Query psy12813
Match_columns 98
No_of_seqs 77 out of 79
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:25:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3394|consensus 99.7 8E-18 1.7E-22 141.9 1.7 89 4-92 369-487 (502)
2 KOG3394|consensus 99.3 5.7E-12 1.2E-16 106.7 6.0 79 4-85 128-235 (502)
3 PF13015 PRKCSH_1: Glucosidase 98.4 1E-07 2.2E-12 70.0 1.8 65 15-84 64-133 (154)
4 KOG2397|consensus 96.7 0.00096 2.1E-08 57.1 2.3 61 15-81 404-470 (480)
5 PF07915 PRKCSH: Glucosidase I 96.7 9.9E-05 2.2E-09 47.1 -2.9 33 3-35 21-55 (81)
6 PF00878 CIMR: Cation-independ 94.2 0.14 3E-06 35.7 5.1 38 41-80 6-43 (145)
7 PF02157 Man-6-P_recep: Mannos 91.8 0.22 4.7E-06 40.3 3.7 72 8-80 94-181 (278)
8 PF13816 Dehydratase_hem: Haem 63.7 6.9 0.00015 31.8 2.7 29 6-34 42-72 (310)
9 KOG4504|consensus 60.3 19 0.0004 30.4 4.7 41 41-81 186-226 (370)
10 TIGR00125 cyt_tran_rel cytidyl 40.1 22 0.00048 20.8 1.7 19 16-34 2-23 (66)
11 PF11108 Phage_glycop_gL: Vira 31.9 23 0.0005 25.2 0.9 16 55-70 18-33 (111)
12 PF09451 ATG27: Autophagy-rela 30.1 73 0.0016 24.8 3.5 38 40-79 134-171 (268)
13 cd02171 G3P_Cytidylyltransfera 29.8 47 0.001 22.3 2.1 21 15-35 3-26 (129)
14 cd02170 cytidylyltransferase c 24.7 63 0.0014 21.9 2.1 21 14-34 2-25 (136)
15 PF03992 ABM: Antibiotic biosy 24.7 1E+02 0.0022 17.9 2.8 28 5-32 40-69 (78)
16 PHA03152 hypothetical protein; 22.5 45 0.00098 24.7 1.0 17 55-71 42-58 (138)
No 1
>KOG3394|consensus
Probab=99.68 E-value=8e-18 Score=141.90 Aligned_cols=89 Identities=33% Similarity=0.452 Sum_probs=82.7
Q ss_pred cceeeecCCceeEEEEecccH-HHHHHHhhccccc--cc---------------------------cceEEEEeeeCCCC
Q psy12813 4 KDVIKKETGKEAEVVLKDFKE-DNQSWIGRAEQIA--AL---------------------------RDKVKLKCVNSGLG 53 (98)
Q Consensus 4 ~Q~H~d~~~~~~~i~LG~~d~-~H~~W~~~n~~~~--~k---------------------------rveVrlkC~e~~~s 53 (98)
+|||++.+..+.++++|+|+. .|.+|+++|+.+. .+ .|.|+++|+++..+
T Consensus 369 ~qyhe~~ds~~~e~~i~~~~~e~~~el~~~~s~~~~a~~~~~~~~~~~i~~~~~k~~~~~~~~~~~~v~v~lk~~~s~~~ 448 (502)
T KOG3394|consen 369 NQYHEEIDSEEAEIIIQEYLIELDIELLKKNSKRIAAAKALGNTTVSSIEHEEEKENHELQPNVDREVAVKLKLKPSLNS 448 (502)
T ss_pred heeeeeccccchhhhhhhhhhcccHHHHhccChhHHHHHHhhccccccHHHHhhcCChhccCCCCceeeeeccCCCCCCC
Confidence 799999999999999999999 9999999998544 11 19999999998889
Q ss_pred CceEEEeeeCCCceeEEEeeeccccccCCcCcccCCCcc
Q psy12813 54 SFSVALYLLEPHTCRYILGVESSMICKLLPYADEYGLFK 92 (98)
Q Consensus 54 ~~aVs~yLlEP~tC~YiL~VeSp~iC~~l~~aDe~Gl~~ 92 (98)
+++|.+|++||.+|+|||+|+||.||++...||.+||++
T Consensus 449 ~~~v~~y~l~~~~~~~il~~~~~~i~~~~~~~~~~~l~~ 487 (502)
T KOG3394|consen 449 DNAVPQYNLEPMSCQYILGVESRDICELGSQADSNGLLE 487 (502)
T ss_pred cccchhhhcccccceeeecccCCchhhhhccCCCccccc
Confidence 999999999999999999999999999999999999998
No 2
>KOG3394|consensus
Probab=99.27 E-value=5.7e-12 Score=106.74 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=62.0
Q ss_pred cceeeecCC----ceeEEEEecccHHHHHHHhhccc----cc---------------------cccceEEEEeeeCCCCC
Q psy12813 4 KDVIKKETG----KEAEVVLKDFKEDNQSWIGRAEQ----IA---------------------ALRDKVKLKCVNSGLGS 54 (98)
Q Consensus 4 ~Q~H~d~~~----~~~~i~LG~~d~~H~~W~~~n~~----~~---------------------~krveVrlkC~e~~~s~ 54 (98)
||||+|.+. ..++.+||+|+. .+.|..+++. ++ ||-|+||+.|.++ .++
T Consensus 128 rQyH~E~~~~~~i~~qe~yLg~~~~-~~~~~~ke~~~~~~~~~~~~Y~s~ty~nGT~CDltg~PR~~~VrYvC~~~-~~~ 205 (502)
T KOG3394|consen 128 RQYHEEPETKTGIVNQEFYLGNFLG-KFTASLKEREAEASTDDRKPYHSETYGNGTMCDLTGRPRMVEVRYVCDES-SGK 205 (502)
T ss_pred eeeeccccccCcceeeeeeeeeccc-cchhhhhhhhhhhhhccccceeEEEecCCCccccCCCCceEEEEEEeCCC-CCc
Confidence 899999863 569999999998 4555554441 11 1119999999985 566
Q ss_pred ceEEEeeeCCCceeEEEeeeccccccCCcCc
Q psy12813 55 FSVALYLLEPHTCRYILGVESSMICKLLPYA 85 (98)
Q Consensus 55 ~aVs~yLlEP~tC~YiL~VeSp~iC~~l~~a 85 (98)
+.| .++.|+++|+|.++|.+|.+|.+-.++
T Consensus 206 ~~I-~sV~EvssC~Ye~~I~tp~LC~hP~~~ 235 (502)
T KOG3394|consen 206 HYI-TSVTEVSSCVYEATILTPTLCSHPLFQ 235 (502)
T ss_pred ceE-EEEeeccceeEEEEEecccccCccccc
Confidence 666 599999999999999999999987665
No 3
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=98.41 E-value=1e-07 Score=70.02 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=44.4
Q ss_pred eEEEEecccH-HHHHHHhhcccc---cccc-ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccccCCcC
Q psy12813 15 AEVVLKDFKE-DNQSWIGRAEQI---AALR-DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICKLLPY 84 (98)
Q Consensus 15 ~~i~LG~~d~-~H~~W~~~n~~~---~~kr-veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~~l~~ 84 (98)
..+.||.|+. +...+.=.|-++ .|+| ++|.|.|-+ .+.| +++.||.+|+|.+.+.||..|..-.+
T Consensus 64 ~~~~lG~~~~~~~~~m~y~~G~~CwnGp~Rst~V~l~Cg~----~~~l-~sV~Ep~~C~Y~~~~~TP~aC~~~~~ 133 (154)
T PF13015_consen 64 DSTSLGSFKGWEGSKMKYENGDKCWNGPQRSTTVHLECGE----ENKL-VSVSEPSKCEYVMEFETPAACDPSYL 133 (154)
T ss_pred ccccceeeccceeeEEEECCCcccCCCCCcCEEEEEECCC----cceE-EEecCCCceEEEEEEeeCcccCChhh
Confidence 5678999997 411111111110 1233 999999966 2555 68999999999999999999965433
No 4
>KOG2397|consensus
Probab=96.71 E-value=0.00096 Score=57.10 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=43.8
Q ss_pred eEEEEecccH-HHHHHHh-hcccc---cccc-ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccccC
Q psy12813 15 AEVVLKDFKE-DNQSWIG-RAEQI---AALR-DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICKL 81 (98)
Q Consensus 15 ~~i~LG~~d~-~H~~W~~-~n~~~---~~kr-veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~~ 81 (98)
..++.|+|+. ++ .-++ +|-+. .|+| +.|++.|.. ..-| ++++||+.|.|+..+.||.-|.-
T Consensus 404 ~~~~~~~w~~~e~-~~m~y~nG~~CWnGP~RSa~v~v~Cg~----e~~i-~sv~Ep~kCeY~~~~~tPaaC~~ 470 (480)
T KOG2397|consen 404 KSIYGGSWSGPEG-SVMKYENGQQCWNGPNRSATVTVRCGL----ENEI-VSVTEPSKCEYLFELVTPAACNE 470 (480)
T ss_pred cccccccccCCcc-ceeeecCccccccCCCcceeEEEEecc----ccee-eeccccccceeeeEecccccCCc
Confidence 4578899998 66 1111 11111 1344 999999966 2444 69999999999999999999963
No 5
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyses the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing []. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum []. Mutations in the gene coding for PRKCSH have been found to be involved in the development of autosomal dominant polycystic liver disease (ADPLD), but the precise role the protein has in the pathogenesis of this disease is unknown []. ; PDB: 3AIH_A.
Probab=96.70 E-value=9.9e-05 Score=47.05 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=18.5
Q ss_pred ccceee-ecCCceeEEEEecccH-HHHHHHhhccc
Q psy12813 3 SKDVIK-KETGKEAEVVLKDFKE-DNQSWIGRAEQ 35 (98)
Q Consensus 3 ~~Q~H~-d~~~~~~~i~LG~~d~-~H~~W~~~n~~ 35 (98)
-+|||+ +++....+++||.|+. +|.+|.+.+..
T Consensus 21 v~QfH~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~ 55 (81)
T PF07915_consen 21 VRQFHEEEKDKPGQEYSLGRFDNESHFSWRDSNVD 55 (81)
T ss_dssp EEEE-EETTEE-S--EEEEEE--EEEEEEE-----
T ss_pred EEEecccCCCCCcceEEeeeEecccchhhhccccc
Confidence 389999 6678889999999988 78888777654
No 6
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes. Lysosomal enzymes bearing phosphomannosyl residues bind specifically to mannose-6-phosphate receptors in the golgi apparatus and the resulting receptor-ligand complex is transported to an acidic prelysosomal compartment where the low pH mediates the dissociation of the complex. This receptor also binds insulin growth factor. It contains 15 copies of a repeat.; GO: 0005215 transporter activity, 0006810 transport, 0005737 cytoplasm, 0016021 integral to membrane; PDB: 1SYO_A 1SZ0_A 1Q25_A 2KVB_A 2KVA_A 2L2G_A 2V5O_A 1GP0_A 1GP3_A 1E6F_B ....
Probab=94.17 E-value=0.14 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.466 Sum_probs=29.6
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeecccccc
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~ 80 (98)
+.|.|.|.++..++.-+ ++.|-..|+|++..+|+.-|.
T Consensus 6 t~I~F~C~~~~~~~~P~--~~~~~~~C~y~f~W~T~~AC~ 43 (145)
T PF00878_consen 6 TTIIFVCDPGAGSGSPV--FVSEDDSCTYVFEWRTPLACP 43 (145)
T ss_dssp EEEEEEE-SSSSTTEEE--EEEEETTTEEEEEEEEGGGSS
T ss_pred EEEEEEeCCCCCCCCCE--EEEecCCeEEEEEEEehhcCc
Confidence 89999999876555444 444555999999999999999
No 7
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=91.80 E-value=0.22 Score=40.35 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=46.2
Q ss_pred eecCCceeEEEEecccHH----HHHHHhh----------ccccccccceEEEEeeeCCCCCc--eEEEeeeCCCceeEEE
Q psy12813 8 KKETGKEAEVVLKDFKED----NQSWIGR----------AEQIAALRDKVKLKCVNSGLGSF--SVALYLLEPHTCRYIL 71 (98)
Q Consensus 8 ~d~~~~~~~i~LG~~d~~----H~~W~~~----------n~~~~~krveVrlkC~e~~~s~~--aVs~yLlEP~tC~YiL 71 (98)
.|+..++ .++||.+++. -..|+-. +..++.|+..+-|.|-....+.. +|+-+...+.-|-|..
T Consensus 94 ~d~~t~K-~~vIG~~n~T~vf~G~kwvmltY~gGd~yd~~~~~~~Rka~i~~tCdrd~~~~~~~~vse~~g~~~~C~Y~F 172 (278)
T PF02157_consen 94 IDKKTGK-YTVIGRYNSTPVFRGSKWVMLTYKGGDKYDSHCGKERRKAIIMFTCDRDTLAGNFTVVSEFVGKPNDCFYFF 172 (278)
T ss_dssp EETTTTE-EEEEEEEEEEEEEEESSEEEEEEEEEEB-SSSGGG-BEEEEEEEEE-TT-SSEEEEEEEEEETSSSEEEEEE
T ss_pred ecCCCCc-eEEEEeeeeeEEecCceEEEEEcCCCCccCCccccccceeEEEEEEcCCCCccccceeeeecCCccceEEEE
Confidence 3444344 4699999983 2678621 11222345788899987543322 4666788899999999
Q ss_pred eeecccccc
Q psy12813 72 GVESSMICK 80 (98)
Q Consensus 72 ~VeSp~iC~ 80 (98)
.+.|+..|.
T Consensus 173 Ev~S~~AC~ 181 (278)
T PF02157_consen 173 EVRSSHACP 181 (278)
T ss_dssp EEEEGGG--
T ss_pred EecchhcCc
Confidence 999999996
No 8
>PF13816 Dehydratase_hem: Haem-containing dehydratase; PDB: 3A18_C 3A17_F 3A15_C 3A16_D.
Probab=63.69 E-value=6.9 Score=31.80 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=23.3
Q ss_pred eeeecCCceeEEEEecccH--HHHHHHhhcc
Q psy12813 6 VIKKETGKEAEVVLKDFKE--DNQSWIGRAE 34 (98)
Q Consensus 6 ~H~d~~~~~~~i~LG~~d~--~H~~W~~~n~ 34 (98)
.|.|.++..+.|+++||+. ++..|.+..+
T Consensus 42 ~~~d~~g~~n~i~vaYW~d~~~y~~W~~s~~ 72 (310)
T PF13816_consen 42 VHTDNDGPDNIIWVAYWTDPEAYERWWESSA 72 (310)
T ss_dssp EEE-TTS-EEEEEEEEESSHHHHHHHHHSHH
T ss_pred EEcCCCCCccEEEEEEeCCHHHHHHHhcccc
Confidence 4667789999999999995 8999998766
No 9
>KOG4504|consensus
Probab=60.32 E-value=19 Score=30.36 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=35.9
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccccC
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICKL 81 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~~ 81 (98)
+-+-|+|.....+...+.+|+.--++|.|-.-++|+--|.-
T Consensus 186 TlisFvC~~e~~~~~~~i~y~gnl~~Ct~FFew~tihACpt 226 (370)
T KOG4504|consen 186 TLISFVCRPEAGPTNRPILYSGNLQTCTLFFEWHTIHACPT 226 (370)
T ss_pred eeEEEEecCCCCCCCccEEEeccccceEEEEEecccccCcc
Confidence 89999997756666667889999999999999999999964
No 10
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=40.10 E-value=22 Score=20.84 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.4
Q ss_pred EEEEecccH---HHHHHHhhcc
Q psy12813 16 EVVLKDFKE---DNQSWIGRAE 34 (98)
Q Consensus 16 ~i~LG~~d~---~H~~W~~~n~ 34 (98)
.++.|+||. .|...+++-.
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~ 23 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAK 23 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHH
Confidence 478999999 8888888743
No 11
>PF11108 Phage_glycop_gL: Viral glycoprotein L; InterPro: IPR020175 Herpesviruses are enveloped by a lipid bilayer that contains at least a dozen glycoproteins. The virion surface glycoproteins mediate recognition of susceptible cells and promote fusion of the viral envelope with the cell membrane, leading to virus entry. No single glycoprotein associated with the virion membrane has been identified as the fusogen []. Glycoprotein L (gL) forms a non-covalently linked heterodimer with glycoprotein H (gH). This heterodimer is essential for virus-cell and cell-cell fusion since the association of gH and gL is necessary for correct localisation of gH to the virion or cell surface. gH anchoring the heterodimer to the plasma membrane through its transmembrane domain. gL lacks a transmembrane domain and is secreted from cells when expressed in the absence of gH [].; PDB: 3PHF_N.
Probab=31.93 E-value=23 Score=25.16 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=9.8
Q ss_pred ceEEEeeeCCCceeEE
Q psy12813 55 FSVALYLLEPHTCRYI 70 (98)
Q Consensus 55 ~aVs~yLlEP~tC~Yi 70 (98)
....+|+..|+||+++
T Consensus 18 ~I~~Iyl~~p~tC~g~ 33 (111)
T PF11108_consen 18 SISSIYLTSPSTCNGF 33 (111)
T ss_dssp T--EEEE--TTSSSS-
T ss_pred hhhheeecCcccCCCe
Confidence 4567899999999986
No 12
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=30.14 E-value=73 Score=24.77 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=28.8
Q ss_pred cceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccc
Q psy12813 40 RDKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMIC 79 (98)
Q Consensus 40 rveVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC 79 (98)
.++|.|.|.+.. ....+.. -.+...|.|-|...+|.-|
T Consensus 134 ~a~i~f~Cd~~~-~~~~~~~-~~~~~~~~l~l~~~t~~aC 171 (268)
T PF09451_consen 134 SAVIEFQCDKNA-SGPEGTS-KVDWDGCVLRLEWKTKYAC 171 (268)
T ss_pred EEEEEEEcCCCC-CCCceee-eecCCCcEEEEEEeccccc
Confidence 399999997742 2233321 3678899999999999999
No 13
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=29.84 E-value=47 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.5
Q ss_pred eEEEEecccH---HHHHHHhhccc
Q psy12813 15 AEVVLKDFKE---DNQSWIGRAEQ 35 (98)
Q Consensus 15 ~~i~LG~~d~---~H~~W~~~n~~ 35 (98)
..+.+|+||. .|.+.+++-.+
T Consensus 3 ~v~~~G~FDgvH~GH~~ll~~a~~ 26 (129)
T cd02171 3 VVITYGTFDLLHIGHLNLLERAKA 26 (129)
T ss_pred EEEEeeeeccCCHHHHHHHHHHHH
Confidence 5789999999 99999987543
No 14
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=24.71 E-value=63 Score=21.88 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.5
Q ss_pred eeEEEEecccH---HHHHHHhhcc
Q psy12813 14 EAEVVLKDFKE---DNQSWIGRAE 34 (98)
Q Consensus 14 ~~~i~LG~~d~---~H~~W~~~n~ 34 (98)
+..++.|+||. .|.+.+++-.
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~ 25 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAK 25 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHH
Confidence 35789999999 8888887643
No 15
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=24.68 E-value=1e+02 Score=17.89 Aligned_cols=28 Identities=7% Similarity=0.174 Sum_probs=20.0
Q ss_pred ceeeecCCceeEEEEecccH--HHHHHHhh
Q psy12813 5 DVIKKETGKEAEVVLKDFKE--DNQSWIGR 32 (98)
Q Consensus 5 Q~H~d~~~~~~~i~LG~~d~--~H~~W~~~ 32 (98)
+++.+.+.....+++..|+. +..+|.+.
T Consensus 40 ~~~~~~~~~~~~~~~~~W~s~~a~~~~~~s 69 (78)
T PF03992_consen 40 ELYRSLDDPNRYVIVERWESEEAFQAHFKS 69 (78)
T ss_dssp EEEEESSSTTEEEEEEEESSHHHHHHHHTS
T ss_pred EEEEecCCCCEEEEEEEECCHHHHHHHHcC
Confidence 45666666777999999999 44666554
No 16
>PHA03152 hypothetical protein; Provisional
Probab=22.55 E-value=45 Score=24.73 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.9
Q ss_pred ceEEEeeeCCCceeEEE
Q psy12813 55 FSVALYLLEPHTCRYIL 71 (98)
Q Consensus 55 ~aVs~yLlEP~tC~YiL 71 (98)
+-..+|+..|+||.|+=
T Consensus 42 ~I~~Iylt~p~tC~G~s 58 (138)
T PHA03152 42 DINWIYITDPHTCGGFS 58 (138)
T ss_pred eeeeeeecccccCCCeE
Confidence 34568999999999974
Done!