RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12811
         (74 letters)



>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 25.0 bits (55), Expect = 0.51
 Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 39 YGHEEVKVK--HNHDPREFCIFELRFPFEECSP 69
          YG    +    H HD    C         EC P
Sbjct: 29 YGKFIKRTTKLHVHDENNECGIGDVVEIRECRP 61


>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
           (Torpedo californica) [TaxId: 7787]}
          Length = 532

 Score = 22.8 bits (47), Expect = 5.6
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 18  PNPKRSQDNPWPQF----PRILKVDYGHEEVKVKHNHDPREF 55
           PN   SQ++ WP F     + + ++    +V  +       F
Sbjct: 479 PNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVF 520


>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
           middle domain {Methylophilus methylotrophus, w3a1
           [TaxId: 17]}
          Length = 233

 Score = 22.9 bits (47), Expect = 6.1
 Identities = 4/13 (30%), Positives = 4/13 (30%)

Query: 25  DNPWPQFPRILKV 37
             P   F    KV
Sbjct: 221 HMPGGNFKIEYKV 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.487 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,900
Number of extensions: 12181
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 5
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)