RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12811
         (74 letters)



>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
           amidotransferase, ammonia assimilation, iron, zymogen;
           HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
          Length = 456

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 11/52 (21%)

Query: 5   GAQSIVSFEILPQPNPKRSQDNPWPQFPRILKVDYGHEE-VKVKHNHDPREF 55
           GA S+       + N         P      +V +  EE V+      P  F
Sbjct: 287 GATSVKCLYRRDRKN--------MP--GSQREVAHAEEEGVEFIWQAAPEGF 328


>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
          reductase, glutathione-dependent formaldehyde
          dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
          sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
          2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
          Length = 373

 Score = 25.2 bits (56), Expect = 2.1
 Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 4/21 (19%)

Query: 22 RSQDNPWPQFPRILKVDYGHE 42
           S  +P   FP IL    GH 
Sbjct: 51 LSGADPEGCFPVIL----GHL 67


>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
           neurotransmitter cleavage, catalytic triad, alpha/beta
           hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
           c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
           1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
           1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
           1vxr_A* ...
          Length = 537

 Score = 23.5 bits (51), Expect = 9.6
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 18  PNPKRSQDNPWPQF----PRILKVDYGHEEVKVKHNHDPREF 55
           PN   SQ++ WP F     + + ++    +V  +       F
Sbjct: 482 PNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVF 523


>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
           MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
           1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
           3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
           2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
          Length = 529

 Score = 23.5 bits (51), Expect = 9.8
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)

Query: 18  PNPKRSQDNPWPQF----PRILKVDYGHEEVKVKHNHDPREF 55
           P   ++Q   WP F     + L ++     +  K       F
Sbjct: 480 PQETQNQSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRF 521


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.142    0.487 

Gapped
Lambda     K      H
   0.267   0.0832    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,182,028
Number of extensions: 55109
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 4
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)