BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12811
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
            204508 / S288c) GN=GLT1 PE=1 SV=2
          Length = 2145

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            GA S+++FE+LP+P  +R++DNPWPQ+PR+++VDYGH EVK  +  DPRE+CI    F
Sbjct: 1944 GAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDPREYCILSKEF 2001


>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1
          Length = 2194

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  ++V+ E+LPQP P R+  NPWPQ+PRI +VDYGH+E + K   DPR + +   RF  
Sbjct: 1990 GCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETKFGKDPRTYEVLTKRFVG 2049

Query: 65   EE 66
            +E
Sbjct: 2050 DE 2051


>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp.
            japonica GN=Os05g0555600 PE=2 SV=2
          Length = 2188

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  ++V+ E+LP+P  KR+ DNPWPQ+PRI +VDYGH+E   K   DPR + +   RF  
Sbjct: 1990 GCTNLVNLELLPEPPRKRAPDNPWPQWPRIFRVDYGHQEATSKFGKDPRSYKVLTKRFIG 2049

Query: 65   EE 66
            +E
Sbjct: 2050 DE 2051


>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp.
            japonica GN=Os01g0681900 PE=2 SV=1
          Length = 2167

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            G  SIV+ E+L +P  KR+ DNPWPQ+PRI +VDYGH+E   K  +DPR + +   RF  
Sbjct: 1972 GCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEASSKFGNDPRTYEVLTKRFIG 2031

Query: 65   EE 66
            +E
Sbjct: 2032 DE 2033


>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana
            GN=GLT1 PE=1 SV=2
          Length = 2208

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRF 62
            G  +IV+ E+LPQP   R+  NPWPQ+PR+ ++DYGH+E   K   DPR + +   RF
Sbjct: 2011 GCTNIVNLELLPQPPSTRAPGNPWPQWPRVFRIDYGHQEATTKFGKDPRTYEVLTKRF 2068


>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
            (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
          Length = 2111

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 5    GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPF 64
            GA+S+ + E+LP P  +R+ DNPWPQ+PR+ +VDYGH EV+  +  D RE+ I    F  
Sbjct: 1920 GAKSVRNLELLPIPPRERAFDNPWPQYPRVFRVDYGHAEVQAHYGQDFREYSILTKSFEK 1979

Query: 65   EE 66
            +E
Sbjct: 1980 DE 1981


>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain
           168) GN=gltB PE=2 SV=2
          Length = 493

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 6   AQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCI 57
           A+S+  F   P+  P R+ DN WP+ P +  ++Y +EE + K   DPRE+ I
Sbjct: 316 AKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEEAEAKFGRDPREYSI 367


>sp|P96219|GLTD_MYCTU Glutamate synthase [NADPH] small chain OS=Mycobacterium
           tuberculosis GN=gltD PE=3 SV=1
          Length = 488

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEE 43
           GA ++  FEI+P+P   R++  PWP +P + +V   HEE
Sbjct: 310 GAIAVHQFEIMPRPPDARAESTPWPTYPLMYRVSAAHEE 348


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.142    0.487 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,749,972
Number of Sequences: 539616
Number of extensions: 1087874
Number of successful extensions: 1639
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)