Query psy12811
Match_columns 74
No_of_seqs 108 out of 513
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:23:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vdc_G Glutamate synthase [NAD 93.2 0.013 4.5E-07 43.8 -0.4 35 2-46 284-318 (456)
2 1gte_A Dihydropyrimidine dehyd 39.7 6 0.00021 32.4 -0.1 15 2-16 352-366 (1025)
3 3ic9_A Dihydrolipoamide dehydr 35.4 2.3 7.9E-05 31.4 -2.9 40 25-64 348-390 (492)
4 2al3_A TUG long isoform; TUG U 17.9 50 0.0017 20.2 1.3 19 40-58 35-53 (90)
5 2pg1_I Cytoplasmic dynein 1 in 15.8 47 0.0016 17.0 0.7 17 2-18 5-21 (33)
6 3fm7_C Dynein intermediate cha 15.1 26 0.00089 17.3 -0.4 15 4-18 2-16 (27)
7 1wmh_B Partitioning defective- 9.8 57 0.002 19.8 -0.2 16 43-58 8-23 (86)
8 1j34_C Coagulation factor IX; 9.6 58 0.002 17.8 -0.2 15 39-53 23-37 (46)
9 1b64_A Elongation factor 1-bet 8.8 1.4E+02 0.0049 17.9 1.4 16 6-21 4-19 (91)
10 1nl0_G Factor IX; immune syste 8.5 71 0.0024 17.7 -0.1 15 39-53 23-37 (51)
No 1
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=93.21 E-value=0.013 Score=43.78 Aligned_cols=35 Identities=23% Similarity=0.091 Sum_probs=25.6
Q ss_pred CccCCceeEEecccCCCCCCCCCCCCCCCCcccccccchhHhhhh
Q psy12811 2 NLFGAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEEVKV 46 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p~pP~~R~~~~PWP~~P~v~~v~yaheEg~~ 46 (74)
+|+||++|++|.+.+ ..+||.++. .++++++||.+
T Consensus 284 ~r~Ga~~Vtiv~r~~--------~~~~p~~~~--e~~~~~~~Gv~ 318 (456)
T 2vdc_G 284 IRQGATSVKCLYRRD--------RKNMPGSQR--EVAHAEEEGVE 318 (456)
T ss_dssp HHTTCSEEEEECSSC--------STTCSSCHH--HHHHHHHTTCE
T ss_pred HHcCCCEEEEEEeCC--------ccCCCCCHH--HHHHHHHCCCE
Confidence 589999999995543 335777664 36788898876
No 2
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=39.68 E-value=6 Score=32.35 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=12.5
Q ss_pred CccCCceeEEecccC
Q psy12811 2 NLFGAQSIVSFEILP 16 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p 16 (74)
.|+||++||.+++.+
T Consensus 352 ~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 352 LRCGARRVFLVFRKG 366 (1025)
T ss_dssp HHTTCSEEEEECSSC
T ss_pred HHcCCCEEEEEEecC
Confidence 578999999997765
No 3
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=35.42 E-value=2.3 Score=31.40 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=30.6
Q ss_pred CCCCCCC--cccccccchhHhhhhhcCCCc-cEEeEeeeEeec
Q psy12811 25 DNPWPQF--PRILKVDYGHEEVKVKHNHDP-REFCIFELRFPF 64 (74)
Q Consensus 25 ~~PWP~~--P~v~~v~yaheEg~~~~g~dp-R~y~v~t~~F~g 64 (74)
..||-.+ |.+-.+....+|+.+.+|+|+ ..|.+.+..|..
T Consensus 348 ~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~ 390 (492)
T 3ic9_A 348 APLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEG 390 (492)
T ss_dssp CCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGG
T ss_pred CCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEecc
Confidence 4566655 788899999999999888776 667777766643
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=17.95 E-value=50 Score=20.17 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.5
Q ss_pred hhHhhhhhcCCCccEEeEe
Q psy12811 40 GHEEVKVKHNHDPREFCIF 58 (74)
Q Consensus 40 aheEg~~~~g~dpR~y~v~ 58 (74)
--+|++++||-|+..|...
T Consensus 35 VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 35 VLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp HHHHHHHHTTCCGGGCEEE
T ss_pred HHHHHHHHhCCChhhCeEE
Confidence 3689999999999999774
No 5
>2pg1_I Cytoplasmic dynein 1 intermediate chain 2; dynein light chain, LC8, PIN, tctex1, structural protein; 2.80A {Rattus norvegicus}
Probab=15.80 E-value=47 Score=16.96 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=12.1
Q ss_pred CccCCceeEEecccCCC
Q psy12811 2 NLFGAQSIVSFEILPQP 18 (74)
Q Consensus 2 ~RqGA~SV~Q~e~~p~p 18 (74)
++.|..+|.|.+|-|+-
T Consensus 5 ~~L~~s~v~~~~ipPkE 21 (33)
T 2pg1_I 5 IKLGMAKITQVDFPPRE 21 (33)
T ss_dssp -CCEECCCEEEEECCCC
T ss_pred ceeeEEEEEEeccCCcc
Confidence 46677888898887653
No 6
>3fm7_C Dynein intermediate chain, cytosolic; cytoplasmic dynein, light chain tctex-1, tctex, light chain intermediate chain; 3.50A {Drosophila melanogaster}
Probab=15.14 E-value=26 Score=17.28 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.9
Q ss_pred cCCceeEEecccCCC
Q psy12811 4 FGAQSIVSFEILPQP 18 (74)
Q Consensus 4 qGA~SV~Q~e~~p~p 18 (74)
.|..+|+|.+|-|+-
T Consensus 2 L~~s~v~~~nipPkE 16 (27)
T 3fm7_C 2 LSVYNVQATNIPPKE 16 (27)
T ss_dssp EEECCCCCCEECCCC
T ss_pred cceeEEEEeccCCcc
Confidence 456677887776653
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=9.78 E-value=57 Score=19.76 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=12.8
Q ss_pred hhhhhcCCCccEEeEe
Q psy12811 43 EVKVKHNHDPREFCIF 58 (74)
Q Consensus 43 Eg~~~~g~dpR~y~v~ 58 (74)
|.+.+||.|-|+|++.
T Consensus 8 ~vKskf~aE~RRFs~d 23 (86)
T 1wmh_B 8 EVKSKFDAEFRRFALP 23 (86)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEeecCCeeeEeEcc
Confidence 4456789999999985
No 8
>1j34_C Coagulation factor IX; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Bos taurus} SCOP: g.32.1.1 PDB: 1j35_C* 1cfh_A 1cfi_A* 1mgx_A 1iod_G*
Probab=9.63 E-value=58 Score=17.75 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=10.8
Q ss_pred chhHhhhhhcCCCcc
Q psy12811 39 YGHEEVKVKHNHDPR 53 (74)
Q Consensus 39 yaheEg~~~~g~dpR 53 (74)
=+.|||.++|..+++
T Consensus 23 Cs~EEArEvFe~~~~ 37 (46)
T 1j34_C 23 CSFEEAREVFENTEK 37 (46)
T ss_dssp CCHHHHHHHHCCHHH
T ss_pred CCHHHHHHHhcCcHH
Confidence 367899888876553
No 9
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=8.84 E-value=1.4e+02 Score=17.89 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=13.9
Q ss_pred CceeEEecccCCCCCC
Q psy12811 6 AQSIVSFEILPQPNPK 21 (74)
Q Consensus 6 A~SV~Q~e~~p~pP~~ 21 (74)
|||...|+++|.-++.
T Consensus 4 ~ks~vvl~VkP~d~et 19 (91)
T 1b64_A 4 AKSSILLDVKPWDDET 19 (91)
T ss_dssp SCEEEEEEEEESSTTS
T ss_pred ceEEEEEEEccCCCCc
Confidence 7999999999988764
No 10
>1nl0_G Factor IX; immune system, antibody, GLA domain; HET: CGU; 2.20A {Homo sapiens} SCOP: g.32.1.1
Probab=8.54 E-value=71 Score=17.74 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.1
Q ss_pred chhHhhhhhcCCCcc
Q psy12811 39 YGHEEVKVKHNHDPR 53 (74)
Q Consensus 39 yaheEg~~~~g~dpR 53 (74)
=+.|||.++|..+++
T Consensus 23 Cs~EEArEvFe~~~~ 37 (51)
T 1nl0_G 23 CSFEEAREVFENTER 37 (51)
T ss_dssp CCHHHHHTTSSSHHH
T ss_pred CCHHHHHHHhcCcHH
Confidence 367899998876654
Done!