Query psy12813
Match_columns 98
No_of_seqs 77 out of 79
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:25:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aih_A Protein OS-9; beta barr 99.6 3.6E-17 1.2E-21 113.3 1.6 77 3-80 23-124 (124)
2 2lla_A Mannose-6-phosphate/ins 95.9 0.017 5.9E-07 38.9 5.6 40 41-80 98-137 (140)
3 1gp0_A Cation-independent mann 94.2 0.064 2.2E-06 36.6 4.6 40 41-81 101-141 (143)
4 2l2g_A IGF2R domain 11; insuli 92.8 0.14 4.7E-06 35.8 4.4 42 41-83 101-143 (151)
5 2l21_A Cation-independent mann 92.7 0.18 6.2E-06 35.1 4.9 42 41-83 104-146 (154)
6 2rl8_A Cation-dependent mannos 92.2 0.23 7.9E-06 35.4 4.9 40 39-80 111-154 (154)
7 2kva_A Cation-independent mann 89.2 0.55 1.9E-05 31.6 4.5 37 41-80 112-148 (148)
8 2v5o_A Cation-independent mann 80.0 1.4 4.9E-05 36.9 3.7 40 41-81 101-141 (627)
9 1q25_A CI, cation-independent 79.7 1.3 4.6E-05 35.1 3.3 39 41-80 393-432 (432)
10 1q25_A CI, cation-independent 78.2 1.9 6.6E-05 34.2 3.8 42 41-84 244-285 (432)
11 2v5o_A Cation-independent mann 74.6 3.9 0.00013 34.3 4.8 39 41-82 253-291 (627)
12 3a16_A Oxdre, aldoxime dehydra 57.5 6.1 0.00021 32.1 2.6 30 5-34 101-133 (373)
13 1kam_A Deamido-NAD(+), nicotin 33.1 31 0.001 23.7 2.8 27 7-33 1-30 (194)
14 3phf_B Envelope glycoprotein L 30.4 15 0.00052 25.2 0.8 16 55-70 21-36 (108)
15 1gcc_A Ethylene responsive ele 29.0 32 0.0011 20.6 2.0 17 14-30 25-42 (63)
16 3uly_B Charged multivesicular 27.8 22 0.00077 22.5 1.2 13 84-97 57-69 (69)
17 1coz_A Protein (glycerol-3-pho 27.2 41 0.0014 21.3 2.4 19 15-33 3-24 (129)
18 2b7l_A Glycerol-3-phosphate cy 26.1 44 0.0015 21.3 2.4 19 15-33 3-24 (132)
19 3glv_A Lipopolysaccharide core 25.9 46 0.0016 21.9 2.6 20 14-33 3-25 (143)
20 3b71_D T-cell surface glycopro 23.4 12 0.00041 19.7 -0.6 9 60-68 11-19 (26)
21 1qjc_A Phosphopantetheine aden 23.3 56 0.0019 21.2 2.6 20 14-33 2-24 (158)
No 1
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens}
Probab=99.63 E-value=3.6e-17 Score=113.25 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=56.0
Q ss_pred ccceeeecCC-ceeEEEEecccHHHHHHHhhcccc-------c-----------------cccceEEEEeeeCCCCCceE
Q psy12813 3 SKDVIKKETG-KEAEVVLKDFKEDNQSWIGRAEQI-------A-----------------ALRDKVKLKCVNSGLGSFSV 57 (98)
Q Consensus 3 ~~Q~H~d~~~-~~~~i~LG~~d~~H~~W~~~n~~~-------~-----------------~krveVrlkC~e~~~s~~aV 57 (98)
.+|||.++++ +.++++||+|+. .++|.+.+... + +|.|+|+|.|.++.......
T Consensus 23 v~Q~h~~~~~~~~~~~~LG~~~~-~~~~~~~~~~~~~~~~~~~y~~~~y~~G~~Cd~~g~~Rst~V~~~C~~~~~~~~~~ 101 (124)
T 3aih_A 23 IQQYHMEDSEIKGEVLYLGYYQS-AFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDY 101 (124)
T ss_dssp EEEECEETTEECSCCEEEEEEEE-EEEEEC-----------CEEEEEEEECCSBCTTTSCBCEEEEEEEECTTCCSSCCE
T ss_pred EEEecccCCCCCCCEEECccccc-cccccccccccccccccceeEEEEcCCCCccCCCCCCcEEEEEEEeCCCCCCCccE
Confidence 4899998763 456899999997 34566544210 0 12299999998853333555
Q ss_pred EEeeeCCCceeEEEeeecccccc
Q psy12813 58 ALYLLEPHTCRYILGVESSMICK 80 (98)
Q Consensus 58 s~yLlEP~tC~YiL~VeSp~iC~ 80 (98)
++++.||+||+|+|.|+||.+|+
T Consensus 102 i~~v~E~~~C~Y~~~v~tP~~C~ 124 (124)
T 3aih_A 102 IDRVDEPLSCSYVLTIRTPRLCP 124 (124)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCC
T ss_pred EEEEcCCCceEEEEEEEecccCC
Confidence 58999999999999999999995
No 2
>2lla_A Mannose-6-phosphate/insulin-like growth factor II; monotreme, IGF-II, domain 11, transport; NMR {Tachyglossus aculeatus}
Probab=95.89 E-value=0.017 Score=38.91 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=32.3
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeecccccc
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~ 80 (98)
+.+.|.|.+.........+...|...|.|.+..+|+.-|.
T Consensus 98 t~I~F~C~~~~~~~~~p~~~~~~~~~C~y~F~w~T~~ACp 137 (140)
T 2lla_A 98 SVISFVCKSDAGPTSQPLLLSVDEHTCTLFFSWHTSLACE 137 (140)
T ss_dssp EEEEEEECTTTTTSCEEEEEEECTTTCEEEEEEEEGGGSC
T ss_pred EEEEEEcCCCCCCCCCceEEeccCCCCEEEEEEeeCccCC
Confidence 8999999875444445545567889999999999999996
No 3
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like growth factor, transport, beta barrel; 1.4A {Homo sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D 2l29_A 2l2a_A
Probab=94.24 E-value=0.064 Score=36.62 Aligned_cols=40 Identities=10% Similarity=0.283 Sum_probs=29.1
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCC-CceeEEEeeeccccccC
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEP-HTCRYILGVESSMICKL 81 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP-~tC~YiL~VeSp~iC~~ 81 (98)
+.|.|.|...... ...-+++.|+ ..|.|.+.++||..|.-
T Consensus 101 t~I~f~C~~~~~~-~~~~~~v~~~~~~C~Y~f~~~T~~AC~~ 141 (143)
T 1gp0_A 101 SVISFVCRPEAGP-TNRPMLISLDKQTCTLFFSWHTPLACEQ 141 (143)
T ss_dssp EEEEEEECSSCCS-SCCCEEEEEETTTTEEEEEEEEGGGCC-
T ss_pred EEEEEEeCCCCCC-CCCCEEeecCCCCcEEEEEEeecccCCC
Confidence 9999999764222 1222466665 68999999999999963
No 4
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica}
Probab=92.80 E-value=0.14 Score=35.79 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=31.8
Q ss_pred ceEEEEeeeCCCCCceEEEeeeC-CCceeEEEeeeccccccCCc
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLE-PHTCRYILGVESSMICKLLP 83 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlE-P~tC~YiL~VeSp~iC~~l~ 83 (98)
+.+.|.|...... .+.-.++.| ..+|.|.+.+.|+..|....
T Consensus 101 t~I~F~Cd~~~~~-~~~p~~v~~~~~~C~Y~F~w~T~~AC~~~~ 143 (151)
T 2l2g_A 101 SVISFVCTHDSGA-NNKPVFVSLDKQTCTLYFSWHTPLACEKEE 143 (151)
T ss_dssp EEEEEEECSSSSC-CCCEEEEEEETTTTEEEEEEEEGGGSCCSC
T ss_pred EEEEEEECCCCCC-CCCcEEEEecCCceEEEEEEechhcCCCCC
Confidence 9999999764222 222246777 77899999999999998754
No 5
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus}
Probab=92.68 E-value=0.18 Score=35.13 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=31.2
Q ss_pred ceEEEEeeeCCCCCceEEEeee-CCCceeEEEeeeccccccCCc
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLL-EPHTCRYILGVESSMICKLLP 83 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLl-EP~tC~YiL~VeSp~iC~~l~ 83 (98)
+.+.|.|.......... .++- |..+|.|.+-++|+..|....
T Consensus 104 T~I~F~Cd~~~~~~~~p-~~v~~~~d~C~Y~F~w~T~~AC~~~~ 146 (154)
T 2l21_A 104 SYFSFVCKSDAGDDSQP-VFLSFDEQTCTSYFSWHTSLACEEEV 146 (154)
T ss_dssp EEEEEECCSSCTTTTCE-EEEEEETTTTEEEEEEECTTTCCSSC
T ss_pred EEEEEEECCCCCCCCce-EEEEECCCCeEEEEEEeccccCCCCC
Confidence 99999997753322233 3444 578899999999999998654
No 6
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Probab=92.15 E-value=0.23 Score=35.44 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=29.4
Q ss_pred ccceEEEEeeeCCCCCceEEEeeeCC----CceeEEEeeecccccc
Q psy12813 39 LRDKVKLKCVNSGLGSFSVALYLLEP----HTCRYILGVESSMICK 80 (98)
Q Consensus 39 krveVrlkC~e~~~s~~aVs~yLlEP----~tC~YiL~VeSp~iC~ 80 (98)
|.+.|.|.|......+ .. .++.|| ..|.|.+.+.||..|.
T Consensus 111 Rst~I~f~Cd~~~~~~-~~-~~v~E~~~~~~~C~Y~F~~~T~~ACP 154 (154)
T 2rl8_A 111 RRAVVMISCNRHTLAD-NF-NPVSEERGKVQDCFYLFEMDSSLACS 154 (154)
T ss_dssp CCEEEEEEECTTCSSE-EE-EEEEEECCSSSCCEEEEEEEEGGGCC
T ss_pred ceEEEEEEeCCCCCCC-cc-EEEecccCccCceEEEEEEecCccCC
Confidence 4499999997743232 22 345555 8999999999999994
No 7
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A
Probab=89.21 E-value=0.55 Score=31.63 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=27.4
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeecccccc
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~ 80 (98)
+.|.|.|......+. . .+..| ..|.|.+.++||.-|.
T Consensus 112 t~I~f~Cd~~~~~~~-p-~~~~~-~~C~Y~f~~~T~~ACp 148 (148)
T 2kva_A 112 TLITFLCDRDAGVGF-P-EYQEE-DNSTYNFRWYTSYACP 148 (148)
T ss_dssp EEEEEECCSSCSSCC-E-EECSC-CSSEEEEEEECGGGCC
T ss_pred EEEEEEeCCCCCCCC-C-EEeec-CCCEEEEEEeccccCc
Confidence 999999976432212 2 24545 8999999999999984
No 8
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Probab=79.98 E-value=1.4 Score=36.94 Aligned_cols=40 Identities=13% Similarity=0.392 Sum_probs=29.6
Q ss_pred ceEEEEeeeCCCCCceEEEeeeC-CCceeEEEeeeccccccC
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLE-PHTCRYILGVESSMICKL 81 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlE-P~tC~YiL~VeSp~iC~~ 81 (98)
+.+.|+|.... ...+.-+++-| +..|.|.+.++||.-|.-
T Consensus 101 T~I~f~Cd~~~-~~~~~p~~v~~~~~~C~y~f~w~T~~AC~~ 141 (627)
T 2v5o_A 101 SVISFVCRPEA-GPTNRPMLISLDKQTCTLFFSWHTPLACEQ 141 (627)
T ss_dssp EEEEEEECSSC-CTTCSCEEEEEETTTTEEEEEEEEGGGCCS
T ss_pred EEEEEEeCCCC-CcCCcceEeeecCCCcEEEEEEecHHhCCC
Confidence 99999996532 22222345556 789999999999999974
No 9
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Probab=79.66 E-value=1.3 Score=35.14 Aligned_cols=39 Identities=13% Similarity=0.398 Sum_probs=29.4
Q ss_pred ceEEEEeeeCCCC-CceEEEeeeCCCceeEEEeeecccccc
Q psy12813 41 DKVKLKCVNSGLG-SFSVALYLLEPHTCRYILGVESSMICK 80 (98)
Q Consensus 41 veVrlkC~e~~~s-~~aVs~yLlEP~tC~YiL~VeSp~iC~ 80 (98)
+.+.|.|.+.... +.....++.|. .|.|.+.++|+..|.
T Consensus 393 t~I~f~Cd~~~~~~~~~~p~~~~e~-~C~Y~f~~~T~~AC~ 432 (432)
T 1q25_A 393 SVINFECNQTAGNNGRGAPVFTGEV-DCTYFFTWDTKYACV 432 (432)
T ss_dssp EEEEEEECTTCTTTTTCCCEEEEEE-TTEEEEEEEEGGGCC
T ss_pred EEEEEEeCCCCCcCCCCccEEEeeC-ceEEEEEEeeeEecC
Confidence 9999999874331 22333466787 899999999999983
No 10
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Probab=78.20 E-value=1.9 Score=34.22 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=31.2
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccccCCcC
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICKLLPY 84 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~~l~~ 84 (98)
+.+.|.|......+. + ..+.|...|+|.+.++|+.-|..-..
T Consensus 244 t~I~f~C~~~~~~~~-~-~~~~~~~~C~Y~fe~~T~~ACp~~~~ 285 (432)
T 1q25_A 244 VTITFVCPSERREGT-I-PKLTAKSNCRFEIEWVTEYACHRDYL 285 (432)
T ss_dssp EEEEEECCSSCCCCC-C-CEEEEESSSEEEEEEECGGGSCGGGT
T ss_pred EEEEEEcCCCCCCCC-C-ceEEecCCCEEEEEEeecccCCCCcC
Confidence 999999977433221 1 23447889999999999999987544
No 11
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Probab=74.56 E-value=3.9 Score=34.29 Aligned_cols=39 Identities=13% Similarity=0.356 Sum_probs=30.3
Q ss_pred ceEEEEeeeCCCCCceEEEeeeCCCceeEEEeeeccccccCC
Q psy12813 41 DKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICKLL 82 (98)
Q Consensus 41 veVrlkC~e~~~s~~aVs~yLlEP~tC~YiL~VeSp~iC~~l 82 (98)
+.|.|.|.++...+ ... + .|...|.|.+.++||..|...
T Consensus 253 t~I~F~Cd~~~~~~-~P~-~-~~~~~C~Y~Few~T~~ACp~~ 291 (627)
T 2v5o_A 253 SLIAFHCKRGVSMG-TPK-L-LRTSECDFVFEWETPVVCPDE 291 (627)
T ss_dssp EEEEEEECCSSCCC-CEE-E-CCCTTTEEEEEEEEGGGSCCC
T ss_pred EEEEEEeCCCCCCC-CCE-E-EecCCCEEEEEEechhcCcCc
Confidence 99999997753222 232 2 578999999999999999964
No 12
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase; HET: HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A* 3a17_A* 3a18_A*
Probab=57.45 E-value=6.1 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=24.2
Q ss_pred cee-eecCCceeEEEEecccH--HHHHHHhhcc
Q psy12813 5 DVI-KKETGKEAEVVLKDFKE--DNQSWIGRAE 34 (98)
Q Consensus 5 Q~H-~d~~~~~~~i~LG~~d~--~H~~W~~~n~ 34 (98)
++| .|.++-.+.|+++||+. ++..|.+..+
T Consensus 101 ~~~~~D~~g~~n~i~vaYW~d~~~y~~W~~~~~ 133 (373)
T 3a16_A 101 LTHHIDNQGYENLIVVGYWKDVSSQHRWSTSTP 133 (373)
T ss_dssp EEEEECTTSCEEEEEEEEESCHHHHHHHHHSHH
T ss_pred EEEEeCCCCCCCEEEEEEeCCHHHHHHHhhccc
Confidence 344 46678888999999999 7899998765
No 13
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=33.07 E-value=31 Score=23.73 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=16.6
Q ss_pred eeecCCceeEEEEecccH---HHHHHHhhc
Q psy12813 7 IKKETGKEAEVVLKDFKE---DNQSWIGRA 33 (98)
Q Consensus 7 H~d~~~~~~~i~LG~~d~---~H~~W~~~n 33 (98)
|+.+.-.+..++.|+||. .|++=+++-
T Consensus 1 ~m~~~m~~~~v~~GsFdp~H~GH~~l~~~a 30 (194)
T 1kam_A 1 HMPGGSKKIGIFGGTFDPPHNGHLLMANEV 30 (194)
T ss_dssp -----CCEEEEEEECCSSCCHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEeccccccHHHHHHHHHH
Confidence 443333456789999999 888766653
No 14
>3phf_B Envelope glycoprotein L; virus entry, membrane fusion, viral protein; 3.58A {Human herpesvirus 4}
Probab=30.40 E-value=15 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.3
Q ss_pred ceEEEeeeCCCceeEE
Q psy12813 55 FSVALYLLEPHTCRYI 70 (98)
Q Consensus 55 ~aVs~yLlEP~tC~Yi 70 (98)
.-..+|+..|+||.++
T Consensus 21 ~I~~Iylt~p~tC~G~ 36 (108)
T 3phf_B 21 NISDIYLVSNQTCDGF 36 (108)
T ss_dssp TCCEEEECCTTSSSSC
T ss_pred hhheeeecccccCCCe
Confidence 3456899999999986
No 15
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=28.98 E-value=32 Score=20.58 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.3
Q ss_pred eeEEEEecccH-HHHHHH
Q psy12813 14 EAEVVLKDFKE-DNQSWI 30 (98)
Q Consensus 14 ~~~i~LG~~d~-~H~~W~ 30 (98)
+..+.||+||. +.-+.+
T Consensus 25 g~r~~LGtf~T~eeAA~A 42 (63)
T 1gcc_A 25 GARVWLGTFETAEDAALA 42 (63)
T ss_dssp SEEEEEEEESSHHHHHHH
T ss_pred CeEEEeeeCCCHHHHHHH
Confidence 46899999999 444443
No 16
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=27.81 E-value=22 Score=22.50 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=11.1
Q ss_pred CcccCCCccCCCCC
Q psy12813 84 YADEYGLFKDVPAN 97 (98)
Q Consensus 84 ~aDe~Gl~~~~~~~ 97 (98)
..||+||.. +|++
T Consensus 57 ~vDEfGLP~-iPa~ 69 (69)
T 3uly_B 57 LVDEFGLPQ-IPAS 69 (69)
T ss_pred ccCccCccc-CCCC
Confidence 579999999 8874
No 17
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=27.24 E-value=41 Score=21.32 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.4
Q ss_pred eEEEEecccH---HHHHHHhhc
Q psy12813 15 AEVVLKDFKE---DNQSWIGRA 33 (98)
Q Consensus 15 ~~i~LG~~d~---~H~~W~~~n 33 (98)
..++.|+||. .|.+-+++-
T Consensus 3 ~~~~~G~FDp~H~GH~~li~~a 24 (129)
T 1coz_A 3 KVITYGTFDLLHWGHIKLLERA 24 (129)
T ss_dssp EEEEEECCCSCCHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999 888877753
No 18
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=26.15 E-value=44 Score=21.33 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=15.3
Q ss_pred eEEEEecccH---HHHHHHhhc
Q psy12813 15 AEVVLKDFKE---DNQSWIGRA 33 (98)
Q Consensus 15 ~~i~LG~~d~---~H~~W~~~n 33 (98)
..++.|+||. .|+.-+++-
T Consensus 3 ~~~~~G~FDp~H~GH~~li~~a 24 (132)
T 2b7l_A 3 RVITYGTYDLLHYGHIELLRRA 24 (132)
T ss_dssp EEEEEECCCSCCHHHHHHHHHH
T ss_pred EEEEeeecCcCCHHHHHHHHHH
Confidence 5689999999 888877653
No 19
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=25.94 E-value=46 Score=21.92 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=16.7
Q ss_pred eeEEEEecccH---HHHHHHhhc
Q psy12813 14 EAEVVLKDFKE---DNQSWIGRA 33 (98)
Q Consensus 14 ~~~i~LG~~d~---~H~~W~~~n 33 (98)
+..+++|+||. .|++-+++-
T Consensus 3 ~~v~~~G~FD~vH~GH~~li~~a 25 (143)
T 3glv_A 3 IRVMATGVFDILHLGHIHYLKES 25 (143)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHH
T ss_pred eEEEEEeecCCCCHHHHHHHHHH
Confidence 46799999999 898888763
No 20
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, ATP-binding, CEL junction, kinase, nucleotide-binding, phosphorylation; 2.82A {Homo sapiens}
Probab=23.42 E-value=12 Score=19.68 Aligned_cols=9 Identities=44% Similarity=0.778 Sum_probs=7.7
Q ss_pred eeeCCCcee
Q psy12813 60 YLLEPHTCR 68 (98)
Q Consensus 60 yLlEP~tC~ 68 (98)
+|.|-+|||
T Consensus 11 lL~ekKTCq 19 (26)
T 3b71_D 11 LLSEKKTCQ 19 (26)
T ss_pred HHhhccccc
Confidence 688999997
No 21
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=23.31 E-value=56 Score=21.22 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.7
Q ss_pred eeEEEEecccH---HHHHHHhhc
Q psy12813 14 EAEVVLKDFKE---DNQSWIGRA 33 (98)
Q Consensus 14 ~~~i~LG~~d~---~H~~W~~~n 33 (98)
+.-++.|+||. .|.+=+++-
T Consensus 2 ~i~i~~GsFDpvH~GH~~l~~~a 24 (158)
T 1qjc_A 2 KRAIYPGTFDPITNGHIDIVTRA 24 (158)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCCCCCHHHHHHHHHH
Confidence 35689999999 888777653
Done!