RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12817
(1201 letters)
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 273 bits (698), Expect = 4e-82
Identities = 94/423 (22%), Positives = 151/423 (35%), Gaps = 81/423 (19%)
Query: 4 VIAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAIIQEDIS 63
+ +R E E RAAL P+ VK+L+ G K+ V+ S + + + Y AGAII S
Sbjct: 26 TLHLRAE-TKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGS 84
Query: 64 E-----ASIIFGVKQVPVDLLLP-NKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEK 117
II G+K++P P + F+H K Q +L ++ + L D E
Sbjct: 85 WKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEF 144
Query: 118 LVDDEGNRVVAFGKYAGVAGMVNILHGLGLRLLALGHHTPFMHIGPAHNYRNSMMARQAI 177
L +D+G RV AFG YAG AG + + H+ + Y N + +
Sbjct: 145 LENDQGRRVAAFGFYAGFAGAALGVRDWAFK----QTHSDDEDLPAVSPYPN---EKALV 197
Query: 178 RDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNT 237
+D + + P ++ G GA ++ ++
Sbjct: 198 KDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKV-------------------- 237
Query: 238 KIYACEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPK 297
I + + + E +GG +D P A I IN IY +
Sbjct: 238 GIPDANILKWDIKETSRGGPFDE------------------IPQADIFINCIYLSKPIAP 279
Query: 298 LLTLPDAKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISADPGG---SIEFMNECTTIDT 354
+ N R + D+SAD I T +
Sbjct: 280 FTNMEKLNNPNRRL------------------RTVVDVSADTTNPHNPIPIYTVATVFNK 321
Query: 355 PFCLYDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEATDFFGNLVFPYALDILQSDASKP 414
P L + GP + V SID++P+ LP EA++FF + + P + Q +
Sbjct: 322 PTVLVP--------TTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQRKTAPV 373
Query: 415 IEE 417
Sbjct: 374 WVR 376
Score = 81.6 bits (201), Expect = 3e-16
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 915 NIRLVDYEKLVDDEGNRVVAFGKYAGVAGMVNILHGLGLRLLALGHHTPFMHIGPAHNYR 974
+ L D E L +D+G RV AFG YAG AG + + H+ + Y
Sbjct: 136 HGTLYDLEFLENDQGRRVAAFGFYAGFAGAALGVRDWAFK----QTHSDDEDLPAVSPYP 191
Query: 975 NSMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEEL 1028
N + ++D + + P ++ G GA ++ ++ +
Sbjct: 192 N---EKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDA 242
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 270 bits (690), Expect = 4e-80
Identities = 134/372 (36%), Positives = 208/372 (55%), Gaps = 15/372 (4%)
Query: 547 LRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVT 606
S + + +NVLLLG+G+V++P+I+ L +++I++T+ + +
Sbjct: 6 HHHHHHHSSGHIEGRHM-GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALA 64
Query: 607 NEFGRVEATLIDVNNGGSDNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYL 666
+A +DV + L ++ D+V+SL+PY H +V + I+ ++VT+SY+
Sbjct: 65 K-PSGSKAISLDVTD--DSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYI 121
Query: 667 SPEMMALHERAASAGITVLNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAP 726
SP + L AGITV+NE+GLDPGIDHL A++ ID H GGK++SF+SYCGGLPAP
Sbjct: 122 SPALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSFLSYCGGLPAP 181
Query: 727 ECSENPLRYKFSWSPRGVLLNTLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEG 786
E S+NPL YKFSWS RGVLL +SAKY ++ ++ + + +LM TA+P PG++F
Sbjct: 182 EDSDNPLGYKFSWSSRGVLLALRNSAKYWKDGKIETVSS-EDLMATAKPYFIYPGYAFVC 240
Query: 787 FANRDSLRYAQLYNIAAEAHTVVRGTLRYRGFVDAMQAIQKLGLLDLKEHPALHPSGPEI 846
+ NRDS + LY+I EA TV+RGTLRY+GF + ++A+ +G+L + I
Sbjct: 241 YPNRDSTLFKDLYHI-PEAETVIRGTLRYQGFPEFVKALVDMGMLKDDANEIF---SKPI 296
Query: 847 CWRELVCTLLGLSTSD-----IFYENLKNIVADKVGNTGLEALEALGLLNDDIIVQKQNT 901
W E + LG ++ ++ D+ L LGL +D I +
Sbjct: 297 AWNEALKQYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKIT-PRGN 355
Query: 902 PIDTLSHFLRQK 913
+DTL L +
Sbjct: 356 ALDTLCARLEEL 367
Score = 100 bits (249), Expect = 4e-22
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 1021 QELPYEELVCTLLGLSTSD-----IFYENLKNIVADKVGNTGLEALEALGLLNDDIIVQK 1075
+ + + E + LG ++ ++ D+ L LGL +D I
Sbjct: 294 KPIAWNEALKQYLGAKSTSKEDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKIT-P 352
Query: 1076 QNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVYGQPNGTTAM 1135
+ +DTL L + + +D +RD++VL+H I W + + E ++ +LV YG+ G ++M
Sbjct: 353 RGNALDTLCARLEELMQYEDNERDMVVLQHKFGIEWADGTTETRTSTLVDYGKVGGYSSM 412
Query: 1136 AKTVGLPAAIAAKMILEGEF 1155
A TVG P AIA K +L+G
Sbjct: 413 AATVGYPVAIATKFVLDGTI 432
Score = 55.6 bits (133), Expect = 6e-08
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 445 LRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKED---ID 501
S + + +NVLLLG+G+V++P+I+ L +++I++T+ + +
Sbjct: 6 HHHHHHHSSGHIEGRHM-GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALA 64
Query: 502 KDKFISFVQSDASKP 516
K + D +
Sbjct: 65 KPSGSKAISLDVTDD 79
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 260 bits (664), Expect = 1e-76
Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 14/366 (3%)
Query: 565 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGS 624
+++VL+LG+G+V+RP ++ L D I +T+ E K++ +DVN+
Sbjct: 3 TKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVND--D 59
Query: 625 DNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITV 684
L V DLV+SL+PY H V + I+ K++VT SY+SP MM L + A AGITV
Sbjct: 60 AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119
Query: 685 LNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGV 744
+NE+GLDPGIDHL A++ I+ H GGK+++F+SYCGGLPAPE S+NPL YKFSWS RGV
Sbjct: 120 MNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGV 179
Query: 745 LLNTLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLRYAQLYNIAAE 804
LL ++A + ++ +V ++ G ELM TA+P PGF+F + NRDS Y + Y I E
Sbjct: 180 LLALRNAASFYKDGKVTNVA-GPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQI-PE 237
Query: 805 AHTVVRGTLRYRGFVDAMQAIQKLGLLDLKEHPALHPSGPEICWRELVCTLLGLSTSD-- 862
A +VRGTLRY+GF ++ + +G L +E P L I W+E ++ S++
Sbjct: 238 ADNIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFL---KEAIPWKEATQKIVKASSASEQ 294
Query: 863 -IFYENLKNIVADKVGNTG--LEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKLNIRLV 919
I + N + + L+ LG+ +D I + +DTL L +K+
Sbjct: 295 DIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-PRGNALDTLCATLEEKMQFEEG 353
Query: 920 DYEKLV 925
+ + ++
Sbjct: 354 ERDLVM 359
Score = 86.1 bits (212), Expect = 1e-17
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 1021 QELPYEELVCTLLGLSTSD---IFYENLKNIVADKVGNTG--LEALEALGLLNDDIIVQK 1075
+ +P++E ++ S++ I + N + + L+ LG+ +D I
Sbjct: 274 EAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-P 332
Query: 1076 QNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVYGQP---NGT 1132
+ +DTL L +K+ ++G+RD+++L+H +I + SRE ++ SL YG P G
Sbjct: 333 RGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGSGGY 392
Query: 1133 TAMAKTVGLPAAIAAKMILEGEF 1155
+AMAK VG+P A+A K +L+G
Sbjct: 393 SAMAKLVGVPCAVAVKFVLDGTI 415
Score = 46.8 bits (110), Expect = 3e-05
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 463 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSL----LKEDIDKDKFISFVQSDASKP 516
+++VL+LG+G+V+RP ++ L D I +T+ K+ + + + D +
Sbjct: 3 TKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDD 59
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 226 bits (578), Expect = 6e-66
Identities = 66/309 (21%), Positives = 129/309 (41%), Gaps = 31/309 (10%)
Query: 553 KSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRV 612
K H VL+LGAG + R + L + +++I G + E+++KV
Sbjct: 4 KVHHHHHHIEGRHMKVLILGAGNIGRAIAWDLKDEFDVYI--GDVNNENLEKVKE---FA 58
Query: 613 EATLIDVNNGGSDNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMA 672
+D +N D L +++ +LV+ LP L + I+ ++V S++ +
Sbjct: 59 TPLKVDASN--FDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLE 116
Query: 673 LHERAASAGITVLNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENP 732
L + A A +T++ + G PG+ ++L L G Y GGL P+ + P
Sbjct: 117 LRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELDLKEGY-----IYVGGL--PKDPKPP 169
Query: 733 LRYKFSWSPRGVLLNTLSSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDS 792
L YK +WSPR ++ A+ ++N +V + E+ + + F FE F +
Sbjct: 170 LYYKITWSPRDLIEEYTRPARVIRNGKVSKVDPLSEVKKV-----KIGKFEFEAFISDGL 224
Query: 793 LRYAQLYNIAAEAHTVVRGTLRYRGFVDAMQAIQKLGLLDLKEH--------PALHPSGP 844
+ + + TLR+ G ++ ++ +++LG + P +
Sbjct: 225 RSMLETI----NSERLEEWTLRWPGHLEKIKVLRELGFFKPENLDFTLRVIEPLMRYETK 280
Query: 845 EICWRELVC 853
+ ++V
Sbjct: 281 DFSIMKVVG 289
Score = 48.0 bits (114), Expect = 1e-05
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 451 KSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDK-DKFISFV 509
K H VL+LGAG + R + L + +++I G + E+++K +F + +
Sbjct: 4 KVHHHHHHIEGRHMKVLILGAGNIGRAIAWDLKDEFDVYI--GDVNNENLEKVKEFATPL 61
Query: 510 QSDASKPIE 518
+ DAS +
Sbjct: 62 KVDASNFDK 70
Score = 47.7 bits (113), Expect = 1e-05
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 1058 LEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRE 1117
++ L LG + +D + + + D ++ +
Sbjct: 250 IKVLRELGFFKPE--------NLDFTLRVIEPLMRYETKDFSIM-------KVVGKGEEG 294
Query: 1118 RKSISLVVYGQPNGTTAMAKTVGLPAAIAAKMILEGEF 1155
L + ++M++ G AAI ++++ E
Sbjct: 295 EMEFFLYDEED-SMFSSMSRVTGFTAAIISRIVAENTC 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 95.1 bits (236), Expect = 1e-19
Identities = 115/675 (17%), Positives = 207/675 (30%), Gaps = 222/675 (32%)
Query: 374 GVLVCSIDNMPTQLPMEAT----DFFGNLVFPYALDILQSDASKPIEEHNFSPAVQAAII 429
G L + +PT A+ F L P + +D +E P
Sbjct: 14 GSLEHVLL-VPTASFFIASQLQEQFNKIL--PEPTEGFAAD-----DE----PT------ 55
Query: 430 ASNGELTPKF-KYIEDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENI 488
+ EL KF Y+ L + S Q ++ VL L YL +I
Sbjct: 56 -TPAELVGKFLGYVSSLVEPSKVG------QFDQ---VLNLCLTEFEN---CYL-EGNDI 101
Query: 489 HITLGSLLKED---IDKDKFI--SFVQSD--ASKPIEEHNFSPAVQAAIIASNGELTPKF 541
H LL+E+ + K K + +++ + A +P ++ + S +A N +L F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIF 160
Query: 542 -------KYIEDLRQQSVKSRHKADIQTEESRNVLLLGAGY-VSRPLIEYLHRDENIHIT 593
Y E+LR D+ Y L+ L + T
Sbjct: 161 GGQGNTDDYFEELR----------DL--------------YQTYHVLVGDLI--KFSAET 194
Query: 594 LGSLLKEDIDKVTNEFGR---VEATLIDVNNGGSDN----------LSGLVRSADLVVSL 640
L L++ +D F + + L + +N + L G+++ A VV+
Sbjct: 195 LSELIRTTLD-AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 641 LPYNLHHHVAEF------CIQHGKNLVTASYL--SPEMMALHERAASAGITVLNEVGLDP 692
E H + LVTA + + + A ITVL +G+
Sbjct: 254 KLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGV-- 308
Query: 693 GIDHLLAMECIDAA---HLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLNTL 749
C +A L +E + G+P+P L S + +
Sbjct: 309 --------RCYEAYPNTSLPPSILEDSLENNEGVPSPM-----L------SISNLTQEQV 349
Query: 750 SSA-----KYLQNSQVVDIPAGGELMRTARPLDF-LPGF--SFEGFANRDSLRYAQLYNI 801
+L + V+I L+ A+ + + G S G LR
Sbjct: 350 QDYVNKTNSHLPAGKQVEIS----LVNGAK--NLVVSGPPQSLYGLNLT--LR-----KA 396
Query: 802 AAEAHT----------VVRGTLRYRGF--VDA------MQAIQKLGLLDLKEHPALHPSG 843
A + ++ + R F V + + L DL ++
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKN------- 446
Query: 844 PEICWR--ELVCTLLGLSTSDIFYENLKNIVADKVGNTGLEALEALGLLNDDIIVQKQNT 901
+ + ++ + T D +L+ + + D II
Sbjct: 447 -NVSFNAKDIQIPVY--DTFD--GSDLRVLSGSISER-----------IVDCIIRL---- 486
Query: 902 PIDTLSHFLRQKLNIRLVDYEKLVDDEGNRVVAFG--KYAGVAGMVN-ILHGLGLRLLAL 958
P V +E + ++ FG +G+ + + G G+R++
Sbjct: 487 P----------------VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 959 GHHTPFMHIGPAHNY 973
G + I P +Y
Sbjct: 531 GT----LDINPDDDY 541
Score = 65.8 bits (160), Expect = 7e-11
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 36/167 (21%)
Query: 18 RAALAPSNVK--RLVRSGVKVIVQPSNRRAY-PVQA------YANAGAIIQEDISEASII 68
R A APS + R+ S K+ SNR + PV + A +I +D+ + ++
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKF--SNR--FLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 69 FGVKQ--VPVDLLLPNKTYCMFS-HTIKAQETNMP--LLDAILQKNIRLVDYEKLVDDEG 123
F K +PV Y F ++ ++ ++D I++ V +E +
Sbjct: 450 FNAKDIQIPV--------YDTFDGSDLRVLSGSISERIVDCIIRLP---VKWETTTQFKA 498
Query: 124 NRVVAFG--KYAGVAGMVN-ILHGLGLRLLALGHHTPFMHIGPAHNY 167
++ FG +G+ + + G G+R++ G + I P +Y
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT----LDINPDDDY 541
Score = 63.1 bits (153), Expect = 5e-10
Identities = 86/504 (17%), Positives = 141/504 (27%), Gaps = 204/504 (40%)
Query: 218 PYEYVPPEMLQKVAEHGSNTKIYACEVRRRNYLERIKGG-GYDYQEYNENPSLY----RS 272
P++ L + G N ++ A I GG G N Y R
Sbjct: 136 PFDKKSNSALFRAVGEG-NAQLVA-----------IFGGQG--------NTDDYFEELRD 175
Query: 273 LFASKIAPYASIIINGIYWAVGSPKLLTL----PDAKNLLRP--NHMPWLPTSDGAPP-- 324
L+ + Y ++ + I ++ + L L DA+ + N + WL P
Sbjct: 176 LYQT----YHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 325 --------LPHRLLGICDISADPGGSIEFMNECTTID-TPFCLYDADSNKDTKSFKGPGV 375
P L+G+ ++ ++ + TP L G
Sbjct: 230 YLLSIPISCP--LIGVIQLAH-------YVVTAKLLGFTPGELRSYLK----------GA 270
Query: 376 LVCSIDNMPTQLPMEATD----FFGNLV----------------FP-YALDILQSDASKP 414
S + T + + TD FF ++ +P +L + S
Sbjct: 271 TGHSQG-LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 415 IEEHNFSP----------AVQAAIIASNGELTPKFK-YI---------------EDLRQQ 448
E SP VQ + +N L + I + L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 449 SVKSRH-KADIQTEESRNVLLLGAGYVSRPLI---EYL------HRDENIHITLGSLLK- 497
++ R KA ++SR + R L +L H LL
Sbjct: 390 NLTLRKAKAPSGLDQSR------IPFSERKLKFSNRFLPVASPFHS---------HLLVP 434
Query: 498 --EDIDKD---KFISFVQSDASKPIEEHNFSPAVQAAIIASNGELTPKFKYIEDLRQQ-- 550
+ I+KD +SF D P+ F +G DLR
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPV-YDTF-----------DG---------SDLRVLSG 473
Query: 551 SVKSRHKADIQTE----------ESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKE 600
S+ R I ++ ++L G G S LG L
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG---------------LGVLTHR 518
Query: 601 DIDKVTNEFGR----VEATLIDVN 620
+ D G + A +D+N
Sbjct: 519 NKD------GTGVRVIVAGTLDIN 536
Score = 53.9 bits (129), Expect = 3e-07
Identities = 75/406 (18%), Positives = 119/406 (29%), Gaps = 122/406 (30%)
Query: 853 CTLLGLSTSD-IFYENLKNIVADKVGNTGLEALEALGLLNDDIIVQKQNTPIDTLSHFL- 910
LL + T+ L+ ++ E E DD + TP + + FL
Sbjct: 18 HVLL-VPTASFFIASQLQ----EQFNKILPEPTEGFAA--DD----EPTTPAELVGKFLG 66
Query: 911 ---RQKLNIRLVDYE---KLVDDEGNRVVAFGKYAGVAGMVNILHGLGLRLLALGHHTPF 964
++ ++ L E G +I H L +LL T
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--------DI-HALAAKLLQENDTTLV 117
Query: 965 MHIGPAHNYRNSMMARQAIRDAGYEISLGNMPKSI-------GPLTI--VFTGSGNVSQG 1015
NY AR + S G + +F G QG
Sbjct: 118 KTKELIKNYIT---ARIMAK-----RPFDKKSNSALFRAVGEGNAQLVAIFGG-----QG 164
Query: 1016 AQEI-FQEL-----PYEELVCTLLGLSTSDIFYENLKNIVADKVGNTGL--EALEALGLL 1067
+ F+EL Y LV L+ S E L ++ + + + L L L
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSA-----ETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 1068 NDDIIVQKQNTP-IDTLSH--------FLRQKLVLDDGDRDVIVLRHDIDILWPNRSRER 1118
+ NTP D L + Q L +V + P R
Sbjct: 220 EN-----PSNTPDKDYLLSIPISCPLIGVIQ-LA------HYVVTAKLLG-FTPGELRSY 266
Query: 1119 KSISLVVYGQPNGTTAMAKTVGLPAAIA-----------AKMILEGEFFV------TTST 1161
G T ++ + AIA + + FF+
Sbjct: 267 LK----------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 1162 SSGPTGVASES-------PSPSLSTANLT--VLQPW-RKLSAYQPP 1197
+S P + +S PSP LS +NLT +Q + K +++ P
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Score = 53.5 bits (128), Expect = 4e-07
Identities = 93/607 (15%), Positives = 165/607 (27%), Gaps = 233/607 (38%)
Query: 638 VSLLPYNLHHHVAEFCIQHGKNLV-TASYL---------------SPEMMALHERAASAG 681
S P L H E + LV TAS+ E A + +
Sbjct: 4 YSTRPLTLSHGSLEHVL-----LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 682 ---------ITVLNEVGLDPGIDHLL--AMECIDAAHLNGGKVESFVSYCGGLPAPECSE 730
++ L E D +L + + +L G + + + L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA---KLLQEN--D 113
Query: 731 NPLRYKFSWSPRGVLLNTLSSAKYLQNSQVVDIPAGGE----LMRTAR----PLDFLPGF 782
L + N Y+ + P + L R L
Sbjct: 114 TTLVKTKEL-----IKN------YITARIMAKRPFDKKSNSALFRAVGEGNAQL-----V 157
Query: 783 S-FEGFANRDS----LRYAQLYNIAAEAHTVVRGTLRYRGFVDAM--QAIQKLGLL---- 831
+ F G N D LR LY Y V + + + L L
Sbjct: 158 AIFGGQGNTDDYFEELR--DLYQT-------------YHVLVGDLIKFSAETLSELIRTT 202
Query: 832 -----------DLK---EHPALHP----------SGPEICWREL-----VCTLLGLSTSD 862
++ E+P+ P S P I +L LLG + +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 863 I----------------------------FYENLKNIVADKVGNT-----GLEALEALGL 889
+ F+ +++ + T G+ EA
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI------TVLFFIGVRCYEAYPN 316
Query: 890 LN------DDIIVQKQNTP----------IDTLSHFLRQKLNIRLVDYEK----LVDDEG 929
+ +D + + P + + ++ K N L ++ LV+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAK 375
Query: 930 NRVVAFGKYAGVAGMVNILHGL----GL---------RLLALGH---------HTPFMHI 967
N VV+ G + G+ L GL R L + H+ +
Sbjct: 376 NLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL-- 432
Query: 968 GPAHNYRNSMMARQAIRDAGYEISLGNMPKSIGPLTIVF-TGSG-NVSQGAQEIFQELPY 1025
PA + N + + + +I +P V+ T G ++ + I + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDI---QIP--------VYDTFDGSDLRVLSGSISERI-- 479
Query: 1026 EELVCTL-------LGLSTSDI--F----YENLKNIVADKVGNTGLEALEALGLLN---D 1069
+ + L + I F L + TG+ + A G L+ D
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDINPD 538
Query: 1070 DIIVQKQ 1076
D KQ
Sbjct: 539 DDYGFKQ 545
Score = 47.0 bits (111), Expect = 4e-05
Identities = 66/328 (20%), Positives = 100/328 (30%), Gaps = 116/328 (35%)
Query: 823 QAIQKLGL-LDLKEHPALHPSGPEICWRE---LVCTLLGLSTSDIFYENLKNIVADKVGN 878
Q Q+ G+ +DL + + ++ W G S DI N N+ G
Sbjct: 1624 QGSQEQGMGMDLYKTS---KAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 879 TGL--------------------------EALEAL---------GLLNDDIIVQKQNT-P 902
G E E GLL+ Q T P
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-----ATQFTQP 1734
Query: 903 -IDTLSHFLRQKLNIRLVDYEKLVDDEGNRVVAFGKYAGVAGMVNILHGLG---LRLLAL 958
+ + +E L +G A AG H LG AL
Sbjct: 1735 ALTLME----------KAAFEDL-KSKGLIP----ADATFAG-----HSLGEYA----AL 1770
Query: 959 GHHTPFMHIGPA----HNYRNSMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQ 1014
M I YR M RD + G + +I P + + S
Sbjct: 1771 ASLADVMSIESLVEVVF-YRGMTMQVAVPRDELGRSNYGMI--AINPGRVAASFS----- 1822
Query: 1015 GAQEIFQELPYEELVCTLLGLSTSDIF----YENLKN---IVADKVGNTGLEALEALGLL 1067
QE Q V +G T + Y N++N + A G+ L AL+ + +
Sbjct: 1823 --QEALQY------VVERVGKRTGWLVEIVNY-NVENQQYVAA---GD--LRALDTVTNV 1868
Query: 1068 NDDIIVQKQNTPIDTLSHFLRQKLVLDD 1095
+ I +QK ID + L++ L L++
Sbjct: 1869 LNFIKLQK----IDIIE--LQKSLSLEE 1890
Score = 46.2 bits (109), Expect = 7e-05
Identities = 61/337 (18%), Positives = 104/337 (30%), Gaps = 138/337 (40%)
Query: 667 SPEM-MALHERAASA---------------GITVLNEVGLDPGIDHLLAMECIDAAHLNG 710
M M L++ + +A G ++L+ V +P ++ G
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP----------VNLTIHFG 1677
Query: 711 GKVE----------SFVSYCGGLPA-----PECSENPLRYKFSWSPRGVLLNTLSSAKYL 755
G+ F + G E +E+ Y F S +G+L T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSAT------- 1729
Query: 756 QNSQ----VVDIPAGGELMRTARPLDFLPGFSFEGFANRD------SL-RYAQLYNIAAE 804
Q +Q +++ A E +++ +G D SL YA L A+
Sbjct: 1730 QFTQPALTLMEK-AAFEDLKS------------KGLIPADATFAGHSLGEYAAL---ASL 1773
Query: 805 A-----HTVVRGTLRYRGFVDAMQAIQKLGLLDLKEHP--ALHPSGPEICWRELVCTLLG 857
A ++V + YRG MQ L + A++P +
Sbjct: 1774 ADVMSIESLVE-VVFYRG--MTMQVAVPRDELGRSNYGMIAINPG------------RVA 1818
Query: 858 LSTSDIFYENLKNIVADKVGNTGLEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKLNIR 917
S S E L+ +V TG +E IV N N+
Sbjct: 1819 ASFSQ---EALQYVVERVGKRTG-WLVE---------IV---N-------------YNV- 1848
Query: 918 LVDYEKLVDDEGNRVVAFGKYAGVAGMVNILHGLGLR 954
E + VA G + + N+L+ + L+
Sbjct: 1849 ----------ENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Score = 44.3 bits (104), Expect = 3e-04
Identities = 74/495 (14%), Positives = 143/495 (28%), Gaps = 139/495 (28%)
Query: 18 RAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAIIQEDIS-------------- 63
L +++ L ++ + ++ Y A + +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 64 EASI--IF---GVKQVPVDLLLPNKTYCMFSHTIKAQETNMPLLDAI---LQKNIRLVDY 115
A + IF G + L Y + + L+ L + IR
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVG------DLIKFSAETLSELIRTTLD 204
Query: 116 EKLVDDEGNRVVAFGKYAGVAGMVNILH-------GLGLRLLALGHHTPFMHIG---PAH 165
+ V +G ++ + + + L +G+ + L H+ + P
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPG- 261
Query: 166 NYRNSM-----------MARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQG--AQE 212
R+ + A AI + S + +T++F G E
Sbjct: 262 ELRSYLKGATGHSQGLVTAV-AIAETDSWESFFVSVRKA--ITVLF------FIGVRCYE 312
Query: 213 IFQELPYEYVPPEMLQKVAEHGSNTKIYACEVR--RRNYLERIKGGGYDYQEYNENPSLY 270
+ P +PP +L+ E+ + + ++ + N +
Sbjct: 313 AY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY------VNKTNSHLPAG 363
Query: 271 RSLFASKIAPYASIIINGIYWAV--GSPK-LLTLPDAKNLLRPNHMPW------LPTSDG 321
+ + S ++NG V G P+ L L LR P +P S+
Sbjct: 364 KQVEIS--------LVNGAKNLVVSGPPQSLYGL---NLTLRKAKAPSGLDQSRIPFSER 412
Query: 322 APPLPHRLLGIC-------------DISAD-PGGSIEFMNECTTIDTPFCLYDADSNKDT 367
+R L + I+ D ++ F + I P +YD D
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQIP--VYDTFDGSDL 468
Query: 368 KSFKGPGVLVCSIDNMPTQLPM--EATDFFGNLVFPYALDILQSDASKPIEEHNFSPAVQ 425
+ G + I + +LP+ E T F + LD F P
Sbjct: 469 RVLSGS--ISERIVDCIIRLPVKWETTTQFK---ATHILD--------------FGPGGA 509
Query: 426 AAIIASNGELTPKFK 440
+ + G LT + K
Sbjct: 510 SGL----GVLTHRNK 520
Score = 37.7 bits (87), Expect = 0.030
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 34/149 (22%)
Query: 1011 NVSQGAQEIFQELPYEELVCTLLGLSTSDIFYENLKNIVADKVGNTGLEALEALGLLNDD 1070
S+ AQ+++ + G S DI N N+ G G E + +
Sbjct: 1637 KTSKAAQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 1071 IIVQKQNTPIDTLSHFLRQKLVLDDGDRDV--IVLRHDIDILWPNRSRERKSISLVVYGQ 1128
T +D L+ + + + + R + +L S + Q
Sbjct: 1695 -------TIVD---GKLKTEKIFKEINEHSTSYTFRSEKGLL-----------SATQFTQ 1733
Query: 1129 PNGTTAMAKTVGLPAAIAAKMILEGEFFV 1157
P A+ + AA L+ + +
Sbjct: 1734 P----ALT-LME----KAAFEDLKSKGLI 1753
Score = 33.1 bits (75), Expect = 0.70
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 19 AALA-------PSNVKRLVRS-G--VKVIVQ--PSNRRAYPVQAYANAGAIIQEDISEAS 66
AALA ++ +V G ++V V R Y + A N G + S+ +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVA-ASFSQEA 1825
Query: 67 IIFGVKQV---------PVDLLLPNKTY-CMFSHTIKAQETNMPLLDAILQKNIRLV 113
+ + V++V V+ + N+ Y + ++A +T +L+ I + I ++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVA--AGDLRALDTVTNVLNFIKLQKIDII 1880
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 74.1 bits (182), Expect = 7e-16
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 565 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGS 624
N+ ++GAG + + + L N +T+ + + V +D +
Sbjct: 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD--E 60
Query: 625 DNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTAS---YLSPEMMALHERAAS 679
L+ + D V+S P+ L +A+ G + + + + AL E + +
Sbjct: 61 AGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTEDVAATNAVRALVEDSQT 118
Score = 47.1 bits (112), Expect = 2e-06
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 463 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDK--DKFISFVQSDASKPIEEH 520
N+ ++GAG + + + L N +T+ + ++ Q DA
Sbjct: 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLA 64
Query: 521 NFSPAVQAAIIASNGELTPK 540
A I A+ LTP
Sbjct: 65 KALGGFDAVISAAPFFLTPI 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 7e-13
Identities = 93/765 (12%), Positives = 208/765 (27%), Gaps = 273/765 (35%)
Query: 431 SNGELTPKF--KYIEDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENI 488
++ F ++++ + V+ K+ + EE ++++
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------------DAVSGT 64
Query: 489 HITLGSLLK----------EDIDKDKFISFVQSDASKPIEEHNFSPAV-------QAAII 531
+LL E++ + + F+ S PI+ P++ Q +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMS----PIKTEQRQPSMMTRMYIEQRDRL 119
Query: 532 ASNGELTPKFKYIEDLRQQSVKSRHKADIQTEESRNVLL---LGAG------YVSRPLIE 582
++ ++ K+ + R Q +A ++ ++NVL+ LG+G V
Sbjct: 120 YNDNQVFAKY-NVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 583 YLHRDENIH-ITLGSLLKED--IDKVTNEFGRVEATLIDVNNGGSDNLSGLVRSADLVVS 639
D I + L + + ++ + +++ ++ S+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------------- 222
Query: 640 LLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITVLNEVGLDPGIDHLLA 699
+ +H AE + L+ +E + VL V +
Sbjct: 223 -IKLRIHSIQAEL-----RRLL--------KSKPYENC----LLVLLNVQ-NA------- 256
Query: 700 MECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLNTLSSAKYLQNSQ 759
+ +A N C +LL T + Q
Sbjct: 257 -KAWNA--FNLS----------------CK--------------ILLTT-------RFKQ 276
Query: 760 VVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLR-YAQLYNIAAEAHTVVRGTLRYRGF 818
V D + T LD + + + +
Sbjct: 277 VTDFLSAAT--TTHISLDHHS----MTLTPDEVKSLLLKYLDCRPQ-------------- 316
Query: 819 VDAMQAIQKLGLLDL-KEHPALHPSGPEICWRELVCTLLGLSTSDIF--YENLKNIVADK 875
DL +E +P +++ S D ++N K++ DK
Sbjct: 317 -------------DLPREVLTTNP---------RRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 876 VGNT---GLEALE---------ALGLLNDDIIVQKQNTPIDTLSHFLRQKLNIRLVDYEK 923
+ L LE L + + P LS L+ ++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-----HIPTILLS----------LIWFDV 399
Query: 924 LVDDEGNRVVAFGKYAGVAGMVNI--------LHGLGLRLLALGHHTPFMHIGPAHNYRN 975
+ D V KY +V + + L L + +H
Sbjct: 400 IKSDVMVVVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALH--------- 446
Query: 976 SMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELVCTLLGL 1035
++I D Y I + P + Q + + + L +
Sbjct: 447 -----RSIVDH-YNIPKTFDSDDLIPPYL-----------DQYFYSHIGHH-----LKNI 484
Query: 1036 STSDIF------YENLKNIVADKVGNTGLEALEALGLLNDDI---------IVQKQNTP- 1079
+ + + + K+ + A A G + + + I
Sbjct: 485 EHPERMTLFRMVFLDF-RFLEQKIRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 1080 --IDTLSHFLRQ---KLVLDDGDRDV--IVLRHDIDILWPNRSRE 1117
++ + FL + L+ D+ I L + + ++ ++
Sbjct: 543 RLVNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQ 586
Score = 61.8 bits (149), Expect = 1e-09
Identities = 97/692 (14%), Positives = 176/692 (25%), Gaps = 227/692 (32%)
Query: 57 IIQE--DISEASIIFGVKQVPVDLLL--PNKTYCMFSHTIKAQETNMP-LLDAI----LQ 107
II +S +F LL + F N L+ I Q
Sbjct: 54 IIMSKDAVSGTLRLF-------WTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQ 104
Query: 108 KNIRLVDYEKLVDDEGNRVVAFGKY---------------------AGVAGMVNILHGLG 146
++ Y + D N F KY V ++ G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-----LIDGVL 159
Query: 147 LRLLALGHHTPFMHIGPAHNYRNSMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNV 206
G G + +A + M I L + N
Sbjct: 160 ------G-------SG------KTWVALDVCLSYKVQC---KMDFKIFWLNL-----KNC 192
Query: 207 SQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYACEVRRRNYLERIKGGGYDYQEYNEN 266
+ + EMLQK+ N+ R +
Sbjct: 193 NSPETVL-----------EMLQKL-----------LYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 267 PSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTLPDAKNLLRPNHMPWLPTSDGAPPLP 326
+ R L SK LL L + +N
Sbjct: 231 QAELRRLLKSKPYENC---------------LLVLLNVQN-------AKA---------- 258
Query: 327 HRLLGICDISADPGGSIEFMNEC----TTIDTPFCLYDADSNKDTKSFKGPGVLVCSIDN 382
+A F C TT + D S T + +
Sbjct: 259 --------WNA-------FNLSCKILLTTRFK--QVTDFLSAATTTH-------ISLDHH 294
Query: 383 MPTQLPMEATDFFGNLVFPYALDILQSDASKPIEEHNFSPAVQAAIIASNGELTPKFKYI 442
T P E LD D P E +P + I S + +
Sbjct: 295 SMTLTPDEVKSLLLK-----YLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 443 EDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHR-DENIHITLG--SLLKED 499
+ + + + ++ + E R + + L + HI SL+ D
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEY---------RKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 500 IDKDKFISFVQSDASKP-IEEHNFSPAVQAAIIASNGELTPKFKYIEDLRQQSVKSRHKA 558
+ K + V +E+ + I + ++ + K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTI----------------SIPSI---YLELKVKL 439
Query: 559 DIQTEESRNVL---LLGAGYVSRPLIEYLHRDENIHITLGS-LLKEDIDKVTNEFGRV-- 612
+ + R+++ + + S LI + D+ + +G L + + F V
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 613 -----EATLIDVNNGGSDNLSGLVRSADLVVSLLPYNLH---HH---------VAEFCIQ 655
E + ++ + N SG + + + L Y + + + +F +
Sbjct: 499 DFRFLEQKIR--HDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 656 HGKNLVTASY-------LSPEMMALHERAASA 680
+NL+ + Y L E A+ E A
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 51.8 bits (123), Expect = 1e-06
Identities = 42/362 (11%), Positives = 92/362 (25%), Gaps = 134/362 (37%)
Query: 3 KVIAIR-REDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAIIQED 61
+IA R+ + W+ + + ++ S + V+ +P+ R + +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKM----F--------DR 377
Query: 62 ISEASIIFGVKQVPVDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYEKLVDD 121
+S +F P +P + + + + ++ K L Y LV+
Sbjct: 378 LS----VF-----PPSAHIPTILLSLIWFDVIKSDVMV-----VVNK---LHKY-SLVEK 419
Query: 122 EGNRVVAFGKYAGVAGMVNILHGLGLRLLALGHHTPFMHIGPAHNYRNSMMARQAIRDAG 181
+ + + + L L + +H ++I D
Sbjct: 420 QPKE----STIS--------IPSIYLELKVKLENEYALH--------------RSIVDH- 452
Query: 182 YEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYA 241
Y I + P + Q + + + H +
Sbjct: 453 YNIPKTFDSDDLIPPYL-----------DQYFYSHIGH-------------H-----LKN 483
Query: 242 CEVRRRNYLERIKGGGYDYQEYNENPSLYRSL-FASKIAPYASIIINGIYWAVGSPKLLT 300
E + ++ F I + W L T
Sbjct: 484 IE---------------HPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNT 523
Query: 301 LPDA---KNLLRPNHMPWLPTSDGAPPLPHRLLGICDISADPGGSIEFMNECTT--IDTP 355
L K + N P RL + I ++F+ + I +
Sbjct: 524 LQQLKFYKPYICDND-----------PKYERL--VNAI-------LDFLPKIEENLICSK 563
Query: 356 FC 357
+
Sbjct: 564 YT 565
Score = 37.1 bits (85), Expect = 0.046
Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 64/218 (29%)
Query: 960 HHTPF----MHIGPAHNYRN--SMMARQAIRDAG-YEISLGNMPKSIGPLT------IVF 1006
HH F + Y++ S+ + + ++ +MPKSI L+ I+
Sbjct: 5 HHMDFETGEHQ----YQYKDILSVFEDAFVDNFDCKDVQ--DMPKSI--LSKEEIDHII- 55
Query: 1007 TGSGNVSQGAQEIF------QELPYEELVCTLLGLSTSDIFYENLKNIVADKVGNTGLEA 1060
S + G +F QE ++ V +L ++ +K T +
Sbjct: 56 -MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI 113
Query: 1061 LEALGLLNDDIIVQKQNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKS 1120
+ L ND+ + K N LRQ L R +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----------------------LELRPA 150
Query: 1121 ISLVVYGQPNGTTAMA---KTVGLPAAIAAKMILEGEF 1155
++++ G + KT + + ++ +
Sbjct: 151 KNVLIDG-------VLGSGKTW-VALDVCLSYKVQCKM 180
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 52.3 bits (126), Expect = 5e-07
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPS--NRRAYPVQAYANAGAII--QE 60
+ I +E E R A + +VK+L G V+V+ P Q Y AGA +
Sbjct: 28 VFIAKESDPN-EGRVAGSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAA 86
Query: 61 DISEASIIFGVKQVP----VDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNI 110
D A +I V + P + N + A+ +
Sbjct: 87 DAKTADVILKV-RRPSAQEISGYRSGAVVIAIMDPY----GNEEAISAMAGAGL 135
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 51.5 bits (124), Expect = 1e-06
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPS--NRRAYPVQAYANAGAIIQEDI 62
I + RE ERR AL P V++L G++V+V+ + + Y AGA I +
Sbjct: 25 IGVPRESAEG-ERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDP- 82
Query: 63 SEASIIFGVKQVP----VDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNI 110
A ++ V P + L P F T L + ++
Sbjct: 83 WPADVVVKV-NPPTSDEISQLKPGSVLIGFLAPR----TQPELASRLRIADV 129
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 51.5 bits (124), Expect = 1e-06
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPS--NRRAYPVQAYANAGAII--QE 60
I I RE + E R A P V++L++ G V V+ ++ +A+ AGA I
Sbjct: 10 IGIPRERLTN-ETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGN 68
Query: 61 DISEASIIFGVKQVP----VDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNI 110
+ ++ II V P + LL P T F N L+ + ++N+
Sbjct: 69 SVWQSEIILKV-NAPLDDEIALLNPGTTLVSFIWPA----QNPELMQKLAERNV 117
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 49.6 bits (119), Expect = 4e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPS--NRRAYPVQAYANAGAII---- 58
IAI +E + E R A++P VK+LV G +VIV+ + A AGA I
Sbjct: 3 IAIPKERRPG-EDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTA 61
Query: 59 QEDISEASIIFGVK 72
+ +S+A +++ V+
Sbjct: 62 AQALSQADVVWKVQ 75
Score = 29.6 bits (67), Expect = 6.4
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 332 ICDISADPGGSIEF--MNECTTIDTPFCLYDADSNKDTKSFKGPGVLVCSIDNMPTQLPM 389
I D++ + GG+ + GV + N+P+++
Sbjct: 290 IIDLAVEAGGNCPLSEPGKIVVKH--------------------GVKIVGHTNVPSRVAA 329
Query: 390 EATDFFGNLVFPYALDILQSDASKPIEEHNFS-PAVQAAIIASNGELT-PKFK 440
+A+ F + + + D V + +G + P
Sbjct: 330 DASPLFAKNLLNFLTPHVDKDTKTL--VMKLEDETVSGTCVTRDGAIVHPALT 380
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 42.7 bits (100), Expect = 6e-04
Identities = 29/216 (13%), Positives = 64/216 (29%), Gaps = 31/216 (14%)
Query: 565 SRNVLLLGAGYVSRPLIEYLHRDENI---HITLGSLLKEDIDKVTNEFGRVEATLIDVNN 621
++LG G V + L+ + +I +T+ + V ++G
Sbjct: 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTI-IAAEGTKVDVAQQYGVSFKLQQITPQ 71
Query: 622 GGSDNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASY-----------LSPEM 670
+ + + D ++ + + C Q G + A+ ++
Sbjct: 72 NYLEVIGSTLEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNR 131
Query: 671 -------MALHERAASAGITVLNEVGLDPG-IDHLLAMECIDAAHLNGGKVESFVSYCG- 721
+ T L G +PG + H + ++ A NG + +
Sbjct: 132 RTNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGLTINRPKNAAEW 191
Query: 722 -------GLPAPECSENPLRYKFSWSPRGVLLNTLS 750
G+ +E + + G +NT S
Sbjct: 192 ANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWS 227
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2
PDB: 1pjb_A* 1say_A
Length = 361
Score = 42.0 bits (100), Expect = 8e-04
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 16 ERRAALAPSNVKRLVRSGVKVIVQPSNRRA-----YPVQAYANAGAII---QEDISEASI 67
E R L+PS+V+ LV +G V ++ +A + Q Y AGA + +D +
Sbjct: 13 EFRVGLSPSSVRTLVEAGHTVFIE---TQAGIGAGFADQDYVQAGAQVVPSAKDAWSREM 69
Query: 68 IFGVK 72
+ VK
Sbjct: 70 VVKVK 74
Score = 30.5 bits (70), Expect = 3.7
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 332 ICDISADPGGSIEFMNECTTIDTPFCLYDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEA 391
I D++ D GG +E T+ P Y+ GV+ + NMP +P A
Sbjct: 263 IVDVAVDQGGCVE-TLHPTSHTQP--TYEVF-----------GVVHYGVPNMPGAVPWTA 308
Query: 392 TDFFGNLVFPYALDILQSDASKPIEEHNFSPAVQAAIIASNGELT 436
T N PY + + A++ ++ A+ + L
Sbjct: 309 TQALNNSTLPYVVKL----ANQGLKALETDDALAKGLNVQAHRLV 349
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 42.1 bits (100), Expect = 0.001
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 16 ERRAALAPSNVKRLVRSGVKVIVQPSNRRA-----YPVQAYANAGAII--QEDISEASII 68
E R AL P V+ LVR G V+V+ R A YA AGA + +E+ A ++
Sbjct: 13 ENRVALTPGGVESLVRRGHTVLVE---RGAGEGSGLSDAEYARAGAELVGREEAWGAEMV 69
Query: 69 FGVK 72
VK
Sbjct: 70 VKVK 73
Score = 30.5 bits (70), Expect = 3.1
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 332 ICDISADPGGSIEFMNECTTIDTPFCLYDADSNKDTKSFKGPGVLVCSIDNMPTQLPMEA 391
I D++ D GG +E TT P Y D GV+ + NMP +P +
Sbjct: 262 IVDVAVDQGGCVE-TIRPTTHAEP--TYVVD-----------GVVHYGVANMPGAVPRTS 307
Query: 392 TDFFGNLVFPYALDILQSDASKPIEEHNFSPAVQAAIIASNGELT 436
T N PY L + A K ++ A+ + G LT
Sbjct: 308 TFALTNQTLPYVLKL----AEKGLDALLEDAALLKGLNTHKGRLT 348
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 41.3 bits (98), Expect = 0.001
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 16 ERRAALAPSNVKRLVRSGVKVIVQPS--NRRAYPVQAYANAGAIIQEDISEA 65
E R A+ P+ V L R G +V++Q A + AGA + +
Sbjct: 13 EFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQV 64
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 39.8 bits (92), Expect = 0.005
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 29/169 (17%)
Query: 567 NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDK-------VTNEFGRVEATLIDV 619
+ L+GAG + ++ + R + I + S + E R T +
Sbjct: 25 RIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAM 84
Query: 620 NNGGSDNLSGLVRSADLVVSLLPYNLH----------HHVAEFCIQHGKNLVTASYLSPE 669
+ DL++S ++ I++GK+LV ++ E
Sbjct: 85 TRAIEAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV---MMNVE 141
Query: 670 MMA-----LHERAASAGITVLNEVGLDPGIDHLLAMECIDAAHLNGGKV 713
L +A G+ G +P ME I+ G +V
Sbjct: 142 ADVTIGPYLKAQADKQGVIYSLGAGDEPS----SCMELIEFVSALGYEV 186
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 38.9 bits (90), Expect = 0.006
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 567 NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSDN 626
V L+G G + + L E+L R+ + ++L + ++ + +
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNG---FEIAAILDVRGEHE-----KMVRGIDEF------- 46
Query: 627 LSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHER----AASAGI 682
L R D+ V AE ++ G +L+ S + R G
Sbjct: 47 ---LQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR 103
Query: 683 TVLNEVGLDPGIDHLLAM-ECIDAAHLNGGK 712
V G G+D + + E I+ L K
Sbjct: 104 RVYIASGAIGGLDAIFSASELIEEIVLTTRK 134
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 36.9 bits (85), Expect = 0.030
Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 25/148 (16%)
Query: 558 ADIQTEESR-NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATL 616
I VL++G G + + L+E L + + + +
Sbjct: 4 DKIHHHHHHMTVLIIGMGNIGKKLVE--------------LGNFEKIYAYDRISKDIPGV 49
Query: 617 IDVNNGGSDNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYL----SPEMMA 672
+ ++ + VV + +++ N + S
Sbjct: 50 VRLDE------FQVPSDVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRER 103
Query: 673 LHERAASAGITVLNEVGLDPGIDHLLAM 700
++ V G G+D L ++
Sbjct: 104 FFSELKNSPARVFFPSGAIGGLDVLSSI 131
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 34.5 bits (79), Expect = 0.17
Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 18/154 (11%)
Query: 567 NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSDN 626
++G G + R ++ L + I +++ + +V E +
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIA--GIVRRNPAEVPFELQPFRVV---------SD 59
Query: 627 LSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHER----AASAGI 682
+ L S D+ + P A ++ G + + ++AL A +G
Sbjct: 60 IEQL-ESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA 118
Query: 683 TVLNEVGLDPGIDHLLAMECIDAAHLNGGKVESF 716
+ G DPG D + + + A + G +
Sbjct: 119 AAVIASGWDPGSDSV--VRTLMQAIVPKGITYTN 150
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 33.5 bits (77), Expect = 0.40
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 31/165 (18%)
Query: 567 NVLLLGAGYVSRPL-IEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
V +LG G L + I+ ++ ++V +F E
Sbjct: 7 KVGILGYGLSGSVFHGPLLDVLDEYQIS--KIMTSRTEEVKRDFPDAEVV---------H 55
Query: 626 NLSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHERAA 678
L + +LV+ P LH+ CIQ GK++V TA+ + E L A
Sbjct: 56 ELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTAT--AEEGETLKRAAD 113
Query: 679 SAGITVLNEVG----LDPGIDHLLAMECIDAAHLNGGKVESFVSY 719
G VL V D D L + I L + ++
Sbjct: 114 EKG--VLLSVYHNRRWDN--DFLTIKKLISEGSL--EDINTYQVS 152
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 33.0 bits (75), Expect = 0.62
Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 635 DLVVSLLPYNLHHHVAEFCIQHGKNLVTASYL---------SPEMMALHERAASAGITVL 685
D++V + H+ V ++ KN YL + ++++ AA G V
Sbjct: 91 DMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERG--VQ 148
Query: 686 NEVGL----DPGIDHLLAMECIDAAHLNGGKVESF-VSYCGGLPAPECSENPLRYKFSWS 740
+ L P L A E I ++ G + S ++ GG E +Y +
Sbjct: 149 TIISLQGRKSP--YILRAKELISQGYI--GDINSIEIAGNGGWYGYERPVKSPKYIYEIG 204
Query: 741 PRGVLLN-----TLSSAKYLQNSQVVDIPAGGELMRTARPL 776
L+ T+ +Y+ +S I A + L
Sbjct: 205 NGVDLVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQEL 245
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 32.5 bits (74), Expect = 0.77
Identities = 56/411 (13%), Positives = 102/411 (24%), Gaps = 127/411 (30%)
Query: 1 TGKVIAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQPSNRRAYPVQAYANAGAIIQ- 59
TG IA+ D R+ + ++L + + + + GA+
Sbjct: 6 TGLKIAVIGGD----ARQLEII----RKLTEQQADIYLV-----GFDQLDHGFTGAVKCN 52
Query: 60 ---EDISEASIIFGVKQVPVDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYE 116
+ I + + + +K + ++ I E
Sbjct: 53 IDEIPFQQIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLE 112
Query: 117 KLVDDEGNRVVAFGKYAGVAGMVNILHGLGLRLLALGHHTPFMHIGPAHNYRNSMMARQA 176
+ ++V + +A +I G +LA+ H
Sbjct: 113 NIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQH---------------------- 150
Query: 177 IRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSN 236
+I + G G F L G+N
Sbjct: 151 ------------TDYTIHGSQVAVLGLGRTGMTIARTFAAL----------------GAN 182
Query: 237 TKIYACEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSP 296
K+ A R +L RI G +E + I IN I
Sbjct: 183 VKVGA---RSSAHLARITEMGLVPFHTDE---------LKEHVKDIDICINTI-----PS 225
Query: 297 KLLTLPDAKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISADPGGSIEFMNECTTIDTPF 356
+L + +L M P L I D+++ PGG D +
Sbjct: 226 MILN----QTVLS--SMT-----------PKTL--ILDLASRPGG----------TDFKY 256
Query: 357 CLYDADSNKDTKSFKGPGVLVCSIDNMPTQL-PMEATDFFGNLVFPYALDI 406
G+ +P + P A N++ +I
Sbjct: 257 AEKQ-------------GIKALLAPGLPGIVAPKTAGQILANVLSKLLAEI 294
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural
genomics, APC62130.1, methyltransferase, PSI-2, P
structure initiative; 2.00A {Bacteroides fragilis} PDB:
3fq6_A
Length = 115
Score = 30.5 bits (70), Expect = 0.99
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 782 FSFEGFANRDSLRYAQLYNIAAEAHTVV 809
F FEGF + R +L ++ E T+V
Sbjct: 20 FCFEGFLPQKKGRMTKLKSLVDEHRTMV 47
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 32.2 bits (73), Expect = 1.1
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 603 DKVTNEFGRVEATLIDVNNGGSDNLSGL--VRSADLVVSLLPYNLHHHVAEFCIQH---G 657
D N+ A G + L + + AD+V+SL+ VA H
Sbjct: 55 DLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSDE 114
Query: 658 KNLVTASYLSPEMM-ALHERAASAGITVL 685
+ + + P+ A+ + +
Sbjct: 115 AVFIDLNSVGPDTKALAAGAIATGKGSFV 143
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged
DNA; HET: EEM 0TT; 2.00A {Geobacillus
thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A*
4fhf_A*
Length = 368
Score = 31.7 bits (71), Expect = 1.4
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 26/136 (19%)
Query: 171 MMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYV-------- 222
+ A + + AGY++ + P+ + QE+ ++L +
Sbjct: 243 LAAARKVAGAGYKLGF-----VVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELI 297
Query: 223 ----PPEMLQKVAEHGSNTKIYACEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKI 278
+ + + T++ E +R+ R G Y Y++ E I
Sbjct: 298 QHRFTKPAKRVIEQRYPKTRLDLDETKRKYKWGRYGIGKYVYRD--EEAKELEDTMRRYI 355
Query: 279 A---PYASIIINGIYW 291
P A + Y+
Sbjct: 356 EQFFPGAYV----QYF 367
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 31.3 bits (71), Expect = 2.0
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 630 LVRSADLVVSLLPYNLHHHVAEFCIQH---GKNLVTASYLSPEMM-ALHERAASAGITVL 685
+ D++ SL+ VA+ H G + SP + A+ + + +
Sbjct: 80 VAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ 139
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 31.2 bits (71), Expect = 2.1
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 624 SDNLSGLVRSADLVV--SLLPYNLHHHVAEFCIQHGKNLVTASYL 666
V AD+ V + P+NL + V ++C++ + + A Y+
Sbjct: 199 DYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYV 243
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.1 bits (71), Expect = 2.4
Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 31/164 (18%)
Query: 567 NVLLLGAGYVSRPL-IEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
V LLG GY S+ + + + + D KV ++ +
Sbjct: 9 KVGLLGYGYASKTFHAPLIMGTPGLELA--GVSSSDASKVHADWPAIPVV---------S 57
Query: 626 NLSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHERAA 678
+ L DL+V P + H +A+ + GK++V T + + AL E A
Sbjct: 58 DPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVT--LSQANALKEHAD 115
Query: 679 SAGITVLNEVG----LDPGIDHLLAMECIDAAHLNGGKVESFVS 718
AG +L V D D L + L G V F S
Sbjct: 116 DAG--LLLSVFHNRRWDS--DFLTLKTLLAEGSL--GNVVYFES 153
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 30.6 bits (69), Expect = 2.6
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 567 NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSDN 626
V+++G G + L + +L+ + V +
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFL--NLIGFVSRRELGSLDEVRQI----------S 56
Query: 627 LSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKN 659
L +RS D+ + H +Q GK+
Sbjct: 57 LEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKH 91
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 30.7 bits (70), Expect = 3.1
Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 31/165 (18%)
Query: 567 NVLLLGAGYVSRPL-IEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
N+ L+G G+V + + +++ + D +KV + V
Sbjct: 9 NIALIGYGFVGKTFHAPLIRSVPGLNLA--FVASRDEEKVKRDLPDVTVI---------A 57
Query: 626 NLSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHERAA 678
+ V+ DLVV P H +A + GK++V T E L A
Sbjct: 58 SPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLD--MQEARELIALAE 115
Query: 679 SAGITVLNEVG----LDPGIDHLLAMECIDAAHLNGGKVESFVSY 719
L V D D+L + I+ L G V+ F S+
Sbjct: 116 EKQ--RLLSVFHNRRWDS--DYLGIRQVIEQGTL--GAVKHFESH 154
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 30.6 bits (70), Expect = 3.1
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 543 YIEDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDI 602
Y+ L+Q +L+LGAG S+ + L++ +T
Sbjct: 104 YVNGLKQIYEGIEDA---------YILILGAGGASKGIANELYKIVRPTLT--------- 145
Query: 603 DKVTNE-FGRVEATLIDVNNGGSDNLSGLVRSADLVV 638
V N R +++N + + D+++
Sbjct: 146 --VANRTMSRFNNWSLNINKINLSHAESHLDEFDIII 180
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 30.3 bits (69), Expect = 3.2
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 27/141 (19%)
Query: 567 NVLLLGA-GYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEF-GRVEATLIDVNNGG- 623
V + GA G + R LI+ E + + +++ + G L G
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAA------LEREGSSLLGSDAGELAGAGKTGV 60
Query: 624 --SDNLSGLVRSADLVV--SLLPYNLHHHVAEFCIQHGKNLVTASY-LSPEMMALHERAA 678
+L + D+ + + P +H FC QHGK +V + AA
Sbjct: 61 TVQSSLDAVKDDFDVFIDFTR-PEGTLNH-LAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 118
Query: 679 -----------SAGITVLNEV 688
S G+ V+ ++
Sbjct: 119 ADIAIVFAANFSVGVNVMLKL 139
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.9 bits (69), Expect = 3.3
Identities = 45/295 (15%), Positives = 91/295 (30%), Gaps = 49/295 (16%)
Query: 833 LKEHPALHPSGPEICWRELVCTLLGL----STSDIFYENLKNIVADKVGNTGLEALEALG 888
+ E+ +GL S + YE LK ++ + +G A +G
Sbjct: 438 IVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMG 497
Query: 889 LLN---------DDIIVQKQNTPIDTLSHFLRQKLNIRLVDYEKLVDDEGNRVVA----F 935
L D+ Q T ++ L L + ++L DD +++A
Sbjct: 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESL 557
Query: 936 GKYAGVAGMVNILHGLGLRLLALGHHTPFMHIGPAHNYRNSMMARQAIRDAGYEISLGNM 995
+Y G + G G +H A + N + R A+ G L
Sbjct: 558 LRYGGAFTIALAYAGTGNNSAV----KRLLH--VAVSDSNDDVRRAAVIALG--FVLLRD 609
Query: 996 PKSIGPLTIVFTGSGN------VSQGAQEIFQELPYEELVCTLLGLSTSDIFYENLKNIV 1049
++ + + + S N + + + L L+
Sbjct: 610 YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK------------ 657
Query: 1050 ADKVGNTGLEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKL-VLDDGDRDVIVL 1103
D V A+ AL + I++Q+ ++ + L V+ + ++ +
Sbjct: 658 -DPVDFVRQAAMIALSM----ILIQQTEKLNPQVADINKNFLSVITNKHQEGLAK 707
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 30.6 bits (70), Expect = 3.3
Identities = 11/89 (12%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 550 QSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEF 609
Q+++ + + + +L++GAG +R + L I + + E +++ E
Sbjct: 129 QALEEEMNITL---DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREG 185
Query: 610 GRVEATLIDVNNGGSDNLSGLVRSADLVV 638
+ + + D+++
Sbjct: 186 DERRSAYFSL-----AEAETRLAEYDIII 209
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 30.3 bits (68), Expect = 3.4
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 597 LLKEDIDKVTNEFGRVEATLIDVNNGG-SDNLSGLVRSADLVVSLLPYNLHHHVAEFCIQ 655
L ++ VT+ GR +T+ G ++ V S +V+S + + A +
Sbjct: 19 LRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGR 78
Query: 656 H-GKNLVTASYLSPE-MMALHERAASAG 681
H V + +SPE + G
Sbjct: 79 HVRGIYVDINNISPETVRMASSLIEKGG 106
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 30.2 bits (69), Expect = 3.6
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 566 RNVLLLGAGYVSRPLIEYLHRDENIHI---TLGSL--LKEDIDKVTNEFGRVEATLIDVN 620
+N+++ GAG +R + L +D NI I T+ L ++I + N+ E
Sbjct: 129 KNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF---- 184
Query: 621 NGGSDNLSGLVRSADLVV 638
L + D+++
Sbjct: 185 ----SGLDVDLDGVDIII 198
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 29.9 bits (68), Expect = 4.2
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 567 NVLLLGA-GYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
+ + GA G + R LIE + + + G+L + ++ + G V +D
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLV-GALDRTGSPQLGQDAGAFLGKQTGVAL--TD 65
Query: 626 NLSGLVRSADLVV--SLLPYNLHHHVAEFCIQHGKNLVTASY-LSPEMMALHERAA---- 678
++ + AD ++ +L P H + ++H LV + S A A
Sbjct: 66 DIERVCAEADYLIDFTL-PEGTLVH-LDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIA 123
Query: 679 -------SAGITVLNEV 688
S G+ V ++
Sbjct: 124 LVFSANMSVGVNVTMKL 140
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 30.2 bits (69), Expect = 4.3
Identities = 12/86 (13%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 543 YIEDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGS------ 596
+ + L + V+ ++ ++LG+G +R +++YL + I + +
Sbjct: 109 FGKMLSKFRVEIKNN---------ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKT 159
Query: 597 -LLKEDIDKVT-NEFGRVEATLIDVN 620
+ + ++ +E ++ +I +N
Sbjct: 160 SEIYGEFKVISYDELSNLKGDVI-IN 184
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 29.9 bits (68), Expect = 4.5
Identities = 10/80 (12%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 566 RNVLLLGAGYVSRPLIEYLHRDENIHITL-------GSLLKEDIDKVTNEFGRVEATLID 618
+ + + GAG + + D I++ + ++ ++K+ ++ +A L D
Sbjct: 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD-CKAQLFD 213
Query: 619 VNNGGSDNLSGLVRSADLVV 638
+ + + L + + +
Sbjct: 214 IEDH--EQLRKEIAESVIFT 231
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 30.0 bits (68), Expect = 4.8
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 24/129 (18%)
Query: 567 NVLLLGAGYVSR----PLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNG 622
N +G G + P + L+R ++ H+ ++ + + T
Sbjct: 4 NCAFIGFGKSTTRYHLPYV--LNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFT------- 54
Query: 623 GSDNLSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHE 675
+L ++ LVV + H A+ ++ GKN++ T + + L
Sbjct: 55 --SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPT--LAQAKELFA 110
Query: 676 RAASAGITV 684
A S G+TV
Sbjct: 111 LAKSKGLTV 119
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 5.7
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 17/87 (19%)
Query: 979 ARQAIRDAGYEISLGNMPKSIGPLTI-VFTGSGNVSQGAQEIFQELPYEELVCTLL--GL 1035
+A +G K + + +GSG G +
Sbjct: 1020 VVEAFIASGITDPYEMY-KYVHVSEVGNCSGSG---MGGVSAL-----RGMFKDRFKDEP 1070
Query: 1036 STSDIFYENLKN-----IVADKVGNTG 1057
+DI E+ N + + ++G
Sbjct: 1071 VQNDILQESFINTMSAWVNMLLISSSG 1097
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure
initiati nysgrc, NEW YORK structural genomics research
consortium; 2.80A {Sinorhizobium meliloti}
Length = 417
Score = 29.8 bits (67), Expect = 6.0
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 28/163 (17%)
Query: 635 DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHERAASAGITVLNEVG 689
+ V + P ++H+ A+ ++ G +++ T++ + L + A + L +
Sbjct: 112 EAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTL--ADAKKLKKAADESD--ALFVLT 167
Query: 690 LD----PGIDHLLAMECIDAAHLNGGKVESF--VSYCGGLPAPECSENPLRYKFSWSPR- 742
+ P + M I+ + G V L + + P
Sbjct: 168 HNYTGYPMVRQAREM--IENGDI--GAVRLVQMEYPQDWLTENIEQSGQKQAAWRTDPAR 223
Query: 743 ----GVLLN----TLSSAKYLQNSQVVDIPAGGELMRTARPLD 777
G + + ++ ++ ++ A + R LD
Sbjct: 224 SGAGGSTGDIGTHAYNLGCFVSGLELEELAADLDSFVGGRQLD 266
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 29.4 bits (67), Expect = 6.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 164 AHNYRNSMMARQAIRDAGYE 183
NY +A + R G
Sbjct: 127 TGNYLPYRLALEEARKEGAF 146
Score = 29.4 bits (67), Expect = 6.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 970 AHNYRNSMMARQAIRDAGYE 989
NY +A + R G
Sbjct: 127 TGNYLPYRLALEEARKEGAF 146
>3on2_A Probable transcriptional regulator; protein structure initiative,
PSI-2, structural genomics, MI center for structural
genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Length = 199
Score = 29.0 bits (65), Expect = 7.4
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 26/119 (21%)
Query: 173 ARQAIRDAGYE-ISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVP--PEMLQK 229
A + G + +SL + + G VS A P ++ +L
Sbjct: 21 AESTLEKDGVDGLSLRQLAREAG-----------VSHAA-------PSKHFRDRQALLDA 62
Query: 230 VAEHG----SNTKIYACEVRRRNYLERIKGGGYDYQEY-NENPSLYRSLFASKIAPYAS 283
+AE G + A E + R Y + + L ++ +K AP A+
Sbjct: 63 LAESGFLRLTAALERAVEEAESHARARFAALAGAYVSFALAHRELLALMYGNKHAPGAA 121
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 29.2 bits (66), Expect = 7.8
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 31/164 (18%)
Query: 567 NVLLLGAGYVSRPL-IEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
L G + ++ + + + +++ + + +
Sbjct: 7 KTGLAAFGMSGQVFHAPFISTNPHFELY--KIVERSKELSKERYPQASIV---------R 55
Query: 626 NLSGLVRSA--DLVVSLLPYNLHHHVAEFCIQHGKNLV-----TASYLSPEMMALHERAA 678
+ L DL+V P N H+ A ++ GKN+V T++ + + L A
Sbjct: 56 SFKELTEDPEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTST--TKQGEELIALAK 113
Query: 679 SAGITVLNEVG----LDPGIDHLLAMECIDAAHLNGGKVESFVS 718
G ++ V D D L + + + L G++ + S
Sbjct: 114 KKG--LMLSVYQNRRWDA--DFLTVRDILAKSLL--GRLVEYES 151
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 29.6 bits (67), Expect = 8.0
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 164 AHNYRNSMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQEL 217
A Y + ++ + T V +GSGNV+ + L
Sbjct: 230 ATGYGLVYFVLEVLKSLN---------IPVEKQTAVVSGSGNVALYCVQKLLHL 274
Score = 29.6 bits (67), Expect = 8.0
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 970 AHNYRNSMMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQEL 1023
A Y + ++ + T V +GSGNV+ + L
Sbjct: 230 ATGYGLVYFVLEVLKSLN---------IPVEKQTAVVSGSGNVALYCVQKLLHL 274
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.2 bits (65), Expect = 8.8
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 34/139 (24%)
Query: 566 RNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSD 625
NV +LG G V + + +G+ + + ++
Sbjct: 156 ANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAEMGMEPFHI---------S 205
Query: 626 NLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERA-----ASA 680
+ +R D+ ++ +P +VTA+ L+ + AS
Sbjct: 206 KAAQELRDVDVCINTIP---------------ALVVTANVLA----EMPSHTFVIDLASK 246
Query: 681 GITVLNEVGLDPGIDHLLA 699
GI LL
Sbjct: 247 PGGTDFRYAEKRGIKALLV 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,825,345
Number of extensions: 1232312
Number of successful extensions: 3438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3359
Number of HSP's successfully gapped: 97
Length of query: 1201
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1097
Effective length of database: 3,798,009
Effective search space: 4166415873
Effective search space used: 4166415873
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)