RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12810
(276 letters)
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 82.7 bits (203), Expect = 1e-19
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Query: 133 LIVNIVGHSVTVFERNDRVGGLLQYGIPTM-KLSKEVVQRRVKLLAAEGIEFKTNINVGK 191
L+ + V ++E+ GL+++G+ K V+ + ++ F N+ VG+
Sbjct: 20 LLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR 79
Query: 192 DIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPIS 251
D+ +EL + + A++L GA P + +E S
Sbjct: 80 DVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVP-GLYCSGWV 138
Query: 252 AKDKNVIVIGGGDTGCDCIATSLR 275
+ ++ L+
Sbjct: 139 KRGPTGVITTTMTDSFLTGQILLQ 162
Score = 53.0 bits (126), Expect = 6e-09
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTM-KLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAA 114
V ++E+ GL+++G+ K V+ + ++ F N+ VG+D+
Sbjct: 26 RAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTV 83
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 65.3 bits (158), Expect = 3e-13
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 215 RDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSL 274
+ L IPG +L G++ A +F+ W N ++P +++G G+ D L
Sbjct: 2 QALDIPGEELPGVFSARAFV-GWYNGLPENRELAPD-LSCDTAVILGQGNVALDVARILL 59
Query: 275 RQ 276
Sbjct: 60 TP 61
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 62.6 bits (151), Expect = 2e-12
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 215 RDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSL 274
R L IPG L G A+ F+ W E VSP +VIG G+ D L
Sbjct: 2 RMLNIPGEDLPGSIAAVDFV-GWYNAHPHFEQVSPD-LSGARAVVIGNGNVALDVARILL 59
Query: 275 RQ 276
Sbjct: 60 TD 61
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 57.5 bits (138), Expect = 6e-11
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 223 QLSGIYFAMSFLE--SWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
Q G Y + FL + K SP+ + VIV+G GDT DC ++LR
Sbjct: 12 QDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRC 67
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 56.7 bits (136), Expect = 1e-10
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 38/140 (27%)
Query: 140 HSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKE 197
H VT+F+ + +GG IP + E ++ +++ G+ K N V D
Sbjct: 67 HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQ---- 122
Query: 198 LYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNV 257
+ FD +L +G R L P + K V
Sbjct: 123 -LQAFDETILASGI-PNRALAQP-----------------------------LIDSGKTV 151
Query: 258 IVIGGGDTGCDCIA-TSLRQ 276
+IGG D + A ++ Q
Sbjct: 152 HLIGGCDVAMELDARRAIAQ 171
Score = 39.8 bits (92), Expect = 1e-04
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 59 HSVTVFERNDRVGGLLQYG--IPTMKLSKEVVQRRVKLLAAEGIEFKTNINV 108
H VT+F+ + +GG IP + E ++ +++ G+ K N V
Sbjct: 67 HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 118
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 54.9 bits (131), Expect = 2e-09
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 19/147 (12%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKTNINVG------- 190
V + E++ GG G S +V++ L E G+ +
Sbjct: 57 NVQVAIIEQSVSPGGGAWLGG--QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAAL 114
Query: 191 --KDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVS 248
I +K L L DL + G ++ G+ + + Q + +
Sbjct: 115 FTSTIMSKLLARPNVKLFNAVA---AEDLIVKGNRVGGVVTNWALVAQNHHTQ-SCMDPN 170
Query: 249 PISAKDKNVIVIGGGDTGCDCIATSLR 275
+ AK ++V G G R
Sbjct: 171 VMEAK---IVVSSCGHDGPFGATGVKR 194
Score = 39.9 bits (92), Expect = 2e-04
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAE-GIEFKTNINVGKDIAA 114
V + E++ GG G S +V++ L E G+ + A
Sbjct: 57 NVQVAIIEQSVSPGGGAWLGG--QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112
Score = 25.6 bits (55), Expect = 6.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 248 SPISAKDKNVIVIGGGDTGCDC 269
I+ + +V+V+G G G
Sbjct: 27 DMITYAETDVVVVGAGSAGLSA 48
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 53.4 bits (127), Expect = 2e-09
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 214 PRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATS 273
PR PI G + + L K +G V +IG G G D
Sbjct: 2 PRTPPIDGIDHPKVLSYLDVLR--DKAPVG-----------NKVAIIGCGGIGFDTAMYL 48
Query: 274 LRQ 276
+
Sbjct: 49 SQP 51
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 50.7 bits (120), Expect = 5e-08
Identities = 16/139 (11%), Positives = 30/139 (21%), Gaps = 21/139 (15%)
Query: 139 GHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRV-KLLAAEGIEFKTNINVGKDIAAKE 197
V + E + GG G S V+++ L I ++ +
Sbjct: 75 DLKVCIIESSVAPGGGSWLG--GQLFSAMVMRKPAHLFLQELEIPYEDEGD--------- 123
Query: 198 LYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNV 257
Y L + L +P +L + V
Sbjct: 124 -YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVT--------RPPTEKGEVTVAGV 174
Query: 258 IVIGGGDTGCDCIATSLRQ 276
+ T +
Sbjct: 175 VTNWTLVTQAHGTQCCMDP 193
Score = 37.2 bits (85), Expect = 0.001
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 54 QHLVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRV-KLLAAEGIEFKTNINVGKDI 112
++ V + E + GG G S V+++ L I ++ +
Sbjct: 71 KNRPDLKVCIIESSVAPGGGSWLG--GQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVK 128
Query: 113 AAKV 116
A +
Sbjct: 129 HAAL 132
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate
synthase, C-terminal domain {Azospirillum brasilense
[TaxId: 192]}
Length = 270
Score = 46.9 bits (111), Expect = 9e-07
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 11 LDNTLIQECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQH 55
LD ++ + P+ + L Y N RA LS ++ +
Sbjct: 9 LDARIVADARPLFEEGEK-MQLAYNARNTQRAIGTRLSSMVTRKF 52
>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 239
Score = 44.3 bits (103), Expect = 5e-06
Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 2/168 (1%)
Query: 58 GHSVTVFERNDRVGGLLQYGIPTMKLSK-EVVQRRVKLLAAEGIEFKTNINVG-KDIAAK 115
+V + E GL++ G+ + ++ K F N+ VG +
Sbjct: 32 DMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGE 91
Query: 116 VTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKL 175
++ + VGG + + +
Sbjct: 92 LSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVI 151
Query: 176 LAAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQ 223
+ T + K++ + E + L +
Sbjct: 152 GTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPK 199
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate
synthase, C-terminal domain {Synechocystis sp. [TaxId:
1143]}
Length = 268
Score = 43.5 bits (102), Expect = 1e-05
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 5 HQLEKRLDNTLIQ--ECEPVLSGKVPRIDLEYTINNECRAFTATLSYHISIQH 55
H LD+ ++ + + ++ + Y + N R LS I+ ++
Sbjct: 2 HSNGPVLDDDILADPDIQEAINHQTT-ATKTYRLVNTDRTVGTRLSGAIAKKY 53
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 39.4 bits (90), Expect = 2e-04
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 139 GHS-VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKE 197
G+S +T+FE+ + VGGL IP +L +VV ++L+ G++ ++ ++
Sbjct: 27 GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLN 86
Query: 198 LYEEFD--ALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDK 255
+E A + G P LS I F L + M
Sbjct: 87 TLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEP----WVFA 142
Query: 256 NVIVIGGGDTGCDCIATSLRQ 276
++G +T + + +
Sbjct: 143 GGDIVGMANTTVESVNDGKQA 163
Score = 33.2 bits (74), Expect = 0.022
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 252 AKDKNVIVIGGGDTGCDCIATSLRQ 276
A + ++G G C + R
Sbjct: 2 AYSAKIALLGAGPASISCASFLARL 26
Score = 25.1 bits (53), Expect = 9.7
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Query: 58 GHS-VTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKV 116
G+S +T+FE+ + VGGL IP +L +VV ++L+ G++ ++ ++
Sbjct: 27 GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLN 86
Query: 117 TNHTPQSD-NQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVK 174
T P ++ + L + TM+ S+ V
Sbjct: 87 TLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGD 145
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 36.0 bits (81), Expect = 0.002
Identities = 18/142 (12%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 140 HSVTVFERNDRVGGLL-----QYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIA 194
++V + + +++GG L G+ ++ + ++ L + E + + A
Sbjct: 73 YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTA 132
Query: 195 AKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKD 254
L D +++ TGA+ +L + + +G +
Sbjct: 133 DDVLQYGADKVIIATGASECT----LWNELKARESEWAENDIKGIYLIG--------DAE 180
Query: 255 KNVIVIGGGDTGCDCIATSLRQ 276
++ TG A + +
Sbjct: 181 APRLIADATFTGHRV-AREIEE 201
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 35.5 bits (80), Expect = 0.005
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 58 GHSVTVFERNDRVGGLLQ 75
G + E + R+GG +
Sbjct: 23 GTDAVLLESSARLGGAVG 40
Score = 35.5 bits (80), Expect = 0.005
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 139 GHSVTVFERNDRVGGLLQ 156
G + E + R+GG +
Sbjct: 23 GTDAVLLESSARLGGAVG 40
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 449
Score = 35.3 bits (79), Expect = 0.006
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G VT+ E DRVGG
Sbjct: 28 GMDVTLLEARDRVGG 42
Score = 35.3 bits (79), Expect = 0.006
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G VT+ E DRVGG
Sbjct: 28 GMDVTLLEARDRVGG 42
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 35.1 bits (79), Expect = 0.008
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G +V V E DRVGG
Sbjct: 22 GLNVVVLEARDRVGG 36
Score = 35.1 bits (79), Expect = 0.008
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G +V V E DRVGG
Sbjct: 22 GLNVVVLEARDRVGG 36
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 34.8 bits (78), Expect = 0.008
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 58 GHSVTVFERNDRVGGLLQ-YGIPTMKL 83
G +VTVFE + GG L+ +
Sbjct: 24 GLNVTVFEAEGKAGGKLRSVSQDGLIW 50
Score = 34.8 bits (78), Expect = 0.008
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 139 GHSVTVFERNDRVGGLLQ-YGIPTMKL 164
G +VTVFE + GG L+ +
Sbjct: 24 GLNVTVFEAEGKAGGKLRSVSQDGLIW 50
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 33.6 bits (75), Expect = 0.022
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 58 GHSVTVFERNDRVGG 72
GH VTV E ++R GG
Sbjct: 53 GHQVTVLEASERPGG 67
Score = 33.6 bits (75), Expect = 0.022
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 139 GHSVTVFERNDRVGG 153
GH VTV E ++R GG
Sbjct: 53 GHQVTVLEASERPGG 67
Score = 25.9 bits (55), Expect = 6.4
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 249 PISAKDKNVIVIGGGDTGCDCIATSLRQ 276
++ K+V+++G G G A L
Sbjct: 25 KATSNPKHVVIVGAGMAGLSA-AYVLAG 51
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 32.9 bits (73), Expect = 0.039
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 58 GHSVTVFERNDRVGG 72
G V +RN GG
Sbjct: 29 GKKVLHMDRNPYYGG 43
Score = 32.9 bits (73), Expect = 0.039
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 139 GHSVTVFERNDRVGG 153
G V +RN GG
Sbjct: 29 GKKVLHMDRNPYYGG 43
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 31.8 bits (70), Expect = 0.070
Identities = 4/26 (15%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 59 HSVTVFERNDRVGG-LLQYGIPTMKL 83
+ + E D +GG + + + +
Sbjct: 25 TDLLILEATDHIGGRMHKTNFAGINV 50
Score = 31.8 bits (70), Expect = 0.070
Identities = 4/26 (15%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 140 HSVTVFERNDRVGG-LLQYGIPTMKL 164
+ + E D +GG + + + +
Sbjct: 25 TDLLILEATDHIGGRMHKTNFAGINV 50
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 291
Score = 31.6 bits (71), Expect = 0.075
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 108 VGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153
V IA K+ + P++V + H ++++D GG
Sbjct: 19 VYNAIALKLREDDEYDNY--IGYGPVLVRLAWHISGTWDKHDNTGG 62
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 297
Score = 31.7 bits (70), Expect = 0.081
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 58 GHSVTVFERNDRVGG 72
G V ++ D GG
Sbjct: 28 GKKVLHIDKQDHYGG 42
Score = 31.7 bits (70), Expect = 0.081
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 139 GHSVTVFERNDRVGG 153
G V ++ D GG
Sbjct: 28 GKKVLHIDKQDHYGG 42
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 31.5 bits (70), Expect = 0.093
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 54 QHLVGHSVTVFERNDRVGGLLQY 76
VT+FER GG+ Y
Sbjct: 25 AEKAFDQVTLFERRGSPGGVWNY 47
Score = 31.5 bits (70), Expect = 0.10
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 139 GHSVTVFERNDRVGGLLQY 157
VT+FER GG+ Y
Sbjct: 29 FDQVTLFERRGSPGGVWNY 47
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 31.0 bits (69), Expect = 0.11
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 252 AKDKNVIVIGGGDTGCDCIATSLRQ 276
A + +V+G G G + +
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAAQL 25
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 31.3 bits (70), Expect = 0.11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 58 GHSVTVFERNDRVGGLLQY 76
G SV V E VGG+ +
Sbjct: 30 GRSVHVIETAGDVGGVWYW 48
Score = 31.3 bits (70), Expect = 0.11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 139 GHSVTVFERNDRVGGLLQY 157
G SV V E VGG+ +
Sbjct: 30 GRSVHVIETAGDVGGVWYW 48
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 31.3 bits (70), Expect = 0.12
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 58 GHSVTVFERNDRVGGLL 74
GH V + ++ D +GG
Sbjct: 25 GHQVHIIDQRDHIGGNS 41
Score = 31.3 bits (70), Expect = 0.12
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 139 GHSVTVFERNDRVGGLL 155
GH V + ++ D +GG
Sbjct: 25 GHQVHIIDQRDHIGGNS 41
Score = 25.5 bits (55), Expect = 8.1
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 253 KDKNVIVIGGGDTGCDCIATSLRQ 276
K K ++++G G +G I L +
Sbjct: 1 KSKKILIVGAGFSGA-VIGRQLAE 23
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 30.2 bits (67), Expect = 0.16
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 251 SAKDKNVIVIGGGDTGCDC 269
+ K ++++G G G
Sbjct: 2 TTKHSKLLILGSGPAGYTA 20
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 30.7 bits (68), Expect = 0.17
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 246 NVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
NV ++ + I IGGG G A
Sbjct: 34 NVDENDPREYDAIFIGGGAAGRFGSAYLRAM 64
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 30.5 bits (67), Expect = 0.17
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 234 LESWQKKQM--GNENVSPISAKDKNVIVIGGGDTGCDCI 270
L+ + GN P+ + V VIG G +G
Sbjct: 10 LKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVS 48
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 30.2 bits (67), Expect = 0.22
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 58 GHSVTVFERNDRVGGL 73
V V E+ + +GG
Sbjct: 24 NKKVLVIEKRNHIGGN 39
Score = 30.2 bits (67), Expect = 0.22
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 139 GHSVTVFERNDRVGGL 154
V V E+ + +GG
Sbjct: 24 NKKVLVIEKRNHIGGN 39
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 29.9 bits (66), Expect = 0.27
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 250 ISAKDKNVIVIGGGDTGCDC 269
+ + + ++G G
Sbjct: 1 LETHNTRLCIVGSGPAAHTA 20
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 29.3 bits (64), Expect = 0.39
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 254 DKNVIVIGGGDTGCDCIATSLRQ 276
+ NV+++G G G + A LR
Sbjct: 3 NDNVVIVGTGLAGVEV-AFGLRA 24
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 28.2 bits (61), Expect = 0.85
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 256 NVIVIGGGDTGCDC 269
+V+++G G G
Sbjct: 3 DVLIVGSGPAGAAA 16
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 28.2 bits (61), Expect = 0.92
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 252 AKDKNVIVIGGGDTGCDCIATSLRQ 276
A V+V+G G LRQ
Sbjct: 1 ALKAPVVVLGAGLASVSF-VAELRQ 24
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein
transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.9 bits (62), Expect = 1.2
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 18/62 (29%)
Query: 33 EYTINNECRAFTA------------TLSYHISIQHL----VGHSVTVFERNDRVGGLLQY 76
T+N T + L HS+ V+ ++ VGG+ Y
Sbjct: 88 RVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGM--Y 145
Query: 77 GI 78
G+
Sbjct: 146 GV 147
Score = 26.0 bits (57), Expect = 4.8
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 139 GHSVTVFERNDRVGGLLQYGI 159
HS+ V+ ++ VGG+ YG+
Sbjct: 129 AHSIEVWREDELVGGM--YGV 147
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 27.5 bits (59), Expect = 1.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 257 VIVIGGGDTGCDCIATSLR 275
VIV+G G + + L
Sbjct: 3 VIVLGSSHGGYEAVEELLN 21
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 81
Score = 26.1 bits (57), Expect = 1.7
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 89 QRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERN 148
+++V + ++ + I G D+A + N +P++ P + + H V +
Sbjct: 5 EKKVYEWLTKNVKRGSVITYG-DLAKAL-NTSPRAVGGAMKRNPYPIVVPCHRVV---AH 59
Query: 149 DRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGI 181
D +G GI K LL EG+
Sbjct: 60 DGIGYY-SSGIEEKK----------FLLEIEGV 81
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus
sp. pcc 7942 [TaxId: 1140]}
Length = 406
Score = 27.4 bits (60), Expect = 1.9
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 101 EFKT-NINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGG 153
E + + + +D+ A +T+ H L++ + H+ + D GG
Sbjct: 34 EVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGG 87
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 27.2 bits (59), Expect = 2.3
Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 83 LSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSV 142
LS+ + L + + +I+ + T ++ N+ +
Sbjct: 279 LSRMMRAYVDPSLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEE 338
Query: 143 TVFERNDRVGG----------LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKD 192
+ + D G L++ G+ K + ++VQR F + ++
Sbjct: 339 RMKKNIDLTKGLVFSQRVLLKLIEKGLT-RKEAYDIVQRNALKTWNSEKHFLEYLLEDEE 397
Query: 193 IAAKELYEEFDALL 206
+ EE + L
Sbjct: 398 VKKLVTKEELEELF 411
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 406
Score = 26.9 bits (59), Expect = 2.9
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 108 VGKDIAAKVTNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGL 154
V +D+ A +T H L + + HS + D GG
Sbjct: 46 VKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 92
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 25.8 bits (56), Expect = 2.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 250 ISAKDKNVIVIGGGDTGCDCIATSLR 275
+D++ +++GGGD L
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLE 33
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 26.4 bits (57), Expect = 3.3
Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 22/200 (11%)
Query: 58 GHSVTVFERNDRVGG-LLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGKDIAAKV 116
G SVTVF+ ++G +L G + V L A
Sbjct: 27 GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFV---------KSALAR 77
Query: 117 TNHTPQSDNQTKHCPPLIVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLL 176
+ + +G V L K + ++
Sbjct: 78 YTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD------KYGAKILLRSE 131
Query: 177 AAEGIEFKTNINVGKDIAAKELYEEFDALLLCTGATWPRDLPIPGRQLSGIYFAMSFLES 236
++ + + V + + L++ TG +P G G A F
Sbjct: 132 VSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGG---LSMPGLGATPFGYQIAEQFGIP 188
Query: 237 ---WQKKQMGNENVSPISAK 253
+ MG + IS+K
Sbjct: 189 VIPPRAVTMGGVDTKVISSK 208
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 26.2 bits (56), Expect = 3.5
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 257 VIVIGGGDTGCDCIATSLRQ 276
V+++G G G + A L Q
Sbjct: 3 VVIVGNGPGGFEL-AKQLSQ 21
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 26.3 bits (56), Expect = 3.8
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 255 KNVIVIGGGDTGCDCIATSLRQ 276
+ V+V+GGG G A ++
Sbjct: 3 RKVVVVGGGTGGATA-AKYIKL 23
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 121
Score = 25.7 bits (55), Expect = 3.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 253 KDKNVIVIGGGDTGCDCI 270
V+V+GG T +
Sbjct: 21 PGSTVVVVGGSKTAVEYG 38
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 25.6 bits (55), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 219 IPGRQLSGIYFAMSFLESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDC 269
IPG+ L IY + + KQ + + NV+VIG G G +
Sbjct: 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDP------EVNNVVVIGSGYIGIEA 45
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 26.2 bits (56), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 58 GHSVTVFERNDRVGGLLQYGI 78
G V V+ER+ + GI
Sbjct: 27 GVDVDVYERSPQPLSGFGTGI 47
Score = 26.2 bits (56), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 139 GHSVTVFERNDRVGGLLQYGI 159
G V V+ER+ + GI
Sbjct: 27 GVDVDVYERSPQPLSGFGTGI 47
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 26.4 bits (57), Expect = 4.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 246 NVSPISAKDKNVIVIGGGDTGC 267
+ +S + + I+ GGG TG
Sbjct: 9 DPKDVSGRTVDYIIAGGGLTGL 30
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 26.2 bits (56), Expect = 4.9
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 58 GHSVTVFERNDRVGG 72
G +V + ++ +++G
Sbjct: 25 GANVLLLDKGNKLGR 39
Score = 26.2 bits (56), Expect = 4.9
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 139 GHSVTVFERNDRVGG 153
G +V + ++ +++G
Sbjct: 25 GANVLLLDKGNKLGR 39
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 26.2 bits (56), Expect = 5.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 250 ISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ K V+V+G G G A L +
Sbjct: 2 MMHSQKRVVVLGSGVIGL-SSALILAR 27
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 122
Score = 25.0 bits (54), Expect = 6.1
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 28/95 (29%)
Query: 134 IVNIVGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQRRVKLLAAEGIEFKTNINVGK-- 191
+ +G VTV R+ + G +++ + + + GI+F K
Sbjct: 38 FLAGIGLDVTVMVRSILLRGF----------DQDMANKIGEHMEEHGIKFIRQFVPTKIE 87
Query: 192 ----------------DIAAKELYEEFDALLLCTG 210
+ + + +EF+ +LL G
Sbjct: 88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 25.1 bits (54), Expect = 6.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 253 KDKNVIVIGGGDTGCDCIATSLR 275
KDK +++IGGG+ G + +
Sbjct: 12 KDKRILLIGGGEVGLTRLYKLMP 34
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 25.7 bits (55), Expect = 7.5
Identities = 6/42 (14%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 235 ESWQKKQMGNENVSPISAKDKNVIVIGGGDTGCDCIATSLRQ 276
+ W + ++ + ++ ++ V+V+G G G + + ++
Sbjct: 1 DGWDQDKI-QKAIAAGPSETTQVLVVGAGSAGF-NASLAAKK 40
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 25.6 bits (55), Expect = 7.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 252 AKDKNVIVIGGGDTGCDC 269
+ + +V++IGGG G
Sbjct: 1 SDENDVVIIGGGPGGYVA 18
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 107
Score = 24.6 bits (53), Expect = 8.2
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 234 LESWQKKQMGNENVS-----PISAKDKNVIVIGGGDTGCD 268
L+ + K G+ S P ++V+V+GG + D
Sbjct: 7 LDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAND 46
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 25.0 bits (54), Expect = 9.8
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 57 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQ---RRVKLLAAEGIEFKTNINVGKDI 112
VG V + ERN V LL G+ E+ R++L+ A + T+I +
Sbjct: 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167
Score = 25.0 bits (54), Expect = 9.8
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 138 VGHSVTVFERNDRVGGLLQYGIPTMKLSKEVVQ---RRVKLLAAEGIEFKTNINVGKDI 193
VG V + ERN V LL G+ E+ R++L+ A + T+I +
Sbjct: 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,010,692
Number of extensions: 45601
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 89
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)