BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12817
(1201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FF9|A Chain A, Apo Saccharopine Reductase
pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|B Chain B, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|C Chain C, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|D Chain D, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|E Chain E, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|F Chain F, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|G Chain G, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|H Chain H, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5L|A Chain A, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1E5L|B Chain B, Apo Saccharopine Reductase From Magnaporthe Grisea
Length = 450
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 188/297 (63%), Gaps = 8/297 (2%)
Query: 565 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGS 624
+++VL+LG+G+V+RP ++ L D I +T+ E K++ +DVN+ +
Sbjct: 3 TKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 61
Query: 625 DNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITV 684
L V DLV+SL+PY H V + I+ K++VT SY+SP MM L + A AGITV
Sbjct: 62 --LDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119
Query: 685 LNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGV 744
+NE+GLDPGIDHL A++ I+ H GGK+++F+SYCGGLPAPE S+NPL YKFSWS RGV
Sbjct: 120 MNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGV 179
Query: 745 LLNTLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLRYAQLYNIAAE 804
LL ++A + ++ +V ++ AG ELM TA+P PGF+F + NRDS Y + Y I E
Sbjct: 180 LLALRNAASFYKDGKVTNV-AGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQI-PE 237
Query: 805 AHTVVRGTLRYRGFVDAMQAIQKLGLLDLKEHPALHPSGPEICWRELVCTLLGLSTS 861
A +VRGTLRY+GF ++ + +G L +E P L + P W+E ++ S++
Sbjct: 238 ADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIP---WKEATQKIVKASSA 291
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 1071 IIVQKQNTP----IDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVY 1126
I K+ TP +DTL L +K+ ++G+RD+++L+H +I + SRE ++ SL Y
Sbjct: 324 IFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEY 383
Query: 1127 GQPNGT---TAMAKTVGLPAAIAAKMILEG 1153
G P G+ +AMAK VG+P A+A K +L+G
Sbjct: 384 GAPIGSGGYSAMAKLVGVPCAVAVKFVLDG 413
>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
Forming) From Saccharomyces Cerevisiae
Length = 467
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 192/296 (64%), Gaps = 8/296 (2%)
Query: 566 RNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
+NVLLLG+G+V++P+I+ L +++I++T+ + + G +A +DV + +
Sbjct: 24 KNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGS-KAISLDVTDDSA- 81
Query: 626 NLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITVL 685
L ++ D+V+SL+PY H +V + I+ ++VT+SY+SP + L AGITV+
Sbjct: 82 -LDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVM 140
Query: 686 NEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVL 745
NE+GLDPGIDHL A++ ID H GGK++SF+SYCGGLPAPE S+NPL YKFSWS RGVL
Sbjct: 141 NEIGLDPGIDHLYAVKTIDEVHRAGGKLKSFLSYCGGLPAPEDSDNPLGYKFSWSSRGVL 200
Query: 746 LNTLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLRYAQLYNIAAEA 805
L +SAKY ++ ++ + + +LM TA+P PG++F + NRDS + LY+I EA
Sbjct: 201 LALRNSAKYWKDGKIETV-SSEDLMATAKPYFIYPGYAFVCYPNRDSTLFKDLYHI-PEA 258
Query: 806 HTVVRGTLRYRGFVDAMQAIQKLGLLDLKEHPALHPSGPEICWRELVCTLLGLSTS 861
TV+RGTLRY+GF + ++A+ +G+ LK+ S P I W E + LG ++
Sbjct: 259 ETVIRGTLRYQGFPEFVKALVDMGM--LKDDANEIFSKP-IAWNEALKQYLGAKST 311
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 1070 DIIVQKQNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVYGQP 1129
D + + +DTL L + + +D +RD++VL+H I W + + E ++ +LV YG+
Sbjct: 347 DAKITPRGNALDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGTTETRTSTLVDYGKV 406
Query: 1130 NGTTAMAKTVGLPAAIAAKMILEGEFFVXXXXXXGPTGVASESP 1173
G ++MA TVG P AIA K +L+G GP +A SP
Sbjct: 407 GGYSSMAATVGYPVAIATKFVLDGTI-------KGPGLLAPYSP 443
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 26/30 (86%)
Query: 464 RNVLLLGAGYVSRPLIEYLHRDENIHITLG 493
+NVLLLG+G+V++P+I+ L +++I++T+
Sbjct: 24 KNVLLLGSGFVAQPVIDTLAANDDINVTVA 53
>pdb|2Q99|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae
Length = 381
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 161/416 (38%), Gaps = 81/416 (19%)
Query: 9 REDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAII-----QEDIS 63
R + E RAAL P+ VK+L+ G K+ V+ S + + + Y AGAII +
Sbjct: 17 RAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAP 76
Query: 64 EASIIFGVKQVPVDLLLP-NKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEKLVDDE 122
II G+K+ P P + F+H K Q +L ++ + L D E L +D+
Sbjct: 77 RDRIIIGLKEXPETDTFPLVHEHIQFAHCYKDQAGWQNVLXRFIKGHGTLYDLEFLENDQ 136
Query: 123 GNRVVAFGKYAGVAGMVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNSMMARQAIRDAGY 182
G RV AFG YAG AG + + P N + + + +D
Sbjct: 137 GRRVAAFGFYAGFAGAA-LGVRDWAFKQTHSDDEDLPAVSPYPNEK--ALVKDVTKDYKE 193
Query: 183 EISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYAC 242
++ G + P ++ G GA ++L KV +N
Sbjct: 194 ALATG----ARKPTVLIIGALGRCGSGAI-------------DLLHKVGIPDAN------ 230
Query: 243 EVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTLP 302
+ + + E +GG +D P A I IN IY S +
Sbjct: 231 -ILKWDIKETSRGGPFDE------------------IPQADIFINCIYL---SKPIAPFT 268
Query: 303 DAKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISAD---PGGSIEFMNECTTIDTPFCLY 359
+ + L PN RL + D+SAD P I T + P L
Sbjct: 269 NXEKLNNPN---------------RRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLV 313
Query: 360 DADSNKDTKSFKGPGVLVCSIDNMPTQLPMEATDFFGNLVFPYALDILQSDASKPI 415
+ GP + V SID++P+ LP EA++FF + + P +L++L + P+
Sbjct: 314 PTTA--------GPKLSVISIDHLPSLLPREASEFFSHDLLP-SLELLPQRKTAPV 360
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 918 LVDYEKLVDDEGNRVVAFGKYAGVAG 943
L D E L +D+G RV AFG YAG AG
Sbjct: 126 LYDLEFLENDQGRRVAAFGFYAGFAG 151
>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
pdb|2QRK|A Chain A, Crystal Structure Of Amp-Bound Saccharopine Dehydrogenase
(L-Lys Forming) From Saccharomyces Cerevisiae
pdb|2QRL|A Chain A, Crystal Structure Of Oxalylglycine-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
Length = 394
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 164/417 (39%), Gaps = 83/417 (19%)
Query: 9 REDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAII-----QEDIS 63
R + E RAAL P+ VK+L+ G K+ V+ S + + + Y AGAII +
Sbjct: 30 RAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAP 89
Query: 64 EASIIFGVKQVPVDLLLP-NKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEKLVDDE 122
II G+K++P P + F+H K Q +L ++ + L D E L +D+
Sbjct: 90 RDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQ 149
Query: 123 GNRVVAFGKYAGVAG-MVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNSMMARQAIRDAG 181
G RV AFG YAG AG + + P + P N + + + +D
Sbjct: 150 GRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLP--AVSPYPNEK--ALVKDVTKDYK 205
Query: 182 YEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYA 241
++ G + P ++ G GA ++L KV +N
Sbjct: 206 EALATG----ARKPTVLIIGALGRCGSGAI-------------DLLHKVGIPDAN----- 243
Query: 242 CEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTL 301
+ + + E +GG +D P A I IN IY S +
Sbjct: 244 --ILKWDIKETSRGGPFDE------------------IPQADIFINCIYL---SKPIAPF 280
Query: 302 PDAKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISAD---PGGSIEFMNECTTIDTPFCL 358
+ + L PN RL + D+SAD P I T + P L
Sbjct: 281 TNMEKLNNPN---------------RRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVL 325
Query: 359 YDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEATDFFGNLVFPYALDILQSDASKPI 415
+ GP + V SID++P+ LP EA++FF + + P +L++L + P+
Sbjct: 326 VPTTA--------GPKLSVISIDHLPSLLPREASEFFSHDLLP-SLELLPQRKTAPV 373
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 918 LVDYEKLVDDEGNRVVAFGKYAGVAG 943
L D E L +D+G RV AFG YAG AG
Sbjct: 139 LYDLEFLENDQGRRVAAFGFYAGFAG 164
>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine
Dehydrogenase From Saccharomyces Cerevisiae.
pdb|3UH1|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae With Bound Saccharopine And
Nadh
pdb|3UHA|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad.
pdb|3UHA|B Chain B, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad
Length = 373
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 164/417 (39%), Gaps = 83/417 (19%)
Query: 9 REDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAII-----QEDIS 63
R + E RAAL P+ VK+L+ G K+ V+ S + + + Y AGAII +
Sbjct: 9 RAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAP 68
Query: 64 EASIIFGVKQVPVDLLLP-NKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEKLVDDE 122
II G+K++P P + F+H K Q +L ++ + L D E L +D+
Sbjct: 69 RDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQ 128
Query: 123 GNRVVAFGKYAGVAG-MVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNSMMARQAIRDAG 181
G RV AFG YAG AG + + P + P N + + + +D
Sbjct: 129 GRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLP--AVSPYPNEK--ALVKDVTKDYK 184
Query: 182 YEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYA 241
++ G + P ++ G GA ++L KV +N
Sbjct: 185 EALATG----ARKPTVLIIGALGRSGSGAI-------------DLLHKVGIPDAN----- 222
Query: 242 CEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTL 301
+ + + E +GG +D P A I IN IY S +
Sbjct: 223 --ILKWDIKETSRGGPFDE------------------IPQADIFINCIYL---SKPIAPF 259
Query: 302 PDAKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISAD---PGGSIEFMNECTTIDTPFCL 358
+ + L PN RL + D+SAD P I T + P L
Sbjct: 260 TNMEKLNNPN---------------RRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVL 304
Query: 359 YDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEATDFFGNLVFPYALDILQSDASKPI 415
+ GP + V SID++P+ LP EA++FF + + P +L++L + P+
Sbjct: 305 VPTTA--------GPKLSVISIDHLPSLLPREASEFFSHDLLP-SLELLPQRKTAPV 352
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 918 LVDYEKLVDDEGNRVVAFGKYAGVAG 943
L D E L +D+G RV AFG YAG AG
Sbjct: 118 LYDLEFLENDQGRRVAAFGFYAGFAG 143
>pdb|3ABI|A Chain A, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
pdb|3ABI|B Chain B, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
Length = 365
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 23/264 (8%)
Query: 568 VLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSDNL 627
VL+LGAG + R + L + +++I G + E+++KV EF AT + V+ D L
Sbjct: 19 VLILGAGNIGRAIAWDLKDEFDVYI--GDVNNENLEKV-KEF----ATPLKVDASNFDKL 71
Query: 628 SGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITVLNE 687
+++ +LV+ LP L + I+ ++V S++ + L + A A +T++ +
Sbjct: 72 VEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFD 131
Query: 688 VGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLN 747
G PG+ ++L L G + Y GGLP + PL YK +WSPR ++
Sbjct: 132 AGFAPGLSNILMGRIFQELDLKEGYI-----YVGGLPKD--PKPPLYYKITWSPRDLIEE 184
Query: 748 TLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLRYAQLYNIAAEAHT 807
A+ ++N +V + E+ + + F FE F + D LR + L I +E
Sbjct: 185 YTRPARVIRNGKVSKVDPLSEVKKVK-----IGKFEFEAFIS-DGLR-SMLETINSE--R 235
Query: 808 VVRGTLRYRGFVDAMQAIQKLGLL 831
+ TLR+ G ++ ++ +++LG
Sbjct: 236 LEEWTLRWPGHLEKIKVLRELGFF 259
>pdb|4INA|A Chain A, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
pdb|4INA|B Chain B, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
Length = 405
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 591 HITLGSLLKEDIDKVTNE-----FGRVEATLIDVNNGGSDNLSGLVRSADLVVSL---LP 642
HITL S ++ +G ++ T +D ++ + L L+ + L LP
Sbjct: 29 HITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEVKPQIVLNIALP 86
Query: 643 YNLHHHVAEFCIQHG-KNLVTASYLSP--------EMMALHERAASAGITVLNEVGLDPG 693
Y + E C++ G L TA+Y P E A H+R G+ L G DPG
Sbjct: 87 YQ-DLTIXEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVXALLGSGFDPG 145
Query: 694 IDHLLA 699
+ ++
Sbjct: 146 VTNVFC 151
>pdb|3DEX|A Chain A, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|B Chain B, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|C Chain C, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|D Chain D, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|E Chain E, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|F Chain F, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|G Chain G, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107.
pdb|3DEX|H Chain H, Crystal Structure Of Sav_2001 Protein From Streptomyces
Avermitilis, Northeast Structural Genomics Consortium
Target Svr107
Length = 107
Score = 33.9 bits (76), Expect = 0.61, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 1 TGKVIAIRREDQSVWERRAA--LAPSNVKRLVRSGV 34
TG V +R +D+ VW+RR P+ VKRLVR V
Sbjct: 53 TGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88
>pdb|3NNF|A Chain A, Halogenase Domain From Cura Module With Fe, Chloride, And
Alpha- Ketoglutarate
pdb|3NNL|A Chain A, Halogenase Domain From Cura Module (Crystal Form Iii)
pdb|3NNL|B Chain B, Halogenase Domain From Cura Module (Crystal Form Iii)
pdb|3NNM|A Chain A, Halogenase Domain From Cura Module (Crystal Form Iv)
pdb|3NNM|B Chain B, Halogenase Domain From Cura Module (Crystal Form Iv)
Length = 344
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 896 VQKQNTPIDTLSHFLRQKLNIRLVDYEKLVDDEGNRVVAFGKYA 939
V Q+ P+ H LR+ IRLVDY+ VD+E R+ F KY+
Sbjct: 250 VLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEE--RLGLFSKYS 291
>pdb|3NNJ|A Chain A, Halogenase Domain From Cura Module (Apo Hal)
pdb|3NNJ|B Chain B, Halogenase Domain From Cura Module (Apo Hal)
Length = 344
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 896 VQKQNTPIDTLSHFLRQKLNIRLVDYEKLVDDEGNRVVAFGKYA 939
V Q+ P+ H LR+ IRLVDY+ VD+E R+ F KY+
Sbjct: 250 VLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEE--RLGLFSKYS 291
>pdb|1PJB|A Chain A, L-alanine Dehydrogenase
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
Length = 361
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 332 ICDISADPGGSIEFMNECTTIDTPFCLYDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEA 391
I D++ D GG +E ++ + + ++ GV+ + NMP +P A
Sbjct: 263 IVDVAVDQGGCVETLHPTSHTQPTYEVF--------------GVVHYGVPNMPGAVPWTA 308
Query: 392 TDFFGNLVFPYALDI 406
T N PY + +
Sbjct: 309 TQALNNSTLPYVVKL 323
>pdb|1QC5|A Chain A, I Domain From Integrin Alpha1-beta1
Length = 192
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 485 DENIH----ITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFSPAVQAAIIA 532
DENI LGS + ++ +KF+ ++S AS+P E+H F+ + + A++
Sbjct: 132 DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEIALVT 183
>pdb|1PT6|A Chain A, I Domain From Human Integrin Alpha1-beta1
pdb|1PT6|B Chain B, I Domain From Human Integrin Alpha1-beta1
Length = 213
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 485 DENIH----ITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFSPAVQAAIIA 532
DENI LGS + ++ +KF+ ++S AS+P E+H F+ + + A++
Sbjct: 136 DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 187
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 174 RQAIRDAGYEISLGNMPKSIGPLTI 198
R+A+RD GY++ L + P S+ PLT+
Sbjct: 104 REALRDEGYDLVLLDAPPSLSPLTL 128
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 980 RQAIRDAGYEISLGNMPKSIGPLTI 1004
R+A+RD GY++ L + P S+ PLT+
Sbjct: 104 REALRDEGYDLVLLDAPPSLSPLTL 128
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 174 RQAIRDAGYEISLGNMPKSIGPLTI 198
R+A+RD GY++ L + P S+ PLT+
Sbjct: 104 REALRDEGYDLVLLDAPPSLSPLTL 128
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 980 RQAIRDAGYEISLGNMPKSIGPLTI 1004
R+A+RD GY++ L + P S+ PLT+
Sbjct: 104 REALRDEGYDLVLLDAPPSLSPLTL 128
>pdb|1QC5|B Chain B, I Domain From Integrin Alpha1-beta1
Length = 192
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 485 DENIH----ITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFSPAVQAAIIA 532
DENI LGS + ++ +KF+ ++S AS+P E+H F+ + + A++
Sbjct: 132 DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEIALVT 183
>pdb|1QCY|A Chain A, The Crystal Structure Of The I-Domain Of Human Integrin
Alpha1beta1
Length = 193
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 485 DENIH----ITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFSPAVQAAIIA 532
DENI LGS + ++ +KF+ ++S AS+P E+H F+ + + A++
Sbjct: 131 DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT 182
>pdb|2EEZ|A Chain A, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|C Chain C, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|D Chain D, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|E Chain E, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|F Chain F, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
pdb|2EEZ|G Chain G, Crystal Structure Of Alanine Dehydrogenase From Themus
Thermophilus
Length = 369
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 4 VIAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQ--AYANAGA--IIQ 59
VI + +E +++ E R AL P V+ LVR G V+V+ + YA AGA + +
Sbjct: 2 VIGVPKEIKTL-ENRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGR 60
Query: 60 EDISEASIIFGVKQ-VPVDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEKL 118
E+ A ++ VK+ +P + + +F++ A + L +A+L+ + + YE +
Sbjct: 61 EEAWGAEMVVKVKEPLPEEYGFLREGLILFTYLHLAADRG--LTEAMLRSGVTGIAYETV 118
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 64 EASIIFGVKQVPVDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNIRLVD-------YE 116
E + G Q +D + K + ET MP+L A+ +KN+ +V +
Sbjct: 330 EINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFA 389
Query: 117 KLVDDEGNRVVAFGKYAGVAGMVNI 141
G++V F ++ + G NI
Sbjct: 390 INAAARGHQVTLFDAHSEIGGQFNI 414
>pdb|1IMH|C Chain C, TonebpDNA COMPLEX
pdb|1IMH|D Chain D, TonebpDNA COMPLEX
Length = 281
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 681 GITVLNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCG 721
G TV+ EVGLDP + LA++C+ L VE+ + G
Sbjct: 101 GTTVI-EVGLDPSNNMTLAVDCVGILKLRNADVEARIGIAG 140
>pdb|4A0Q|A Chain A, Activated Conformation Of Integrin Alpha1 I-Domain Mutant
pdb|4A0Q|B Chain B, Activated Conformation Of Integrin Alpha1 I-Domain Mutant
Length = 201
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 485 DENIH----ITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFSPAVQAAII 531
DENI LGS + ++ +KF+ ++S AS+P E+H F+ + A++
Sbjct: 134 DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDALALV 184
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 987 GYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELV 1029
G+E+ +P S+ PL +G GNV+ E +E P+E LV
Sbjct: 251 GHEVKQNRLPPSLLPLQ---SGVGNVANAVLEGLKEGPFENLV 290
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 987 GYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELV 1029
G+E+ +P S+ PL +G GNV+ E +E P+E LV
Sbjct: 251 GHEVKQNRLPPSLLPLQ---SGVGNVANAVLEGLKEGPFENLV 290
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 987 GYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELV 1029
G+E+ +P S+ PL +G GNV+ E +E P+E LV
Sbjct: 251 GHEVKQNRLPPSLLPLQ---SGVGNVANAVLEGLKEGPFENLV 290
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 987 GYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELV 1029
G+E+ +P S+ PL +G GNV+ E +E P+E LV
Sbjct: 251 GHEVKQNRLPPSLLPLQ---SGVGNVANAVLEGLKEGPFENLV 290
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex With
Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex With
Coa And Citrate
Length = 505
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 987 GYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELV 1029
G+E+ +P S+ PL +G GNV+ E +E P+E LV
Sbjct: 251 GHEVKQNRLPPSLLPLQ---SGVGNVANAVLEGLKEGPFENLV 290
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 26/137 (18%)
Query: 1015 GAQEIFQELPYEELVCTL--LGLSTSDIFYENLKNIVADKVGNTXXXXXXXXXXXNDDII 1072
G I L E+V T+ +G + + Y+NLK V D G T N D +
Sbjct: 16 GKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 75
Query: 1073 VQKQNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVYG----- 1127
+ V+D DRD I + + RK+I LVV+
Sbjct: 76 I-----------------YVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDM 117
Query: 1128 -QPNGTTAMAKTVGLPA 1143
Q ++ MA ++GLPA
Sbjct: 118 EQAMTSSEMANSLGLPA 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,814,097
Number of Sequences: 62578
Number of extensions: 1467226
Number of successful extensions: 3347
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3299
Number of HSP's gapped (non-prelim): 59
length of query: 1201
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1091
effective length of database: 8,089,757
effective search space: 8825924887
effective search space used: 8825924887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)