RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12816
(1453 letters)
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 29.0 bits (65), Expect = 1.5
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 241 NLVLGRIIPEYFPAIFGPNKDQPLD-EEGTREAFALLTKEINKFYKDNNIPKVLSIEEVA 299
L ++ + P +F +K + E AF+ + I K+L E+VA
Sbjct: 36 GLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLG-------IEKLLDPEDVA 88
Query: 300 LG 301
+
Sbjct: 89 VR 90
>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 28.6 bits (64), Expect = 1.9
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 139 AGGLVGYATTSPTTAPVIGFDMGGTSTDVSRYYRE 173
GGL GY S + P+I F S RYYRE
Sbjct: 4 VGGLGGYMLGSAMSRPIIHFG----SDYEDRYYRE 34
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 30.5 bits (68), Expect = 2.1
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 1344 GLTPGSMPPHSQKLTEEGAVFESFDIVRDGEFQEAAVTAQLMEPAKYPGCSGTRNLPDNL 1403
G + T + A+ ++ Q A A+L+ + + L
Sbjct: 639 GSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWL 698
Query: 1404 ADLKAQIAANQKGISLVQDVIQLY--------GLPVVQAYMKHIQT 1441
+AA K + + + G PV Q Y K IQT
Sbjct: 699 KSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQT 744
>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C)
{Human hepatitis A virus [TaxId: 208726]}
Length = 212
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/103 (12%), Positives = 31/103 (30%)
Query: 155 VIGFDMGGTSTDVSRYYRELEHVFESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGLFV 214
++ D+++++ + V + + V ++ G M + +
Sbjct: 87 LMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHK 146
Query: 215 VGPESAGALPGPRCYRNQGPLTITDCNLVLGRIIPEYFPAIFG 257
+ L + +R +G C L AI G
Sbjct: 147 KNDGTTVDLTVDQAWRGKGEGLPGMCGGALVSSNQSIQNAILG 189
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 117
Score = 28.0 bits (62), Expect = 3.7
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 140 GGLVGYATTSPTTAPVIGFDMGGTSTDVSRYYRE 173
GGL GYA + FD D R++ E
Sbjct: 5 GGLGGYAMGRVMSGMNYHFD----RPDEYRWWSE 34
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle
(Trachemys scripta) [TaxId: 34903]}
Length = 107
Score = 27.8 bits (62), Expect = 3.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 140 GGLVGYATTSPTTAPVIGFDMGGTSTDVSRYYRE 173
GGL GYA S + + FD + +++ E
Sbjct: 5 GGLGGYALGSAMSGMRMNFD----RPEERQWWNE 34
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 196
Score = 28.5 bits (63), Expect = 4.0
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 1350 MPPHSQKLTEEGAVFESFDIVRDGE--FQEAAVTAQLMEPAKYPG 1392
M S E+ F+SF +R+ E F +A YPG
Sbjct: 83 MKCRSHTEREQHFPFDSFFYIRNSEHEFSYSAEKGSTFTLIMYPG 127
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana) [TaxId: 8400]}
Length = 111
Score = 27.5 bits (61), Expect = 4.4
Identities = 2/26 (7%), Positives = 4/26 (15%)
Query: 224 PGPRCYRNQGPLTITDCNLVLGRIIP 249
+ + C P
Sbjct: 55 VINMNVLSTTRFQLNTCTRTSITPRP 80
Score = 27.5 bits (61), Expect = 4.4
Identities = 2/26 (7%), Positives = 4/26 (15%)
Query: 895 PGPRCYRNQGPLTITDCNLVLGRIIP 920
+ + C P
Sbjct: 55 VINMNVLSTTRFQLNTCTRTSITPRP 80
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 27.6 bits (60), Expect = 6.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 153 APVIGFDMGGTSTDV 167
AP+IG D+GGT
Sbjct: 2 APLIGIDIGGTGIKG 16
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 28.1 bits (61), Expect = 8.4
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 156 IGFDMGGTSTDVSRYYRELEHV--FESTSAAGIPVQIPQLDIQTVAAGGGSMLFFRSGL- 212
+G D GGT + + + + + + Q I+ + GG+ +
Sbjct: 3 VGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENIN 62
Query: 213 --FVVGPESAGALPGPRCYRNQGPLTITDCNLVLG 245
+ E A G + + D
Sbjct: 63 IPAQIFVEFDAASQGLGILLKEQGHDLADYIFANV 97
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 27.9 bits (60), Expect = 8.9
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 5 KFNFAIDRGGTFTDVFAICPDGKQCVMKLLSVSPEYPDAPTEGIRRILQQ 54
K+ D GGT A+C + + + S + IR L++
Sbjct: 1 KYALVGDVGGTNA-RLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEE 49
>d1z7xx1 d.5.1.1 (X:8-125) Ribonuclease A (also ribonuclease B, S)
{Human (Homo sapiens), des1-7 [TaxId: 9606]}
Length = 118
Score = 26.7 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 228 CYRNQGPLTITDCNLVLGRIIP 249
CY++ + ITDC L G P
Sbjct: 65 CYKSNSSMHITDCRLTNGSRYP 86
Score = 26.7 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 899 CYRNQGPLTITDCNLVLGRIIP 920
CY++ + ITDC L G P
Sbjct: 65 CYKSNSSMHITDCRLTNGSRYP 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,374,035
Number of extensions: 256336
Number of successful extensions: 653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 14
Length of query: 1453
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1356
Effective length of database: 1,075,786
Effective search space: 1458765816
Effective search space used: 1458765816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)