RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12818
(532 letters)
>gnl|CDD|201070 pfam00191, Annexin, Annexin. This family of annexins also includes
giardin that has been shown to function as an annexin.
Length = 66
Score = 80.2 bits (199), Expect = 8e-19
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 229 EDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFE 288
D + LRAAMKGLGT+E + +IL R+N Q I E Y +DL D+KSE SGDFE
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFE 60
Query: 289 DLVKAL 294
L+ AL
Sbjct: 61 KLLLAL 66
Score = 76.3 bits (189), Expect = 1e-17
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 460 YFAKQLYRAMKGLGTDKQTLIRIIVSRSEIDLGNIKKEYERLFNKTLESHVKK 512
Y A+ L AMKGLGTD+ TLIRI+ +RS L I++ Y++L+ K LE +K
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIKS 53
Score = 62.8 bits (154), Expect = 9e-13
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 50 KQLYRSMRGPGTDDATLMRILISRSEIDLENIKREFERRYERTLKSAIEVGET 102
+ L +M+G GTD+ TL+RIL +RS L+ I+ +++ Y + L+ I+ ET
Sbjct: 4 ELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIK-SET 55
Score = 61.3 bits (150), Expect = 3e-12
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 388 ELYIAGEGKLGTDEAEFVKVFGHQSYEQLALVFESYKVEKGRTIEQALKAELSGELLDLT 447
EL A LGTDE +++ +S QL + E+YK G+ +E+ +K+E SG+ L
Sbjct: 4 ELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFEKLL 63
Query: 448 LAI 450
LA+
Sbjct: 64 LAL 66
Score = 53.2 bits (129), Expect = 2e-09
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 305 EIHRALTGLMFDANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALDV-TKGDYRRLV 363
+ A+ GL D +TL IL T++NA+++ I + Y+ LY + L E + T GD+ +L+
Sbjct: 5 LLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDL-EKDIKSETSGDFEKLL 63
Query: 364 TLI 366
+
Sbjct: 64 LAL 66
Score = 48.2 bits (116), Expect = 2e-07
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 144 EDVQALRAAMKGLGTNETVIRQILTRRTNKQRLEILE 180
D + LRAAMKGLGT+E + +IL R+N Q I E
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIRE 37
>gnl|CDD|197661 smart00335, ANX, Annexin repeats.
Length = 53
Score = 63.6 bits (156), Expect = 4e-13
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 242 GTNETVIRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFEDLVKAL 294
GT+E + +IL R+N Q I + Y +DL D+KSE SGDFE L+ AL
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
Score = 57.4 bits (140), Expect = 6e-11
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 473 GTDKQTLIRIIVSRSEIDLGNIKKEYERLFNKTLESHVKK 512
GTD++TLI I+ SRS L IK+ Y++ + K LE +K
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKS 40
Score = 55.5 bits (135), Expect = 3e-10
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 60 GTDDATLMRILISRSEIDLENIKREFERRYERTLKSAIEVGET 102
GTD+ TL+ IL SRS L+ IK+ +++RY + L+ I+ ET
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIK-SET 42
Score = 48.9 bits (118), Expect = 5e-08
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 398 GTDEAEFVKVFGHQSYEQLALVFESYKVEKGRTIEQALKAELSGELLDLTLAI 450
GTDE +++ +S QL + ++YK G+ +E +K+E SG+ L LA+
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
Score = 48.6 bits (117), Expect = 7e-08
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 316 DANTLTEILVTKTNAEIKEIVQNYETLYKRPLVEHALD-VTKGDYRRLVTLI 366
D TL EIL +++NA+++ I Q Y+ Y + L E + T GD+ +L+ +
Sbjct: 3 DEKTLIEILASRSNAQLQAIKQAYKKRYGKDL-EDDIKSETSGDFEKLLLAL 53
Score = 31.2 bits (72), Expect = 0.094
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 157 GTNETVIRQILTRRTNKQRLEILE 180
GT+E + +IL R+N Q I +
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQ 24
>gnl|CDD|220292 pfam09563, RE_LlaJI, LlaJI restriction endonuclease. This family
includes the LlaJI (recognises GACGC) restriction
endonucleases.
Length = 368
Score = 32.7 bits (75), Expect = 0.49
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 490 DLGNIKKEYERLFNKTLESHVKKKKKKNNNNNNNNNNKNIN 530
D NI+++ +L +K L + K+K + NN ++++
Sbjct: 24 DEENIREDIAKLVSKVLNKYSKEKPRIPEGFNNEADSQSDF 64
>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase
is a prototypical Nudix hydrolase that catalyzes the
hydrolysis of nucleoside and deoxynucleoside
triphosphates (NTPs and dNTPs) by substitution at a
beta-phosphorus to yield a nucleotide monophosphate
(NMP) and inorganic pyrophosphate (PPi). This enzyme
requires two divalent cations for activity; one
coordinates the phosphoryl groups of the NTP/dNTP
substrate, and the other coordinates to the enzyme. It
also contains the Nudix motif, a highly conserved
23-residue block (GX5EX7REUXEEXGU, where U = I, L or V),
that functions as metal binding and catalytic site. MutT
pyrophosphohydrolase is important in preventing errors
in DNA replication by hydrolyzing mutagenic nucleotides
such as 8-oxo-dGTP (a product of oxidative damage),
which can mispair with template adenine during DNA
replication, to guanine nucleotides.
Length = 124
Score = 30.5 bits (70), Expect = 0.70
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 424 KVEKGRTIEQALKAELSGELLDLTLAIVECI 454
KVE G T EQAL EL E L + + + E +
Sbjct: 36 KVEPGETPEQALVRELREE-LGIEVEVGELL 65
>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional.
Length = 312
Score = 31.8 bits (73), Expect = 0.77
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 424 KVEKGRTIEQALKAELSGEL 443
KVE G T+EQAL EL EL
Sbjct: 40 KVEPGETVEQALARELQEEL 59
>gnl|CDD|153041 pfam12607, DUF3772, Protein of unknown function (DUF3772). This
domain family is found in bacteria, and is approximately
60 amino acids in length. The family is found in
association with pfam00924.
Length = 64
Score = 27.2 bits (61), Expect = 3.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 248 IRQILTRRTNKQRLEILEKYPIELNRDLLSDLKSELSGDFEDL 290
I +I R + ++LE+ P LN S + L D L
Sbjct: 14 IDEIDKLRRARFTEQLLERGPSPLNPAFWSPAAAALPDDLRRL 56
>gnl|CDD|225553 COG3008, PqiB, Paraquat-inducible protein B [General function
prediction only].
Length = 553
Score = 30.0 bits (68), Expect = 4.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 288 EDLVKALMKSPVDFMCSEIHRALTGLMFDANTLTEIL 324
+L++ L K P+DF+ +++ L+GL F + +L
Sbjct: 429 AELLRKLNKLPLDFVVNDVTVTLSGLQFTLKSAQTLL 465
>gnl|CDD|218317 pfam04894, DUF650, Archaeal protein of unknown function (DUF650).
This family represents the amino terminal region of an
archaeal protein of unknown function.
Length = 271
Score = 29.1 bits (66), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 RNTRLMPTTYAQTAVCQIVGKSLR 26
+ RL+PT ++ TAV +G LR
Sbjct: 200 KKRRLVPTRWSITAVDDTIGDYLR 223
>gnl|CDD|173064 PRK14600, ruvA, Holliday junction DNA helicase RuvA; Provisional.
Length = 186
Score = 28.6 bits (64), Expect = 6.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 235 RAAMKGLGTNETVIRQILTRRTNK-QRLEILEKYPIELNRDLLSDLKS 281
+AA+K G E +I +I+T K +LEI E I +N D L+ L S
Sbjct: 107 KAALKVNGIGEKLINRIITELQYKVSKLEINETNFIIINDDALAALIS 154
>gnl|CDD|185671 PTZ00494, PTZ00494, tuzin-like protein; Provisional.
Length = 664
Score = 28.9 bits (64), Expect = 7.2
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 440 SGELLDLTLAIVECIHNPVSYFAKQLYRAMKGLGTDKQTLIR-------IIVSRSEIDLG 492
S L+ L + C+H+P A L +G ++ L+ + VSR E+D
Sbjct: 219 SARLVALVNWLRSCVHDPRDVEAIALVLFSRGWRAERMYLLEGVDLLPFVFVSRVELDSV 278
Query: 493 NIKKEYERLFNKTLESHVKKKKKKNN 518
+ K +ER +K ++ +++ K N
Sbjct: 279 SEKARWERDHDKAMQMLRRERVKDTN 304
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 29.2 bits (66), Expect = 7.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 132 TIRRTNDPFNASEDVQALRAAMKGLGTN 159
+IRR +D +NA E+++A + + G +
Sbjct: 487 SIRRRSDAYNAREEIKAKKKQRESGGGD 514
Score = 29.2 bits (66), Expect = 7.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 217 TIRRTNDPFNASEDVQALRAAMKGLGTN 244
+IRR +D +NA E+++A + + G +
Sbjct: 487 SIRRRSDAYNAREEIKAKKKQRESGGGD 514
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.8 bits (65), Expect = 8.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 497 EYERLF--NKTLESHVKKKKKKNNNNNNNNNNK 527
E E +F NK L+ +K + + NN NK
Sbjct: 205 EKEEIFKKNKILKEKLKSRSGISTNNKKEERNK 237
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a
family of class II aminoacyl-tRNA synthetase-like and
ATP phosphoribosyltransferase regulatory subunits.
Length = 308
Score = 28.7 bits (65), Expect = 8.3
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 235 RAAMKGLGTNETVIRQILTRRTNKQRLEI----LEKYPIELNRDLLSDLKSELSGDFEDL 290
RA ++ LG +E + K E+ E D L L EL GD E L
Sbjct: 157 RALLEALGLSEAQEEALRDALQRKDLPELEELLAELGLDPALADALLAL-PELYGDPEVL 215
Query: 291 VKAL 294
+AL
Sbjct: 216 DEAL 219
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 28.9 bits (65), Expect = 8.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 503 NKTLESHVKKKKKKNNNNNNNNNNKNIN 530
N L H+ ++N NNNNNN N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQI 28
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 28.4 bits (63), Expect = 8.7
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 294 LMKSPVDFMCSEIHRALTGLMFDANTLTEILVTKTNAEIKEIVQNYETLYKRP-----LV 348
L +P F + + +G AN+ T I+ T T ++++EI + YK P V
Sbjct: 67 LFTAPASFKIKQAAKIKSG---SANSKTTIVGTITLSQLEEIAK-----YKLPDLNTDDV 118
Query: 349 EHALDVTKGDYRRLVTLILTGTRDPPGKVNPEKAKELSKELYIAGEGKLGTDEAEFV 405
E A+ G + + L+ G D KA + L A E L + EAE
Sbjct: 119 EEAMHTIAGTAKNMGVLV-EGYDDVVKAKEEAKAAAKAAALAKAKEASLKSAEAELK 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0891 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,194,152
Number of extensions: 2735625
Number of successful extensions: 3984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3950
Number of HSP's successfully gapped: 62
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.0 bits)