Query psy12811
Match_columns 74
No_of_seqs 108 out of 513
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:22:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0399|consensus 99.9 3.7E-26 8E-31 193.5 5.3 70 1-70 1943-2012(2142)
2 COG0493 GltD NADPH-dependent g 99.0 1.2E-10 2.5E-15 91.0 2.8 59 1-69 281-339 (457)
3 TIGR01317 GOGAT_sm_gam glutama 98.2 1.6E-06 3.4E-11 67.2 3.6 68 1-68 302-369 (485)
4 PRK12779 putative bifunctional 95.3 0.0071 1.5E-07 51.2 1.1 50 1-67 466-515 (944)
5 PRK12809 putative oxidoreducta 94.6 0.017 3.7E-07 46.4 1.5 52 1-68 470-521 (639)
6 PRK12810 gltD glutamate syntha 94.5 0.024 5.2E-07 43.7 2.0 46 1-46 300-345 (471)
7 PRK12769 putative oxidoreducta 94.0 0.028 6.1E-07 45.1 1.5 52 1-68 487-538 (654)
8 PRK12775 putative trifunctiona 90.2 0.14 3.1E-06 43.7 1.3 52 1-68 590-641 (1006)
9 PRK12778 putative bifunctional 83.5 0.65 1.4E-05 38.0 1.6 50 1-66 589-638 (752)
10 PRK12831 putative oxidoreducta 62.3 4.7 0.0001 31.3 1.5 50 1-67 300-349 (464)
11 TIGR01318 gltD_gamma_fam gluta 49.5 9.9 0.00022 29.5 1.4 17 1-17 301-317 (467)
12 PHA01634 hypothetical protein 44.5 10 0.00022 26.7 0.7 14 5-18 50-63 (156)
13 TIGR01316 gltA glutamate synth 42.4 15 0.00032 28.3 1.3 47 2-65 292-338 (449)
14 PRK11749 dihydropyrimidine deh 34.6 24 0.00051 27.0 1.4 35 2-46 293-327 (457)
15 KOG4389|consensus 30.4 20 0.00044 29.9 0.4 15 21-35 453-467 (601)
16 PF03269 DUF268: Caenorhabditi 29.8 24 0.00052 25.4 0.7 17 1-17 19-35 (177)
17 PF11540 Dynein_IC2: Cytoplasm 27.3 25 0.00055 18.8 0.3 17 2-18 5-21 (33)
18 TIGR03843 conserved hypothetic 26.4 12 0.00026 28.2 -1.4 29 1-30 224-252 (253)
19 PRK10173 glucose-1-phosphatase 22.3 40 0.00086 26.4 0.7 10 24-33 57-66 (413)
No 1
>KOG0399|consensus
Probab=99.92 E-value=3.7e-26 Score=193.48 Aligned_cols=70 Identities=43% Similarity=0.865 Sum_probs=67.5
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCCCc
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSPY 70 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~~~ 70 (74)
++||||+||..||++|+||.+|..+||||+||+||||||+|+|+.+.||+|||+|+|.||+|+||++|-.
T Consensus 1943 svrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v 2012 (2142)
T KOG0399|consen 1943 SVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNV 2012 (2142)
T ss_pred chhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCce
Confidence 4799999999999999999999999999999999999999999999999999999999999999998753
No 2
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.03 E-value=1.2e-10 Score=91.01 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=52.8
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECSP 69 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~~ 69 (74)
|+||||++|+|+. ++..++..+|||+||..++++++|+||.. |.|.+++++|+++++|.
T Consensus 281 ~~r~Ga~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~a~eeg~~------~~~~~~~~~~~~~e~Gr 339 (457)
T COG0493 281 ALRLGAKSVTCFY----REDRDDETNEWPTWAAQLEVRSAGEEGVE------RLPFVQPKAFIGNEGGR 339 (457)
T ss_pred HhhcCCeEEEEec----cccccccCCcccccchhhhhhhhhhcCCc------ccccCCceeEeecCCCc
Confidence 5899999999998 55555688999999999999999999955 99999999999998884
No 3
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.18 E-value=1.6e-06 Score=67.24 Aligned_cols=68 Identities=41% Similarity=0.820 Sum_probs=59.8
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS 68 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~ 68 (74)
|+|+||+.|+.++.+|..+..|..++.||.||..+.+..+++|+.+.+|-+++.|...+++|+|+++|
T Consensus 302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g 369 (485)
T TIGR01317 302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEG 369 (485)
T ss_pred HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCC
Confidence 46899999999999999888887788899999999999999999887888888888888998876544
No 4
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.30 E-value=0.0071 Score=51.22 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=36.8
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEEC 67 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~ 67 (74)
|+|+|| +|+.+... ..++||.++..+. .+++||.+ +.|...+++|+++++
T Consensus 466 a~R~Ga-~Vtlv~rr--------~~~~mpa~~~e~~--~a~eeGV~------~~~~~~p~~i~~d~~ 515 (944)
T PRK12779 466 AKRLGG-NVTIVYRR--------TKSEMPARVEELH--HALEEGIN------LAVLRAPREFIGDDH 515 (944)
T ss_pred HHHcCC-EEEEEEec--------CcccccccHHHHH--HHHHCCCE------EEeCcceEEEEecCC
Confidence 479998 58877543 3368998886544 48899877 788888889887643
No 5
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.63 E-value=0.017 Score=46.41 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=35.8
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS 68 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~ 68 (74)
|+|+||++|+.+.+. ...+||.++..+ ..+++||.+ +.|...+++|.++++|
T Consensus 470 ~~~~Ga~~Vt~v~rr--------~~~~~~~~~~e~--~~a~~eGv~------~~~~~~~~~i~~~~~g 521 (639)
T PRK12809 470 SIRLNAASVTCAYRR--------DEVSMPGSRKEV--VNAREEGVE------FQFNVQPQYIACDEDG 521 (639)
T ss_pred HHHcCCCeEEEeeec--------CcccCCCCHHHH--HHHHHcCCe------EEeccCCEEEEECCCC
Confidence 468999999987543 334577766433 357888876 6777777777765544
No 6
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.48 E-value=0.024 Score=43.68 Aligned_cols=46 Identities=37% Similarity=0.675 Sum_probs=37.7
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhh
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKV 46 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~ 46 (74)
++|+||++|+.++..+.+...+.....||.++..+.+..+.++|.+
T Consensus 300 ~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~ 345 (471)
T PRK12810 300 AIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVE 345 (471)
T ss_pred HHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCe
Confidence 3689999999998888887766667789999988778888888765
No 7
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.99 E-value=0.028 Score=45.12 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=35.3
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS 68 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~ 68 (74)
|+|+||++|+-+.+.. ..+||.++.. +..+++||.+ +.|...+++|+++++|
T Consensus 487 a~r~ga~~Vt~i~~~~--------~~~~~~~~~e--~~~~~~~Gv~------~~~~~~~~~i~~~~~g 538 (654)
T PRK12769 487 ALRHGASNVTCAYRRD--------EANMPGSKKE--VKNAREEGAN------FEFNVQPVALELNEQG 538 (654)
T ss_pred HHHcCCCeEEEeEecC--------CCCCCCCHHH--HHHHHHcCCe------EEeccCcEEEEECCCC
Confidence 4789999999775442 3346766654 4568888876 6777777777655433
No 8
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=90.16 E-value=0.14 Score=43.70 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=34.5
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEECS 68 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~~ 68 (74)
|+|+||++|+.+.++ ....||.++. .+..+++||.+ ..|...+++++++++|
T Consensus 590 a~rlGa~~Vtiv~rr--------~~~em~a~~~--e~~~a~eeGI~------~~~~~~p~~i~~~~~G 641 (1006)
T PRK12775 590 AKRLGAPTVRCVYRR--------SEAEAPARIE--EIRHAKEEGID------FFFLHSPVEIYVDAEG 641 (1006)
T ss_pred HHHcCCCEEEEEeec--------CcccCCCCHH--HHHHHHhCCCE------EEecCCcEEEEeCCCC
Confidence 468999999987533 2334555543 34578888877 5677777777665444
No 9
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=83.55 E-value=0.65 Score=38.03 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=30.2
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEE 66 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde 66 (74)
+.|+||++|+-|+.++. ..||.++.. +..+.+||.+ ..+...++++++++
T Consensus 589 ~~r~Ga~~Vtlv~r~~~--------~~~~~~~~e--~~~~~~~GV~------i~~~~~~~~i~~~~ 638 (752)
T PRK12778 589 AKRLGAERVTIVYRRSE--------EEMPARLEE--VKHAKEEGIE------FLTLHNPIEYLADE 638 (752)
T ss_pred HHHcCCCeEEEeeecCc--------ccCCCCHHH--HHHHHHcCCE------EEecCcceEEEECC
Confidence 36899999999876543 345554432 3457788766 34455555555443
No 10
>PRK12831 putative oxidoreductase; Provisional
Probab=62.35 E-value=4.7 Score=31.31 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=28.8
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFEEC 67 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gde~ 67 (74)
+.|+|++ |+-+.+... ..+|..+ ..+..+.+||.+ ..+...+++|+++++
T Consensus 300 l~r~Ga~-Vtlv~r~~~--------~~m~a~~--~e~~~a~~eGV~------i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 300 ALRLGAE-VHIVYRRSE--------EELPARV--EEVHHAKEEGVI------FDLLTNPVEILGDEN 349 (464)
T ss_pred HHHcCCE-EEEEeecCc--------ccCCCCH--HHHHHHHHcCCE------EEecccceEEEecCC
Confidence 3588988 988865432 2233332 234456777766 455566666655443
No 11
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=49.47 E-value=9.9 Score=29.50 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=13.4
Q ss_pred CCccCCceeEEecccCC
Q psy12811 1 MNLFGAQSIVSFEILPQ 17 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~ 17 (74)
|++.||++||-+.+.+.
T Consensus 301 a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 301 AIRLGAASVTCAYRRDE 317 (467)
T ss_pred HHHcCCCeEEEEEecCc
Confidence 36789999999977654
No 12
>PHA01634 hypothetical protein
Probab=44.53 E-value=10 Score=26.68 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.7
Q ss_pred CCceeEEecccCCC
Q psy12811 5 GAQSIVSFEILPQP 18 (74)
Q Consensus 5 GA~SV~Q~e~~p~p 18 (74)
||+.|+++|..|+.
T Consensus 50 GAK~Vva~E~~~kl 63 (156)
T PHA01634 50 GASFVVQYEKEEKL 63 (156)
T ss_pred CccEEEEeccCHHH
Confidence 99999999876554
No 13
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.37 E-value=15 Score=28.33 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=25.3
Q ss_pred CccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhhhcCCCccEEeEeeeEeecC
Q psy12811 2 NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKVKHNHDPREFCIFELRFPFE 65 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~~~g~dpR~y~v~t~~F~gd 65 (74)
.|+|++ |+-+.+.+. ..+|... ..+....+||.+ ..+...+++|.++
T Consensus 292 ~~~G~~-Vtlv~~~~~--------~~~~~~~--~~~~~l~~~GV~------~~~~~~~~~i~~~ 338 (449)
T TIGR01316 292 LRLGAE-VHCLYRRTR--------EDMTARV--EEIAHAEEEGVK------FHFLCQPVEIIGD 338 (449)
T ss_pred HHcCCE-EEEEeecCc--------ccCCCCH--HHHHHHHhCCCE------EEeccCcEEEEEc
Confidence 578987 999877643 1222222 223445667765 3444455555443
No 14
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=34.63 E-value=24 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=20.7
Q ss_pred CccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhh
Q psy12811 2 NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKV 46 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~ 46 (74)
.|+|+++|+.+++.... .+|..+. .+....++|.+
T Consensus 293 ~~~G~~~Vtlv~~~~~~--------~~~~~~~--~~~~~~~~GV~ 327 (457)
T PRK11749 293 KRLGAESVTIVYRRGRE--------EMPASEE--EVEHAKEEGVE 327 (457)
T ss_pred HHcCCCeEEEeeecCcc--------cCCCCHH--HHHHHHHCCCE
Confidence 47899999998765321 2232222 34556677665
No 15
>KOG4389|consensus
Probab=30.35 E-value=20 Score=29.93 Aligned_cols=15 Identities=40% Similarity=1.070 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCcccc
Q psy12811 21 KRSQDNPWPQFPRIL 35 (74)
Q Consensus 21 ~R~~~~PWP~~P~v~ 35 (74)
.|+..||||+|--|+
T Consensus 453 hrsSa~pWP~WmGVm 467 (601)
T KOG4389|consen 453 HRSSANPWPKWMGVM 467 (601)
T ss_pred ccccCCCchhhhcCc
Confidence 588899999998543
No 16
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.81 E-value=24 Score=25.37 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.8
Q ss_pred CCccCCceeEEecccCC
Q psy12811 1 MNLFGAQSIVSFEILPQ 17 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~ 17 (74)
|+.+||++|.-+|++.-
T Consensus 19 aL~~GA~~iltveyn~L 35 (177)
T PF03269_consen 19 ALQHGAAKILTVEYNKL 35 (177)
T ss_pred HHHcCCceEEEEeeccc
Confidence 67899999999999754
No 17
>PF11540 Dynein_IC2: Cytoplasmic dynein 1 intermediate chain 2; PDB: 2PG1_L 3FM7_D 2P2T_C.
Probab=27.27 E-value=25 Score=18.81 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=8.6
Q ss_pred CccCCceeEEecccCCC
Q psy12811 2 NLFGAQSIVSFEILPQP 18 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p~p 18 (74)
.+.|..+|+|++|-|+-
T Consensus 5 ~~L~~s~v~~~dipPkE 21 (33)
T PF11540_consen 5 KKLGVSKVTQTDIPPKE 21 (33)
T ss_dssp --EEEB-EEEEEE----
T ss_pred ceeeEEEEEEeccCCcc
Confidence 45677889999987753
No 18
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=26.36 E-value=12 Score=28.20 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCccCCceeEEecccCCCCCCCCCCCCCCC
Q psy12811 1 MNLFGAQSIVSFEILPQPNPKRSQDNPWPQ 30 (74)
Q Consensus 1 a~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~ 30 (74)
|+|+-|+......++|.|+..| ..-|||-
T Consensus 224 Al~~R~~~Ll~~~~~P~P~~~~-p~iPWP~ 252 (253)
T TIGR03843 224 ALRRRVDRLLETGVFPAPSGHW-PAIPWPP 252 (253)
T ss_pred HHHHHHHHHHhCCCCCCCCCCC-CCCCCCC
Confidence 3455566666777899988876 5678985
No 19
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=22.32 E-value=40 Score=26.44 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=7.8
Q ss_pred CCCCCCCCcc
Q psy12811 24 QDNPWPQFPR 33 (74)
Q Consensus 24 ~~~PWP~~P~ 33 (74)
-..+||.|+-
T Consensus 57 t~~~Wp~w~~ 66 (413)
T PRK10173 57 TPNAWPEWDV 66 (413)
T ss_pred CCCCCCCCCC
Confidence 3478999994
Done!