RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12813
         (98 letters)



>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA
           MAN; 2.10A {Homo sapiens}
          Length = 124

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 29  WIGRAEQIAALRDKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMIC 79
             GR  +      +V+  C      S      + EP +C Y+L + +  +C
Sbjct: 78  LNGRPREA-----EVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLC 123


>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like
           growth factor, transport, beta barrel; 1.4A {Homo
           sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D
           2l29_A 2l2a_A
          Length = 143

 Score = 26.5 bits (58), Expect = 1.2
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 43  VKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80
           +   C      +    L  L+  TC       + + C+
Sbjct: 103 ISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACE 140


>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate
           receptor, imprinting, protein evolution, signaling
           protein; NMR {Monodelphis domestica}
          Length = 151

 Score = 26.2 bits (57), Expect = 1.8
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 43  VKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80
           +   C +    +       L+  TC       + + C+
Sbjct: 103 ISFVCTHDSGANNKPVFVSLDKQTCTLYFSWHTPLACE 140


>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A
           {Mycobacterium smegmatis} PDB: 2wzw_A*
          Length = 235

 Score = 25.3 bits (55), Expect = 3.1
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 18  VLKDFKEDNQSWIGRAEQIAALRDKVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSM 77
            +      N +    A  +      + L     G+ S   AL      T R  LGVE+  
Sbjct: 142 HVAMLFAPNNTEARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAELGVENRK 201

Query: 78  ICKLLP--YADEYGLFKDVPAN 97
           +   +   YAD+         N
Sbjct: 202 LLMGISFGYADD-----TAAVN 218


>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein
          STR initiative, northeast structural genomics
          consortium, NESG; 3.10A {Staphylococcus haemolyticus}
          Length = 320

 Score = 24.9 bits (55), Expect = 4.5
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 9  KETGKEAEVVLKDFKEDNQSWIGRAEQI 36
          +    E  +      E + S+IG  ++I
Sbjct: 42 ERKFPEKNIYATGEAEPSLSFIGDLDEI 69


>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
          initiative, NEW YORK SGX research center for structural
          genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
          jejuni} SCOP: c.73.1.3
          Length = 251

 Score = 24.8 bits (55), Expect = 4.9
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 26 NQSWIGR-AEQIAALRDKVKLKCVNSG 51
          +   +      +A L +K ++  V S 
Sbjct: 20 SFERLKNLVAFLAKLMEKYEVILVTSA 46


>2l21_A Cation-independent mannose-6-phosphate receptor; genomic
           imprinting, insulin-like growth factor 2, mannose 6
           receptor, protein evolution; NMR {Gallus gallus}
          Length = 154

 Score = 24.2 bits (52), Expect = 6.8
 Identities = 5/34 (14%), Positives = 10/34 (29%)

Query: 47  CVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80
           C +             +  TC       +S+ C+
Sbjct: 110 CKSDAGDDSQPVFLSFDEQTCTSYFSWHTSLACE 143


>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
           receptor, CI-MPR; P-lectin, protein transport,S binding
           protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
           b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
          Length = 432

 Score = 24.5 bits (52), Expect = 8.1
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 43  VKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMIC 79
           +  +C  +   +   A        C Y    ++   C
Sbjct: 395 INFECNQTAGNNGRGAPVFTGEVDCTYFFTWDTKYAC 431


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,458,687
Number of extensions: 74350
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 15
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)