RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12816
(1453 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.3 bits (197), Expect = 4e-15
Identities = 88/686 (12%), Positives = 186/686 (27%), Gaps = 205/686 (29%)
Query: 247 IIPEYFPAIFGPNKDQPLD----EEGTREAFALLTKEINKFYK-DNNIPKVLSI------ 295
I+ + A + D ++ + + +EI+ + + L +
Sbjct: 21 ILSVFEDAFV---DN--FDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 296 --EEVALGFINVADET----MCRPIRAVTQVSGRPDKVYLSGLSESEYLDN--------T 341
EE+ F+ + PI+ + ++Y+ + Y DN +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVS 132
Query: 342 RPNSFFYPSQARG--YDTQDH-ILACFGGAG-GQH--ACSVARSLGISSVGTPNQVACQV 395
R + + R + + + G G G+ A V S + ++ ++
Sbjct: 133 RLQPY---LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-----KMDFKI 184
Query: 396 YLRVSIWITLGLHNS---FFYPSQARGYD-TQDHILACFGGAGGQHACSVA----RSLGI 447
+ W+ L NS Q Y + + + R L
Sbjct: 185 F-----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 448 SSVYTH--------RYAGILSAFGMAC-----------ADVV------HEEQEPCGKPYS 482
S Y + + A +AF ++C D + H + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 483 PDEFDYFVDRLVSLSQKSIAHFTSQGYPLSTIRLMPYLHMRFQGTEGSLMCGPQVRVDPD 542
PDE + SL K Q P + P + + +R
Sbjct: 300 PDE-------VKSLLLK-YLDCRPQDLPREVLTTNP-RRLS--------IIAESIRDGLA 342
Query: 543 SCLLTFRWSVRYRYKEEYGFVLNKPIVVDDVRVRGLATLETSTQPRDKSLTLESVGVSST 602
W +++ +K + + L LE P + + + V
Sbjct: 343 ------TWD-NWKHVN-----CDK---LTTIIESSLNVLE----PAEYRKMFDRLSV--- 380
Query: 603 YFQHNGQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEAIINVTGDIEIAV 662
F + +I P I+++ + +++ + ++N
Sbjct: 381 -FPPS-------AHI--------------PTILLSLIWFDVIKSDVMVVVN--------- 409
Query: 663 DISSTSCH----IDTHLDPIQLSIFSHRFMSIAEQMGRVLQRTAHSTNIKERLDFSCALF 718
H ++ +SI S + H + I + +
Sbjct: 410 -----KLHKYSLVEKQPKESTISIPSIYLELKVKLENE---YALHRS-IVDHYNIPKTFD 460
Query: 719 GPDGGLVSN----APHIPVHLGSMQEAVKFQVCKTKVHDQELLLGRIARDLGFAHVSLSH 774
D HI HL +++ + L + D F + H
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----------LFRMVFLDFRFLEQKIRH 509
Query: 775 EVMPMVKIVARGNTTVID-----AYLTPHIKQYLTVSSTY--FQHNGQCQAMSTNIY--D 825
+ + N T+ Y+ + +Y + + F + N+
Sbjct: 510 DSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDFLPK-----IEENLICSK 563
Query: 826 YSSLQQGDKIVGPAIIMNELSTILVE 851
Y+ L + +M E I E
Sbjct: 564 YTDLLR-------IALMAEDEAIFEE 582
Score = 65.3 bits (158), Expect = 1e-10
Identities = 89/684 (13%), Positives = 188/684 (27%), Gaps = 215/684 (31%)
Query: 670 HIDTHLDPIQ------LSIFSHRFMS------IAEQMGRVLQRT-----AHSTNIKERLD 712
H+D Q LS+F F+ + + +L + S +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 713 FSCALFGPDGGLVSNAPHIPVHLGSMQEAVKFQVCKTKVHDQELLLGRIA---RDLGFAH 769
LF L +E V+ V + + + L+ I R
Sbjct: 66 R---LFW-------------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 770 VSLSHEVMPM---VKIVARGNTTVIDAY---------LTPHI-----------KQYLTVS 806
+ + ++ A+ N + + Y L P K ++
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-AL 168
Query: 807 STYFQHNGQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEATINVTGDIDI 866
+ QC+ M I+ + +L+ + ++ +L + +PN + + + +I +
Sbjct: 169 DVCLSYKVQCK-MDFKIF-WLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKL 225
Query: 867 QTVAAGGGSMLFFRSGLFVVGPESAGALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPAI 926
+ + +S P C LVL
Sbjct: 226 RIHSIQAELRRLLKS------------KPYENCL------------LVL----------- 250
Query: 927 FGPNKDQPLDEEGTREAFA-----LLTKEARGYDTQDHILACF-GGAGGQHACSVARSLG 980
+ + AF LLT T+ + F A H S+
Sbjct: 251 -----LNVQNAK-AWNAFNLSCKILLT-------TRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 981 ISSVYTHRYA-GILSAF-GMACADVVHEEQE--P-----CGKPYS--PDEFDYF----VD 1025
T +L + D+ E P + +D + D
Sbjct: 298 ----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 1026 RLVALSQKSIAHFTS----QGYPLATIRLMPYLHMRFQGTEGS-----LMC---GPQVRV 1073
+L + + S+ + + ++ F + L+ ++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV---------FP--PSAHIPTILLSLIWFDVIKS 402
Query: 1074 DPGLF--DLLDSCLLTFRWSVRYRY-----------KEEYGFVLNKPIVVDDVRVRGLAT 1120
D + L L+ + K E + L++ IV + +
Sbjct: 403 DVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 1121 LETSTQPRDKSLTLESVSSTYF-QH---------NGQCQAMSTNIY-DYSSLQQGDKI-- 1167
+ D+ YF H + + + ++ D+ L+Q KI
Sbjct: 462 DDLIPPYLDQ----------YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRH 509
Query: 1168 -----VGPAIIMNELSTILV--------EPNCEAIINVTGDIEIAVDISSTSCHIDTHLD 1214
I+N L + +P E ++N I + + + D
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILDFLPKIEENLICSKYTD 566
Query: 1215 PIQLSIFSHRFMSIAEQMGRVLQR 1238
++++ +I E+ + +QR
Sbjct: 567 LLRIA-LMAEDEAIFEEAHKQVQR 589
Score = 52.5 bits (125), Expect = 1e-06
Identities = 80/704 (11%), Positives = 180/704 (25%), Gaps = 213/704 (30%)
Query: 744 FQVCKTKVHDQELL---LGRIARDLGFAHVS------LSHEVMPMVKIVARGNTT----- 789
F+ + + +++L + V LS E + I+ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVSGTLR 66
Query: 790 VIDAYLTPHIKQYLTVSSTYFQHN---------GQCQAMSTNIYDYSS----LQQGDKIV 836
+ L+ + + N + + S Y L +++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 837 GPAII-----MNELSTILVEPNCEATINVTGDIDIQTVAAGGG-SML------------F 878
+ +L L+E + + G G G + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-------LGSGKTWVALDVCLSYKVQCK 179
Query: 879 FRSGLFVVGPESAGALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEE 938
+F + + C + L + L+ +I P + + L
Sbjct: 180 MDFKIFWL---NLK-----NCNSPETVLEMLQ-KLLY-QIDPNWTSRSDHS-SNIKLRIH 228
Query: 939 GTREAFALLTKEARGY--------DTQD-HILACFGGAGGQHACSVARSLGISSVYTHRY 989
+ L K + Y + Q+ F +C + + T R+
Sbjct: 229 SIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFN-----LSCKI--------LLTTRF 274
Query: 990 AGILSAFGMACADVVHEEQEPCGKPYSPDEFDYFVDRLVALSQKSIAHFTSQGYPLATIR 1049
+ ++ A H + +PDE + + + + + P +
Sbjct: 275 KQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LS 331
Query: 1050 LMPYLHMRFQGTEGSLMCGPQVRVDPGLFDLLDSCLLTFRWSVRYRYKEEYGFVLNKPIV 1109
+ +R W +++ +
Sbjct: 332 ----------------IIAESIRDGLA------------TWD-NWKH-----------VN 351
Query: 1110 VDDVRVRGLATLETSTQPRDKSLTLESVSSTYFQHNGQCQAMSTNIY-DYSSLQQGDKIV 1168
D + +E+S L + ++ + S I
Sbjct: 352 CDKLT----TIIESS---------LNVLEPAEYRKM----------FDRLSVFPPSAHI- 387
Query: 1169 GPAIIMNELSTILVEPNCEAIINVTGDIEIAVDISSTSCH----IDTHLDPIQLSIFSHR 1224
P I+++ + +++ + ++N H ++ +SI S
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVN--------------KLHKYSLVEKQPKESTISIPSIY 432
Query: 1225 FMSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSN----APHIPVHLGSMQEAV 1280
+ H + I + + D HI HL +++
Sbjct: 433 LELKVKLENE---YALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 1281 KFQ------IDHRKGNFKKGSVILSNHP-KAGGSHLPDLTVIT---PVFIDSQPVEEGPV 1330
+ +D R F + + + A GS L L + P D+ P E V
Sbjct: 489 RMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 1331 F----FVANRGHHADIGGLTPGSMPPHSQKL-----TEEGAVFE 1365
F+ + ++ L E+ A+FE
Sbjct: 546 NAILDFLPKIEENLICS--------KYTDLLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 3e-11
Identities = 91/524 (17%), Positives = 152/524 (29%), Gaps = 168/524 (32%)
Query: 917 RIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEARGYDTQDHILACFGGAGGQHACSVA 976
+I Y A + P D++ AL G ++A F GGQ
Sbjct: 121 ELIKNYITARIMAKR--PFDKKSNS---ALFRAVGEG---NAQLVAIF---GGQ------ 163
Query: 977 RSLGISSVY-------THRYAGILSAFGMACADVVHE---EQEPCGKPYS---------- 1016
G + Y Y ++ A+ + E K ++
Sbjct: 164 ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 1017 -----PDEFDYFVDR-----LVALSQKSIAHFTSQGYPLATIRLMPYLHMRFQG-TEGSL 1065
PD+ DY + L+ + Q +AH+ + T +L+ + + +G+
Sbjct: 221 NPSNTPDK-DYLLSIPISCPLIGVIQ--LAHY------VVTAKLLGFTPGELRSYLKGAT 271
Query: 1066 MCGPQVRV---------DPGLFDLLDSCL-LTFRWSVRYRYKEEYGFVLNKPIVVDDVRV 1115
+ F + + + F + + R E Y P +++D
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-F-IGVRCYEAYPNTSLPPSILEDSLE 329
Query: 1116 RGLATLETSTQP----RDKSLTLESVSSTYFQHNGQCQAMSTNIYDYSSLQQGDKIVGPA 1171
E P + LT E V Q TN S L G ++
Sbjct: 330 NN----EGVPSPMLSISN--LTQEQV---------QDYVNKTN----SHLPAGKQV---E 367
Query: 1172 IIMNELSTILVEPNCEAIIN------VTGDIEIAVDISSTSCHIDTHLDPIQLSIFSHRF 1225
I +++N V+G P L +
Sbjct: 368 I---------------SLVNGAKNLVVSG-------------------PPQSLYGLNLTL 393
Query: 1226 MSIAEQMGRVLQRTAHSTNIKERLDFSCALFGPDGGLVSNAP-HIPVHLGSMQEAVKFQI 1284
G R S + +L FS F P V+ +P H L + + +
Sbjct: 394 RKAKAPSGLDQSRIPFS---ERKLKFS-NRFLP----VA-SPFHSH-LLVPASDLINKDL 443
Query: 1285 DHRKGNFKKGSVILSNHPKAGGSHLPDL-TVITPVFID---SQPVE-EGPVFFVANRGHH 1339
+F + + + GS L L I+ +D PV+ E F A H
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT--HI 501
Query: 1340 ADIGGLTPGSMPPHSQKLTE---EGA-----VFESFDIVRDGEF 1375
D G PG LT +G V + DI D ++
Sbjct: 502 LDFG---PGGASGLG-VLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 61.6 bits (149), Expect = 2e-09
Identities = 118/721 (16%), Positives = 213/721 (29%), Gaps = 279/721 (38%)
Query: 234 PLTITDCNLVLGRIIPE--YFPAIFGPNKDQPLDEEGTREAF-ALLTKEINKFYKDNNIP 290
PLT++ +L ++P +F A Q L +E F +L + F D+ P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIA------SQ-L-----QEQFNKILPEPTEGFAADDE-P 54
Query: 291 KVLSIEEVA---LGFI-NVADETMCRPIRAVTQVS-GRPDKVYLSG----------LSES 335
+ E+ LG++ ++ + + V + + YL G L E+
Sbjct: 55 T--TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 336 E------------YLD---------NTRPNSFFYPSQARGYDTQDHILACFGGAGGQHAC 374
+ Y+ + + NS + + G ++A F GGQ
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG---NAQLVAIF---GGQ--- 163
Query: 375 SVARSLGISSVGTPNQVACQVY---LRVSIWITLGLHNSFFYPSQARGYDTQDHILACFG 431
G + Y LR L Y T ++
Sbjct: 164 -----------GNTD-----DYFEELR-----DL--------------YQTYHVLVGDLI 188
Query: 432 GAGGQHACSVARS-LGISSVYTHRYAGILSAFGMACADVVH--EEQEPCGKPYSPDEFDY 488
+ + R+ L V+T G+ +++ E +PD+ DY
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQ---GL---------NILEWLENPSN-----TPDK-DY 230
Query: 489 FVDRLVS-----LSQKSIAHFTSQGYPLSTIRLMPYLHMRFQG-TEGSLMCGPQVRV--- 539
+ +S + Q +AH+ + T +L+ + + +G+ +
Sbjct: 231 LLSIPISCPLIGVIQ--LAHY------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 540 -----DPDSCLLTFRWSVRY------RYKEEYGFVLNKPIVVDDVRVRGLATLETSTQP- 587
+S ++ R ++ R E Y P +++D E P
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN----EGVPSPM 338
Query: 588 ---RDKSLTLESVGVSSTYFQHNGQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILV 644
+ LT E V Q TN S L G ++ I
Sbjct: 339 LSISN--LTQEQV-----------QDYVNKTN----SHLPAGKQV---EI---------- 368
Query: 645 EPNCEAIIN------VTGDIEIAVDISSTSCHIDTHLDPIQLSIFSHRFMSIAEQMGRVL 698
+++N V+G P L + G
Sbjct: 369 -----SLVNGAKNLVVSG-------------------PPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 699 QRTAHSTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGS--MQEAVKFQVCKTKVHDQEL 756
R S + +L FS F P V+ P H S + A
Sbjct: 405 SRIPFS---ERKLKFS-NRFLP----VA----SPFH--SHLLVPASD------------- 437
Query: 757 LLGRIARDLGFAHVSLSHE--VMPMVKIVARG-NTTVIDAYLTPHIKQYLTVSSTYFQHN 813
I +DL +VS + + +P V G + V+ ++ I + ++
Sbjct: 438 ---LINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE-- 491
Query: 814 GQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTI--LVEPNCEATINVTGDIDIQTVAA 871
Q +T+I D+ GP S + L N + TG ++ + A
Sbjct: 492 TTTQFKATHILDF----------GPG----GASGLGVLTHRNKDG----TG---VRVIVA 530
Query: 872 G 872
G
Sbjct: 531 G 531
Score = 58.9 bits (142), Expect = 1e-08
Identities = 83/436 (19%), Positives = 134/436 (30%), Gaps = 137/436 (31%)
Query: 1123 TSTQPRDKSLTLE--------SVSSTYFQHNGQCQA--MSTNIYDYSSLQQGDKIVGPAI 1172
ST+P LTL V + F Q Q D+ PA
Sbjct: 4 YSTRP----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA- 58
Query: 1173 IMNELS-------TILVEPN-----CEAIINVTGDIEIAV----DISSTSCHIDTHLDPI 1216
EL + LVEP+ + + + E DI + + + D
Sbjct: 59 ---ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 1217 QLSIFS--HRFMSIAEQMGRVLQRTAHS---TNIKE---RLDFSCALFGPDG-GLVSN-- 1265
+ +++ R + ++S + E +L A+FG G G +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL---VAIFG--GQGNTDDYF 170
Query: 1266 --------------APHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILS--NHPKAGGSHL 1309
I ++ E ++ +D K F +G IL +P S+
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENP----SNT 225
Query: 1310 PDLTVITPVFIDSQPVEEGPVFFVANRGHH---ADIGGLTPGSMPPHSQKLTEEG----- 1361
PD ++ S P+ P+ V H+ A + G TPG + + + T
Sbjct: 226 PDKD-----YLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 1362 AVF-------ESF-DIVRD--------G-EFQEA----AVTAQLMEPAKYPGCSGT---- 1396
AV ESF VR G EA ++ ++E + G
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-GVPSPM 338
Query: 1397 ---RNLPDNLADLKAQIAA-NQKG-------ISLV----QDVI-----QLYGLPV----V 1432
NL ++ + N ISLV V+ LYGL +
Sbjct: 339 LSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 1433 QAYMKHIQTNAEHSVR 1448
+A Q+ S R
Sbjct: 397 KAPSGLDQSRIPFSER 412
Score = 55.4 bits (133), Expect = 1e-07
Identities = 100/566 (17%), Positives = 161/566 (28%), Gaps = 220/566 (38%)
Query: 17 TDVFAICPDGKQCVMKLLS-----VSPEYPDAPTEGIRRILQQSFCKGFENN-LQGVNV- 69
T+ FA D +L+ VS + ++L FEN L+G ++
Sbjct: 45 TEGFAA-DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENCYLEGNDIH 102
Query: 70 -----LFMQSDGGLT------------------PMASFIGS---RAILSGPA------GG 97
L ++D L P S RA+ G A GG
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 98 LSFCKGFENNLQG-------------------VNVLFMQSDGGLTPM------ESFIGSR 132
QG V L S L+ + + ++
Sbjct: 163 -----------QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 133 AI-----LSGPAGGL-VGYATTSPTTAPVIGFDMGGTSTDVSRYYR----------ELEH 176
+ L P+ Y + P + P+IG ++ Y EL
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGV------IQLAHYVVTAKLLGFTPGELRS 265
Query: 177 VFESTS--AAGIPVQIPQLDIQTVAAGGGSMLFFRSG------LFVVGPESAGALPGPRC 228
+ + + G+ + +A FF S LF +G A P
Sbjct: 266 YLKGATGHSQGLVTAVA------IAETDSWESFFVSVRKAITVLFFIGVRCYEAYP---- 315
Query: 229 YRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEINKFYKDN- 287
P +I + +L +P +I ++Q + +NK N
Sbjct: 316 -NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-------------VQDYVNKT---NS 358
Query: 288 NIP--KVLSIEEVALGFINVAD--------------ETMCRPIRAVTQV-------SGRP 324
++P K + I +L +N A R +A + + S R
Sbjct: 359 HLPAGKQVEI---SL--VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 325 DKVYLSGL--SE---SEYL---------DNTRPNSFFYPSQARG--YDTQDHILACFGGA 368
K L + S L D + N F + YDT D
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--------- 464
Query: 369 GGQHACSVARSLGISSVGTPNQVACQVYLRVSIWITLGLHNSFFYPSQARGYDTQDHILA 428
G ++ S+ + V C + L V W T + F + HIL
Sbjct: 465 -GSDLRVLSGSI------SERIVDCIIRLPVK-WETT----TQFKAT---------HIL- 502
Query: 429 CFGGAGGQHACSVARSLGISSVYTHR 454
F G GG + G+ + THR
Sbjct: 503 DF-GPGG--------ASGLGVL-THR 518
Score = 43.1 bits (101), Expect = 8e-04
Identities = 47/272 (17%), Positives = 77/272 (28%), Gaps = 92/272 (33%)
Query: 815 QCQAMSTNIYDYSS-----LQQGDKIVGPAIIMNELSTILVEPNCEATINVTGDIDIQTV 869
Q Q M ++Y S + D + L ++ P TI+ G+ + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKG-KRI 1684
Query: 870 AAGGGSMLF--FRSGLFVVGPESAGALPGPRCYRNQGP---LTITDCNLVLGRIIPEYF- 923
+M+F G Y + L+ T F
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------------QFT 1732
Query: 924 -PAIFGPNKDQPLDEEGTRE--AFALLTKEARGYDTQDHILACFGGAGGQHACSVARSLG 980
PA+ E AF L +++G D A F AG H SLG
Sbjct: 1733 QPALT------------LMEKAAFEDL--KSKGLIPAD---ATF--AG--H------SLG 1765
Query: 981 ----ISSVYTHRYAGILSAF----------GMACADVVHEEQEPCGKPYS-----P---- 1017
++S+ A ++S GM V E Y P
Sbjct: 1766 EYAALASL-----ADVMS-IESLVEVVFYRGMTMQVAV-PRDELGRSNYGMIAINPGRVA 1818
Query: 1018 -----DEFDYFVDRLVALSQK--SIAHFTSQG 1042
+ Y V+R+ + I ++ +
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 43.1 bits (101), Expect = 8e-04
Identities = 55/320 (17%), Positives = 89/320 (27%), Gaps = 110/320 (34%)
Query: 1147 QCQAMSTNIYDYSS-----LQQGDKIVGPAIIMNELSTILVEPNCEAIINVTG------- 1194
Q Q M ++Y S + D + L ++ P I+ G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKGKRIR 1685
Query: 1195 ------DIEIAVDISSTSCHIDTHLDPIQLS-IFSHRFMSIAEQMGRVLQRTAHSTNIKE 1247
E VD + I ++ S F + G +L T T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-------EKG-LLSATQF-TQP-- 1734
Query: 1248 RLDFSCALFGPDGGLVSNAPHIPVHLGSMQEAVKFQIDHRKGNFKKGSVILSNHPKAGGS 1307
AL L+ A E +K KG + AG
Sbjct: 1735 ------ALT-----LMEKAAF---------EDLK-----SKGLIPADATF------AG-- 1761
Query: 1308 H-L---PDLTVITPVFIDSQPVEEGPVFFVANRG---HHA-----------DIGGLTPGS 1349
H L L + V +E V V RG A + + PG
Sbjct: 1762 HSLGEYAALASLADVM----SIESL-VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 1350 MPPHSQKLTEEGAVFESFDIVRDGEFQEAAVTAQLMEPAKY--PG----CSGT-RNLPDN 1402
+ + ++E A+ +V + T L+E Y +G R L D
Sbjct: 1817 V---AASFSQE-ALQY---VVE----RVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DT 1864
Query: 1403 LAD-LKAQIAANQKGISLVQ 1421
+ + L + I +++
Sbjct: 1865 VTNVLN---FIKLQKIDIIE 1881
Score = 40.0 bits (93), Expect = 0.006
Identities = 53/305 (17%), Positives = 82/305 (26%), Gaps = 115/305 (37%)
Query: 609 QCQAMSTNIYDYSS-----LQQGDKIVGPAIIMNELSTILVEPNCEAIINVTG------- 656
Q Q M ++Y S + D + L ++ P I+ G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKGKRIR 1685
Query: 657 ------DIEIAVDISSTSCHIDTHLDPIQLS-IFSHRFMSIAEQMGRVLQRTAHSTNIKE 709
E VD + I ++ S F + G +L T T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-------EKG-LLSATQF-TQP-- 1734
Query: 710 RLDFSCALFGPDGGLVSNAPHIPVHLGSMQEAVKFQVCKTKVHDQELLLGRIARDLGFA- 768
AL L+ A F+ K+K G I D FA
Sbjct: 1735 ------ALT-----LMEKAA--------------FEDLKSK--------GLIPADATFAG 1761
Query: 769 H--------VSLSHEVMP---MVKIV-ARGNTTVIDAYLTPHIKQYLTVSSTYFQHNGQC 816
H SL+ +VM +V++V RG + V+ +
Sbjct: 1762 HSLGEYAALASLA-DVMSIESLVEVVFYRG--------------MTMQVAVPRDELGRSN 1806
Query: 817 QAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCEATINVTGDI---------DIQ 867
M + P + S ++ E TG + + Q
Sbjct: 1807 YGMIA--------------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 868 TVAAG 872
VAAG
Sbjct: 1853 YVAAG 1857
Score = 37.3 bits (86), Expect = 0.043
Identities = 39/253 (15%), Positives = 67/253 (26%), Gaps = 88/253 (34%)
Query: 997 GM---------ACADVVHEEQEPCGKPYSPDEFDYFVDRLVALSQKSIA-HFTSQGYPLA 1046
GM A DV + + D + + + +V + ++ HF G
Sbjct: 1630 GMGMDLYKTSKAAQDVWNR-----ADNHFKDTYGFSILDIVINNPVNLTIHFG--GEKGK 1682
Query: 1047 TIRLMPYLHMRFQGT-EGSLMCGPQVR-VDPGL----F----DLLDS------CLLTFRW 1090
IR Y M F+ +G L + ++ F LL + L
Sbjct: 1683 RIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 1091 SVRYRYKEEYGFVLNKPIV-------------------VDD----VRVRGLATLETSTQP 1127
+ + + G + ++ V RG+ P
Sbjct: 1742 AA-FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV--P 1798
Query: 1128 RDKSLTLESVSSTYFQHNGQCQAMSTNIYDYSSLQQGDKIVGPAIIMNELSTILVEPNCE 1187
RD E S Y M + P + S ++ E
Sbjct: 1799 RD-----ELGRSNY--------GMIA--------------INPGRVAASFSQEALQYVVE 1831
Query: 1188 AIINVTGDI-EIA 1199
+ TG + EI
Sbjct: 1832 RVGKRTGWLVEIV 1844
Score = 37.0 bits (85), Expect = 0.064
Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 61/205 (29%)
Query: 19 VFAICPDGKQCVMKLLSVSPEYPDAPT-EGIRRILQQSFCKGFENNLQ----GVNV-LF- 71
+F DGK K+ E+ + T + +L + Q + F
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------QFTQPALTLMEKAAFE 1745
Query: 72 -MQSDGGLTPMASFIG------SRAILSGPAGGLSFCKGFENNLQGVNVLFMQSDGGLTP 124
++S G + A+F G + A L+ A +S E V V+F + G+T
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYA-A-LASLADVMS----IE---SLVEVVFYR---GMTM 1793
Query: 125 MESFIGSRAILSGPAG-GLVGYATTSPTTAPVIGFDMGGTSTDVSRYYRELEHVFESTSA 183
A+ G G +P F L++V E
Sbjct: 1794 QV------AVPRDELGRSNYGMIAINPGRV-AASFSQ-----------EALQYVVERVGK 1835
Query: 184 A-GIPVQI------PQLDIQTVAAG 201
G V+I Q Q VAAG
Sbjct: 1836 RTGWLVEIVNYNVENQ---QYVAAG 1857
Score = 36.6 bits (84), Expect = 0.078
Identities = 47/302 (15%), Positives = 69/302 (22%), Gaps = 147/302 (48%)
Query: 54 QSFCKGFENNLQGVNVLFMQSDGGLTPMASFIGSRA-----ILSGPAGGLSFCKGFENNL 108
+SF F + + + VLF FIG R S P L ENN
Sbjct: 290 ESF---FVSVRKAITVLF------------FIGVRCYEAYPNTSLPPSILEDSL--ENN- 331
Query: 109 QGVNVLFMQSDGGLTPM-----------ESFI-------------------GSRA-ILSG 137
+G +PM + ++ G++ ++SG
Sbjct: 332 ----------EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 138 PAGGLVGYATT-----------------S-----------PTTAPVIGFDMGGTSTDVSR 169
P L G T S P +P F S
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---FH--------SH 430
Query: 170 YYRE-LEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFVVGPESAGALPGPRC 228
+ + + + + I GS L R
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--------------------RV 470
Query: 229 YRNQGPLTITDCNLVLGRIIPEYFPAI----------FGPNKDQPLDEEGTREAFALLTK 278
I DC + L P + FGP G +LT
Sbjct: 471 LSGSISERIVDCIIRL----PVKWETTTQFKATHILDFGP---------GGASGLGVLTH 517
Query: 279 EI 280
Sbjct: 518 RN 519
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.015
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 15/42 (35%)
Query: 1244 NIKERLDFSCALFGPDGGLVSNAPHIPVHLGSMQEAVKFQID 1285
+K +L S L+ D +AP + A+K ++
Sbjct: 21 ALK-KLQASLKLYADD-----SAPAL---------AIKATME 47
Score = 35.3 bits (80), Expect = 0.050
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 706 NIKERLDFSCALFGPDGGLVSNAPHIPVHLGSMQ 739
+K +L S L+ D +AP + + +M+
Sbjct: 21 ALK-KLQASLKLYADD-----SAPALAIK-ATME 47
Score = 33.8 bits (76), Expect = 0.15
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 27 KQCVMKLLSVSPEY-PD-APTEGIRRILQ 53
KQ + KL + Y D AP I+ ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 2.2
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 15/50 (30%)
Query: 216 GPESAGALPGPRCYRNQGPLTITD----------CNLVLG-RII---PEY 251
GP L P C + P + C LVL +++ E+
Sbjct: 15 GPNLNIVLTCPEC-KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEW 63
Score = 30.8 bits (69), Expect = 2.2
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 15/50 (30%)
Query: 887 GPESAGALPGPRCYRNQGPLTITD----------CNLVLG-RII---PEY 922
GP L P C + P + C LVL +++ E+
Sbjct: 15 GPNLNIVLTCPEC-KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEW 63
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Pseudomonas aeruginosa}
Length = 214
Score = 30.2 bits (68), Expect = 3.5
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 414 PSQARGYDTQDHILA----CFGGAGGQHACS---VARSLGIS--SVYTH 453
P QAR + IL + G + VA G+S S+Y +
Sbjct: 17 PQQARSSELVASILEAAVQVL-ASEGAQRFTTARVAERAGVSIGSLYQY 64
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 30.7 bits (69), Expect = 4.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 144 GYATTSPTTAPVIGFDMGGTSTDVSRYYRELEHVFESTSAAG 185
G TT TT P+ D+G STD S + + + + AG
Sbjct: 398 GALTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHLAGAG 439
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU
genomics, PSI, protein structure initative, midwest
center structural genomics; HET: G4P; 1.80A {Bacillus
subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 29.6 bits (67), Expect = 5.0
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 245 GRIIPEYFPAIFGPNKDQPLDEEGTREAFALLTKEINKFYKDNNIPKVLSIEEVALGFI 303
G ++ + + D L+ + + E + + I K+++IE + G
Sbjct: 15 GVVLSDQVLKV-----DSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIE--SSGIA 66
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 30.3 bits (68), Expect = 6.1
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 125 MESFIGSRAILSG--PAGGLVGYATTSPTTAPVIGFDMGGTSTDVSRYYRELEHVFESTS 182
+ + + + ++ G + G TT AP+ D+G STD + E + +
Sbjct: 379 LSARLQTEVVVGGVEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITAVHLA 438
Query: 183 AAG 185
AG
Sbjct: 439 GAG 441
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 29.1 bits (66), Expect = 6.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 271 EAFALLTKEINKFYKDNNIPKVLSIEEVALGFI 303
A + KE+ YKD I KV+ IE + GFI
Sbjct: 36 AALDAVRKEVTAHYKDVPITKVVGIE--SRGFI 66
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 29.1 bits (66), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 271 EAFALLTKEINKFYKDNNIPKVLSIEEVALGFI 303
+A+AL + + YK+ I KV+ E A GF+
Sbjct: 46 KAYALSIDLLVERYKNAGITKVVGTE--ARGFL 76
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 29.6 bits (66), Expect = 7.2
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 226 PRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFAL 275
+C+ +G T+ N+ +P+ KD P+ G +A +
Sbjct: 22 SQCFDAKGRYIRTNLNMPHS--LPQRSGGFRDYEKDAPITVFGCMQARLV 69
Score = 29.6 bits (66), Expect = 7.2
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 897 PRCYRNQGPLTITDCNLVLGRIIPEYFPAIFGPNKDQPLDEEGTREAFAL 946
+C+ +G T+ N+ +P+ KD P+ G +A +
Sbjct: 22 SQCFDAKGRYIRTNLNMPHS--LPQRSGGFRDYEKDAPITVFGCMQARLV 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,429,388
Number of extensions: 1416065
Number of successful extensions: 2750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 30
Length of query: 1453
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1347
Effective length of database: 3,742,167
Effective search space: 5040698949
Effective search space used: 5040698949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.8 bits)