Query psy12816
Match_columns 1453
No_of_seqs 630 out of 2418
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:32:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cet_A Conserved archaeal prot 99.6 2.6E-16 8.8E-21 180.5 11.5 200 86-319 59-272 (334)
2 3cet_A Conserved archaeal prot 97.3 7.6E-05 2.6E-09 86.3 2.0 106 863-999 176-319 (334)
3 3i33_A Heat shock-related 70 k 58.7 4.7 0.00016 47.0 3.1 40 131-170 188-231 (404)
4 2zgy_A Plasmid segregation pro 55.8 11 0.00036 42.9 5.3 39 134-172 145-183 (320)
5 1jce_A ROD shape-determining p 55.2 8.4 0.00029 43.9 4.4 42 132-173 126-168 (344)
6 3qfu_A 78 kDa glucose-regulate 53.5 5.2 0.00018 46.2 2.3 40 131-170 183-223 (394)
7 3d2f_A Heat shock protein homo 49.3 11 0.00037 47.7 4.4 40 131-170 168-214 (675)
8 4a2a_A Cell division protein F 48.1 6.4 0.00022 46.9 2.0 53 1-55 4-67 (419)
9 4gni_A Putative heat shock pro 45.3 7.7 0.00026 45.3 2.0 39 132-170 181-222 (409)
10 4b9q_A Chaperone protein DNAK; 45.2 10 0.00036 47.1 3.3 41 131-171 165-206 (605)
11 2v7y_A Chaperone protein DNAK; 43.9 12 0.00041 45.5 3.5 41 131-171 139-179 (509)
12 2fsj_A Hypothetical protein TA 42.3 14 0.0005 42.5 3.7 38 134-171 168-208 (346)
13 2d0o_A DIOL dehydratase-reacti 40.2 24 0.00082 43.7 5.2 28 151-178 405-433 (610)
14 1nbw_A Glycerol dehydratase re 40.1 24 0.00082 43.7 5.1 27 152-178 408-435 (607)
15 1dkg_D Molecular chaperone DNA 39.3 11 0.00037 43.6 2.0 40 132-171 166-206 (383)
16 2kho_A Heat shock protein 70; 38.0 11 0.00038 46.9 1.9 41 131-171 165-206 (605)
17 2ych_A Competence protein PILM 36.3 22 0.00076 40.8 4.0 50 4-54 12-71 (377)
18 4ehu_A Activator of 2-hydroxyi 35.9 21 0.00071 39.3 3.5 25 440-465 225-249 (276)
19 3h1q_A Ethanolamine utilizatio 34.5 23 0.00078 38.7 3.5 35 431-466 234-270 (272)
20 3nx4_A Putative oxidoreductase 33.4 70 0.0024 35.8 7.4 25 362-387 150-176 (324)
21 1yuw_A Heat shock cognate 71 k 32.7 21 0.00073 43.8 3.2 40 132-171 170-211 (554)
22 4apw_A ALP12; actin-like prote 31.6 22 0.00075 40.7 2.9 35 430-465 285-319 (329)
23 4ehu_A Activator of 2-hydroxyi 28.8 75 0.0026 34.8 6.5 48 6-54 2-49 (276)
24 1zbs_A Hypothetical protein PG 27.7 39 0.0013 37.7 4.0 17 155-171 2-18 (291)
25 3tqh_A Quinone oxidoreductase; 26.3 1.3E+02 0.0045 33.6 8.1 27 360-387 154-182 (321)
26 1zxo_A Conserved hypothetical 23.9 39 0.0013 37.7 3.0 17 155-171 2-18 (291)
27 3gqv_A Enoyl reductase; medium 23.1 1.3E+02 0.0044 34.6 7.3 27 360-387 166-194 (371)
28 1wlm_A Protein CGI-38; structu 22.5 64 0.0022 33.5 4.0 54 232-303 54-107 (151)
29 1hux_A Activator of (R)-2-hydr 21.9 47 0.0016 36.9 3.2 63 937-1000 189-252 (270)
30 1pul_A Hypothetical protein C3 20.8 1.3E+02 0.0043 30.4 5.6 55 232-303 59-113 (125)
No 1
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=99.65 E-value=2.6e-16 Score=180.53 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=152.1
Q ss_pred HHHHh--hcChhhHHHHHHHHHhccCCCcEEEEEcCCCcccccccc--ccceecccchhHHHHHHHhcCCCCCeEEEecC
Q psy12816 86 GSRAI--LSGPAGGLSFCKGFENNLQGVNVLFMQSDGGLTPMESFI--GSRAILSGPAGGLVGYATTSPTTAPVIGFDMG 161 (1453)
Q Consensus 86 ~~~a~--~s~~r~~~~y~~~~~~~l~~~~~~~~~~~gg~~~~~~~~--~~~~~~sgpa~g~~g~~~~~~~~~~~i~~d~g 161 (1453)
+|+|- -+..-|+..-++.+++.+ ++++.|.+.|||.++.+... |.+++.|||++++.-.+.. . ..+.|.+|||
T Consensus 59 gELaD~f~~k~eGV~~I~~~v~~~~-~~~v~i~~~dGG~l~~~~a~~~p~~~aaanw~ASa~~~A~~-~-~~~~llvDIG 135 (334)
T 3cet_A 59 AELADSYETKKEGVDNILNAAESAF-GSNISVFDSNGNFISLESAKTNNMKVSASNWCGTAKWVSKN-I-EENCILVDMG 135 (334)
T ss_dssp CC------CTTHHHHHHHHHHHHHH-TTCEEEECSSSCEEETTHHHHCGGGTBCCSSHHHHHHHHHH-T-CSSEEEEEEC
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHhc-CCceEEEecCCCcccHHHHhhCHHHHHhcCHHHHHHHHHHh-c-CCCEEEEEcC
Confidence 34444 233567777778888878 57999999999999999875 9999999999999944444 2 3579999999
Q ss_pred CCeeeEEEe-cCeeeEEE---------eeeeeccEEEeccccceeEeecCCCceEEEeCCeEEEcccccCCCCCCccccc
Q psy12816 162 GTSTDVSRY-YRELEHVF---------ESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFVVGPESAGALPGPRCYRN 231 (1453)
Q Consensus 162 gtstdv~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~i~tv~aGggS~~~~~~g~~~vgP~saga~PGPacy~~ 231 (1453)
|||||+..+ +|++.... |...++.+|+.+..+- ++|+.||.|. +|+||.
T Consensus 136 sTTTDIipi~~G~pl~g~tD~eRL~~gElvy~G~~RT~V~aL~-~sv~~gG~~~--------~v~~E~------------ 194 (334)
T 3cet_A 136 STTTDIIPIVEGKVVAEKTDLERLMNHELLYVGTLRTPISHLG-NTISFKGVDT--------NVSSEY------------ 194 (334)
T ss_dssp SSCEEEEEEETTEECCCSSHHHHHTTTSEECCCSSCCBGGGGC-SEEEETTEEE--------ECCCSS------------
T ss_pred cchhhhhhhcCCeecccCChHHHhccCCcEEEccccChHHHHh-hhcccCCEEE--------eecccc------------
Confidence 999999998 78886654 6666799999999999 9999999997 899998
Q ss_pred CCCcCcchhhhhccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy12816 232 QGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEINKFYKDNNIPKVLSIEEVALGFINVADETMC 311 (1453)
Q Consensus 232 gg~~t~tDa~~~lg~~~p~~f~~~~g~~~~~~ld~~~a~~a~~~la~~~~~~~~~~~~~~~~s~ee~A~g~~~va~~~m~ 311 (1453)
-+|.+|++++||.|.++.+.. =-|.|+ ...++++++.||+.++.+.. .-..-.++++|+.|++...+.++
T Consensus 195 --fATtaDa~~vLG~i~~~d~~~-~taDg~----~k~~~~~~~RLAr~vg~D~~---~~~~~~~~~lA~~~~~~q~~~I~ 264 (334)
T 3cet_A 195 --FAITADISVVLEKVTTEEYTC-DTPDGK----GTDKRSSLVRISKVLCSDLD---QISEIDAENIAKNYYELWKELIL 264 (334)
T ss_dssp --CCBHHHHHHHTTSSCGGGCCS-CCTTSC----CCSHHHHHHHHHHTTTCCTT---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHhCCCCcccccC-cCcCCc----cccHHHHHHHHHHHhCCChh---hcChhHHHHHHHHHHHHHHHHHH
Confidence 589999999999999775510 001111 13456677788887752110 00001288999999999999999
Q ss_pred HHHHHhhh
Q psy12816 312 RPIRAVTQ 319 (1453)
Q Consensus 312 ~~ir~~~~ 319 (1453)
++|+++..
T Consensus 265 ~av~~v~~ 272 (334)
T 3cet_A 265 ENVENVAE 272 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 2
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=97.25 E-value=7.6e-05 Score=86.25 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=67.0
Q ss_pred ceeeeeeecCCcceeEEecceeeeCCCCCCCCCCCccccCCCCcccccccccccccCCCcCCc-ccCCCCC---------
Q psy12816 863 DIDIQTVAAGGGSMLFFRSGLFVVGPESAGALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPA-IFGPNKD--------- 932 (1453)
Q Consensus 863 ~idI~SIGaGGGSIa~vd~G~LrVGPeSAGA~PGPACYgrGG~pTVTDAnlvLG~Ldp~~flG-~~~~~G~--------- 932 (1453)
.+. +||+.||.|. +|+||- -+|.+|++++||.++++.+.- .-+++++
T Consensus 176 aL~-~sv~~gG~~~--------~v~~E~--------------fATtaDa~~vLG~i~~~d~~~~taDg~~k~~~~~~~RL 232 (334)
T 3cet_A 176 HLG-NTISFKGVDT--------NVSSEY--------------FAITADISVVLEKVTTEEYTCDTPDGKGTDKRSSLVRI 232 (334)
T ss_dssp GGC-SEEEETTEEE--------ECCCSS--------------CCBHHHHHHHTTSSCGGGCCSCCTTSCCCSHHHHHHHH
T ss_pred HHh-hhcccCCEEE--------eecccc--------------cccHHHHHHHhCCCCcccccCcCcCCccccHHHHHHHH
Confidence 566 9999999998 889987 589999999999999886611 0011111
Q ss_pred ---CCCC-----H----HHHHHHHHH----Hh----h--hhcCCCCccchhhhcCCccchhhhHHHHHhCCceEe-----
Q psy12816 933 ---QPLD-----E----EGTREAFAL----LT----K--EARGYDTQDHILACFGGAGGQHACSVARSLGISSVY----- 985 (1453)
Q Consensus 933 ---~~Ld-----~----e~A~~Ai~~----ia----~--~~rG~DPrdf~LvafGGAGplhA~~lA~~LGi~~Vi----- 985 (1453)
+-.| . +.|+..++. |. . .+.+++ .++.-||+ .-.+..+|+. ..++
T Consensus 233 Ar~vg~D~~~~~~~~~~~lA~~~~~~q~~~I~~av~~v~~~~~~~----~vv~aG~G-~~L~~~la~~---~~~~~~~~~ 304 (334)
T 3cet_A 233 SKVLCSDLDQISEIDAENIAKNYYELWKELILENVENVAEKYGSK----KVVITGLG-ENILKDALAD---FEVISVAER 304 (334)
T ss_dssp HHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----EEEEESTT-HHHHHHHTTT---SEEEEHHHH
T ss_pred HHHhCCChhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----eEEEeCCc-HHHHHHHHhh---CCeeehhcc
Confidence 1112 1 122222221 21 1 122333 56666655 7778888776 4455
Q ss_pred e-cCCcccccccccc
Q psy12816 986 T-HRYAGILSAFGMA 999 (1453)
Q Consensus 986 V-P~~agv~SA~G~l 999 (1453)
+ |.++.+++|+|++
T Consensus 305 i~~~~s~vapA~avA 319 (334)
T 3cet_A 305 YGKDVSLATPSFAVA 319 (334)
T ss_dssp HCHHHHHSHHHHHHH
T ss_pred cCcccccccCHHHHH
Confidence 6 8899999999986
No 3
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=58.72 E-value=4.7 Score=46.97 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=30.6
Q ss_pred cceecccchhHHHHHHHhcC----CCCCeEEEecCCCeeeEEEe
Q psy12816 131 SRAILSGPAGGLVGYATTSP----TTAPVIGFDMGGTSTDVSRY 170 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~----~~~~~i~~d~ggtstdv~~~ 170 (1453)
...+++-|.+..+++..... ....++++|+||.|||++++
T Consensus 188 ~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~ 231 (404)
T 3i33_A 188 VLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSIL 231 (404)
T ss_dssp EEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEE
T ss_pred eEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEE
Confidence 34567788888777655433 24568999999999999988
No 4
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=55.84 E-value=11 Score=42.87 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.1
Q ss_pred ecccchhHHHHHHHhcCCCCCeEEEecCCCeeeEEEecC
Q psy12816 134 ILSGPAGGLVGYATTSPTTAPVIGFDMGGTSTDVSRYYR 172 (1453)
Q Consensus 134 ~~sgpa~g~~g~~~~~~~~~~~i~~d~ggtstdv~~~~~ 172 (1453)
++.=|.|..+++..--.....++++|+||.|||++++.+
T Consensus 145 ~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~ 183 (320)
T 2zgy_A 145 VMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMG 183 (320)
T ss_dssp EEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEG
T ss_pred EecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeC
Confidence 345566666665432122567999999999999999943
No 5
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=55.18 E-value=8.4 Score=43.86 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=29.5
Q ss_pred ceecccchhHHHHHHHhcCCCCCeEEEecCCCeeeEEEe-cCe
Q psy12816 132 RAILSGPAGGLVGYATTSPTTAPVIGFDMGGTSTDVSRY-YRE 173 (1453)
Q Consensus 132 ~~~~sgpa~g~~g~~~~~~~~~~~i~~d~ggtstdv~~~-~~~ 173 (1453)
..++.=|.+...++..-......++++|+||.|||++++ .|.
T Consensus 126 ~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~ 168 (344)
T 1jce_A 126 VFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGS 168 (344)
T ss_dssp EEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTE
T ss_pred EeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCC
Confidence 345666777666654322224679999999999999998 454
No 6
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=53.48 E-value=5.2 Score=46.19 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=30.0
Q ss_pred cceecccchhHHHHHHHhcC-CCCCeEEEecCCCeeeEEEe
Q psy12816 131 SRAILSGPAGGLVGYATTSP-TTAPVIGFDMGGTSTDVSRY 170 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~-~~~~~i~~d~ggtstdv~~~ 170 (1453)
...+++-|.+..+++..... ....++++|+||.|||++++
T Consensus 183 ~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~ 223 (394)
T 3qfu_A 183 VLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLL 223 (394)
T ss_dssp EEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEE
T ss_pred eEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEE
Confidence 34567788888777643322 25568999999999999998
No 7
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=49.35 E-value=11 Score=47.73 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=31.0
Q ss_pred cceecccchhHHHHHHHhcC-------CCCCeEEEecCCCeeeEEEe
Q psy12816 131 SRAILSGPAGGLVGYATTSP-------TTAPVIGFDMGGTSTDVSRY 170 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~-------~~~~~i~~d~ggtstdv~~~ 170 (1453)
...|+.=|.+..++|..... ....++++|+||.|||||++
T Consensus 168 ~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~ 214 (675)
T 3d2f_A 168 PVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIM 214 (675)
T ss_dssp EEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEE
Confidence 34577889988888865431 23569999999999999998
No 8
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=48.12 E-value=6.4 Score=46.88 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCCceEEEEeccCCccceEE-e-CCCCceEEEEecCCCCC--C-------CCchHHHHHHHhccc
Q psy12816 1 MASGKFNFAIDRGGTFTDVFA-I-CPDGKQCVMKLLSVSPE--Y-------PDAPTEGIRRILQQS 55 (1453)
Q Consensus 1 ~~~~~~~~~idrggtftd~~~-~-~~~g~~~~~klls~~p~--~-------~da~~~gir~~l~~~ 55 (1453)
|...++-+.+|.|.|-.=++. . .++|. .+...=+ .|. - -|+..+.||+.+++.
T Consensus 4 m~~~~~ivglDIGts~I~~vv~~~~~~~~-~i~g~~~-~~s~gv~~G~I~di~~~~~~I~~av~~a 67 (419)
T 4a2a_A 4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEW-EALAFSS-VKSRGLDEGEIKDAIAFKESVNTLLKEL 67 (419)
T ss_dssp ---CCEEEEEEECSSEEEEEEEEC----C-EEEEEEE-EECCSEETTEESBHHHHHHHHHHHHHHH
T ss_pred CccCCEEEEEEccCCEEEEEEEEEcCCCC-EEEEEEE-eccCCeeCCEEEcHHHHHHHHHHHHHHH
Confidence 444568899999999877443 3 24454 3333211 221 1 178899999999864
No 9
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=45.26 E-value=7.7 Score=45.32 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=28.4
Q ss_pred ceecccchhHHHHHHHhc---CCCCCeEEEecCCCeeeEEEe
Q psy12816 132 RAILSGPAGGLVGYATTS---PTTAPVIGFDMGGTSTDVSRY 170 (1453)
Q Consensus 132 ~~~~sgpa~g~~g~~~~~---~~~~~~i~~d~ggtstdv~~~ 170 (1453)
..+++-|.+..+.+.... .....++++|+||.|||+|++
T Consensus 181 ~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~ 222 (409)
T 4gni_A 181 LQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVL 222 (409)
T ss_dssp EEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEE
T ss_pred EEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEE
Confidence 456777888777765432 124569999999999999997
No 10
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=45.15 E-value=10 Score=47.14 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=31.5
Q ss_pred cceecccchhHHHHHHHhcCC-CCCeEEEecCCCeeeEEEec
Q psy12816 131 SRAILSGPAGGLVGYATTSPT-TAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~~-~~~~i~~d~ggtstdv~~~~ 171 (1453)
...+++-|.+..++|...... ...++++|+||.|||||++.
T Consensus 165 v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~ 206 (605)
T 4b9q_A 165 VKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIE 206 (605)
T ss_dssp EEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEE
T ss_pred eEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 345778898888887654322 45799999999999999983
No 11
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=43.89 E-value=12 Score=45.47 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=30.5
Q ss_pred cceecccchhHHHHHHHhcCCCCCeEEEecCCCeeeEEEec
Q psy12816 131 SRAILSGPAGGLVGYATTSPTTAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~~~~~~i~~d~ggtstdv~~~~ 171 (1453)
...+++=|.+..++|.........++++|+||.|||+|++.
T Consensus 139 ~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~ 179 (509)
T 2v7y_A 139 VERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILE 179 (509)
T ss_dssp EEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEE
T ss_pred eEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 34467778887777654333346799999999999999873
No 12
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=42.28 E-value=14 Score=42.49 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=27.4
Q ss_pred ecccchhHHHHHHHhc---CCCCCeEEEecCCCeeeEEEec
Q psy12816 134 ILSGPAGGLVGYATTS---PTTAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 134 ~~sgpa~g~~g~~~~~---~~~~~~i~~d~ggtstdv~~~~ 171 (1453)
++.=|.|..+++..-. .....++++|+||.||||+++.
T Consensus 168 li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~ 208 (346)
T 2fsj_A 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTIN 208 (346)
T ss_dssp EEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEE
T ss_pred EEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEE
Confidence 4566788888872211 1125689999999999999995
No 13
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=40.24 E-value=24 Score=43.66 Aligned_cols=28 Identities=32% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCCeEEEecCCCeeeEEEe-cCeeeEEE
Q psy12816 151 TTAPVIGFDMGGTSTDVSRY-YRELEHVF 178 (1453)
Q Consensus 151 ~~~~~i~~d~ggtstdv~~~-~~~~~~~~ 178 (1453)
..-++..+||||=|||+|+| .|.+.+..
T Consensus 405 ~eLGvaiIDmGGGTTd~sVf~~G~lv~a~ 433 (610)
T 2d0o_A 405 TTRPLAILDLGAGSTDASIINPKGDIIAT 433 (610)
T ss_dssp CCSSEEEEEECSSEEEEEEECTTCCEEEE
T ss_pred CcCCeEEEEeCCCcceEEEEcCCcEEEEE
Confidence 36789999999999999999 56666554
No 14
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=40.12 E-value=24 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCeeeEEEe-cCeeeEEE
Q psy12816 152 TAPVIGFDMGGTSTDVSRY-YRELEHVF 178 (1453)
Q Consensus 152 ~~~~i~~d~ggtstdv~~~-~~~~~~~~ 178 (1453)
.-++..+||||=|||+|+| .|.+.+..
T Consensus 408 elGvaiIDmGgGTTd~sVf~~g~lv~a~ 435 (607)
T 1nbw_A 408 AAPLAILDLGAGSTDAAIVNAEGQITAV 435 (607)
T ss_dssp CSSEEEEEECSSEEEEEEECSSSCEEEE
T ss_pred cCCeEEEEeCCCcceEEEEcCCcEEEEE
Confidence 6789999999999999999 56665554
No 15
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=39.34 E-value=11 Score=43.57 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=28.8
Q ss_pred ceecccchhHHHHHHHhcC-CCCCeEEEecCCCeeeEEEec
Q psy12816 132 RAILSGPAGGLVGYATTSP-TTAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 132 ~~~~sgpa~g~~g~~~~~~-~~~~~i~~d~ggtstdv~~~~ 171 (1453)
..+++=|.+..+++..... ....++++|+||.|||++++.
T Consensus 166 ~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~ 206 (383)
T 1dkg_D 166 KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (383)
T ss_dssp SCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEE
T ss_pred EEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEE
Confidence 3467778777776653321 235799999999999999884
No 16
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=37.95 E-value=11 Score=46.95 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=30.3
Q ss_pred cceecccchhHHHHHHHhcC-CCCCeEEEecCCCeeeEEEec
Q psy12816 131 SRAILSGPAGGLVGYATTSP-TTAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 131 ~~~~~sgpa~g~~g~~~~~~-~~~~~i~~d~ggtstdv~~~~ 171 (1453)
...++.=|.+..++|..-.. ....++++|+||.|||||++.
T Consensus 165 v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~ 206 (605)
T 2kho_A 165 VKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (605)
T ss_dssp EEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEE
T ss_pred eEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 34567778888777654322 245699999999999999983
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=36.29 E-value=22 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=32.1
Q ss_pred CceEEEEeccCCccceEEeCCCCceEEEEecCC-CCC---------CCCchHHHHHHHhcc
Q psy12816 4 GKFNFAIDRGGTFTDVFAICPDGKQCVMKLLSV-SPE---------YPDAPTEGIRRILQQ 54 (1453)
Q Consensus 4 ~~~~~~idrggtftd~~~~~~~g~~~~~klls~-~p~---------~~da~~~gir~~l~~ 54 (1453)
.++-+.||.|.|..=++... +|+..+.+.-.. -|. -.++..+.||++++.
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~ 71 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLE 71 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHH
Confidence 45678999999998866654 666444322111 121 124678999999986
No 18
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=35.88 E-value=21 Score=39.34 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.4
Q ss_pred HHHHHcCCCcEEEcCCCchHHHhccc
Q psy12816 440 SVARSLGISSVYTHRYAGILSAFGMA 465 (1453)
Q Consensus 440 ~lA~~Lgi~~Vvip~~agvlsA~G~~ 465 (1453)
.+.+.||.+ +++|+++...-|+|.+
T Consensus 225 ~l~~~~g~~-~~~p~~p~~~~A~GAA 249 (276)
T 4ehu_A 225 AMAREINTE-IIVPDIPQLTGALGAA 249 (276)
T ss_dssp HHHHHHTSC-EECCSSGGGHHHHHHH
T ss_pred HHHHHHCCC-eeeCCCcchHHHHHHH
Confidence 567888875 8899999888888874
No 19
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=34.48 E-value=23 Score=38.70 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=25.5
Q ss_pred cChh--HHHHHHHHHHcCCCcEEEcCCCchHHHhcccc
Q psy12816 431 GGAG--GQHACSVARSLGISSVYTHRYAGILSAFGMAC 466 (1453)
Q Consensus 431 GGag--~~ha~~lA~~Lgi~~Vvip~~agvlsA~G~~~ 466 (1453)
||++ +...-.+.+.||++ |.+|..+-...|+|.++
T Consensus 234 GG~a~~~~l~~~l~~~l~~~-v~~~~~p~~a~a~Gaal 270 (272)
T 3h1q_A 234 GGTAYLTGFSEEFSRFLGKE-VQVPIHPLLVTPLGIAL 270 (272)
T ss_dssp SGGGGSTTHHHHHHHHHSSC-CBCCSSGGGHHHHHHHT
T ss_pred CCccchhhHHHHHHHHhCCC-ccccCChHHHHHHHHHh
Confidence 4444 34556788889985 77788888888888754
No 20
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=33.44 E-value=70 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=19.4
Q ss_pred hhhccCCC--cchhhHhHHhhCcceeec
Q psy12816 362 LACFGGAG--GQHACSVARSLGISSVGT 387 (1453)
Q Consensus 362 l~~fggag--gqha~~~a~~l~~~~~~~ 387 (1453)
++++|++| |+-|+.+|+.+|. +|+.
T Consensus 150 VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~ 176 (324)
T 3nx4_A 150 VVVTGASGGVGSTAVALLHKLGY-QVAA 176 (324)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTC-CEEE
T ss_pred EEEECCCcHHHHHHHHHHHHcCC-EEEE
Confidence 66777656 7899999999999 4544
No 21
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=32.68 E-value=21 Score=43.83 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=28.7
Q ss_pred ceecccchhHHHHHHHhcC--CCCCeEEEecCCCeeeEEEec
Q psy12816 132 RAILSGPAGGLVGYATTSP--TTAPVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 132 ~~~~sgpa~g~~g~~~~~~--~~~~~i~~d~ggtstdv~~~~ 171 (1453)
..+++=|.+..++|..-.. ....++++|+||.|||||++.
T Consensus 170 ~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~ 211 (554)
T 1yuw_A 170 LRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILT 211 (554)
T ss_dssp EEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEE
T ss_pred EEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEE
Confidence 4566778777766643221 135699999999999999873
No 22
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=31.61 E-value=22 Score=40.70 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=25.6
Q ss_pred ecChhHHHHHHHHHHcCCCcEEEcCCCchHHHhccc
Q psy12816 430 FGGAGGQHACSVARSLGISSVYTHRYAGILSAFGMA 465 (1453)
Q Consensus 430 fGGag~~ha~~lA~~Lgi~~Vvip~~agvlsA~G~~ 465 (1453)
.||++-+..-.+.+.++++ |.+...|-...|.|..
T Consensus 285 tGGGA~l~~~~l~~~~~~~-v~v~~~P~~a~a~G~~ 319 (329)
T 4apw_A 285 IGGTTQKLKEQISKTYPNN-SIITNNSQWTTCEGLY 319 (329)
T ss_dssp ESTTHHHHHHHHHHHSTTC-EECCSSGGGHHHHHHH
T ss_pred ECChHHHHHHHHHHHcCCC-CEecCCChhhHHHHHH
Confidence 4666667777888888875 7777777777777753
No 23
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=28.79 E-value=75 Score=34.81 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=31.6
Q ss_pred eEEEEeccCCccceEEeCCCCceEEEEecCCCCCCCCchHHHHHHHhcc
Q psy12816 6 FNFAIDRGGTFTDVFAICPDGKQCVMKLLSVSPEYPDAPTEGIRRILQQ 54 (1453)
Q Consensus 6 ~~~~idrggtftd~~~~~~~g~~~~~klls~~p~~~da~~~gir~~l~~ 54 (1453)
+-..||.|+|.||++..+.+|++..-...+. -..++.+.+.++++++.
T Consensus 2 ~~lGID~GsT~tk~av~d~~~~il~~~~~~~-g~~~e~a~~vl~~~~~~ 49 (276)
T 4ehu_A 2 YTMGLDIGSTASKGVILKNGEDIVASETISS-GTGTTGPSRVLEKLYGK 49 (276)
T ss_dssp EEEEEEECSSCEEEEEEETTTEEEEEEEESC-CTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCccEEEEEEEECCCeEEEEEEecC-CCCHHHHHHHHHHHHHH
Confidence 4578999999999888886666554444332 12445566666666654
No 24
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=27.70 E-value=39 Score=37.67 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=15.7
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
+|++|+|||+|.+.+++
T Consensus 2 ~lgiDiGGT~~~~~l~d 18 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK 18 (291)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEeCccceEEEEEe
Confidence 68999999999999995
No 25
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=26.34 E-value=1.3e+02 Score=33.62 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=21.4
Q ss_pred chhhhccCCC--cchhhHhHHhhCcceeec
Q psy12816 360 HILACFGGAG--GQHACSVARSLGISSVGT 387 (1453)
Q Consensus 360 h~l~~fggag--gqha~~~a~~l~~~~~~~ 387 (1453)
..++++||+| |+-|+.+|+.+|.+ |++
T Consensus 154 ~~vlV~Ga~G~vG~~a~q~a~~~Ga~-vi~ 182 (321)
T 3tqh_A 154 DVVLIHAGAGGVGHLAIQLAKQKGTT-VIT 182 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCE-EEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCE-EEE
Confidence 4577888777 79999999999995 443
No 26
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=23.86 E-value=39 Score=37.69 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.2
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
+|++|+|||+|.+.+++
T Consensus 2 ~lgiDiGGT~i~~~l~d 18 (291)
T 1zxo_A 2 ILIADSGSTKTDWCVVL 18 (291)
T ss_dssp --CEECCTTCEEEEEEC
T ss_pred EEEEEeccccEEEEEEc
Confidence 58999999999999995
No 27
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=23.09 E-value=1.3e+02 Score=34.61 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=21.3
Q ss_pred chhhhccCCC--cchhhHhHHhhCcceeec
Q psy12816 360 HILACFGGAG--GQHACSVARSLGISSVGT 387 (1453)
Q Consensus 360 h~l~~fggag--gqha~~~a~~l~~~~~~~ 387 (1453)
..++++|++| |+-|+.+|+.+|.+ |+.
T Consensus 166 ~~VlV~Ga~G~vG~~a~qla~~~Ga~-Vi~ 194 (371)
T 3gqv_A 166 VYVLVYGGSTATATVTMQMLRLSGYI-PIA 194 (371)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCE-EEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCE-EEE
Confidence 4567788776 89999999999995 443
No 28
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=22.52 E-value=64 Score=33.50 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCCcCcchhhhhccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHH
Q psy12816 232 QGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEINKFYKDNNIPKVLSIEEVALGFI 303 (1453)
Q Consensus 232 gg~~t~tDa~~~lg~~~p~~f~~~~g~~~~~~ld~~~a~~a~~~la~~~~~~~~~~~~~~~~s~ee~A~g~~ 303 (1453)
|..+|.||+-++--++-+ .+...||.+.=.+|+++||++.- ++++++|+.+.|.
T Consensus 54 gk~~T~tdvDiiF~KvK~---------k~~rkI~f~qF~~aL~~lA~kr~---------kg~~~~e~~~~i~ 107 (151)
T 1wlm_A 54 GKAVTGTDVDIVFSKVKA---------KSARVINYEEFKKALEELATKRF---------KGKSKEEAFDAIC 107 (151)
T ss_dssp SSSSCHHHHHHHHHHHSC---------SSCSEEEHHHHHHHHHHTHHHHS---------SSCCHHHHHHHHH
T ss_pred CCCCChhhcceehheecc---------CccceecHHHHHHHHHHHHHHHc---------CCCCHHHHHHHHH
Confidence 456999999999888752 34677999999999999998752 2589998775543
No 29
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=21.85 E-value=47 Score=36.92 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCCCCccchhhhcCCc-cchhhhHHHHHhCCceEeecCCccccccccccc
Q psy12816 937 EEGTREAFALLTKEARGYDTQDHILACFGGA-GGQHACSVARSLGISSVYTHRYAGILSAFGMAC 1000 (1453)
Q Consensus 937 ~e~A~~Ai~~ia~~~rG~DPrdf~LvafGGA-GplhA~~lA~~LGi~~ViVP~~agv~SA~G~l~ 1000 (1453)
+...+.....+....++.++.+-.++..|++ -+.....+++.||.+ |++|+++....|+|+++
T Consensus 189 ~av~e~Va~~i~~~~~~~~~~~~i~~~GG~a~n~~~~~~~~~~lg~~-v~~p~~~~~~~AlGAAl 252 (270)
T 1hux_A 189 AGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGLGVE-IKTSPLAQYNGALGAAL 252 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSEEEESGGGGCHHHHHHHHHHHCSC-EECCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEeCccccCHHHHHHHHHHHCCC-eEeCCCcchHhHHHHHH
No 30
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=20.77 E-value=1.3e+02 Score=30.42 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCcCcchhhhhccccCCCCCccccCCCCCCCCCHHHHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHH
Q psy12816 232 QGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEINKFYKDNNIPKVLSIEEVALGFI 303 (1453)
Q Consensus 232 gg~~t~tDa~~~lg~~~p~~f~~~~g~~~~~~ld~~~a~~a~~~la~~~~~~~~~~~~~~~~s~ee~A~g~~ 303 (1453)
|..+|.||+-++--++ + .+...||.+.=.+|+++||++--+. ..++++|+-+.|.
T Consensus 59 gk~iT~TdvDIiF~Kv-~---------k~~r~I~f~qF~~aL~~lA~~k~~g-------~~~~~~e~l~~ik 113 (125)
T 1pul_A 59 NKAITGTMTGIAFSKV-T---------GPKKKATFDETKKVLAFVAEDRARQ-------SKKPIQDELDAIT 113 (125)
T ss_dssp SSSSCHHHHHHHHHHH-T---------CSSSCCCHHHHHHHHHHHHHHHHHH-------HTCCHHHHHHHHH
T ss_pred CCCCCccccceeehcc-c---------CCcceecHHHHHHHHHHHHHHhccC-------CCCCHHHHHHHHH
Confidence 4568999999987775 2 3567899999999999999876210 1268888665544
Done!