjct: 257 NVVEIVVEDTKTNKQENLEAEVLLVAVG 284
Score = 27.1 bits (61), Expect = 6.6
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 17/70 (24%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVT 117
G VTV E ++ +M EV + K L +G++FK + KV
Sbjct: 206 GSKVTVVEFQPQI-------GASM--DGEVAKATQKFLKKQGLDFKLS--------TKVI 248
Query: 118 NHTPQSDNQT 127
+ D
Sbjct: 249 SAKRNDDKNV 258
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 28.4 bits (62), Expect = 2.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G VT+ E DRVGG
Sbjct: 301 GMDVTLLEARDRVGG 315
Score = 28.4 bits (62), Expect = 2.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G VT+ E DRVGG
Sbjct: 301 GMDVTLLEARDRVGG 315
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 51 ISIQHLVGHSVTVFERNDRVGG 72
+ H +G + F++ D GG
Sbjct: 25 HKLHHELGLTTVGFDKADGPGG 46
Score = 27.9 bits (63), Expect = 4.2
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 139 GHSVTVFERNDRVGG 153
G + F++ D GG
Sbjct: 32 GLTTVGFDKADGPGG 46
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 27.9 bits (63), Expect = 3.7
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 21/84 (25%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G VT+ E R +P +V + K G+ T V
Sbjct: 194 GVDVTIVEFLPRA-------LPNE--DADVSKEIEKQFKKLGVTILTATKVESIADGGSQ 244
Query: 192 -----DIAAKELYEEFDALLLCTG 210
+ + +L G
Sbjct: 245 VTVTVTKDGVAQELKAEKVLQAIG 268
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 28.1 bits (61), Expect = 3.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 238 QKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ + + + +++VIG G G C A LRQ
Sbjct: 20 RAGSVWAHVGQHFTEEAFDIVVIGAGRMGAAC-AFYLRQ 57
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 27.9 bits (61), Expect = 3.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
+ ++E ND GGL +
Sbjct: 33 YKNWHLYECNDTPGGLSR 50
Score = 27.9 bits (61), Expect = 3.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
+ ++E ND GGL +
Sbjct: 33 YKNWHLYECNDTPGGLSR 50
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 27.9 bits (63), Expect = 3.8
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 23/86 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV------GKD 192
G VTV E D + + M EV ++ ++L +GI+FK V G
Sbjct: 221 GAKVTVVEFLDTI-------LGGM--DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDG 271
Query: 193 I--------AAKELYEEFDALLLCTG 210
+ + + +L+ TG
Sbjct: 272 AKVTFEPVKGGEATTLDAEVVLIATG 297
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 27.9 bits (63), Expect = 3.9
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 23/85 (27%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G V VF R+ V +E+ + K E F V
Sbjct: 197 GVIVKVFGRSGSVA-------NLQ--DEEMKRYAEKTFNEEFY-FDAKARVISTIEKEDA 246
Query: 192 ------DIAAKELYEEFDALLLCTG 210
D + ++ E F +L TG
Sbjct: 247 VEVIYFDKSGQKTTESFQYVLAATG 271
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.9 bits (63), Expect = 3.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 58 GHSVTVFERNDRVGG 72
G SV V E VGG
Sbjct: 39 GRSVHVIETAGDVGG 53
Score = 27.9 bits (63), Expect = 3.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 139 GHSVTVFERNDRVGG 153
G SV V E VGG
Sbjct: 39 GRSVHVIETAGDVGG 53
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 27.8 bits (61), Expect = 4.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 57 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEV---VQRRVKLLAAEGIEFKTNINVGKDI 112
VG V + ERN V LL G+ E+ +Q R++L+ A + T+I +
Sbjct: 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167
Score = 27.8 bits (61), Expect = 4.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 138 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEV---VQRRVKLLAAEGIEFKTNINVGKDI 193
VG V + ERN V LL G+ E+ +Q R++L+ A + T+I +
Sbjct: 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 27.9 bits (63), Expect = 4.5
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 22/83 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINV------GKD 192
G VTV D V +P + + A G+ N G
Sbjct: 205 GVPVTVVASQDHV-------LPYE--DADAALVLEESFAERGVRLFKNARAASVTRTGAG 255
Query: 193 I-----AAKELYEEFDALLLCTG 210
+ + + E L+ G
Sbjct: 256 VLVTMTDGRTV--EGSHALMTIG 276
Score = 27.1 bits (61), Expect = 7.6
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 9/53 (16%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK 110
G VTV D V +P + + A G+ N
Sbjct: 205 GVPVTVVASQDHV-------LPYE--DADAALVLEESFAERGVRLFKNARAAS 248
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 27.9 bits (63), Expect = 4.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 58 GHSVTVFERNDRVGG 72
G +V FE VGG
Sbjct: 44 GLTVRAFEAASGVGG 58
Score = 27.9 bits (63), Expect = 4.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 139 GHSVTVFERNDRVGG 153
G +V FE VGG
Sbjct: 44 GLTVRAFEAASGVGG 58
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 27.6 bits (61), Expect = 5.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 10/34 (29%)
Query: 118 NHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRV 151
N+ S N T CP I +ND++
Sbjct: 190 NYDFLSPNYTGQCPSGIR----------AQNDQL 213
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 27.5 bits (61), Expect = 5.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 250 ISAKDKNVIVIGGGDTG 266
K+V+++GGGD G
Sbjct: 185 EDYTGKDVLILGGGDGG 201
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 27.6 bits (61), Expect = 5.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 59 HSVTVFERNDRVGG 72
+ + E D +GG
Sbjct: 29 TDLLILEATDHIGG 42
Score = 27.6 bits (61), Expect = 5.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 140 HSVTVFERNDRVGG 153
+ + E D +GG
Sbjct: 29 TDLLILEATDHIGG 42
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 27.6 bits (62), Expect = 5.6
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 58 GHSVTVFERNDRVGG 72
G V E + VGG
Sbjct: 32 GMKVLGIEAGEDVGG 46
Score = 27.6 bits (62), Expect = 5.6
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 139 GHSVTVFERNDRVGG 153
G V E + VGG
Sbjct: 32 GMKVLGIEAGEDVGG 46
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 27.1 bits (61), Expect = 6.5
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 23/87 (26%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK------- 191
G VT E VGG + + E+ + ++L +G +FK N V
Sbjct: 201 GADVTAVEFLGHVGG--------VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDG 252
Query: 192 --------DIAAKELYEEFDALLLCTG 210
K D LL+C G
Sbjct: 253 KIDVSIEAASGGKAEVITCDVLLVCIG 279
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA
damage, DNA repair, DNA- binding, DNA binding protein;
2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X*
Length = 116
Score = 26.1 bits (58), Expect = 6.6
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 77 GIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKH 129
G + + QR+ L EG+E + P S + H
Sbjct: 64 GTISKRDISAGEQRQKDRLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH 116
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM
GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB:
2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*
Length = 600
Score = 27.1 bits (59), Expect = 7.8
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 242 MGNENVSPISAKD-KNVIVIGGG 263
+G +N P S+ + +N + G G
Sbjct: 136 VGFDNGDPASSGNLENCHIYGHG 158
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 27.1 bits (59), Expect = 7.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 59 HSVTVFERNDRVGG 72
V E DRVGG
Sbjct: 33 QDCLVLEARDRVGG 46
Score = 27.1 bits (59), Expect = 7.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 140 HSVTVFERNDRVGG 153
V E DRVGG
Sbjct: 33 QDCLVLEARDRVGG 46
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 27.1 bits (59), Expect = 8.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G VT+ E DRVGG
Sbjct: 130 GMDVTLLEARDRVGG 144
Score = 27.1 bits (59), Expect = 8.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G VT+ E DRVGG
Sbjct: 130 GMDVTLLEARDRVGG 144
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 26.7 bits (60), Expect = 9.6
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 58 GHSVTVFERNDRVG 71
G V V + G
Sbjct: 50 GRRVLVIDHARAPG 63
Score = 26.7 bits (60), Expect = 9.6
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 139 GHSVTVFERNDRVG 152
G V V + G
Sbjct: 50 GRRVLVIDHARAPG 63
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 26.7 bits (60), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 240 KQMGNENVS-PISAKDKNVIVIGGG 263
+G EN+ +A +VIVIGGG
Sbjct: 11 VDLGTENLYFQSNAMHYDVIVIGGG 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,192,979
Number of extensions: 247822
Number of successful extensions: 1250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 221
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)