Query psy12816
Match_columns 1453
No_of_seqs 630 out of 2418
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 20:32:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bupa2 c.55.1.1 (A:189-381) H 73.4 0.6 4.4E-05 46.8 2.1 19 152-170 4-22 (193)
2 d1jcea2 c.55.1.1 (A:141-336) P 73.4 1.1 7.9E-05 43.9 4.0 21 153-173 7-28 (196)
3 d1dkgd2 c.55.1.1 (D:186-383) H 68.3 0.97 7.1E-05 45.7 2.3 19 153-171 3-21 (198)
4 d2ewsa1 c.55.1.14 (A:1-267) Ty 64.9 0.87 6.4E-05 46.2 1.1 17 156-172 3-19 (267)
5 d2zgya2 c.55.1.1 (A:158-320) P 59.7 2.3 0.00017 40.6 3.0 38 427-464 119-158 (163)
6 d1zc6a1 c.55.1.5 (A:8-121) Pro 59.1 3.3 0.00024 37.5 4.0 19 153-171 4-22 (114)
7 d1huxa_ c.55.1.5 (A:) Hydroxyg 58.3 3.2 0.00023 41.8 4.1 17 155-171 4-20 (259)
8 d1huxa_ c.55.1.5 (A:) Hydroxyg 58.2 4.7 0.00034 40.5 5.4 48 6-54 3-50 (259)
9 d1woqa1 c.55.1.10 (A:11-139) I 56.5 2.9 0.00021 38.4 3.1 19 153-171 2-20 (129)
10 d2aa4a1 c.55.1.10 (A:1-119) N- 55.3 4.6 0.00034 36.7 4.3 21 154-174 2-24 (119)
11 d2fsja1 c.55.1.12 (A:165-325) 51.9 3.1 0.00023 39.7 2.5 24 152-175 5-29 (161)
12 d1zc6a1 c.55.1.5 (A:8-121) Pro 51.1 6.7 0.00049 35.3 4.6 28 4-31 3-30 (114)
13 d1e4ft2 c.55.1.1 (T:200-390) C 50.8 4.9 0.00036 39.9 4.0 24 154-177 8-32 (191)
14 d1q18a1 c.55.1.7 (A:2-111) Glu 50.0 5.6 0.0004 35.7 3.8 19 153-171 2-20 (110)
15 d2ap1a2 c.55.1.10 (A:1-117) Pu 47.6 6.6 0.00048 35.4 3.9 17 155-171 2-18 (117)
16 d1iz0a2 c.2.1.1 (A:99-269) Qui 46.9 8.6 0.00063 37.3 5.0 28 360-387 29-58 (171)
17 d2gupa1 c.55.1.10 (A:1-114) Hy 46.5 6.5 0.00047 35.8 3.7 18 154-171 2-19 (114)
18 d2ch5a2 c.55.1.5 (A:1-117) N-a 44.6 7.2 0.00052 35.8 3.7 48 5-52 3-53 (117)
19 d2aa4a1 c.55.1.10 (A:1-119) N- 43.9 9.4 0.00068 34.5 4.4 48 7-54 3-51 (119)
20 d1xc3a1 c.55.1.10 (A:1-118) Pu 43.3 8.5 0.00062 34.9 4.0 17 155-171 2-18 (118)
21 d2ap1a2 c.55.1.10 (A:1-117) Pu 43.0 8 0.00058 34.7 3.8 45 8-53 3-48 (117)
22 d2ch5a2 c.55.1.5 (A:1-117) N-a 34.8 15 0.0011 33.6 4.2 17 155-171 5-21 (117)
23 d1zbsa2 c.55.1.5 (A:1-107) Hyp 29.3 22 0.0016 31.9 4.4 17 155-171 2-18 (107)
24 d1woqa1 c.55.1.10 (A:11-139) I 27.9 22 0.0016 32.0 4.2 47 7-53 4-53 (129)
25 d2ewsa1 c.55.1.14 (A:1-267) Ty 26.9 15 0.0011 36.5 2.9 26 7-33 2-27 (267)
26 d1bupa1 c.55.1.1 (A:4-188) Hea 25.0 31 0.0022 33.5 4.9 71 154-246 2-73 (185)
27 d1yb5a2 c.2.1.1 (A:121-294) Qu 24.1 30 0.0022 33.0 4.5 28 360-387 30-59 (174)
28 d2gupa1 c.55.1.10 (A:1-114) Hy 23.1 33 0.0024 30.7 4.4 47 8-55 4-50 (114)
29 d1nbwa3 c.55.1.6 (A:406-607) A 23.0 30 0.0022 34.4 4.1 24 152-175 3-28 (202)
30 d1q18a1 c.55.1.7 (A:2-111) Glu 22.1 27 0.002 30.9 3.4 49 5-55 2-51 (110)
31 d2zgya2 c.55.1.1 (A:158-320) P 21.8 26 0.0019 32.7 3.4 45 955-999 112-159 (163)
32 d2d0oa3 c.55.1.6 (A:404-606) D 21.5 33 0.0024 34.0 4.1 21 152-172 3-23 (203)
33 d1u6za3 c.55.1.8 (A:136-312) E 21.2 37 0.0027 32.4 4.5 23 153-175 2-25 (177)
34 d1xc3a1 c.55.1.10 (A:1-118) Pu 20.4 36 0.0026 30.4 4.0 44 8-53 3-46 (118)
No 1
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=73.42 E-value=0.6 Score=46.81 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=17.3
Q ss_pred CCCeEEEecCCCeeeEEEe
Q psy12816 152 TAPVIGFDMGGTSTDVSRY 170 (1453)
Q Consensus 152 ~~~~i~~d~ggtstdv~~~ 170 (1453)
.++|+++||||.|||+|++
T Consensus 4 e~~VlV~D~GggT~Dvsv~ 22 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSIL 22 (193)
T ss_dssp CEEEEEEEECSSCEEEEEE
T ss_pred CcEEEEEEeCCCeEEEEEE
Confidence 4679999999999999987
No 2
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=73.37 E-value=1.1 Score=43.89 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.1
Q ss_pred CCeEEEecCCCeeeEEEe-cCe
Q psy12816 153 APVIGFDMGGTSTDVSRY-YRE 173 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~-~~~ 173 (1453)
..+++||+||-|||||++ .|.
T Consensus 7 ~gvlV~DiGGGT~Dvsi~~~g~ 28 (196)
T d1jcea2 7 SGNMVVDIGGGTTEVAVISLGS 28 (196)
T ss_dssp SCEEEEEECSSCEEEEEEETTE
T ss_pred CceEEEEcCCCcEEEEEEEcCC
Confidence 468999999999999998 454
No 3
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=68.28 E-value=0.97 Score=45.68 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCeEEEecCCCeeeEEEec
Q psy12816 153 APVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~~ 171 (1453)
.+|++|||||.|||+|++.
T Consensus 3 ~~vlV~D~GggT~Dvsv~~ 21 (198)
T d1dkgd2 3 RTIAVYDLGGGTFDISIIE 21 (198)
T ss_dssp EEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEEcCCCcEEEEEEE
Confidence 3689999999999999973
No 4
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}
Probab=64.88 E-value=0.87 Score=46.17 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.5
Q ss_pred EEEecCCCeeeEEEecC
Q psy12816 156 IGFDMGGTSTDVSRYYR 172 (1453)
Q Consensus 156 i~~d~ggtstdv~~~~~ 172 (1453)
|++|+|||+|.+++++.
T Consensus 3 iGIDiGGT~ik~~lvd~ 19 (267)
T d2ewsa1 3 VGIDAGGTLIKIVQEQD 19 (267)
T ss_dssp EEEEECSSEEEEEEECS
T ss_pred EEEEEChhhEEEEEEeC
Confidence 79999999999999953
No 5
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}
Probab=59.69 E-value=2.3 Score=40.56 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=24.8
Q ss_pred EEEecChhHHHHHHHHHHcCCC--cEEEcCCCchHHHhcc
Q psy12816 427 LACFGGAGGQHACSVARSLGIS--SVYTHRYAGILSAFGM 464 (1453)
Q Consensus 427 L~afGGag~~ha~~lA~~Lgi~--~Vvip~~agvlsA~G~ 464 (1453)
++..||++.+..-.+-+.++.. +|+++..|=...|.|+
T Consensus 119 iil~GGGs~ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~ 158 (163)
T d2zgya2 119 VMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGM 158 (163)
T ss_dssp EEEESTTHHHHHHHHHHTSCCCGGGEECCSCGGGHHHHHH
T ss_pred EEEECchHHHHHHHHHHHhCCCCCCeEECCCcHhHHHHHH
Confidence 4445666666666667767754 5777777666666665
No 6
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=59.14 E-value=3.3 Score=37.47 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCeEEEecCCCeeeEEEec
Q psy12816 153 APVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~~ 171 (1453)
+-+|++|.|||+|.+.+++
T Consensus 4 ~y~lGID~GGT~tk~~l~d 22 (114)
T d1zc6a1 4 RYLIGVDGGGTGTRIRLHA 22 (114)
T ss_dssp CEEEEEEECSSCEEEEEEE
T ss_pred cEEEEEEcCcceEEEEEEc
Confidence 4589999999999999995
No 7
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=58.31 E-value=3.2 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=16.0
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
+|++|.|||+|++++++
T Consensus 4 ~lGIDiGGT~~k~~vvd 20 (259)
T d1huxa_ 4 TLGIDVGSTASKCIILK 20 (259)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEeCcceEEEEEEc
Confidence 68999999999999995
No 8
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=58.22 E-value=4.7 Score=40.45 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=34.9
Q ss_pred eEEEEeccCCccceEEeCCCCceEEEEecCCCCCCCCchHHHHHHHhcc
Q psy12816 6 FNFAIDRGGTFTDVFAICPDGKQCVMKLLSVSPEYPDAPTEGIRRILQQ 54 (1453)
Q Consensus 6 ~~~~idrggtftd~~~~~~~g~~~~~klls~~p~~~da~~~gir~~l~~ 54 (1453)
+.+.||.|||.|+++..+.+|+++-.+.... +.-++.+++-|..+|+.
T Consensus 3 ~~lGIDiGGT~~k~~vvd~~g~il~~~~~~t-~~~~~~~~~~i~~~l~~ 50 (259)
T d1huxa_ 3 YTLGIDVGSTASKCIILKDGKEIVAKSLVAV-GTGTSGPARSISEVLEN 50 (259)
T ss_dssp EEEEEEECSSEEEEEEEETTTEEEEEEEEEC-CSSCCHHHHHHHHHHHH
T ss_pred EEEEEEeCcceEEEEEEcCCCcEEEEEEecC-CCCHHHHHHHHHHHHHH
Confidence 5688999999999999999998764443332 22345677888877764
No 9
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=56.51 E-value=2.9 Score=38.45 Aligned_cols=19 Identities=42% Similarity=0.657 Sum_probs=17.5
Q ss_pred CCeEEEecCCCeeeEEEec
Q psy12816 153 APVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~~ 171 (1453)
+++|++|+|||++.+++++
T Consensus 2 ~~vlGiDiGgT~i~~~l~d 20 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVD 20 (129)
T ss_dssp CCEEEEEECSSEEEEEEEE
T ss_pred CCEEEEEECcceEEEEEEE
Confidence 5799999999999999984
No 10
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=55.29 E-value=4.6 Score=36.74 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.8
Q ss_pred CeEEEecCCCeeeEEEec--Cee
Q psy12816 154 PVIGFDMGGTSTDVSRYY--REL 174 (1453)
Q Consensus 154 ~~i~~d~ggtstdv~~~~--~~~ 174 (1453)
.+|++|+|||++.+++++ |+.
T Consensus 2 ~~lgiDiGgT~i~~~l~d~~G~i 24 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGADGQI 24 (119)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE
T ss_pred eEEEEEeCcCEEEEEEEcCCCCE
Confidence 479999999999999994 554
No 11
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=51.92 E-value=3.1 Score=39.74 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCCeEEEecCCCeeeEEEe-cCeee
Q psy12816 152 TAPVIGFDMGGTSTDVSRY-YRELE 175 (1453)
Q Consensus 152 ~~~~i~~d~ggtstdv~~~-~~~~~ 175 (1453)
...++++|+||.|||++++ .+...
T Consensus 5 ~g~~lviDIG~gTtDi~v~~~~~~~ 29 (161)
T d2fsja1 5 PGYGVVIDVGSRTTDVLTINLMDME 29 (161)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTTE
T ss_pred CCcEEEEEcCcCeEEEEEEECCCeE
Confidence 4569999999999999998 45543
No 12
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=51.14 E-value=6.7 Score=35.34 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.5
Q ss_pred CceEEEEeccCCccceEEeCCCCceEEE
Q psy12816 4 GKFNFAIDRGGTFTDVFAICPDGKQCVM 31 (1453)
Q Consensus 4 ~~~~~~idrggtftd~~~~~~~g~~~~~ 31 (1453)
.+|-+.||-|||-|-++..+.+|++.-.
T Consensus 3 m~y~lGID~GGT~tk~~l~d~~G~il~~ 30 (114)
T d1zc6a1 3 IRYLIGVDGGGTGTRIRLHASDGTPLAM 30 (114)
T ss_dssp CCEEEEEEECSSCEEEEEEETTCCEEEE
T ss_pred ccEEEEEEcCcceEEEEEEcCCCCEEEE
Confidence 4699999999999999999999987643
No 13
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}
Probab=50.83 E-value=4.9 Score=39.94 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.1
Q ss_pred CeEEEecCCCeeeEEEe-cCeeeEE
Q psy12816 154 PVIGFDMGGTSTDVSRY-YRELEHV 177 (1453)
Q Consensus 154 ~~i~~d~ggtstdv~~~-~~~~~~~ 177 (1453)
-++.+|||+.|||++++ +|.+.+.
T Consensus 8 Gv~vvDiG~~tt~i~i~~~G~l~~~ 32 (191)
T d1e4ft2 8 GVVVVNLGYNFTGLIAYKNGVPIKI 32 (191)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEEEECCeEEEE
Confidence 48999999999999998 6776544
No 14
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=50.01 E-value=5.6 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.9
Q ss_pred CCeEEEecCCCeeeEEEec
Q psy12816 153 APVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~~ 171 (1453)
+-++++|+|||++-+++++
T Consensus 2 ~~~L~~DIGGTn~r~alv~ 20 (110)
T d1q18a1 2 KYALVGDVGGTNARLALCD 20 (110)
T ss_dssp CEEEEEEECSSEEEEEEEE
T ss_pred cEEEEEEECchhEEEEEEE
Confidence 3589999999999999994
No 15
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=47.57 E-value=6.6 Score=35.36 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.4
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
.|++|+|||++.+++++
T Consensus 2 yiGiDiGgT~i~~~l~d 18 (117)
T d2ap1a2 2 YYGFDIGGTKIALGVFD 18 (117)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEECcceEEEEEEe
Confidence 48999999999999994
No 16
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}
Probab=46.87 E-value=8.6 Score=37.29 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred chhhhccCCC--cchhhHhHHhhCcceeec
Q psy12816 360 HILACFGGAG--GQHACSVARSLGISSVGT 387 (1453)
Q Consensus 360 h~l~~fggag--gqha~~~a~~l~~~~~~~ 387 (1453)
..++++|++| ||-|+.+|+.+|++-|.+
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~ 58 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAA 58 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeccccchhhhhhhhcccccccccc
Confidence 3466677544 699999999999975554
No 17
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=46.54 E-value=6.5 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=16.4
Q ss_pred CeEEEecCCCeeeEEEec
Q psy12816 154 PVIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 154 ~~i~~d~ggtstdv~~~~ 171 (1453)
.++++|+|||++-+++++
T Consensus 2 ~i~~iDiGgT~i~~~l~d 19 (114)
T d2gupa1 2 TIATIDIGGTGIKFASLT 19 (114)
T ss_dssp CEEEEEEETTEEEEEEEC
T ss_pred eEEEEEeCcccEEEEEEc
Confidence 478999999999999995
No 18
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.65 E-value=7.2 Score=35.82 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=33.6
Q ss_pred ceEEEEeccCCccceEEeCCCCceE-EEEecCCCCC--CCCchHHHHHHHh
Q psy12816 5 KFNFAIDRGGTFTDVFAICPDGKQC-VMKLLSVSPE--YPDAPTEGIRRIL 52 (1453)
Q Consensus 5 ~~~~~idrggtftd~~~~~~~g~~~-~~klls~~p~--~~da~~~gir~~l 52 (1453)
+.-+.||-|||-|+++..+.+|+.. ..+.-+.||. ..|...+-|+..+
T Consensus 3 ~~~~GIDgGGTkT~~~l~d~~G~~l~~~~~g~~N~~~~~~~~~~~~i~~~i 53 (117)
T d2ch5a2 3 AIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMV 53 (117)
T ss_dssp CEEEEEEECTTCEEEEEEETTSCEEEEEEECCCCHHHHCHHHHHHHHHHHH
T ss_pred cEEEEEEcChhhEEEEEECCCCCEEEEEEcCCCCcchhhHHHHHHHHHHHH
Confidence 4778999999999999999999865 4565566663 3344444444433
No 19
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=43.86 E-value=9.4 Score=34.55 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=32.9
Q ss_pred EEEEeccCCccceEEeCCCCceEEEEecCCCCC-CCCchHHHHHHHhcc
Q psy12816 7 NFAIDRGGTFTDVFAICPDGKQCVMKLLSVSPE-YPDAPTEGIRRILQQ 54 (1453)
Q Consensus 7 ~~~idrggtftd~~~~~~~g~~~~~klls~~p~-~~da~~~gir~~l~~ 54 (1453)
-+.||.|||.+-+...+.+|++...+-.-.+.+ .+++-.+-|.++++.
T Consensus 3 ~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~~~~~~~~~~~~i~~~i~~ 51 (119)
T d2aa4a1 3 TLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSP 51 (119)
T ss_dssp EEEEEECSSEEEEEEECTTCCEEEEEEEECCSSCCHHHHHHHHHHHHTT
T ss_pred EEEEEeCcCEEEEEEEcCCCCEEEeEEEeccccCcHHHHHHHHHHHHHH
Confidence 679999999999999999999764433221112 445556667766653
No 20
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=43.28 E-value=8.5 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=15.7
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
++++|+|||++.+++++
T Consensus 2 ~~giDiGgT~i~~~l~d 18 (118)
T d1xc3a1 2 LGGIEAGGTKFVCAVGR 18 (118)
T ss_dssp EEEEEECSSEEEEEEEC
T ss_pred EEEEEeccCEEEEEEEc
Confidence 68999999999999995
No 21
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=42.99 E-value=8 Score=34.75 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=32.9
Q ss_pred EEEeccCCccceEEeCCCCceEEEEecCCCCC-CCCchHHHHHHHhc
Q psy12816 8 FAIDRGGTFTDVFAICPDGKQCVMKLLSVSPE-YPDAPTEGIRRILQ 53 (1453)
Q Consensus 8 ~~idrggtftd~~~~~~~g~~~~~klls~~p~-~~da~~~gir~~l~ 53 (1453)
+.||.|||.+-+...+.+|++...+-+. .|+ -.++.++.|..+++
T Consensus 3 iGiDiGgT~i~~~l~d~~g~i~~~~~~~-t~~~~~~~~~~~i~~~i~ 48 (117)
T d2ap1a2 3 YGFDIGGTKIALGVFDSTRRLQWEKRVP-TPHTSYSAFLDAVCELVE 48 (117)
T ss_dssp EEEEECSSEEEEEEEETTCCEEEEEEEE-CCCSCHHHHHHHHHHHHH
T ss_pred EEEEECcceEEEEEEeCCCCEEEEEEEe-ecccCHHHHHHHHHHHHH
Confidence 7899999999999999999987665444 244 33455666666664
No 22
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.77 E-value=15 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.5
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
.+++|-|||+|++.+++
T Consensus 5 ~~GIDgGGTkT~~~l~d 21 (117)
T d2ch5a2 5 YGGVEGGGTRSEVLLVS 21 (117)
T ss_dssp EEEEEECTTCEEEEEEE
T ss_pred EEEEEcChhhEEEEEEC
Confidence 68999999999999984
No 23
>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}
Probab=29.26 E-value=22 Score=31.86 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=14.3
Q ss_pred eEEEecCCCeeeEEEec
Q psy12816 155 VIGFDMGGTSTDVSRYY 171 (1453)
Q Consensus 155 ~i~~d~ggtstdv~~~~ 171 (1453)
+|++|-|||.||..+++
T Consensus 2 ilivDgGgTKT~~vl~d 18 (107)
T d1zbsa2 2 ILIGDSGSTKTDWCIAK 18 (107)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEeccccEEEEEEC
Confidence 57899999999986663
No 24
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=27.89 E-value=22 Score=32.04 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=30.6
Q ss_pred EEEEeccCCccceEEeCCC-CceEE--EEecCCCCCCCCchHHHHHHHhc
Q psy12816 7 NFAIDRGGTFTDVFAICPD-GKQCV--MKLLSVSPEYPDAPTEGIRRILQ 53 (1453)
Q Consensus 7 ~~~idrggtftd~~~~~~~-g~~~~--~klls~~p~~~da~~~gir~~l~ 53 (1453)
-+.||.|||.+-+...+.+ |+++. .++.+..+..+++-.+.|++++.
T Consensus 4 vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~~~~~~~~~~~~i~~~~~ 53 (129)
T d1woqa1 4 LIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVA 53 (129)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEECcceEEEEEEECCCCEEEEEEeecccccCCCHHHHHHHHHHHHH
Confidence 4789999999998887765 55443 23333233355666677777665
No 25
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}
Probab=26.92 E-value=15 Score=36.48 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.1
Q ss_pred EEEEeccCCccceEEeCCCCceEEEEe
Q psy12816 7 NFAIDRGGTFTDVFAICPDGKQCVMKL 33 (1453)
Q Consensus 7 ~~~idrggtftd~~~~~~~g~~~~~kl 33 (1453)
++.||.|||+|-++..+.+|+. ..|.
T Consensus 2 kiGIDiGGT~ik~~lvd~~g~i-~~~~ 27 (267)
T d2ewsa1 2 KVGIDAGGTLIKIVQEQDNQRT-FKTE 27 (267)
T ss_dssp EEEEEECSSEEEEEEECSSCEE-EEEE
T ss_pred EEEEEEChhhEEEEEEeCCCcE-EEEE
Confidence 4789999999999999977765 4553
No 26
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.03 E-value=31 Score=33.45 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=43.6
Q ss_pred CeEEEecCCCeeeEEEe-cCeeeEEEeeeeeccEEEeccccceeEeecCCCceEEEeCCeEEEcccccCCCCCCcccccC
Q psy12816 154 PVIGFDMGGTSTDVSRY-YRELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFVVGPESAGALPGPRCYRNQ 232 (1453)
Q Consensus 154 ~~i~~d~ggtstdv~~~-~~~~~~~~~~~~v~~~~~~~~~~~i~tv~aGggS~~~~~~g~~~vgP~saga~PGPacy~~g 232 (1453)
++||+|-|.|.+=||.+ +|+++...... +-+ .+| |++.|.++...||...... +.+.
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~---~~r-~~P------------s~i~~~~~~~~vG~~a~~~------~~~~ 59 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQ---GNR-TTP------------SYVAFTDTERLIGDAAKNQ------VAMN 59 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTT---SCS-SEE------------CCEEECSSCEEETHHHHTT------TTTC
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCC---CCc-cce------------eEEEECCCcEEEeechHHH------hhcC
Confidence 79999999999999998 67765543221 111 122 6777776666678643111 1111
Q ss_pred CCcCcchhhhhccc
Q psy12816 233 GPLTITDCNLVLGR 246 (1453)
Q Consensus 233 g~~t~tDa~~~lg~ 246 (1453)
..-|+.|...+||+
T Consensus 60 p~~~i~~~KrllG~ 73 (185)
T d1bupa1 60 PTNTVFDAKRLIGR 73 (185)
T ss_dssp GGGEECCHHHHTTC
T ss_pred cccchhHHHHHhCC
Confidence 12467788888886
No 27
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.06 E-value=30 Score=32.99 Aligned_cols=28 Identities=36% Similarity=0.739 Sum_probs=20.0
Q ss_pred chhhhccCCC--cchhhHhHHhhCcceeec
Q psy12816 360 HILACFGGAG--GQHACSVARSLGISSVGT 387 (1453)
Q Consensus 360 h~l~~fggag--gqha~~~a~~l~~~~~~~ 387 (1453)
..+++.|++| |+-++.+|+.+|++.|.+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~ 59 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGT 59 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeccccccccccccccccCcccccc
Confidence 3566677544 688888999999875555
No 28
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=23.12 E-value=33 Score=30.70 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=33.9
Q ss_pred EEEeccCCccceEEeCCCCceEEEEecCCCCCCCCchHHHHHHHhccc
Q psy12816 8 FAIDRGGTFTDVFAICPDGKQCVMKLLSVSPEYPDAPTEGIRRILQQS 55 (1453)
Q Consensus 8 ~~idrggtftd~~~~~~~g~~~~~klls~~p~~~da~~~gir~~l~~~ 55 (1453)
.+||.|||.+=+-..+.+|+....+-.. .|+.-+.-++.|.++++..
T Consensus 4 ~~iDiGgT~i~~~l~d~~g~i~~~~~~~-t~~~~~~~~~~i~~~~~~~ 50 (114)
T d2gupa1 4 ATIDIGGTGIKFASLTPDGKILDKTSIS-TPENLEDLLAWLDQRLSEQ 50 (114)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEEEC-CCSSHHHHHHHHHHHHTTS
T ss_pred EEEEeCcccEEEEEEcCCCCEEEEEEEc-ccccHHHHHHHHHHHhhhc
Confidence 5899999999988888899877665444 4553355666777776543
No 29
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=23.01 E-value=30 Score=34.38 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCeeeEEEec--Ceee
Q psy12816 152 TAPVIGFDMGGTSTDVSRYY--RELE 175 (1453)
Q Consensus 152 ~~~~i~~d~ggtstdv~~~~--~~~~ 175 (1453)
..|+-..||||-|||.|+++ |+..
T Consensus 3 ~~plaIlDlG~GStDasii~~~g~v~ 28 (202)
T d1nbwa3 3 AAPLAILDLGAGSTDAAIVNAEGQIT 28 (202)
T ss_dssp CSSEEEEEECSSEEEEEEECSSSCEE
T ss_pred CCceEEEEcCCCccchhhccCCCcEE
Confidence 46889999999999999995 5543
No 30
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=22.14 E-value=27 Score=30.87 Aligned_cols=49 Identities=20% Similarity=0.066 Sum_probs=30.7
Q ss_pred ceEEEEeccCCccceEEeCCCCc-eEEEEecCCCCCCCCchHHHHHHHhccc
Q psy12816 5 KFNFAIDRGGTFTDVFAICPDGK-QCVMKLLSVSPEYPDAPTEGIRRILQQS 55 (1453)
Q Consensus 5 ~~~~~idrggtftd~~~~~~~g~-~~~~klls~~p~~~da~~~gir~~l~~~ 55 (1453)
||-..+|.|||-+=+=..+++|. +...+..+ +...+...+-|+.+++..
T Consensus 2 ~~~L~~DIGGTn~r~alv~~~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~ 51 (110)
T d1q18a1 2 KYALVGDVGGTNARLALCDIASGEISQAKTYS--GLDYPSLEAVIRVYLEEH 51 (110)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEE--GGGCSCHHHHHHHHHHHH
T ss_pred cEEEEEEECchhEEEEEEEcCCCeEEEEEeec--ccchhhHHHHHHHHHhhc
Confidence 69999999999997544455544 33333322 122345677788877643
No 31
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}
Probab=21.80 E-value=26 Score=32.69 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCccc-hhhhcCCccchhhhHHHHHhCCc--eEeecCCcccccccccc
Q psy12816 955 DTQDH-ILACFGGAGGQHACSVARSLGIS--SVYTHRYAGILSAFGMA 999 (1453)
Q Consensus 955 DPrdf-~LvafGGAGplhA~~lA~~LGi~--~ViVP~~agv~SA~G~l 999 (1453)
+..++ .++..||++.+....+-+..+.+ +++++++|-.++|.|+.
T Consensus 112 ~~~~~~~iil~GGGs~ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~ 159 (163)
T d2zgya2 112 EFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMY 159 (163)
T ss_dssp TCCCCCEEEEESTTHHHHHHHHHHTSCCCGGGEECCSCGGGHHHHHHH
T ss_pred cccccceEEEECchHHHHHHHHHHHhCCCCCCeEECCCcHhHHHHHHH
Confidence 44443 36667788888888888888764 69999999999999975
No 32
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=21.52 E-value=33 Score=34.00 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.3
Q ss_pred CCCeEEEecCCCeeeEEEecC
Q psy12816 152 TAPVIGFDMGGTSTDVSRYYR 172 (1453)
Q Consensus 152 ~~~~i~~d~ggtstdv~~~~~ 172 (1453)
..|+-..||||-|||.|+++.
T Consensus 3 ~~PlAIlDlGaGStDAsii~~ 23 (203)
T d2d0oa3 3 TRPLAILDLGAGSTDASIINP 23 (203)
T ss_dssp CSSEEEEEECSSEEEEEEECT
T ss_pred CCceEEEEcCCCcccHHHhCC
Confidence 468889999999999999943
No 33
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}
Probab=21.16 E-value=37 Score=32.41 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCeEEEecCCCeeeEEEe-cCeee
Q psy12816 153 APVIGFDMGGTSTDVSRY-YRELE 175 (1453)
Q Consensus 153 ~~~i~~d~ggtstdv~~~-~~~~~ 175 (1453)
.+.+++|+||-||-++.+ ++++.
T Consensus 2 gr~Lv~DIGGGStEl~~~~~~~~~ 25 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGENFEPI 25 (177)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEE
T ss_pred CCEEEEEeCCChhheEEEECCcEe
Confidence 368899999999999988 45543
No 34
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=20.36 E-value=36 Score=30.35 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=29.5
Q ss_pred EEEeccCCccceEEeCCCCceEEEEecCCCCCCCCchHHHHHHHhc
Q psy12816 8 FAIDRGGTFTDVFAICPDGKQCVMKLLSVSPEYPDAPTEGIRRILQ 53 (1453)
Q Consensus 8 ~~idrggtftd~~~~~~~g~~~~~klls~~p~~~da~~~gir~~l~ 53 (1453)
..||.|||.+-+.-.+.+|++.-++-.. .| .++..++-|.+.+.
T Consensus 3 ~giDiGgT~i~~~l~d~~g~i~~~~~~~-t~-~~~~~~~~i~~~~~ 46 (118)
T d1xc3a1 3 GGIEAGGTKFVCAVGREDGTIIDRIEFP-TK-MPDETIEKVIQYFS 46 (118)
T ss_dssp EEEEECSSEEEEEEECTTSCEEEEEEEE-CC-CHHHHHHHHHHHHT
T ss_pred EEEEeccCEEEEEEEcCCCCEEEEEEec-CC-CHHHHHHHHHHHHh
Confidence 5799999999999999999976544332 11 33445555555554
Done!