RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12813
         (98 letters)



>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 27.8 bits (61), Expect = 0.15
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 42  KVKLKCVNSGLGSFSVALYLLEPHTCRYILGVESSMICK 80
            +   C      +    L  L+  TC       + + C+
Sbjct: 95  VISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACE 133


>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 470

 Score = 26.2 bits (57), Expect = 0.72
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 7   IKKETGKEAEVVLKDFKEDNQSWIGRAEQIAALRDKVK 44
           I+ +TG  A   LK+FKE           + ALR +V+
Sbjct: 421 IQDDTGPRAT--LKEFKEKLAGDEKHQRAVRALRQEVE 456


>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
           (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 463

 Score = 23.5 bits (50), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 13  KEAEVVLKDFKEDNQSWIGRAEQIAALRDKVK 44
           K     L+DFK         ++++A LR +V+
Sbjct: 418 KSKTAKLQDFKSFLLKDSETSQRLANLRQRVE 449


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,114
Number of extensions: 13654
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)