RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12816
(1453 letters)
>gnl|CDD|215358 PLN02666, PLN02666, 5-oxoprolinase.
Length = 1275
Score = 781 bits (2018), Expect = 0.0
Identities = 342/794 (43%), Positives = 447/794 (56%), Gaps = 110/794 (13%)
Query: 753 DQELLLGRIARDLGFAHVSLSHEVMPMVKIVARGNTT--------VIDAYLTPHIKQY-- 802
E +G++AR +GF VSLS ++PMV+ V RG+T VI YL+ + +
Sbjct: 205 AHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPVIKEYLSGFLSGFDD 264
Query: 803 --LTVSSTYFQHNGQCQAMST-------------NIYDYSSLQQGDKIVGPAI--IMNEL 845
V+ + Q +G S + Y+ G + P I M
Sbjct: 265 GLGDVNVLFMQSDGGLTPESRFSGHKAILSGPAGGVVGYAQTTFGLETEKPVIGFDMGGT 324
Query: 846 STIL------VEPNCEATI-NVT---GDIDIQTVAAGGGSMLFFRSGLFVVGPESAGALP 895
ST + E E V +DI TVAAGGGS L F+ G F VGPES GA P
Sbjct: 325 STDVSRYDGSYEQVLETQTAGVIIQAPQLDINTVAAGGGSKLKFQFGAFRVGPESVGAHP 384
Query: 896 GPRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTK------ 949
GP CYR G L +TD NLVLGR+IP+YFP+IFGPN+D+PLD E TR AF L
Sbjct: 385 GPVCYRKGGELAVTDANLVLGRVIPDYFPSIFGPNEDEPLDLEATRAAFEALAAQINSYR 444
Query: 950 -----------------------------------EARGYDTQDHILACFGGAGGQHACS 974
E +GY+T +H LACFGGAG QHAC+
Sbjct: 445 KSQDPSAKDMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGAGPQHACA 504
Query: 975 VARSLGISSVYTHRYAGILSAFGMACADVVHEEQEPCGKPYSPDEFDYFVDRLVALSQKS 1034
+AR+LG+S V+ HRY GILSA+GM ADVV E QEP Y P+ R AL++K
Sbjct: 505 IARALGMSEVFVHRYCGILSAYGMGLADVVAEAQEPYAAVYGPESLAEASRREDALAEKV 564
Query: 1035 IAHFTSQGYPLATIRLMPYLHMRFQGTEGSLMCGPQVRVDPGLFDLLDSCLLTFRWSVRY 1094
QG+ I YL++R++GT+ ++M D D +
Sbjct: 565 RQKLQEQGFREDNITTETYLNLRYEGTDTAIMVAEPENGDGSDGDYAAA--------FVK 616
Query: 1095 RYKEEYGFVL-NKPIVVDDVRVRGLATLETSTQPRD-----KSLTLESVSSTYFQHNGQC 1148
++ EYGF L N+ I++DDVRVRG+ E + YF++
Sbjct: 617 LFRREYGFKLQNRDILIDDVRVRGIGVTNILKPLPLDAASGGLPEPERTTKVYFENGWH- 675
Query: 1149 QAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEAIINVTGDIEIAVDI------ 1202
T +Y +L G +I GPAIIMN ST++VEP C+AI+ G+I+I V+
Sbjct: 676 ---DTPVYKLENLGPGHEIPGPAIIMNGNSTVVVEPGCKAIVTKYGNIKIEVENSAEQSA 732
Query: 1203 SSTSCHIDTHLDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGL 1262
T + D +QLSIF+HRFM IAEQMGR LQRT+ STNIKERLDFSCALFGPDGGL
Sbjct: 733 EETVKAAEKKADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGL 792
Query: 1263 VSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFIDS 1322
V+NAPH+PVHLG+M V++Q+++ N +G V+++NHP+AGGSHLPD+TVITPVF D
Sbjct: 793 VANAPHVPVHLGAMSSTVRWQLEYWGENLNEGDVLVTNHPQAGGSHLPDITVITPVFRDG 852
Query: 1323 QPVEEGPVFFVANRGHHADIGGLTPGSMPPHSQKLTEEGAVFESFDIVRDGEFQEAAVTA 1382
+ VFFVA+RGHHADIGG+TPGSMPP S+ + EEGA ++F +V G FQE +T
Sbjct: 853 K-----IVFFVASRGHHADIGGITPGSMPPFSKTIWEEGAAIKAFKLVEGGVFQEEGITK 907
Query: 1383 QLMEP---AKYPGCSGTRNLPDNLADLKAQIAANQKGISLVQDVIQLYGLPVVQAYMKHI 1439
L P P GTR L DNL+DL+AQ+AANQ+GISL++++I YGL VQAYM H+
Sbjct: 908 LLQAPGSDETAPKIPGTRRLQDNLSDLRAQVAANQRGISLIKELIDEYGLGTVQAYMGHV 967
Query: 1440 QTNAEHSVRDLLKQ 1453
Q NAE +VR++LK
Sbjct: 968 QANAELAVREMLKS 981
Score = 406 bits (1044), Expect = e-119
Identities = 163/291 (56%), Positives = 194/291 (66%), Gaps = 37/291 (12%)
Query: 99 SFCKGFENNLQGVNVLFMQSDGGLTPMESFIGSRAILSGPAGGLVGYATTS---PTTAPV 155
F GF++ L VNVLFMQSDGGLTP F G +AILSGPAGG+VGYA T+ T PV
Sbjct: 257 GFLSGFDDGLGDVNVLFMQSDGGLTPESRFSGHKAILSGPAGGVVGYAQTTFGLETEKPV 316
Query: 156 IGFDMGGTSTDVSRYYRELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFVV 215
IGFDMGGTSTDVSRY E V E T AG+ +Q PQLDI TVAAGGGS L F+ G F V
Sbjct: 317 IGFDMGGTSTDVSRYDGSYEQVLE-TQTAGVIIQAPQLDINTVAAGGGSKLKFQFGAFRV 375
Query: 216 GPESAGALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFAL 275
GPES GA PGP CYR G L +TD NLVLGR+IP+YFP+IFGPN+D+PLD E TR AF
Sbjct: 376 GPESVGAHPGPVCYRKGGELAVTDANLVLGRVIPDYFPSIFGPNEDEPLDLEATRAAFEA 435
Query: 276 LTKEINKFYKDNNI-PKVLSIEEVALGFINVADETMCRPIRAVTQVSGRPDKVYLSGLSE 334
L +IN + K + K +S+EEVALGF+ VA+E MCRPIR +T++
Sbjct: 436 LAAQINSYRKSQDPSAKDMSVEEVALGFVRVANEAMCRPIRQLTEM-------------- 481
Query: 335 SEYLDNTRPNSFFYPSQARGYDTQDHILACFGGAGGQHACSVARSLGISSV 385
+GY+T +H LACFGGAG QHAC++AR+LG+S V
Sbjct: 482 ------------------KGYETANHALACFGGAGPQHACAIARALGMSEV 514
Score = 379 bits (975), Expect = e-110
Identities = 152/342 (44%), Positives = 206/342 (60%), Gaps = 16/342 (4%)
Query: 415 SQARGYDTQDHILACFGGAGGQHACSVARSLGISSVYTHRYAGILSAFGMACADVVHEEQ 474
++ +GY+T +H LACFGGAG QHAC++AR+LG+S V+ HRY GILSA+GM ADVV E Q
Sbjct: 479 TEMKGYETANHALACFGGAGPQHACAIARALGMSEVFVHRYCGILSAYGMGLADVVAEAQ 538
Query: 475 EPCGKPYSPDEFDYFVDRLVSLSQKSIAHFTSQGYPLSTIRLMPYLHMRFQGTEGSLMCG 534
EP Y P+ R +L++K QG+ I YL++R++GT+ ++M
Sbjct: 539 EPYAAVYGPESLAEASRREDALAEKVRQKLQEQGFREDNITTETYLNLRYEGTDTAIMVA 598
Query: 535 PQVRVDPDSCLLTFRWSVRYRYKEEYGFVL-NKPIVVDDVRVRGLATLETSTQPRD---K 590
D + + ++ EYGF L N+ I++DDVRVRG+
Sbjct: 599 EPENGDGSDG--DYAAAFVKLFRREYGFKLQNRDILIDDVRVRGIGVTNILKPLPLDAAS 656
Query: 591 SLTLESVGVSSTYFQHNGQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEA 650
E + YF++ T +Y +L G +I GPAIIMN ST++VEP C+A
Sbjct: 657 GGLPEPERTTKVYFENGWH----DTPVYKLENLGPGHEIPGPAIIMNGNSTVVVEPGCKA 712
Query: 651 IINVTGDIEIAVDI------SSTSCHIDTHLDPIQLSIFSHRFMSIAEQMGRVLQRTAHS 704
I+ G+I+I V+ T + D +QLSIF+HRFM IAEQMGR LQRT+ S
Sbjct: 713 IVTKYGNIKIEVENSAEQSAEETVKAAEKKADVVQLSIFNHRFMGIAEQMGRTLQRTSIS 772
Query: 705 TNIKERLDFSCALFGPDGGLVSNAPHIPVHLGSMQEAVKFQV 746
TNIKERLDFSCALFGPDGGLV+NAPH+PVHLG+M V++Q+
Sbjct: 773 TNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSSTVRWQL 814
Score = 87.1 bits (216), Expect = 6e-17
Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 3 SGKFNFAIDRGGTFTDVFAICPDGKQC-VMKLLSVSP-EYPDAPTEGIRRILQQ 54
S KF F IDRGGTFTDV+A P G V+KLLSV P Y DAP EGIRRIL++
Sbjct: 7 SRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSVDPANYDDAPREGIRRILEE 60
>gnl|CDD|223224 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 305 bits (783), Expect = 1e-90
Identities = 115/243 (47%), Positives = 159/243 (65%), Gaps = 16/243 (6%)
Query: 1213 LDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNAPHIPVH 1272
+DPI L +F++ FM+IAE+MG LQRTA S NIKERLDFSCA+F +G LV+ APHIPVH
Sbjct: 2 MDPITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLDFSCAIFDAEGNLVAQAPHIPVH 61
Query: 1273 LGSMQEAVKFQIDHRKGN--FKKGSVILSNHPKAGGSHLPDLTVITPVFIDSQPVEEGPV 1330
LGSM +VK I + K N + G V ++N P GG+HLPD+T++TPVF + +
Sbjct: 62 LGSMSVSVKAMIRNNKENPDLEPGDVFITNDPYIGGTHLPDVTLVTPVF-----HDGKLI 116
Query: 1331 FFVANRGHHADIGGLTPGSMPPHSQKLTEEGAVFESFDIVRDGEFQEAAVTAQLMEPAKY 1390
+VANRGHHADIGG+TPGSM P + ++ +EG +V++GEF+E + L+ +
Sbjct: 117 GYVANRGHHADIGGITPGSMSPGATEIFQEGLRIPPVKLVKNGEFREDILRI-LLRNVRT 175
Query: 1391 PGCSGTRNLPDNLADLKAQIAANQKGISLVQDVIQLYGLPVVQAYMKHIQTNAEHSVRDL 1450
P N+ DLKAQIAAN KG V+++I YGL V+ MK + AE +VR +
Sbjct: 176 P--------DYNIGDLKAQIAANLKGRRRVRELIDEYGLDTVEEAMKEVIEYAERAVRAV 227
Query: 1451 LKQ 1453
+++
Sbjct: 228 IRK 230
Score = 131 bits (331), Expect = 2e-31
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 675 LDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNAPHIPVH 734
+DPI L +F++ FM+IAE+MG LQRTA S NIKERLDFSCA+F +G LV+ APHIPVH
Sbjct: 2 MDPITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLDFSCAIFDAEGNLVAQAPHIPVH 61
Query: 735 LGSMQEAVKFQV 746
LGSM +VK +
Sbjct: 62 LGSMSVSVKAMI 73
>gnl|CDD|217092 pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family
includes N-methylhydaintoinase B which converts hydantoin
to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9
which catalyzes the formation of L-glutamate from
5-oxo-L-proline. These enzymes are part of the
oxoprolinase family and are related to pfam01968.
Length = 527
Score = 293 bits (753), Expect = 6e-87
Identities = 122/239 (51%), Positives = 159/239 (66%), Gaps = 10/239 (4%)
Query: 1214 DPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNAPHIPVHL 1273
DPI L IF + F SIAE+MG VL+ TA S NIKERLDFSCALF +G LV+NAPHIPVHL
Sbjct: 2 DPILLEIFKNLFSSIAEEMGTVLRNTAASPNIKERLDFSCALFDANGNLVANAPHIPVHL 61
Query: 1274 GSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGGSHLPDLTVITPVFIDSQPVEEGPVFFV 1333
GSM +VK + +G + G V + N P GG+HLPD+TVITP+F G +F+V
Sbjct: 62 GSMGTSVKEMVKLWEGGIEPGDVYIVNDPYIGGTHLPDITVITPIFYS-----GGLIFYV 116
Query: 1334 ANRGHHADIGGLTPGSMPPHSQKLTEEGAVFESFDIVRDGEFQEAAVTAQLMEPAKYPGC 1393
A+R HHAD+GG+TPGSMPP+S+++ +EG + +V++GEF E + + YP
Sbjct: 117 ASRAHHADVGGITPGSMPPNSKEIFQEGYIIPPELLVKNGEFNEELIRQLFVR-NPYP-- 173
Query: 1394 SGTRNLPDNLADLKAQIAANQKGISLVQDVIQLYGLPVVQAYMKHIQTNAEHSVRDLLK 1452
+RN N+ DLKAQIAANQKGI + +I YGL V YM HIQ NAE +++ +
Sbjct: 174 --SRNPECNIGDLKAQIAANQKGIDRIGKLIDEYGLETVLGYMAHIQDNAEEAIKRKIA 230
Score = 124 bits (312), Expect = 3e-29
Identities = 49/71 (69%), Positives = 55/71 (77%)
Query: 676 DPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNAPHIPVHL 735
DPI L IF + F SIAE+MG VL+ TA S NIKERLDFSCALF +G LV+NAPHIPVHL
Sbjct: 2 DPILLEIFKNLFSSIAEEMGTVLRNTAASPNIKERLDFSCALFDANGNLVANAPHIPVHL 61
Query: 736 GSMQEAVKFQV 746
GSM +VK V
Sbjct: 62 GSMGTSVKEMV 72
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 236 bits (605), Expect = 3e-70
Identities = 115/303 (37%), Positives = 139/303 (45%), Gaps = 61/303 (20%)
Query: 102 KGFENNLQ----GVNVLFMQSDGGLTPMESFIG--SRAILSGPAGGLVGYATTSPTTAPV 155
+G E+ L+ + MQSDGGL +E ILSGPA G+VG A T
Sbjct: 20 EGVEDALKERGIKAPLYVMQSDGGLMSIEEARRKPVETILSGPAAGVVGAAYTLAGLKNA 79
Query: 156 IGFDMGGTSTDVSRYYR-ELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSML-FFRSGLF 213
I DMGGTSTDVS E E E G P ++P LDI+TV AGGGS++ G
Sbjct: 80 IVVDMGGTSTDVSLIIDGEPEISSEGEVVGGYPTRVPMLDIRTVGAGGGSIVVVDDGGKL 139
Query: 214 VVGPESAGALPGPRCYRNQG-PLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREA 272
VGPESAGA PGP CY G PLT+TD NLVLGR+ PE F FGP + +E E
Sbjct: 140 RVGPESAGADPGPACYGKGGEPLTVTDANLVLGRLNPEDFLGGFGPLAGEAAEEADLAEV 199
Query: 273 FALLTKEINKFYKDNNIPKVLSIEEVALGFINVADETMCRPIRAVTQVSGRPDKVYLSGL 332
LS+EEVA G + +A+ETM +R ++
Sbjct: 200 ------------------LGLSVEEVAEGILRIANETMADAVRLLS-------------- 227
Query: 333 SESEYLDNTRPNSFFYPSQARGYDTQDHILACFGGAGGQHACSVARSLGISSVGTPN--Q 390
RG D +D L FGGAG HA +A LGI V P
Sbjct: 228 ------------------VERGLDPRDFPLVVFGGAGPLHAPELAEELGIKEVIPPPYPG 269
Query: 391 VAC 393
VA
Sbjct: 270 VAN 272
Score = 168 bits (428), Expect = 2e-46
Identities = 91/289 (31%), Positives = 118/289 (40%), Gaps = 70/289 (24%)
Query: 785 RGNTTVIDAYLTPHIKQYLTVSSTYFQH---NGQCQAMSTNIYDYSSLQQGDK------- 834
R T V++AYL P +++YL + M ++ L ++
Sbjct: 1 REVTAVLNAYLAPIMRRYLEGVEDALKERGIKAPLYVMQSD----GGLMSIEEARRKPVE 56
Query: 835 ---------IVGPAIIMNELSTILV----------------EPNCEATINVTGD------ 863
+VG A + L +V EP + V G
Sbjct: 57 TILSGPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVSLIIDGEPEISSEGEVVGGYPTRVP 116
Query: 864 -IDIQTVAAGGGSML-FFRSGLFVVGPESAGALPGPRCYRNQG-PLTITDCNLVLGRIIP 920
+DI+TV AGGGS++ G VGPESAGA PGP CY G PLT+TD NLVLGR+ P
Sbjct: 117 MLDIRTVGAGGGSIVVVDDGGKLRVGPESAGADPGPACYGKGGEPLTVTDANLVLGRLNP 176
Query: 921 EYFPAIFGPNKDQPLDEEGTRE---------AFALLTK-------------EARGYDTQD 958
E F FGP + +E E A +L RG D +D
Sbjct: 177 EDFLGGFGPLAGEAAEEADLAEVLGLSVEEVAEGILRIANETMADAVRLLSVERGLDPRD 236
Query: 959 HILACFGGAGGQHACSVARSLGISSVYTHRYAGILSAFGMACADVVHEE 1007
L FGGAG HA +A LGI V Y G+ +A G A ADV E
Sbjct: 237 FPLVVFGGAGPLHAPELAEELGIKEVIPPPYPGVANAVGAALADVRAEV 285
Score = 77.3 bits (191), Expect = 4e-15
Identities = 27/59 (45%), Positives = 31/59 (52%)
Query: 415 SQARGYDTQDHILACFGGAGGQHACSVARSLGISSVYTHRYAGILSAFGMACADVVHEE 473
S RG D +D L FGGAG HA +A LGI V Y G+ +A G A ADV E
Sbjct: 227 SVERGLDPRDFPLVVFGGAGPLHAPELAEELGIKEVIPPPYPGVANAVGAALADVRAEV 285
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 242 bits (620), Expect = 8e-68
Identities = 145/527 (27%), Positives = 213/527 (40%), Gaps = 104/527 (19%)
Query: 753 DQELLLGRIARDLGF-AHVSLSHEVMPMVKIVARGNTTVIDAYLTPHIKQYLTVSSTYFQ 811
+ EL + I R++G VSLSHEV P + R NT V++AYL+P +++YL +
Sbjct: 168 EHELRVAEIIREIGPDIPVSLSHEVSPEIGEYERANTAVLNAYLSPILRRYLEAVKDALK 227
Query: 812 HNG---QCQAMSTNIYDYSSLQQGDK----------------IVGPAIIMNELSTILV-- 850
G + M ++ L ++ +VG A + + +
Sbjct: 228 ERGIKARLMVMQSD----GGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVF 283
Query: 851 ---------------EPNCEATINVTGD-------IDIQTVAAGGGSMLFFR-SGLFVVG 887
EP + V G +DI+TVAAGGGS+++ G VG
Sbjct: 284 DMGGTSTDVALIIDGEPEISSETEVAGGYPTRVPMVDIRTVAAGGGSIVWVDEGGPLRVG 343
Query: 888 PESAGALPGPRCYRNQG-PLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFAL 946
P SAGA PGP CY G TITD NLVLGR+ P P + G D LD E REAF+
Sbjct: 344 PLSAGADPGPACYGRGGTEPTITDANLVLGRLQP---PVLLGG--DLKLDVELAREAFSE 398
Query: 947 LTKE------------------------------ARGYDTQDHILACFGGAGGQHACSVA 976
L + RGYD +D L FGGAG HA VA
Sbjct: 399 LEADIGGLIGEEVASGFIRLANLEMAGAIRKVTVERGYDPRDFTLIGFGGAGPLHALGVA 458
Query: 977 RSLGISSVYTHRYAGILSAFGMACADVVHEEQEPCGKPYSPDEFDYFVDRLVALSQKSIA 1036
LGI V Y G+ SA+GM AD+ E + + + + L +++I
Sbjct: 459 EELGIKRVIIPPYPGVFSAYGMLLADLRSELSKSVKQKLAEAALELIAFVFEMLEEEAIE 518
Query: 1037 HFTSQGYPLATIRLMPYLHMRFQGTEGSLMCGPQVRVDPGLFDLLDSCLLTFRWSVRYRY 1096
+ G+ IR++ +R+ G + ++L S R +
Sbjct: 519 ELLASGFSEEDIRVVRVAPVRY--------VGGGQDAEL---EVLKSDSEEIRAEFEEPH 567
Query: 1097 KEEYGFVL-NKPIVVDDVRVRGLATLETSTQPRDKSLTLESVSSTYFQHNGQC----QAM 1151
+ YG + +P V +RV + + P L F +
Sbjct: 568 EARYGNAVGARPGEVVAIRVEAIGPRDK---PVLSPLEEIERVFAPFLGYREAYFAGLWA 624
Query: 1152 STNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEAIINVTGDIEI 1198
T +Y+ L GD++ GPAII E STI+V P A ++V G + +
Sbjct: 625 ETPVYEREKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKGVLVL 671
Score = 235 bits (602), Expect = 2e-65
Identities = 118/291 (40%), Positives = 138/291 (47%), Gaps = 53/291 (18%)
Query: 104 FENNLQGVNVLFMQSDGGLTPMESFIG--SRAILSGPAGGLVGYA-TTSPTTAPVIGFDM 160
+ ++ MQSDGGL E ILSGPA G+VG A T I FDM
Sbjct: 226 LKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDM 285
Query: 161 GGTSTDVSRY-YRELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFR-SGLFVVGPE 218
GGTSTDV+ E E E+ A G P ++P +DI+TVAAGGGS+++ G VGP
Sbjct: 286 GGTSTDVALIIDGEPEISSETEVAGGYPTRVPMVDIRTVAAGGGSIVWVDEGGPLRVGPL 345
Query: 219 SAGALPGPRCYRNQG-PLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLT 277
SAGA PGP CY G TITD NLVLGR+ P P + G D LD E REAF+ L
Sbjct: 346 SAGADPGPACYGRGGTEPTITDANLVLGRLQP---PVLLGG--DLKLDVELAREAFSELE 400
Query: 278 KEINKFYKDNNIPKVLSIEEVALGFINVADETMCRPIRAVTQVSGRPDKVYLSGLSESEY 337
+I L EEVA GFI +A+ M IR VT
Sbjct: 401 ADIGG----------LIGEEVASGFIRLANLEMAGAIRKVT------------------- 431
Query: 338 LDNTRPNSFFYPSQARGYDTQDHILACFGGAGGQHACSVARSLGISSVGTP 388
RGYD +D L FGGAG HA VA LGI V P
Sbjct: 432 -------------VERGYDPRDFTLIGFGGAGPLHALGVAEELGIKRVIIP 469
Score = 138 bits (350), Expect = 2e-33
Identities = 69/281 (24%), Positives = 111/281 (39%), Gaps = 21/281 (7%)
Query: 386 GTPNQVACQVYLRVSIWITLGLHNSFFYPSQARGYDTQDHILACFGGAGGQHACSVARSL 445
+VA + + + + + RGYD +D L FGGAG HA VA L
Sbjct: 406 LIGEEVA---SGFIRLANL-EMAGAIRKVTVERGYDPRDFTLIGFGGAGPLHALGVAEEL 461
Query: 446 GISSVYTHRYAGILSAFGMACADVVHEEQEPCGKPYSPDEFDYFVDRLVSLSQKSIAHFT 505
GI V Y G+ SA+GM AD+ E + + + + L +++I
Sbjct: 462 GIKRVIIPPYPGVFSAYGMLLADLRSELSKSVKQKLAEAALELIAFVFEMLEEEAIEELL 521
Query: 506 SQGYPLSTIRLMPYLHMRFQGTEGSLMCGPQ--VRVDPDSCLLTFRWSVRYRYKEEYGFV 563
+ G+ IR++ +R+ G G Q S R ++ YG
Sbjct: 522 ASGFSEEDIRVVRVAPVRYVG-------GGQDAELEVLKSDSEEIRAEFEEPHEARYGNA 574
Query: 564 L-NKPIVVDDVRVRGLATLETSTQPRDK---SLTLESVGVSSTYFQHNGQCQAMSTNIYD 619
+ +P V +RV + + + + +G YF T +Y+
Sbjct: 575 VGARPGEVVAIRVEAIGPRDKPVLSPLEEIERVFAPFLGYREAYFAG----LWAETPVYE 630
Query: 620 YSSLQQGDKIVGPAIIMNELSTILVEPNCEAIINVTGDIEI 660
L GD++ GPAII E STI+V P A ++V G + +
Sbjct: 631 REKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKGVLVL 671
Score = 45.9 bits (109), Expect = 2e-04
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 8 FAIDRGGTFTDVFAICPDGKQ-CVMKLLSVSPEYPDAPTEGIRRIL 52
ID GGTFTD + DG +K+L+ GIR L
Sbjct: 5 IGIDVGGTFTDAVLLDEDGGVLATIKVLTTPDLPSGIVNAGIRLAL 50
Score = 38.1 bits (89), Expect = 0.038
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 821 TNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEATINVTGDIDIQ 867
T +Y+ L GD++ GPAII E STI+V P A ++V G + ++
Sbjct: 626 TPVYEREKLAGGDEVEGPAIIEEEDSTIVVPPGWAARVDVKGVLVLE 672
>gnl|CDD|218571 pfam05378, Hydant_A_N, Hydantoinase/oxoprolinase N-terminal
region. This family is found at the N-terminus of the
pfam01968 family.
Length = 175
Score = 58.8 bits (143), Expect = 1e-09
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 8 FAIDRGGTFTDVFAICPDGKQ-CVMKLLSVSPEYPDAPTEGIRRILQ 53
ID GGTFTD A+ +K+L+ PD P EGIR L+
Sbjct: 2 IGIDVGGTFTDAVALDEGDGVVATLKVLTT----PDDPLEGIRNALE 44
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 33.9 bits (78), Expect = 0.66
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 19/84 (22%)
Query: 650 AIINVTGDI----EIAVDISSTSCHID------THLDPIQLSIFSHRFMSIAEQMGRVLQ 699
AI + I V+++ ++D THL Q + SH +S EQ+ R
Sbjct: 138 AIDVIRKRIKTLQVALVELAEK--NVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAG 195
Query: 700 RTAHSTNIKERLDF----SCALFG 719
R + + R++F SCAL G
Sbjct: 196 RLV---DCRPRVNFCPLGSCALAG 216
Score = 33.9 bits (78), Expect = 0.66
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 19/84 (22%)
Query: 1188 AIINVTGDI----EIAVDISSTSCHID------THLDPIQLSIFSHRFMSIAEQMGRVLQ 1237
AI + I V+++ ++D THL Q + SH +S EQ+ R
Sbjct: 138 AIDVIRKRIKTLQVALVELAEK--NVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAG 195
Query: 1238 RTAHSTNIKERLDF----SCALFG 1257
R + + R++F SCAL G
Sbjct: 196 RLV---DCRPRVNFCPLGSCALAG 216
>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional.
Length = 208
Score = 31.0 bits (70), Expect = 3.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 260 KDQPLDEEGTREAFALL-TKEINKFYKDNNIPKVLS 294
+D+P+ E FA L T+EI + K N IP VLS
Sbjct: 99 EDEPIVEGAPAAYFATLPTREIVEELKKNGIPAVLS 134
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 31.0 bits (71), Expect = 3.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 672 DTHLDPIQLSIFSHRFMSIAEQMGRVLQR 700
THL Q + + A+ +GR L+R
Sbjct: 88 RTHLQDAQPVTLGYELRAWAQVLGRDLER 116
Score = 31.0 bits (71), Expect = 3.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1210 DTHLDPIQLSIFSHRFMSIAEQMGRVLQR 1238
THL Q + + A+ +GR L+R
Sbjct: 88 RTHLQDAQPVTLGYELRAWAQVLGRDLER 116
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 30.5 bits (69), Expect = 7.1
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 222 ALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEI- 280
A+PG + PLT + G P A+F PL+E E F L+T E+
Sbjct: 337 AIPGAKVLFGGKPLTNHSIPSIYGAYEPT---AVF-----VPLEEIAIEENFELVTTEVF 388
Query: 281 NKF-----YKDNNIPKVLSIEE 297
F YKD +P VL E
Sbjct: 389 GPFQVVTEYKDEQLPLVLEALE 410
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 30.5 bits (69), Expect = 8.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 687 FMSIAEQ----MGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNA 728
FM++ GRV++R H I E D+ AL GP+ G V NA
Sbjct: 130 FMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEV-NA 174
Score = 30.5 bits (69), Expect = 8.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 1225 FMSIAEQ----MGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNA 1266
FM++ GRV++R H I E D+ AL GP+ G V NA
Sbjct: 130 FMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEV-NA 174
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 29.6 bits (67), Expect = 9.4
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 157 GFDMGGTSTDV--SRYYRELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFV 214
G D+ G DV + L + + AA +PV I I A G G L L V
Sbjct: 59 GADLSG---DVYADDFPDALIEMLHAIDAAPVPV-IA--AINGPAIGAGLQLAMACDLRV 112
Query: 215 VGPESAGALP 224
V PE+ P
Sbjct: 113 VAPEAYFQFP 122
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 29.8 bits (68), Expect = 10.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 673 THLDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFS 714
THL Q + H + A ++ R L+R +RL+
Sbjct: 126 THLQDAQPTTLGHELAAWAAELERDLERLEE---ALKRLNVL 164
Score = 29.8 bits (68), Expect = 10.0
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 1211 THLDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFS 1252
THL Q + H + A ++ R L+R +RL+
Sbjct: 126 THLQDAQPTTLGHELAAWAAELERDLERLEE---ALKRLNVL 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 74,327,502
Number of extensions: 7448277
Number of successful extensions: 5989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5946
Number of HSP's successfully gapped: 48
Length of query: 1453
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1344
Effective length of database: 6,103,016
Effective search space: 8202453504
Effective search space used: 8202453504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.8 bits)