Query psy12818
Match_columns 532
No_of_seqs 345 out of 1688
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:37:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 6.4E-88 1.4E-92 670.0 27.8 310 215-525 7-316 (321)
2 KOG0819|consensus 100.0 6.5E-73 1.4E-77 562.7 19.6 304 127-453 4-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 1.8E-16 3.9E-21 125.9 6.5 66 229-294 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.6 9E-16 2E-20 121.9 6.6 66 301-366 1-66 (66)
5 smart00335 ANX Annexin repeats 99.4 8.1E-13 1.8E-17 100.3 4.8 53 242-294 1-53 (53)
6 smart00335 ANX Annexin repeats 99.2 9.7E-12 2.1E-16 94.4 4.6 53 314-366 1-53 (53)
7 PF05664 DUF810: Protein of un 47.2 3.8E+02 0.0082 31.1 14.1 121 144-269 152-298 (677)
8 PF01992 vATP-synt_AC39: ATP s 41.1 1.2E+02 0.0027 31.1 8.6 47 459-507 172-219 (337)
9 TIGR02923 AhaC ATP synthase A1 39.2 4.5E+02 0.0097 27.0 14.6 33 475-508 193-226 (343)
10 PF14003 YlbE: YlbE-like prote 29.7 58 0.0013 25.8 2.9 35 403-438 13-47 (65)
11 PF09150 Carot_N: Orange carot 27.7 1.7E+02 0.0037 27.3 6.0 85 45-156 54-139 (159)
12 PF13043 DUF3903: Domain of un 26.0 57 0.0012 22.7 1.9 17 491-507 10-26 (40)
13 PF04894 DUF650: Archaeal prot 24.7 26 0.00056 35.7 0.1 29 3-31 202-230 (273)
14 PF10098 DUF2336: Uncharacteri 21.8 7.9E+02 0.017 24.3 15.8 205 243-467 12-227 (262)
15 COG1283 NptA Na+/phosphate sym 21.2 1.2E+02 0.0025 34.0 4.3 112 409-530 408-519 (533)
16 KOG0181|consensus 21.0 1.1E+02 0.0023 29.7 3.4 64 57-131 77-151 (233)
17 PF14003 YlbE: YlbE-like prote 20.2 2.2E+02 0.0047 22.7 4.4 32 324-355 17-48 (65)
No 1
>KOG0819|consensus
Probab=100.00 E-value=6.4e-88 Score=669.99 Aligned_cols=310 Identities=45% Similarity=0.700 Sum_probs=305.8
Q ss_pred CCccccCCCCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHhCccchhhcHHHHHhhhcchhHHHHHHHH
Q psy12818 215 EPTIRRTNDPFNASEDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFEDLVKAL 294 (532)
Q Consensus 215 ~~~~~~~~~~~~~~~DA~~L~~A~kg~GTdE~~lieIL~~rs~~q~~~I~~~Y~~~yg~dL~~~I~se~SG~~~~ll~~l 294 (532)
.+++.|.++ |+|..||+.|++||+||||||.+||+||+.|||.||+.|+++|+..||+||.++|++|+||+|++++++|
T Consensus 7 ~~t~~~~~~-f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 7 AGTVVPAPV-FDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CcccCCCCC-CChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 366778887 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhhHHHHHHHcCCCCCccchhHhhhcCCHHHHHHHHHHhHhhhccchhHhhhhcchhhHHHHHHHHHhcccCCC
Q psy12818 295 MKSPVDFMCSEIHRALTGLMFDANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALDVTKGDYRRLVTLILTGTRDPP 374 (532)
Q Consensus 295 l~~~~~~dA~~L~~A~kg~Gtde~~Li~IL~tRs~~el~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~ll~~~r~e~ 374 (532)
+.+|+++||..|++||||.|||+++||||+|||||.||++|+++|+..|++||+++|.++|||+|+++|++|+++.|++.
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~ 165 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEG 165 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCChhhHHHHhhccCHHHHHHHHHHhhcccCCCHHHHHHhcccccHHHHHHHHHHHh
Q psy12818 375 GKVNPEKAKELSKELYIAGEGKLGTDEAEFVKVFGHQSYEQLALVFESYKVEKGRTIEQALKAELSGELLDLTLAIVECI 454 (532)
Q Consensus 375 ~~vd~~~a~~dA~~L~~A~~~~~gtde~~lirIl~~rs~~~L~~I~~~Y~~~yG~sL~~~I~~e~sGd~~~aLlalv~~~ 454 (532)
..||+.+|++||+.||+|+++++|||+..|++||++||..||+.++.+|++.+|++|+++|++++|||++++|+++++|+
T Consensus 166 ~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~ 245 (321)
T KOG0819|consen 166 DRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCI 245 (321)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhccCCCCccchhhhehhcchhcHHHHHHHHHHHhCccHHHHhhhcCCcchhHhhhhc
Q psy12818 455 HNPVSYFAKQLYRAMKGLGTDKQTLIRIIVSRSEIDLGNIKKEYERLFNKTLESHVKKKKKKNNNNNNNNN 525 (532)
Q Consensus 455 ~~p~~~~A~~l~~Am~G~Gtdd~~LiRilvsR~e~dl~~Ik~~y~~~ygksL~~~I~~etsG~Y~~~l~~~ 525 (532)
+|||.|||++||.||+|.||||++||||+|||||+||..||.+|+++||+||.++|+++|||||+++|+.+
T Consensus 246 ~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL 316 (321)
T KOG0819|consen 246 RNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLAL 316 (321)
T ss_pred cCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976
No 2
>KOG0819|consensus
Probab=100.00 E-value=6.5e-73 Score=562.66 Aligned_cols=304 Identities=27% Similarity=0.403 Sum_probs=285.0
Q ss_pred cCCCCccccCCCCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCCchhhHHHhhcCCh
Q psy12818 127 FQGEPTIRRTNDPFNASEDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEYVFRKCNRNPFGPQSSSVVQLFAGHP 206 (532)
Q Consensus 127 ~~~~pti~~~~~~fd~~~Da~~L~~A~kG~GtDE~~LieIL~~Rsn~qr~~I~~~Y~~~~~~~l~~~l~~~l~~~~~g~~ 206 (532)
+.+.|+++| .|+|+|..||+.|++||+|+||||++||+||++|||+|||.|+++|+..||++|.++|+++ ++|+|
T Consensus 4 ~~~~~t~~~-~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~E----LsG~F 78 (321)
T KOG0819|consen 4 AGMAGTVVP-APVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSE----LSGDF 78 (321)
T ss_pred cCCCcccCC-CCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHH----hCccH
Confidence 344566655 6899999999999999999999999999999999999999999999999999988877766 89999
Q ss_pred hhHHhhcCCCccccCCCCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHhCccchhhcHHHHHhhhcchh
Q psy12818 207 VHILTFQGEPTIRRTNDPFNASEDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGD 286 (532)
Q Consensus 207 ~~ll~~~~~~~~~~~~~~~~~~~DA~~L~~A~kg~GTdE~~lieIL~~rs~~q~~~I~~~Y~~~yg~dL~~~I~se~SG~ 286 (532)
+.++.+ | +.| +++.||++|++||||+||||.+||||||+|||.|+++|+++|+..|+++|++||.++|||+
T Consensus 79 e~~i~a---l-~~~-----p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~ 149 (321)
T KOG0819|consen 79 ERAIVA---L-MKP-----PAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGD 149 (321)
T ss_pred HHHHHH---H-cCC-----HHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCch
Confidence 997764 2 233 3788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-----------chhhhHHHHHHHc-CCCCCccchhHhhhcCCHHHHHHHHHHhHhhhccchhHhhhhc
Q psy12818 287 FEDLVKALMKSP-----------VDFMCSEIHRALT-GLMFDANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALDV 354 (532)
Q Consensus 287 ~~~ll~~ll~~~-----------~~~dA~~L~~A~k-g~Gtde~~Li~IL~tRs~~el~~I~~~Y~~~yg~sL~~~I~~e 354 (532)
|+++|+.|+++. +..||+.|++|.+ .+|||+..++.||++||..||+.++++|+..+|+++++.|+.+
T Consensus 150 frklLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e 229 (321)
T KOG0819|consen 150 FRKLLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEE 229 (321)
T ss_pred HHHHHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhc
Confidence 999999999752 5689999999986 5899999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHhccCCCCCChhhHHHHhhccCHHHHHHHHHHhhcccCCCHHHH
Q psy12818 355 TKGDYRRLVTLILTGTRDPPGKVNPEKAKELSKELYIAGEGKLGTDEAEFVKVFGHQSYEQLALVFESYKVEKGRTIEQA 434 (532)
Q Consensus 355 ~sG~~~~lLl~ll~~~r~e~~~vd~~~a~~dA~~L~~A~~~~~gtde~~lirIl~~rs~~~L~~I~~~Y~~~yG~sL~~~ 434 (532)
+||+++.+|+++++|.++++.+ ||+.||.||+| .|||+.+||||+++||+.+|..|+.+|+++||+||.++
T Consensus 230 ~~gd~~~~llaiv~c~~n~~~y--------FA~~L~~amkg-~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~ 300 (321)
T KOG0819|consen 230 FSGDFEKLLLAIVKCIRNPPAY--------FAERLRKAMKG-LGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSA 300 (321)
T ss_pred cCchHHHHHHHHHHHHcCHHHH--------HHHHHHHHHhc-cCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHH
Confidence 9999999999999999999887 99999999988 89999999999999999999999999999999999999
Q ss_pred HHhcccccHHHHHHHHHHH
Q psy12818 435 LKAELSGELLDLTLAIVEC 453 (532)
Q Consensus 435 I~~e~sGd~~~aLlalv~~ 453 (532)
|++++||||+++|++|++.
T Consensus 301 I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 301 IKGDTSGDYKKALLALLGG 319 (321)
T ss_pred HhhhccchHHHHHHHHhCC
Confidence 9999999999999999863
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.65 E-value=1.8e-16 Score=125.90 Aligned_cols=66 Identities=44% Similarity=0.613 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHhCccchhhcHHHHHhhhcchhHHHHHHHH
Q psy12818 229 EDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFEDLVKAL 294 (532)
Q Consensus 229 ~DA~~L~~A~kg~GTdE~~lieIL~~rs~~q~~~I~~~Y~~~yg~dL~~~I~se~SG~~~~ll~~l 294 (532)
.||+.|++|++|+|+||..|++||++||+.|+++|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.61 E-value=9e-16 Score=121.87 Aligned_cols=66 Identities=32% Similarity=0.519 Sum_probs=63.4
Q ss_pred hhhHHHHHHHcCCCCCccchhHhhhcCCHHHHHHHHHHhHhhhccchhHhhhhcchhhHHHHHHHH
Q psy12818 301 FMCSEIHRALTGLMFDANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALDVTKGDYRRLVTLI 366 (532)
Q Consensus 301 ~dA~~L~~A~kg~Gtde~~Li~IL~tRs~~el~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~l 366 (532)
+||+.|++|++|+|+|+..|++|||+||+.|+++|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999976
No 5
>smart00335 ANX Annexin repeats.
Probab=99.35 E-value=8.1e-13 Score=100.32 Aligned_cols=53 Identities=45% Similarity=0.642 Sum_probs=51.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHhCccchhhcHHHHHhhhcchhHHHHHHHH
Q psy12818 242 GTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFEDLVKAL 294 (532)
Q Consensus 242 GTdE~~lieIL~~rs~~q~~~I~~~Y~~~yg~dL~~~I~se~SG~~~~ll~~l 294 (532)
||||..|++|+|+||+.|+++|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.23 E-value=9.7e-12 Score=94.38 Aligned_cols=53 Identities=32% Similarity=0.533 Sum_probs=51.3
Q ss_pred CCCccchhHhhhcCCHHHHHHHHHHhHhhhccchhHhhhhcchhhHHHHHHHH
Q psy12818 314 MFDANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALDVTKGDYRRLVTLI 366 (532)
Q Consensus 314 Gtde~~Li~IL~tRs~~el~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~lLl~l 366 (532)
|||+..|++|+|+||+.|+.+|+++|+..||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999864
No 7
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=47.19 E-value=3.8e+02 Score=31.10 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCCCchhhHHHhhcCCh------hhHHhhcCCCc
Q psy12818 144 EDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEYVFRKCNRNPFGPQSSSVVQLFAGHP------VHILTFQGEPT 217 (532)
Q Consensus 144 ~Da~~L~~A~kG~GtDE~~LieIL~~Rsn~qr~~I~~~Y~~~~~~~l~~~l~~~l~~~~~g~~------~~ll~~~~~~~ 217 (532)
..|..|++.+.+.-.|+.----+=++.+++-++.|+...-....++-......+..-+..|.. +.||...+..
T Consensus 152 ~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~- 230 (677)
T PF05664_consen 152 ASAQRLRQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDI- 230 (677)
T ss_pred hhHHHHHHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcc-
Confidence 567889999988444433222233445566678888887777766433333333333333322 3344322111
Q ss_pred cccCCCCCChHHHHHHHHHHHhC----CCCCHH----HHHHHhcCC------------CHHHHHHHHHhCcc
Q psy12818 218 IRRTNDPFNASEDVQALRAAMKG----LGTNET----VIRQILTRR------------TNKQRLEILEKYPI 269 (532)
Q Consensus 218 ~~~~~~~~~~~~DA~~L~~A~kg----~GTdE~----~lieIL~~r------------s~~q~~~I~~~Y~~ 269 (532)
..+ -..-.++.++-+-+|. +|.++. .+.-+|... +..|++.|...+++
T Consensus 231 ---~de-~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ev~~d~~~ 298 (677)
T PF05664_consen 231 ---LDE-GQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQEVAKDAKR 298 (677)
T ss_pred ---ccc-chHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc
Confidence 110 1133466666666653 588753 222222222 56778888877773
No 8
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=41.15 E-value=1.2e+02 Score=31.06 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=26.4
Q ss_pred hhHHHHHHhhhccCCCCccchhhhehhcchhcHHHHHHHHHHH-hCccHH
Q psy12818 459 SYFAKQLYRAMKGLGTDKQTLIRIIVSRSEIDLGNIKKEYERL-FNKTLE 507 (532)
Q Consensus 459 ~~~A~~l~~Am~G~Gtdd~~LiRilvsR~e~dl~~Ik~~y~~~-ygksL~ 507 (532)
.||...+..+. ..+..+...++-++ +.++|+.+|+-.|+-+ ||.+-.
T Consensus 172 ~yy~~~~~~~~-~~~~~~~~~l~~~~-~~~iD~~Ni~~~~R~k~~~~~~~ 219 (337)
T PF01992_consen 172 RYYEDLLKAAK-KLSGSEREILRELL-GMEIDLTNIKTILRAKKYGLSPE 219 (337)
T ss_dssp HHHHHHHHHHH----TSS-HHHHHHH-HHHHHHHHHHHHHHTTTS---GG
T ss_pred HHHHHHHHHhh-ccccchHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCHh
Confidence 45666666665 44455555665555 5788888888888843 565443
No 9
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=39.16 E-value=4.5e+02 Score=27.03 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=21.0
Q ss_pred CccchhhhehhcchhcHHHHHHHHHH-HhCccHHH
Q psy12818 475 DKQTLIRIIVSRSEIDLGNIKKEYER-LFNKTLES 508 (532)
Q Consensus 475 dd~~LiRilvsR~e~dl~~Ik~~y~~-~ygksL~~ 508 (532)
.+..+++-++ +.++|+.+|+..++- +||.+-++
T Consensus 193 ~~~~~l~~~~-~~eiD~~Nl~~ilr~k~~~~~~e~ 226 (343)
T TIGR02923 193 DETKLFTEFI-KTEVDIRNLKTLLRLKAAGLSPDE 226 (343)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3444555555 567888888888875 56666554
No 10
>PF14003 YlbE: YlbE-like protein
Probab=29.70 E-value=58 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=30.1
Q ss_pred hHHHHhhccCHHHHHHHHHHhhcccCCCHHHHHHhc
Q psy12818 403 EFVKVFGHQSYEQLALVFESYKVEKGRTIEQALKAE 438 (532)
Q Consensus 403 ~lirIl~~rs~~~L~~I~~~Y~~~yG~sL~~~I~~e 438 (532)
.+-|+|+ |.|.++.+...++...||+++-+.|++-
T Consensus 13 ~WYR~Ls-R~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 13 IWYRILS-RNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455665 9999999999999999999999999864
No 11
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=27.65 E-value=1.7e+02 Score=27.34 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred hhhHHHHHHhhcCCCCCChhh-HHHHhhcCCHHHHHHHHHHHHHHhhhcHHHHHhcCCcccccccccCCCcccccCCccc
Q psy12818 45 IAYYTKQLYRSMRGPGTDDAT-LMRILISRSEIDLENIKREFERRYERTLKSAIEVGETEHRRSQVRFPPLYSIAGHPVH 123 (532)
Q Consensus 45 ~~~fa~~l~~amkG~Gtde~~-li~il~~r~~~~~~~I~~~y~~~y~~~L~~~i~~~~~~~~~~~~~~~~l~~l~g~~~~ 123 (532)
..-||+-|.+-+|.+.-+|+. +.|=|++|..- .|.++| |. |..-.|- ++|. .
T Consensus 54 ~~~~ae~ll~qik~ms~~EQlq~MrDL~~~~dt---~isR~Y----~~-ls~n~KL---~fWY---------~------- 106 (159)
T PF09150_consen 54 RMQLAEGLLNQIKQMSQEEQLQAMRDLANRADT---PISRAY----GA-LSANTKL---GFWY---------Q------- 106 (159)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHHHHT------HHHHHH----HC-C-HHHHH---HHHH---------H-------
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC---HHHHHH----hc-cCCcchH---HHHH---------H-------
Confidence 456899999999999888876 67778888773 334444 41 2111211 1221 1
Q ss_pred ccccCCCCccccCCCCCChHHHHHHHHHHHhCC
Q psy12818 124 ILTFQGEPTIRRTNDPFNASEDVQALRAAMKGL 156 (532)
Q Consensus 124 ~~~~~~~pti~~~~~~fd~~~Da~~L~~A~kG~ 156 (532)
..-||..++|.|.+++|....++..+-.+++++
T Consensus 107 Lae~M~~G~VipvP~~Y~ls~~a~~vl~~I~~L 139 (159)
T PF09150_consen 107 LAEGMEQGTVIPVPSGYQLSENANEVLEAIKQL 139 (159)
T ss_dssp HHHHHHTTSS--S-TT----HHHHHHHHHHHCS
T ss_pred HHHHhcCCcEecCCCCCCcCHHHHHHHHHHHcC
Confidence 233666778888788999999999999999987
No 12
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=26.03 E-value=57 Score=22.75 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCccHH
Q psy12818 491 LGNIKKEYERLFNKTLE 507 (532)
Q Consensus 491 l~~Ik~~y~~~ygksL~ 507 (532)
++.++.+-+++|||+|.
T Consensus 10 i~kvr~eckrrfgktll 26 (40)
T PF13043_consen 10 IQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHhchhhh
Confidence 67899999999999985
No 13
>PF04894 DUF650: Archaeal protein of unknown function (DUF650); InterPro: IPR006978 This conserved region is found in the N-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=24.66 E-value=26 Score=35.73 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.7
Q ss_pred cccccccccchhhhhHHHhhcccccCCCC
Q psy12818 3 RNTRLMPTTYAQTAVCQIVGKSLRYLVPP 31 (532)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (532)
+|.||.||-++-|||-.++||.|...+=.
T Consensus 202 ~~RkLVPTRWSITAVDd~ig~~L~~~Ik~ 230 (273)
T PF04894_consen 202 KKRKLVPTRWSITAVDDTIGKYLRKEIKD 230 (273)
T ss_pred CccccCCCCceehhHHHHHHHHHHHHHhc
Confidence 78999999999999999999998866543
No 14
>PF10098 DUF2336: Uncharacterized protein conserved in bacteria (DUF2336); InterPro: IPR019285 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.79 E-value=7.9e+02 Score=24.31 Aligned_cols=205 Identities=17% Similarity=0.170 Sum_probs=108.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCccchhhcHHHHHhhhc--chhHHHHHHHHhcCCchhhhHHHHHHH-cCCCCCccc
Q psy12818 243 TNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSEL--SGDFEDLVKALMKSPVDFMCSEIHRAL-TGLMFDANT 319 (532)
Q Consensus 243 TdE~~lieIL~~rs~~q~~~I~~~Y~~~yg~dL~~~I~se~--SG~~~~ll~~ll~~~~~~dA~~L~~A~-kg~Gtde~~ 319 (532)
-++..|++|..+.++.++.+|.. ..+|...|...+ .|+ ..++..++.++....+..-...+ +.. .++..
T Consensus 12 L~d~dL~~~a~~~~~~~~~aiA~------R~~ls~~v~~~l~~~g~-~~~~~~L~~N~~A~~~~~~~~~l~~r~-~~~~~ 83 (262)
T PF10098_consen 12 LSDDDLVEIARSGGQEHRLAIAR------RPDLSEAVTDALAERGD-AEVVRALLANPGARISEASLDRLVERA-GDDPA 83 (262)
T ss_pred CCHHHHHHHHHhCCHHHHHHHhC------CCCCCHHHHHHHHHhCC-cHHHHHHhcCCCCCCCHHHHHHHHHHH-ccCHH
Confidence 46788999999999999999986 245555554433 344 46667777776544444443433 333 34556
Q ss_pred hhHhhhcCCH---HHHHHHHHHhHhhhccchhHhhhhcc---hhhHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHH
Q psy12818 320 LTEILVTKTN---AEIKEIVQNYETLYKRPLVEHALDVT---KGDYRRLVTLILTGTRDP--PGKVNPEKAKELSKELYI 391 (532)
Q Consensus 320 Li~IL~tRs~---~el~~I~~~Y~~~yg~sL~~~I~~e~---sG~~~~lLl~ll~~~r~e--~~~vd~~~a~~dA~~L~~ 391 (532)
|-+.|..|.. ...+.+...- ...+.+.+.... .+...+++-........+ ....+...++..+..|+.
T Consensus 84 l~~~l~~R~dLp~~~~~~L~~~v----~~~lr~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~a~~~v~~l~~ 159 (262)
T PF10098_consen 84 LREALLRRPDLPPEVRRRLLWWV----SEALRARLLSRFALDAERAQRLAAEARERAAAELAEDSRDRERARRLVRHLRR 159 (262)
T ss_pred HHHhhcccccCCHHHHHHHHhhc----cHHHHHHHHhccccchHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 6677777743 2222222211 122222221111 111112221111111110 112344557777777777
Q ss_pred hccCCCCCChhhHHHHhhccCHHHHHHHHHHhhcccCCCHHHHHHhcccccHHHHHHHHHHHhcCChhhHHHHHHh
Q psy12818 392 AGEGKLGTDEAEFVKVFGHQSYEQLALVFESYKVEKGRTIEQALKAELSGELLDLTLAIVECIHNPVSYFAKQLYR 467 (532)
Q Consensus 392 A~~~~~gtde~~lirIl~~rs~~~L~~I~~~Y~~~yG~sL~~~I~~e~sGd~~~aLlalv~~~~~p~~~~A~~l~~ 467 (532)
.+. .++..+.+.++.....+ +..+.....|.+... +.+-+...-.++|..+++.+-=|...|...+..
T Consensus 160 ~g~----L~~~lL~~a~~~g~~~~---f~aaLA~lsgl~~~~-v~~il~d~~~~~L~~l~kaaGL~~~~~~~~~~~ 227 (262)
T PF10098_consen 160 RGR----LTEALLLRAACSGRLAF---FAAALAELSGLPPAR-VRRILADGGGEALAALCKAAGLPWATFPAFLAA 227 (262)
T ss_pred cCC----CCHHHHHHHHHcCCHHH---HHHHHHHHHCcCHHH-HHHHHhCCCchHHHHHHHHcCCCHHHHHHHHHH
Confidence 542 36778888887664443 444555566766644 344444555567777777766666665444443
No 15
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=21.20 E-value=1.2e+02 Score=34.05 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=69.4
Q ss_pred hccCHHHHHHHHHHhhcccCCCHHHHHHhcccccHHHHHHHHHHHhcCChhhHHHHHHhhhccCCCCccchhhhehhcch
Q psy12818 409 GHQSYEQLALVFESYKVEKGRTIEQALKAELSGELLDLTLAIVECIHNPVSYFAKQLYRAMKGLGTDKQTLIRIIVSRSE 488 (532)
Q Consensus 409 ~~rs~~~L~~I~~~Y~~~yG~sL~~~I~~e~sGd~~~aLlalv~~~~~p~~~~A~~l~~Am~G~Gtdd~~LiRilvsR~e 488 (532)
..++-+|...+-..+.....+.+.. +..+|-+..+-|..+.+. -.+.++.|+..+-+.|..+.|.+| +.+
T Consensus 408 ~a~~lE~IgDiie~l~~~~~kk~~~--~~~fse~~~~el~~l~~~-------~~~n~~~a~~~l~~~D~~~ar~lv-~~k 477 (533)
T COG1283 408 AAINLEHIGDIIERLLELADKKIAN--GRAFSEDGLEELDALFAL-------TLENLRLAISVLVTGDLELARRLV-ERK 477 (533)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHH-HHH
Confidence 4566666655555433221111111 123555555556555543 345678889999999999999999 455
Q ss_pred hcHHHHHHHHHHHhCccHHHHhhhcCCcchhHhhhhcCcccc
Q psy12818 489 IDLGNIKKEYERLFNKTLESHVKKKKKKNNNNNNNNNNKNIN 530 (532)
Q Consensus 489 ~dl~~Ik~~y~~~ygksL~~~I~~etsG~Y~~~l~~~~~~~~ 530 (532)
.++.+...++.+.+=+.|.+--++--+|++==.+++..|.||
T Consensus 478 ~~~r~~e~~~~k~H~~Rl~~g~~s~~t~~l~lDii~dlkrIn 519 (533)
T COG1283 478 KRVRRLERRSSKRHLDRLRDGAASVETSSLHLDILRDLKRIN 519 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhhchhHHHHHHHHHHHH
Confidence 667777777777776667766556556665555666666665
No 16
>KOG0181|consensus
Probab=20.97 E-value=1.1e+02 Score=29.67 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhhhc-----HHHHHhc-----CCcccccccccCCCcccccCCcc-ccc
Q psy12818 57 RGPGTDDATLMRILISRSEIDLENIKREFERRYERT-----LKSAIEV-----GETEHRRSQVRFPPLYSIAGHPV-HIL 125 (532)
Q Consensus 57 kG~Gtde~~li~il~~r~~~~~~~I~~~y~~~y~~~-----L~~~i~~-----~~~~~~~~~~~~~~l~~l~g~~~-~~~ 125 (532)
.|+|.|-..|++. -.+|.+.|...|+.. |...+.+ -.+++.|- |...+.++|+.. ..+
T Consensus 77 SGmgpD~RvlV~~--------~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrP---FGvslliaG~~~~~p~ 145 (233)
T KOG0181|consen 77 SGMGPDYRVLVHK--------SRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRP---FGVSLLIAGWDEGGPL 145 (233)
T ss_pred ecCCCceeehhhH--------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccc---cceEEEEeecCCCcee
Confidence 4889997666633 467899999999976 4444433 22334332 344556677655 334
Q ss_pred ccCCCC
Q psy12818 126 TFQGEP 131 (532)
Q Consensus 126 ~~~~~p 131 (532)
+++..|
T Consensus 146 LyQvdP 151 (233)
T KOG0181|consen 146 LYQVDP 151 (233)
T ss_pred EEEECC
Confidence 455444
No 17
>PF14003 YlbE: YlbE-like protein
Probab=20.19 E-value=2.2e+02 Score=22.68 Aligned_cols=32 Identities=9% Similarity=0.349 Sum_probs=28.2
Q ss_pred hhcCCHHHHHHHHHHhHhhhccchhHhhhhcc
Q psy12818 324 LVTKTNAEIKEIVQNYETLYKRPLVEHALDVT 355 (532)
Q Consensus 324 L~tRs~~el~~I~~~Y~~~yg~sL~~~I~~e~ 355 (532)
..+|.|.++.+.-.++..-|++++-+.|..-.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45899999999999999999999999997543
Done!