RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12817
(1201 letters)
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast
fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 267
Score = 216 bits (551), Expect = 5e-64
Identities = 92/231 (39%), Positives = 135/231 (58%), Gaps = 11/231 (4%)
Query: 690 LDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLNTL 749
LDPGIDHL A++ I+ H GGK+++F+SYCGGLPAPE S+NPL YKFSWS RGVLL
Sbjct: 1 LDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALR 60
Query: 750 SSAKYLQNSQVVDIPAGGELMRTARPLDFLPGFSFEGFANRDSLRYAQLYNIAAEAHTVV 809
++A + ++ +V ++ G ELM TA+P PGF+F + NRDS Y + Y I EA +V
Sbjct: 61 NAASFYKDGKVTNVA-GPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQI-PEADNIV 118
Query: 810 RGTLRYRGFVDAMQAIQKLGLLDLKEHPALHPSGPEICWRELVCTLLGLSTSD---IFYE 866
RGTLRY+GF ++ + +G L +E P L + P W+E ++ S++ I
Sbjct: 119 RGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIP---WKEATQKIVKASSASEQDIVST 175
Query: 867 NLKNIVADKVGNTG--LEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKLN 915
+ N + + L+ LG+ +D I + +DTL L +K+
Sbjct: 176 IVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-PRGNALDTLCATLEEKMQ 225
Score = 96.2 bits (239), Expect = 2e-22
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1021 QELPYEELVCTLLGLSTSD---IFYENLKNIVADKVGNTG--LEALEALGLLNDDIIVQK 1075
+ +P++E ++ S++ I + N + + L+ LG+ +D I
Sbjct: 150 EAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKIT-P 208
Query: 1076 QNTPIDTLSHFLRQKLVLDDGDRDVIVLRHDIDILWPNRSRERKSISLVVYGQPNGT 1132
+ +DTL L +K+ ++G+RD+++L+H +I + SRE ++ SL YG P G+
Sbjct: 209 RGNALDTLCATLEEKMQFEEGERDLVMLQHKFEIENKDGSRETRTSSLCEYGAPIGS 265
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 77.0 bits (188), Expect = 1e-16
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 565 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGS 624
+++VL+LG+G+V+RP ++ L D I +T+ E K++ +DVN+
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVND--D 58
Query: 625 DNLSGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITV 684
L V DLV+SL+PY H V + I+ K++VT SY+SP MM L + A AGITV
Sbjct: 59 AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 118
Query: 685 LNEVGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGLPAPECSE--NPL 733
+NE+G + + + G + G+ AP S+ +PL
Sbjct: 119 MNEIGYSAMAKLVGVPCAVAVKFVLDGTIS-----DRGVLAPMNSKINDPL 164
Score = 41.5 bits (96), Expect = 2e-04
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 463 SRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKDKFISFVQSDASKPIEEHNF 522
+++VL+LG+G+V+RP ++ L D I +T+ + +
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLT-DSGIKVTVA-----CRTLESAKKLSAGVQHSTPISLDV 55
Query: 523 SP 524
+
Sbjct: 56 ND 57
>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase
{Phormidium lapideum [TaxId: 32060]}
Length = 193
Score = 61.2 bits (148), Expect = 4e-11
Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 20/191 (10%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQ--PSNRRAYPVQAYANAGAIIQEDI 62
I + +E ++ E R L+PS+V+ LV +G V ++ + Q Y AGA +
Sbjct: 3 IGVPKEIKN-QEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSA 61
Query: 63 SE---ASIIFGVKQVP---VDLLLPNKTYCMFSHTIKAQETNMPLLDAILQKNIRLVDYE 116
+ ++ VK+ DL+ ++ + H A+E L+ + + YE
Sbjct: 62 KDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMR----VGLTAIAYE 117
Query: 117 KLVDDEGNR--VVAFGKYAGVAGMVNILHGLGLRLLALGHH-----TPFMHIGPAHNYRN 169
+ + + + + ++ L + + N +
Sbjct: 118 TVELPNRSLPLLTPMSIIVPWTATQALNNSTLPYVVKLANQGLKALETDDALAKGLNVQA 177
Query: 170 SMMARQAIRDA 180
+ A++
Sbjct: 178 HRLVHPAVQQV 188
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 194
Score = 36.7 bits (84), Expect = 0.009
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 5 IAIRREDQSVWERRAALAPSNVKRLVRSGVKVIVQP--SNRRAYPVQAYANAGAII---Q 59
IAI +E + E R A++P VK+LV G +VIV+ + A AGA I
Sbjct: 3 IAIPKERRP-GEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTA 61
Query: 60 EDISEASIIFGVKQVPVDLLLPNKTYCMF 88
+ + Q P+ +
Sbjct: 62 AQALSQADVVWKVQRPMTAEEGTDEVALI 90
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 33.8 bits (76), Expect = 0.065
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 564 ESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRV----EATLIDV 619
+ + ++LLGAG S + + I L + E DK RV + +
Sbjct: 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT 76
Query: 620 NNGGSDNLSGLVRSADLVVSLLPYNLHHHVAE-----FCIQHGKNLVTASYLSPEMMALH 674
+ + + SAD++ + + E + H LVT +P M L
Sbjct: 77 DLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLL 136
Query: 675 ERAASAGITVLNEVGLD 691
++A AG ++ G
Sbjct: 137 QQAQQAGCKTID--GYG 151
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 177
Score = 33.1 bits (74), Expect = 0.11
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Query: 566 RNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLK-EDIDKVTNEFGRVEATLIDVNNGGS 624
+N+++ GAG +R + L +D NI I ++ K E + K E + +G
Sbjct: 19 KNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLD 78
Query: 625 DNLSGL-VRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGIT 683
+L G+ + + + P + + +V +P L + A
Sbjct: 79 VDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAK 138
Query: 684 VLN 686
+N
Sbjct: 139 TIN 141
Score = 27.7 bits (60), Expect = 7.0
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 464 RNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKDKFISFVQSDASKPIEEHNFS 523
+N+++ GAG +R + L +D NI I ++ K + + + + ++
Sbjct: 19 KNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLD 78
Query: 524 PAVQAAIIASN 534
+ I N
Sbjct: 79 VDLDGVDIIIN 89
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE
{Haemophilus influenzae [TaxId: 727]}
Length = 171
Score = 31.4 bits (70), Expect = 0.32
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 564 ESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGG 623
+++VL+LGAG ++ ++ L + +I L + ++ F N
Sbjct: 17 PNQHVLILGAGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQP------YGNIQA 69
Query: 624 SDNLSGLVRSADLVVSLLP---YNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASA 680
S +++ DLV++ V ++ G Y S
Sbjct: 70 VSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSL 129
Query: 681 GI-TVLNEVGLD 691
G+ V + G
Sbjct: 130 GLTNVSD--GFG 139
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal
domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 88
Score = 30.1 bits (68), Expect = 0.36
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 866 ENLKNIVADKVGNTGLEALEAL----GLLNDDIIVQKQNTPIDTLSHFLRQKLNIRLVDY 921
+ N+ +G+ ++ L L + D+ I + N ++ + L V Y
Sbjct: 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSY 65
Query: 922 EKLVDDEGNRVV 933
K D + +
Sbjct: 66 RKTRDKDSGWFI 77
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 31.1 bits (70), Expect = 0.50
Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 56/201 (27%)
Query: 184 ISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTKIYACE 243
+ LG +P + P +V G G V A + G+ +I+
Sbjct: 22 VLLGGVP-GVKPGKVVILGGGVVGTEA----------------AKMAVGLGAQVQIFDIN 64
Query: 244 VRRRNYLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTLPD 303
V R +YLE + G + N A ++I + +L
Sbjct: 65 VERLSYLETLFGSRVELLYSNSA-------EIETAVAEADLLIGAVLVPGRRAPILVPAS 117
Query: 304 AKNLLRPNHMPWLPTSDGAPPLPHRLLGICDISADPGGSIEFMNECTTIDTPFCLYDADS 363
+R + I D++ D GG +E T+ P
Sbjct: 118 LVEQMRTGSV------------------IVDVAVDQGGCVE-TLHPTSHTQPTYEVF--- 155
Query: 364 NKDTKSFKGPGVLVCSIDNMP 384
GV+ + NMP
Sbjct: 156 ----------GVVHYGVPNMP 166
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 293
Score = 31.6 bits (71), Expect = 0.50
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 977 MMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEELVCTLLGLS 1036
I +A Y LG M G T G GNV + + +
Sbjct: 13 HGIENFIENASYMSILG-MTPGFGDKTFAVQGFGNVGLHSMRYLH-----RFGAKCVAVG 66
Query: 1037 TSDIFYENLKNIVADKV 1053
SD N I ++
Sbjct: 67 ESDGSIWNPDGIDPKEL 83
Score = 29.3 bits (65), Expect = 2.6
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 171 MMARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQEL 217
I +A Y LG M G T G GNV +
Sbjct: 13 HGIENFIENASYMSILG-MTPGFGDKTFAVQGFGNVGLHSMRYLHRF 58
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 31.6 bits (71), Expect = 0.53
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 4/160 (2%)
Query: 191 KSIGPLTIVFTGSGNVSQGAQEIFQEL--PYEYVPPEMLQKVAEHGSNTKIYACEVRRRN 248
++ T+ G GNV+ GA + EL + G T+ +
Sbjct: 32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 91
Query: 249 YLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTLPDAKNLL 308
R K Y + + + N + + K + + K +
Sbjct: 92 ASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVD--LEQAKKIVANNVKYYI 149
Query: 309 RPNHMPWLPTSDGAPPLPHRLLGICDISADPGGSIEFMNE 348
+MP + ++ + + GG + E
Sbjct: 150 EVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFE 189
>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 150
Score = 30.3 bits (68), Expect = 0.66
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 628 SGLVRSADLVVSLLPYNLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITVLNE 687
L R ++ + +L + + F +HG ++ ++ + + RA G ++
Sbjct: 43 VHLYRQGEINL-ILNNEPNSIASYFAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHI 101
Query: 688 VGLDPGIDHLLAMECIDAAHLNGGKVESFVSYCGGL 723
D G + A GG + G
Sbjct: 102 ---DTGPME----LNLPAIKGIGGAPLYLIDRFGEG 130
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 31.0 bits (69), Expect = 0.77
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 700 MECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLNTLSSAKYLQNSQ 759
+ + L + + Y G L P C+ L F +P + L + +
Sbjct: 172 VPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFR-NPVQISQEQLLALETALYCT 230
Query: 760 VVDIPAGGELMRTARPL 776
+D P+ E++ R +
Sbjct: 231 HMDDPSPREMINNFRQV 247
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 30.1 bits (67), Expect = 0.93
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 564 ESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEF 609
+ VL++GAG + + + + L + + + E ++ +
Sbjct: 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL 68
Score = 28.1 bits (62), Expect = 4.2
Identities = 9/96 (9%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 462 ESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKDKFISFVQSDASKPIEEHN 521
+ VL++GAG + + + + L + + + ++ + + + +
Sbjct: 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN-----RTYERAVELARDLGGEAVRFDE 77
Query: 522 FSPAVQAAIIASNGELTPKFKYIEDLRQQSVKSRHK 557
+ + + + P D +++++ R +
Sbjct: 78 LVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDR 113
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 29.9 bits (66), Expect = 1.1
Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 18/142 (12%)
Query: 543 YIEDLRQQSVKSRHKADIQTEESRNVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDI 602
+ DL + S +LL+GAG SR + + +T+ +
Sbjct: 5 LLSDLERLSFIRPGL---------RILLIGAGGASRG-VLLPLLSLDCAVTITNRTVSRA 54
Query: 603 DKVTNEFGRVEATLIDVNNGGSDNLSGLVRSADLVVSLLPYNLHHHVAE--FCIQHGKNL 660
+++ F + + + DL+++ + + + H
Sbjct: 55 EELAKLFAHTGSIQALSMDELEGH------EFDLIINATSSGISGDIPAIPSSLIHPGIY 108
Query: 661 VTASYLSPEMMALHERAASAGI 682
+ G
Sbjct: 109 CYDMFYQKGKTPFLAWCEQRGS 130
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987
{Bacteroides vulgatus [TaxId: 821]}
Length = 126
Score = 29.0 bits (65), Expect = 1.5
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 179 DAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNTK 238
D Y++ N K + F G ++ + + +P VP + + VA + + K
Sbjct: 40 DKSYDVIFTNGDK------LEFDKKGIWTEVNCK-YSAVPVAVVPDAIKKYVATNYPDAK 92
Query: 239 IYACEVRRRNY 249
+ E + +Y
Sbjct: 93 MLKIERDKHDY 103
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 29.0 bits (64), Expect = 2.8
Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 22/148 (14%)
Query: 644 NLHHHVAEFCIQHGKNLVTASYLSPEMMALHERAASAGITVLNEVGL--DPGIDHLLA-- 699
N AE + H + S A + A + +L EVG +P DH+L+
Sbjct: 107 NSEATAAELHVVH----YDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRL 162
Query: 700 -----------MECIDAAHLNGGKVESFVSYCGGLPAPECSENPLRYKFSWSPRGVLLNT 748
+ L ++E F Y G L P C ++ L F+ + +
Sbjct: 163 HEIRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFN-RRAQISMGQ 221
Query: 749 LSSAKYLQNSQVVDIPAGGELMRTARPL 776
L K + + L++ R
Sbjct: 222 L--EKLQETLSSTEEDPSEPLVQNYRVP 247
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 29.1 bits (64), Expect = 3.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 23 PSNVKRLVRSGVKVIVQPS 41
NV R R GV+ IV PS
Sbjct: 346 RDNVDRAKRIGVQFIVAPS 364
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 29.0 bits (64), Expect = 3.5
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 10/161 (6%)
Query: 191 KSIGPLTIVFTGSGNVSQGAQEIFQEL--PYEYVPPEMLQKVAEHGSNTKIYACEVRRRN 248
I T+ G GNV + +++ V + G N ++
Sbjct: 27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTG 86
Query: 249 YLERIKGGGYDYQEYNENPSLYRSLFASKIAPYASIIINGIYWAVGSPKLLTLPDAKNLL 308
D E+ +NP L P A + A L A+ ++
Sbjct: 87 PALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNA-------GLVKARLVV 139
Query: 309 RPNHMPWLPTSDGAPPLPHRLLGICDISADPGGSIEFMNEC 349
+ P P ++ ++ + DI A+ GG I E
Sbjct: 140 EGANGPTTPEAERI-LYERGVVVVPDILANAGGVIMSYLEW 179
>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
{Bacteroides vulgatus [TaxId: 821]}
Length = 127
Score = 27.9 bits (62), Expect = 4.1
Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 178 RDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPEMLQKVAEHGSNT 237
+ Y++ L + + + F G + + +P ++P + + + + +
Sbjct: 40 QTTSYDVKLAD------GIELEFNSKGEWLE-IDCKNKSVPSTFIPQAISKYMKANYNGH 92
Query: 238 KIYACEVRRRNY 249
K E R+ Y
Sbjct: 93 KTVKIERNRKGY 104
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
{Thermotoga maritima [TaxId: 2336]}
Length = 253
Score = 28.7 bits (64), Expect = 4.1
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 217 LPYEYVPPEMLQKVAEHGSNTKIYACEVRRRNYLERIKGGGYDYQEYNENPSLYRSLFAS 276
L Y + +M +K++ H + + E+ Y+ E P S
Sbjct: 80 LRYYLMEKKMFKKISTHE--LRAREVMKIEKELFEK-------YRTAVEIPEELTKRGGS 130
Query: 277 KIAPYASIIINGIY 290
+ A+ +I +
Sbjct: 131 MYSTAAAHLIRDLE 144
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 28.8 bits (64), Expect = 5.4
Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 29/125 (23%)
Query: 567 NVLLLGAGYVSRPLIEYL--------------------------HRDENIHITLGSLLKE 600
+V L+ A +++ L + +I E
Sbjct: 27 HVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAME 86
Query: 601 DIDKVTNEFGRVEATLIDVNNGGSDNLSGLVRSADLVVS-LLPYNLHHHVAEFCIQHGKN 659
+ ++ N N DN +VV+ LP + +A+
Sbjct: 87 FLQEL-NSDVSGSFVEESPENL-LDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 144
Query: 660 LVTAS 664
L+
Sbjct: 145 LLICR 149
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 28.3 bits (63), Expect = 6.9
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 172 MARQAIRDAGYEISLGNMPKSIGPLTIVFTGSGNVSQGAQEIFQELPYEYVPPE 225
A + I D + G + + + + F + + +I Q LP+ Y E
Sbjct: 704 AALRRIMDDDDWVRFGGV---LRTVRVKFFDA----RPPDDILQGLPFSYDTNE 750
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 26.9 bits (59), Expect = 7.0
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 866 ENLKNIVADKVGNTGLEALEALGLLNDDIIVQKQNTPIDTLSHFLRQKLNIRLVDYEKLV 925
+ +K ++ + V LE+L A G +I K + L +R + + +
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAG--YTNIEFHKGALDDEQLKESIRDA-HFIGLRSRTHL 59
Query: 926 DDEGNRVVAFGKYAGVAGMVNILHGL------GLRLLALGHHTPFMHIGPAHNYRNSMMA 979
++ G + L G+ + + PF A +A
Sbjct: 60 TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVF----NAPFSSTQEAQENIGLEVA 115
Query: 980 RQAIRDAGYEISLG 993
+ I+ + +L
Sbjct: 116 GKLIKYSDNGSTLS 129
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 26.7 bits (59), Expect = 9.8
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 567 NVLLLGAGYVSRPLIEYLHRDENIHITLGSLLKEDIDKVTNEFGRVEATLIDVNNGGSDN 626
+ ++G G + L +Y E+ + D + GR + + D
Sbjct: 5 GLCIVGMGRLGSALADYPGFGESFELRGF------FDVDPEKVGRPVRGGVIEH---VDL 55
Query: 627 LSGLVRS-ADLVVSLLPYNLHHHVAEFCIQHG 657
L V ++ + +P A+ + G
Sbjct: 56 LPQRVPGRIEIALLTVPREAAQKAADLLVAAG 87
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 27.4 bits (60), Expect = 10.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 25 NVKRLVRSGVKVIVQPS 41
+++ L ++GVK +V P
Sbjct: 250 SLEILAQAGVKAVVAPL 266
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,456,258
Number of extensions: 218075
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 35
Length of query: 1201
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1105
Effective length of database: 1,089,516
Effective search space: 1203915180
Effective search space used: 1203915180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)