Query psy12819
Match_columns 675
No_of_seqs 408 out of 2996
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:38:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 2E-55 4.3E-60 462.8 17.6 357 12-397 41-413 (449)
2 PTZ00206 amino acid transporte 100.0 9E-43 1.9E-47 384.9 10.3 333 17-395 59-426 (467)
3 KOG1303|consensus 100.0 2E-41 4.3E-46 363.7 10.6 346 14-397 34-400 (437)
4 PF01490 Aa_trans: Transmembra 100.0 6.8E-42 1.5E-46 375.0 3.5 348 16-398 1-374 (409)
5 PLN03074 auxin influx permease 100.0 8.2E-38 1.8E-42 343.8 11.4 336 14-397 42-402 (473)
6 KOG1304|consensus 100.0 2.7E-36 5.9E-41 318.1 9.6 236 418-674 32-292 (449)
7 KOG1305|consensus 100.0 1.4E-34 3E-39 309.5 9.6 341 14-398 2-375 (411)
8 KOG4303|consensus 100.0 4.3E-35 9.3E-40 289.8 -4.3 346 16-397 115-481 (524)
9 COG0814 SdaC Amino acid permea 99.9 1.2E-26 2.5E-31 251.9 9.5 350 12-397 3-382 (415)
10 PTZ00206 amino acid transporte 99.8 4.8E-21 1E-25 212.0 13.1 217 432-657 59-292 (467)
11 PRK10483 tryptophan permease; 99.8 2.3E-21 5.1E-26 207.1 9.6 337 12-397 5-372 (414)
12 PRK09664 tryptophan permease T 99.8 2E-21 4.2E-26 207.4 7.6 334 16-397 7-373 (415)
13 PLN03074 auxin influx permease 99.8 1.3E-20 2.8E-25 207.7 12.1 205 428-660 41-270 (473)
14 PF03222 Trp_Tyr_perm: Tryptop 99.8 9E-21 2E-25 204.6 8.0 334 16-397 1-364 (394)
15 PRK15132 tyrosine transporter 99.8 3.4E-20 7.4E-25 199.2 8.6 331 18-397 3-361 (403)
16 PF01490 Aa_trans: Transmembra 99.8 6.2E-20 1.4E-24 201.2 2.0 227 431-672 1-241 (409)
17 KOG1303|consensus 99.8 4.7E-18 1E-22 183.3 15.3 152 429-583 34-206 (437)
18 TIGR00837 araaP aromatic amino 99.7 1.9E-18 4E-23 187.7 4.4 325 24-397 3-358 (381)
19 KOG4303|consensus 99.6 1.3E-15 2.8E-20 152.1 4.0 162 430-596 114-294 (524)
20 KOG1305|consensus 99.6 1E-14 2.2E-19 156.9 10.0 207 430-654 3-225 (411)
21 PRK13629 threonine/serine tran 99.5 1.6E-14 3.4E-19 154.7 7.5 360 1-397 1-414 (443)
22 COG0814 SdaC Amino acid permea 99.4 2.7E-13 5.9E-18 147.6 9.5 221 430-673 6-242 (415)
23 TIGR00814 stp serine transport 99.3 1.4E-12 3.1E-17 140.8 8.2 341 19-398 4-379 (397)
24 KOG3832|consensus 98.7 6.2E-08 1.4E-12 90.9 9.6 219 17-237 11-298 (319)
25 TIGR00906 2A0303 cationic amin 98.5 5.1E-06 1.1E-10 94.6 17.8 220 11-259 23-266 (557)
26 PRK10655 potE putrescine trans 98.0 1.9E-05 4.2E-10 87.5 8.5 59 14-73 4-62 (438)
27 TIGR00909 2A0306 amino acid tr 97.9 3.5E-05 7.6E-10 85.2 10.1 214 15-259 2-230 (429)
28 TIGR00837 araaP aromatic amino 97.9 1.9E-05 4.2E-10 85.8 7.1 144 439-583 3-156 (381)
29 PRK09664 tryptophan permease T 97.9 9.1E-05 2E-09 80.1 12.0 72 431-502 7-79 (415)
30 PRK10483 tryptophan permease; 97.8 0.00027 5.9E-09 76.5 13.1 72 431-502 9-81 (414)
31 PRK15132 tyrosine transporter 97.7 0.0002 4.3E-09 77.7 11.5 57 434-490 4-60 (403)
32 PF03222 Trp_Tyr_perm: Tryptop 97.7 0.00022 4.8E-09 77.5 11.1 56 433-488 3-58 (394)
33 TIGR00912 2A0309 spore germina 97.7 6.2E-05 1.3E-09 81.1 6.1 208 17-259 2-213 (359)
34 TIGR01773 GABAperm gamma-amino 97.6 0.00028 6E-09 78.6 10.6 214 11-259 7-236 (452)
35 PRK10746 putative transport pr 97.5 0.00077 1.7E-08 75.2 11.8 212 13-259 7-235 (461)
36 TIGR00908 2A0305 ethanolamine 97.4 0.00036 7.8E-09 77.5 8.6 214 12-259 3-226 (442)
37 KOG1287|consensus 97.3 0.00014 3E-09 79.1 3.4 342 11-397 7-385 (479)
38 TIGR00913 2A0310 amino acid pe 97.3 0.0033 7.1E-08 70.6 14.0 211 16-259 2-232 (478)
39 PRK10435 cadB lysine/cadaverin 97.2 0.00078 1.7E-08 74.6 7.5 62 13-79 2-63 (435)
40 PRK11049 D-alanine/D-serine/gl 97.2 0.00083 1.8E-08 75.2 7.5 220 5-259 9-246 (469)
41 PRK10644 arginine:agmatin anti 97.1 0.0011 2.3E-08 73.7 8.1 61 12-73 4-64 (445)
42 PRK11021 putative transporter; 97.1 0.002 4.3E-08 70.9 9.9 208 19-259 2-212 (410)
43 TIGR00905 2A0302 transporter, 97.1 0.0013 2.9E-08 73.6 8.3 218 14-259 5-233 (473)
44 TIGR03810 arg_ornith_anti argi 97.1 0.00099 2.2E-08 74.5 7.1 59 16-74 1-60 (468)
45 PRK13629 threonine/serine tran 97.1 0.0038 8.2E-08 67.9 11.1 50 439-488 25-74 (443)
46 PF13520 AA_permease_2: Amino 97.0 0.0005 1.1E-08 75.9 3.3 202 19-237 2-213 (426)
47 PRK10238 aromatic amino acid t 96.9 0.0026 5.5E-08 71.0 8.4 212 13-259 9-235 (456)
48 TIGR00814 stp serine transport 96.9 0.0055 1.2E-07 66.6 10.5 146 437-588 7-169 (397)
49 COG1113 AnsP Gamma-aminobutyra 96.9 0.0036 7.9E-08 67.2 8.6 203 14-237 11-228 (462)
50 PF03845 Spore_permease: Spore 96.8 0.0021 4.5E-08 68.2 6.6 204 17-259 1-209 (320)
51 PRK11387 S-methylmethionine tr 96.7 0.0046 9.9E-08 69.3 8.1 85 6-95 4-89 (471)
52 PRK11357 frlA putative fructos 96.6 0.0061 1.3E-07 67.7 8.9 65 13-77 5-71 (445)
53 TIGR00930 2a30 K-Cl cotranspor 96.6 0.0075 1.6E-07 72.6 10.0 215 15-257 75-312 (953)
54 PRK10249 phenylalanine transpo 96.5 0.0062 1.3E-07 67.9 7.9 212 13-259 18-244 (458)
55 PRK10580 proY putative proline 96.5 0.0089 1.9E-07 66.7 8.9 93 12-120 5-98 (457)
56 PRK10836 lysine transporter; P 96.5 0.011 2.4E-07 66.5 9.8 65 12-76 11-76 (489)
57 TIGR00912 2A0309 spore germina 96.4 0.0068 1.5E-07 65.3 6.8 68 432-503 2-73 (359)
58 KOG3832|consensus 95.8 0.0094 2E-07 56.7 3.9 46 438-483 17-62 (319)
59 TIGR00911 2A0308 L-type amino 95.8 0.037 8.1E-07 62.5 9.4 65 12-76 38-104 (501)
60 PRK10655 potE putrescine trans 95.6 0.055 1.2E-06 60.0 9.9 48 430-478 5-52 (438)
61 PRK15049 L-asparagine permease 95.6 0.029 6.2E-07 63.3 7.5 76 14-95 26-102 (499)
62 COG3949 Uncharacterized membra 95.4 0.15 3.2E-06 52.8 11.0 135 21-178 6-143 (349)
63 PRK11049 D-alanine/D-serine/gl 95.2 0.088 1.9E-06 58.9 9.6 55 429-484 18-73 (469)
64 PRK11387 S-methylmethionine tr 95.1 0.12 2.5E-06 58.0 10.5 73 429-503 12-88 (471)
65 PRK10197 gamma-aminobutyrate t 94.8 0.057 1.2E-06 60.0 6.7 197 28-259 4-216 (446)
66 PRK10435 cadB lysine/cadaverin 94.7 0.096 2.1E-06 58.0 8.3 72 429-502 3-76 (435)
67 TIGR01773 GABAperm gamma-amino 94.4 0.14 3.1E-06 56.9 8.9 74 429-503 10-85 (452)
68 TIGR00835 agcS amino acid carr 94.2 0.98 2.1E-05 49.4 14.5 62 15-77 44-106 (425)
69 COG0531 PotE Amino acid transp 94.1 0.074 1.6E-06 59.2 5.9 218 13-259 9-236 (466)
70 KOG1286|consensus 94.0 0.21 4.6E-06 56.5 9.0 209 15-237 29-257 (554)
71 COG0833 LysP Amino acid transp 93.9 0.36 7.7E-06 53.5 10.1 205 14-237 42-259 (541)
72 PRK15049 L-asparagine permease 93.7 0.41 8.9E-06 54.0 10.9 73 430-503 27-101 (499)
73 PF02554 CstA: Carbon starvati 93.7 1.5 3.3E-05 46.5 13.9 182 17-237 51-236 (376)
74 PRK10836 lysine transporter; P 93.2 0.52 1.1E-05 53.1 10.7 72 429-500 13-86 (489)
75 TIGR00930 2a30 K-Cl cotranspor 93.0 0.27 5.8E-06 59.5 8.3 56 430-485 75-132 (953)
76 TIGR00907 2A0304 amino acid pe 93.0 0.87 1.9E-05 51.1 12.0 117 12-140 8-127 (482)
77 PRK10238 aromatic amino acid t 92.7 0.72 1.6E-05 51.4 10.7 74 429-503 10-85 (456)
78 PRK10644 arginine:agmatin anti 92.5 0.75 1.6E-05 51.1 10.6 35 429-463 6-40 (445)
79 PRK11021 putative transporter; 92.5 1.2 2.6E-05 48.8 12.0 67 434-503 2-72 (410)
80 PF03845 Spore_permease: Spore 92.4 1.7 3.6E-05 46.0 12.6 145 433-588 2-160 (320)
81 TIGR00911 2A0308 L-type amino 91.9 0.41 9E-06 54.0 7.7 36 428-463 39-75 (501)
82 PRK15238 inner membrane transp 91.5 0.95 2.1E-05 51.1 10.0 45 14-61 5-49 (496)
83 TIGR03428 ureacarb_perm permea 90.9 1 2.2E-05 50.6 9.3 61 12-73 9-71 (475)
84 TIGR00906 2A0303 cationic amin 90.8 3.2 7E-05 47.5 13.4 59 430-488 27-89 (557)
85 PRK10249 phenylalanine transpo 90.6 1.3 2.9E-05 49.3 10.0 73 430-503 20-94 (458)
86 PF00324 AA_permease: Amino ac 90.4 0.46 1E-05 53.3 6.1 63 28-95 7-70 (478)
87 PRK10580 proY putative proline 90.2 2.4 5.2E-05 47.2 11.6 74 429-503 7-82 (457)
88 TIGR00905 2A0302 transporter, 89.8 3.4 7.5E-05 46.2 12.5 58 430-487 6-67 (473)
89 TIGR00908 2A0305 ethanolamine 89.0 2.2 4.9E-05 47.2 10.2 73 429-503 5-80 (442)
90 TIGR00909 2A0306 amino acid tr 88.8 1.7 3.8E-05 47.8 9.1 48 431-479 3-51 (429)
91 TIGR00835 agcS amino acid carr 87.9 5.8 0.00013 43.5 12.0 53 432-486 46-103 (425)
92 TIGR03810 arg_ornith_anti argi 86.6 4.2 9.1E-05 45.4 10.6 31 432-462 2-33 (468)
93 COG0531 PotE Amino acid transp 85.3 1.9 4E-05 48.0 6.8 72 430-503 11-85 (466)
94 TIGR00913 2A0310 amino acid pe 85.0 3.8 8.1E-05 45.9 9.1 71 431-503 2-77 (478)
95 TIGR00800 ncs1 NCS1 nucleoside 84.2 8.9 0.00019 42.5 11.5 115 14-145 10-126 (442)
96 PRK11357 frlA putative fructos 83.9 6.2 0.00013 43.7 10.2 60 429-488 6-70 (445)
97 COG1966 CstA Carbon starvation 82.4 9.6 0.00021 42.5 10.4 187 17-236 51-241 (575)
98 KOG1287|consensus 81.2 1.4 3.1E-05 48.5 3.6 64 429-492 10-78 (479)
99 PF13520 AA_permease_2: Amino 80.2 6.4 0.00014 43.2 8.6 66 434-503 2-71 (426)
100 PRK10746 putative transport pr 78.6 15 0.00033 40.9 10.9 72 431-503 10-83 (461)
101 PRK15015 carbon starvation pro 78.4 15 0.00032 42.1 10.3 153 17-191 82-236 (701)
102 PRK10197 gamma-aminobutyrate t 77.6 13 0.00028 41.3 9.9 60 443-503 4-65 (446)
103 COG0833 LysP Amino acid transp 75.2 9 0.00019 42.8 7.5 134 437-572 50-195 (541)
104 PRK11017 codB cytosine permeas 71.8 24 0.00053 38.6 10.1 79 84-178 70-150 (404)
105 PF00474 SSF: Sodium:solute sy 71.6 43 0.00093 36.5 12.1 152 16-190 6-160 (406)
106 PRK09442 panF sodium/panthothe 71.4 49 0.0011 37.1 12.7 154 15-186 40-194 (483)
107 TIGR02358 thia_cytX probable h 69.5 23 0.0005 38.5 9.2 91 84-186 57-147 (386)
108 TIGR03813 put_Glu_GABA_T putat 66.1 73 0.0016 35.6 12.7 27 220-259 202-229 (474)
109 TIGR02119 panF sodium/pantothe 64.6 72 0.0016 35.6 12.2 155 15-187 39-194 (471)
110 COG0591 PutP Na+/proline sympo 63.5 94 0.002 35.0 12.8 147 16-181 38-186 (493)
111 TIGR00907 2A0304 amino acid pe 62.8 84 0.0018 35.1 12.4 71 432-503 13-87 (482)
112 PF05525 Branch_AA_trans: Bran 62.4 7.7 0.00017 42.5 3.7 57 106-167 272-328 (427)
113 KOG1286|consensus 61.3 18 0.00039 41.2 6.5 68 434-501 33-103 (554)
114 TIGR00796 livcs branched-chain 59.2 12 0.00026 40.4 4.5 76 87-178 257-332 (378)
115 KOG1289|consensus 58.8 53 0.0011 36.9 9.3 99 561-673 197-304 (550)
116 TIGR00910 2A0307_GadC glutamat 57.9 49 0.0011 37.4 9.3 32 215-259 197-229 (507)
117 PRK11375 allantoin permease; P 57.3 74 0.0016 35.8 10.6 49 84-142 88-137 (484)
118 TIGR00813 sss transporter, SSS 55.1 1.3E+02 0.0027 32.9 11.8 150 16-187 3-153 (407)
119 COG1114 BrnQ Branched-chain am 54.5 29 0.00062 37.6 6.2 67 106-178 274-340 (431)
120 PF01235 Na_Ala_symp: Sodium:a 51.9 1.6E+02 0.0035 32.3 11.6 56 11-67 12-68 (416)
121 PF02554 CstA: Carbon starvati 50.0 2.1E+02 0.0046 30.7 11.7 57 428-484 47-107 (376)
122 TIGR03428 ureacarb_perm permea 48.2 2.4E+02 0.0053 31.4 13.0 33 431-463 13-47 (475)
123 PRK12488 acetate permease; Pro 48.0 1.9E+02 0.0042 33.0 12.2 152 15-189 66-219 (549)
124 COG1115 AlsT Na+/alanine sympo 46.6 75 0.0016 34.9 7.9 57 429-486 59-119 (452)
125 PRK11375 allantoin permease; P 45.6 1.6E+02 0.0035 33.1 10.9 42 546-588 164-205 (484)
126 COG1457 CodB Purine-cytosine p 44.3 51 0.0011 36.3 6.4 73 103-181 89-163 (442)
127 PF00324 AA_permease: Amino ac 42.1 1.4E+02 0.003 33.3 9.8 61 443-503 7-69 (478)
128 COG1113 AnsP Gamma-aminobutyra 41.5 2.1E+02 0.0045 31.7 10.3 70 433-503 15-86 (462)
129 TIGR02121 Na_Pro_sym sodium/pr 40.6 3.9E+02 0.0086 29.9 13.1 155 15-184 35-190 (487)
130 TIGR02736 cbb3_Q_epsi cytochro 37.9 71 0.0015 24.0 4.2 35 467-503 6-40 (56)
131 PF11085 YqhR: Conserved membr 37.6 2E+02 0.0044 27.2 8.2 32 556-587 122-153 (173)
132 PF02133 Transp_cyt_pur: Perme 37.3 58 0.0012 36.0 5.7 114 14-144 5-120 (440)
133 PF01235 Na_Ala_symp: Sodium:a 37.2 4.7E+02 0.01 28.7 12.4 33 430-462 16-49 (416)
134 COG1966 CstA Carbon starvation 33.0 1.9E+02 0.004 32.7 8.4 46 429-474 48-93 (575)
135 TIGR03750 conj_TIGR03750 conju 32.7 2.3E+02 0.0051 24.8 7.4 54 432-485 17-71 (111)
136 PRK09395 actP acetate permease 32.3 4.2E+02 0.0091 30.3 11.8 148 15-185 68-217 (551)
137 PRK15419 proline:sodium sympor 31.7 5.8E+02 0.013 28.7 12.7 154 15-184 39-194 (502)
138 TIGR02711 symport_actP cation/ 31.2 4.6E+02 0.01 30.0 11.8 147 15-184 66-214 (549)
139 PRK15015 carbon starvation pro 30.3 2.2E+02 0.0048 33.0 8.6 42 431-472 81-122 (701)
140 TIGR03648 Na_symport_lg probab 29.5 5.2E+02 0.011 29.5 11.9 150 15-186 31-181 (552)
141 PF12270 Cyt_c_ox_IV: Cytochro 29.0 4.5E+02 0.0098 24.0 10.3 66 376-451 40-105 (137)
142 PF11990 DUF3487: Protein of u 27.1 2.9E+02 0.0063 24.6 7.2 58 431-489 19-77 (121)
143 TIGR00800 ncs1 NCS1 nucleoside 26.1 3.2E+02 0.007 30.1 9.2 54 521-574 112-173 (442)
144 PF02028 BCCT: BCCT family tra 25.3 5.6E+02 0.012 28.8 10.8 165 12-182 69-251 (485)
145 PRK15433 branched-chain amino 23.9 96 0.0021 34.2 4.3 67 104-177 274-340 (439)
146 COG1930 CbiN ABC-type cobalt t 23.8 1.2E+02 0.0027 25.3 3.8 35 419-453 47-81 (97)
147 COG1115 AlsT Na+/alanine sympo 23.4 1E+03 0.023 26.3 12.6 53 13-66 58-111 (452)
148 PF00474 SSF: Sodium:solute sy 22.9 2.9E+02 0.0062 30.0 8.0 153 431-589 6-169 (406)
149 TIGR01165 cbiN cobalt transpor 22.6 1.5E+02 0.0033 24.8 4.2 36 418-453 48-83 (91)
150 KOG2083|consensus 21.0 1.7E+02 0.0037 33.3 5.5 58 433-493 30-95 (643)
No 1
>KOG1304|consensus
Probab=100.00 E-value=2e-55 Score=462.78 Aligned_cols=357 Identities=31% Similarity=0.558 Sum_probs=331.5
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
.+.++..|..+|..|+.|.++|+|+|++|+||+++||+.|.+..++++.++.||++.|++|.+++++|.+.+..+|++.+
T Consensus 41 ~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~ 120 (449)
T KOG1304|consen 41 RDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETA 120 (449)
T ss_pred ccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
+.+++.|+.|.|.+|+++|.++++.+.+.|+|.|++|+++++++++++.+......++.+.|+.+..+++++++++|++|
T Consensus 121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999666667899999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819 172 SLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI 251 (675)
Q Consensus 172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~ 251 (675)
+|+++|+++++++++++.++++|..++.++.++.+.+.++++++.++|+.+|||++++++.|+|++ |
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~------------M- 267 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS------------M- 267 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhc------------c-
Confidence 999999999999999999999999999888888999888999999999999999999999999999 9
Q ss_pred cCCCCcccccceeEEeEEEEEee-------chhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee--E
Q psy12819 252 GNGRDHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS--V 316 (675)
Q Consensus 252 ~~p~~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~--~ 316 (675)
|+|++|...+++++.+|.+++++ ||++|||++++ |+|++ ++.+.+|+++++++++|||+ +|. +
T Consensus 268 k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~--~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI 345 (449)
T KOG1304|consen 268 KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE--ILSQTVKLLLAIAIFLTYPLQFYVPIEI 345 (449)
T ss_pred cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc--HHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence 99999998888999999877765 99999999999 99995 99999999999999999999 555 8
Q ss_pred EeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhheee
Q psy12819 317 YTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFYYIV 395 (675)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy~~~ 395 (675)
+|+.+.+|++.++ .++. +..+|+.+ ++++..+|..+||+++++++ |++++..+++++|.+++++.
T Consensus 346 i~~~i~~k~~~~~---~~~~---------~~~~R~~l--Vllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~ 411 (449)
T KOG1304|consen 346 IEPGIRKKFSENR---KKLL---------EYALRVFL--VLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELIT 411 (449)
T ss_pred HHHhHHHhcCcch---hHHH---------HHHHHHHH--HHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHH
Confidence 8888888877443 1221 35679884 88899999999999999999 99999999999999999987
Q ss_pred cc
Q psy12819 396 YK 397 (675)
Q Consensus 396 ~~ 397 (675)
+.
T Consensus 412 ~~ 413 (449)
T KOG1304|consen 412 FY 413 (449)
T ss_pred hc
Confidence 76
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=9e-43 Score=384.86 Aligned_cols=333 Identities=13% Similarity=0.140 Sum_probs=257.6
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA 96 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 96 (675)
+++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||+++|.+++++. +..+|+|++++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~------~~~sY~~la~~~~- 131 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT------NIRTYEGVARVLL- 131 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHh-
Confidence 356689999999999999999999999999999999999999999999999999987642 2469999999998
Q ss_pred cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCC-----ccHH-HHHHHHHHHHHHhhcccCc
Q psy12819 97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE-----LDIR-VYISAFLIPLILLSWVPNL 170 (675)
Q Consensus 97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~-----~~~~-~~~~i~~~~~~pl~~~~~l 170 (675)
||++++++++++.+.++|+|++|+++++|++++++......+ .+.| .+.+++.++++|++++|++
T Consensus 132 ---------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i 202 (467)
T PTZ00206 132 ---------GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHI 202 (467)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccch
Confidence 789999999999999999999999999999999886421111 1122 2334566778999999999
Q ss_pred cccchhhhHHHHHHHHHhheeEEEEc-ccCCC-CCC----------CCCCCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819 171 KSLAPVSMVANLLMGTGLGITFYYIV-WDLHK-PME----------MPQIADISTMPTFFSIVIFAIEAIGVVISFRTAT 238 (675)
Q Consensus 171 ~~L~~~S~~~~~~~~~~~~ii~~~~~-~~~~~-~~~----------~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~ 238 (675)
++|+++|.+++.++++..+.++++.. ++.|+ .++ .+.+....+.+.++|+++|||.||.+++++++|
T Consensus 203 ~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~- 281 (467)
T PTZ00206 203 DSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD- 281 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh-
Confidence 99999999999987766655554333 33322 111 112222345788999999999999999999999
Q ss_pred ccCCCchhhhhhhcCCC--CcccccceeEEeEEEEEee-------chhchhHHhhc----CC-CCCchhhHHHHHHHHHH
Q psy12819 239 LLSRPVISRELMIGNGR--DHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KG-PAWGRRYARFARICILL 304 (675)
Q Consensus 239 ~~~~~~~~~~~M~~~p~--~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nl-p~~~~~~~~~~~l~~~l 304 (675)
| |+|+ |+.+ ++..++.++.++ ||++||+++++ |+ |.+ |+...++++++.+
T Consensus 282 -----------M-~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-~~~~~v~~~~~~~ 345 (467)
T PTZ00206 282 -----------M-TNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-EPAIMVGFVGVLV 345 (467)
T ss_pred -----------h-cccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-CchhhHHHHHHHH
Confidence 9 7754 5554 555555443322 99999999988 88 555 6889999999999
Q ss_pred HHHhhhcc--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHH
Q psy12819 305 GLFLAYFG--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANL 381 (675)
Q Consensus 305 ~~~~s~Pl--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~ 381 (675)
.++++||+ +|+ ++.+++...++.++..++++ ...|.. +++++.++|+.+||++.++++ |++++.
T Consensus 346 ~v~~sypL~~~p~--r~~i~~~~~~~~~~~~~~~~---------~~~~~~--l~~~~l~iAi~vP~l~~vl~lvGa~~~~ 412 (467)
T PTZ00206 346 KLFVSYALLGMAC--RNALYDVIGWDARKVAFWKH---------CIAVVT--LSVVMLLCGLFIPKINTVLGFAGSISGG 412 (467)
T ss_pred HHHHhhhhhhhhH--HHHHHHHhCCCcccCchhhH---------HHHHHH--HHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence 99999999 888 44444433222211111111 222333 355678899999999999999 999999
Q ss_pred HHhhhhhhhhheee
Q psy12819 382 LMGTGLGITFYYIV 395 (675)
Q Consensus 382 ~l~filP~~fy~~~ 395 (675)
.++|++|++||++.
T Consensus 413 ~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 413 LLGFILPALLFMYS 426 (467)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999973
No 3
>KOG1303|consensus
Probab=100.00 E-value=2e-41 Score=363.72 Aligned_cols=346 Identities=20% Similarity=0.239 Sum_probs=278.1
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++++|++++.+|.++..+|.|+|+||||+++.||+.|+++++..++++.||.++|.+|.+..+.+..+...+|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 36679999999999999999999999999999999999999999999999999999999998776655556889999999
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT--ELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
+| |+++++++...+.+.++|+|+.|++..+|+++.+++..+.. .++.+.|+++++++.+|++++||++
T Consensus 114 af----------G~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 114 AF----------GPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred Hh----------CCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc
Confidence 99 55669999999999999999999999999999999987654 3567889999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhheeEEEEcccC-CC-CCCCCCC-CCCCch-hhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819 172 SLAPVSMVANLLMGTGLGITFYYIVWDL-HK-PMEMPQI-ADISTM-PTFFSIVIFAIEAIGVVISFRTATLLSRPVISR 247 (675)
Q Consensus 172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~-~~-~~~~~~~-~~~~~~-~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~ 247 (675)
.++++|..+.+.......+..+....+. .. .++.+.. .+.... ++++|+++|+|++|..+|+||++
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~t---------- 253 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHT---------- 253 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhh----------
Confidence 9999999998866543333333222222 11 1111111 111222 79999999999999999999999
Q ss_pred hhhhcCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--ee
Q psy12819 248 ELMIGNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TC 314 (675)
Q Consensus 248 ~~M~~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p 314 (675)
| |+|++|+| .+..++.+++. .||++|||++++ |+++ |.|+...+++++.++++.++++ .|
T Consensus 254 --M-k~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~-p~~~~~~ani~i~~h~i~s~~i~a~p 326 (437)
T KOG1303|consen 254 --M-KSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQP-PTWLIALANILIVLHLIGSYQIYAQP 326 (437)
T ss_pred --c-CCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccC-chhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9 99999988 55455444333 399999999999 6641 2589999999999999999999 78
Q ss_pred eEEeHHHhhhcCCCCcccc-chhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhh
Q psy12819 315 SVYTVIIAKNFSKSSKISI-RISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFY 392 (675)
Q Consensus 315 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy 392 (675)
. .+.+++..+.+.+.-. |. ...|...|+.. +..+.++|+.+|+|++++++ |+.....+.+++|+++|
T Consensus 327 l--~~~~E~~~~~~~~~~~~~~-------~~~R~~~Rt~~--v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~y 395 (437)
T KOG1303|consen 327 L--FDVVEKLIGVKHPDFKKRS-------LVLRLLVRTFF--VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMY 395 (437)
T ss_pred h--HHHHHHHhccCCccccccc-------cceeeehhhHH--HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4444443332222101 11 12356778874 88889999999999999999 99999999999999999
Q ss_pred eeecc
Q psy12819 393 YIVYK 397 (675)
Q Consensus 393 ~~~~~ 397 (675)
++.+|
T Consensus 396 l~~~k 400 (437)
T KOG1303|consen 396 LLIKK 400 (437)
T ss_pred HHhhh
Confidence 98743
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=6.8e-42 Score=375.02 Aligned_cols=348 Identities=22% Similarity=0.310 Sum_probs=282.2
Q ss_pred CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 95 (675)
||+|.+++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.|+.++.+ ++.+..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999988764 2234689999999888
Q ss_pred hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhcccCccccc
Q psy12819 96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT-ELDIRVYISAFLIPLILLSWVPNLKSLA 174 (675)
Q Consensus 96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~L~ 174 (675)
||++++++++++.+.++|.|++|+++++|.++++++...+. ..++..+.++..++++|++++|++++++
T Consensus 79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred ----------cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHH
Confidence 78889999999999999999999999999999999876542 4567777788888999999999999999
Q ss_pred hhhhHHHHHHHHHhheeEEEEcccC----CCCCCC--CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhh
Q psy12819 175 PVSMVANLLMGTGLGITFYYIVWDL----HKPMEM--PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRE 248 (675)
Q Consensus 175 ~~S~~~~~~~~~~~~ii~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~ 248 (675)
+.|.+|+++++..+.++.++..... .+.++. ....++.+++.++|+++|||.||+++|++++|
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----------- 217 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSE----------- 217 (409)
T ss_pred HHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeee-----------
Confidence 9999999987654233322222211 111111 22345678999999999999999999999999
Q ss_pred hhhcCCCCcccccceeEEeEEEEEee-------chhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee
Q psy12819 249 LMIGNGRDHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS 315 (675)
Q Consensus 249 ~M~~~p~~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~ 315 (675)
| |+|++++|..++...++.+++++ ||++||+++++ |+|++ +++..++++++.++++++||+ +|.
T Consensus 218 -m-~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~-~~~~~i~~~~~~i~~~~s~pl~~~p~ 294 (409)
T PF01490_consen 218 -M-KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND-DVLIIIARILLVISLLLSYPLQLFPA 294 (409)
T ss_pred -c-cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc-ccccccccccchhhhhhccccccchh
Confidence 9 99999886555777776654443 99999999988 88987 789999999999999999999 888
Q ss_pred --EEeHHHhhh---cCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhh
Q psy12819 316 --VYTVIIAKN---FSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGI 389 (675)
Q Consensus 316 --~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~ 389 (675)
.+++.+.++ .+++.+...+. ...+...|+. +++.++++|+.+||+++++++ |++++..++|++|+
T Consensus 295 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~ 365 (409)
T PF01490_consen 295 RNSLENLLFKRAASSRDSPKNTPSS-------RWLRYLIRII--LVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPA 365 (409)
T ss_pred Hhhhhhheecccccccccccccccc-------ceeeeeeecc--hhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHH
Confidence 455544432 00011111000 0124556776 477788999999999999999 99999999999999
Q ss_pred hhheeeccc
Q psy12819 390 TFYYIVYKV 398 (675)
Q Consensus 390 ~fy~~~~~~ 398 (675)
++|+|.++.
T Consensus 366 l~~~~~~~~ 374 (409)
T PF01490_consen 366 LLYLKLFKR 374 (409)
T ss_pred HHHHHhhcc
Confidence 999998873
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.2e-38 Score=343.76 Aligned_cols=336 Identities=11% Similarity=0.075 Sum_probs=259.4
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCC-------C
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSM-------S 86 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~-------s 86 (675)
.+++++..++.+|++|..+|.|+|+||+||+++||++|++++++.++++.||+++|.++.+++++|.+++.. +
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 466889999999999999999999999999999999999999999999999999999999888776544444 4
Q ss_pred HHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q psy12819 87 FADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW 166 (675)
Q Consensus 87 y~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~ 166 (675)
|.|+++..+ ||.++.+..+...+++++.|+.|++..++++..+- .+++.+.|++++.++.+|+++
T Consensus 122 ~~e~~~~~~----------G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----~~~~~~~~~~i~~~v~~~~~~ 186 (473)
T PLN03074 122 WFEVLDGLL----------GPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTVF 186 (473)
T ss_pred HHHHHHHhc----------ChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----CCcCCCeEEeehHHHHHHHHH
Confidence 456666555 78888899999999999999999998888777652 356888999999999999999
Q ss_pred ccCccccchhhhHHHHHHHHHhheeEEEEc-cc-CCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCc
Q psy12819 167 VPNLKSLAPVSMVANLLMGTGLGITFYYIV-WD-LHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPV 244 (675)
Q Consensus 167 ~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~ 244 (675)
+|++++++++|.+|+.+++++.+.+..... .+ .++.++. ...+...++.++++++|||++|+.+|++++|
T Consensus 187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~------- 258 (473)
T PLN03074 187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHA------- 258 (473)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHh-------
Confidence 999999999999998875543222221111 11 1222111 1123334566677799999999999999999
Q ss_pred hhhhhhhcCCCCcccccceeEEeEEEE-------EeechhchhHHhhc------CCCCCchhhHHHHHHHHHHHHHhhhc
Q psy12819 245 ISRELMIGNGRDHNVQCGHVLYRRTKV-------TSMSFADIGEVAFA------KGPAWGRRYARFARICILLGLFLAYF 311 (675)
Q Consensus 245 ~~~~~M~~~p~~~~~~~~v~~~~~~iv-------~~lGY~~fG~~~~~------nlp~~~~~~~~~~~l~~~l~~~~s~P 311 (675)
| |+|++|++ +...++..+ .+.||++|||++++ |+|++ .+..++++++.++++.+||
T Consensus 259 -----M-~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~--~~~~~~~~~~~i~~~~sy~ 327 (473)
T PLN03074 259 -----M-WKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS--GWRDAAVILMLIHQFITFG 327 (473)
T ss_pred -----c-cChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--hHHHHHHHHHHHHHHHHHH
Confidence 9 99999997 333222221 23399999998764 58865 5689999999999999999
Q ss_pred c--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhh
Q psy12819 312 G--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLG 388 (675)
Q Consensus 312 l--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP 388 (675)
+ +|. .+..++..+.+.+ +.. ..+..+|+. ++++++++|+.+|+|++++++ |++++..+++++|
T Consensus 328 l~~~p~--~~~~e~~~~~~~~-k~~---------~~r~~~R~~--lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P 393 (473)
T PLN03074 328 FACTPL--YFVWEKAIGVHDT-KSI---------CLRALARLP--VVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIP 393 (473)
T ss_pred HHHhhH--HHHHHHHhccccc-ccH---------HHHHHHHHH--HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9 777 2223332222111 111 123567887 488889999999999999999 9999999999999
Q ss_pred hhhheeecc
Q psy12819 389 ITFYYIVYK 397 (675)
Q Consensus 389 ~~fy~~~~~ 397 (675)
+++|++.++
T Consensus 394 ~l~~l~~~~ 402 (473)
T PLN03074 394 SLAHMLTYR 402 (473)
T ss_pred HHHHHHHhc
Confidence 999998654
No 6
>KOG1304|consensus
Probab=100.00 E-value=2.7e-36 Score=318.10 Aligned_cols=236 Identities=29% Similarity=0.509 Sum_probs=192.7
Q ss_pred CCCCCccccccCCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccC---CCCch
Q psy12819 418 KDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNT---DPLAE 494 (675)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~---~~~~~ 494 (675)
+.++++.+.++.++++|..+|..|++|+.+|+|+|+||+|||++||+.|.+..++++.+|+||+|+|+++.+ +...+
T Consensus 32 d~~~~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~ 111 (449)
T KOG1304|consen 32 DGDYSPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG 111 (449)
T ss_pred CCCCCccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344566667777788999999999999999999999999999999999999999999999999999975222 12222
Q ss_pred hHhhHHHHHHHh-------hhhhccceee---------------eehHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHH
Q psy12819 495 SFTRYRNSIHAL-------CVRFDLYSRF---------------ELSSKISIRISQVINHYTGTELDIRVYISAFLIPLI 552 (675)
Q Consensus 495 ~~~~~~~~~~~~-------~~~~g~~~~~---------------~~~i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~ 552 (675)
.+-||++.++.. ++..|.++++ .+.+|+++|++++.+.....+++.++|++++.++++
T Consensus 112 ~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~l 191 (449)
T KOG1304|consen 112 PSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLL 191 (449)
T ss_pred ccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 335666555422 2333333222 123789999999999766678899999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhh
Q psy12819 553 LLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTH 632 (675)
Q Consensus 553 pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~ 632 (675)
|++++||||+|+++|++||+++++|+.++++|.+++.. +.++++. +. .|+ +.|+|+|+++|+
T Consensus 192 ll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~-~~--------~~~-------~~~lf~Gtaifa 253 (449)
T KOG1304|consen 192 LLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPA-VT--------GWS-------GLPLFFGTAIFA 253 (449)
T ss_pred HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--Ccccccc-cc--------chh-------hhHHHHHHHHHH
Confidence 99999999999999999999999999999999998865 2222221 11 122 578999999999
Q ss_pred hhcccccccccccchhhhccCcccchHHHHHHHHHHhhhccc
Q psy12819 633 LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYI 674 (675)
Q Consensus 633 ~~~~~~g~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (675)
||| +|+ ++|+|++||+|++|.|.+|+++.||..+.++|+
T Consensus 254 fEG--ig~-VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~ 292 (449)
T KOG1304|consen 254 FEG--IGM-VLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYI 292 (449)
T ss_pred hcc--ceE-EEehhhcccChhhcCCccchHHHHHHHHHHHHH
Confidence 999 999 999999999999999999999999999999886
No 7
>KOG1305|consensus
Probab=100.00 E-value=1.4e-34 Score=309.46 Aligned_cols=341 Identities=17% Similarity=0.214 Sum_probs=257.3
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++++|..++++|+.|+++|+|+|++|+||++.|++.|++++.++|.++.++.+++.+|+++.. .++|+++++.
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~------~~ty~~l~~~ 75 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG------ERTYSSLGDL 75 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC------CCCHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988653 2499999999
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCc------cHHH-HHHHHHHHHHHhhc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTEL------DIRV-YISAFLIPLILLSW 166 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~------~~~~-~~~i~~~~~~pl~~ 166 (675)
++ |+.++....+.......| |++|+++++|.++.........+. +++. +++..+.++.|+++
T Consensus 76 ~~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl 144 (411)
T KOG1305|consen 76 IF----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSL 144 (411)
T ss_pred Hc----------CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHH
Confidence 98 566666666666666666 799999999999977665432221 2222 45667889999999
Q ss_pred ccCccccchhhhHHHHHHHHHhheeEEEEcccC---CCCC-CCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819 167 VPNLKSLAPVSMVANLLMGTGLGITFYYIVWDL---HKPM-EMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR 242 (675)
Q Consensus 167 ~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~ 242 (675)
.|++++|++.|.++.++......++.++..... ++.. +.+....+++...++|+++|||.||.|+.++++|
T Consensus 145 ~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E----- 219 (411)
T KOG1305|consen 145 LKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE----- 219 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeee-----
Confidence 999999999999999998876666665554422 1111 1111122257999999999999999999999999
Q ss_pred CchhhhhhhcCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCch-----hhHHHHHHHHHHHH
Q psy12819 243 PVISRELMIGNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGR-----RYARFARICILLGL 306 (675)
Q Consensus 243 ~~~~~~~M~~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~-----~~~~~~~l~~~l~~ 306 (675)
| |||++.+. .++...+....++ .||+.|||++++ |+|++.+ +....+|..+++++
T Consensus 220 -------l-~~~s~~~i-~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~ 290 (411)
T KOG1305|consen 220 -------L-KDRSVKKI-QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAV 290 (411)
T ss_pred -------e-eCchHHHH-HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHH
Confidence 9 88877442 1133222221111 299999999999 5554411 23589999999999
Q ss_pred Hhhhcc--eee--EEeHHHhhhcCCC-CccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHH
Q psy12819 307 FLAYFG--TCS--VYTVIIAKNFSKS-SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVAN 380 (675)
Q Consensus 307 ~~s~Pl--~p~--~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~ 380 (675)
++++|+ +|+ .+.+.+.++.+++ +..+.|. +-+.+.++...++.|+.+|++++++++ |++++
T Consensus 291 ~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~-------------~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~ 357 (411)
T KOG1305|consen 291 LLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRH-------------FVITLLLLIFTFLLAIFVPSIGTIFGFVGATSS 357 (411)
T ss_pred HHHHHHHhchHHHHHHHHhcccCCCCCCccceeh-------------hHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhh
Confidence 999999 999 3333333222211 1111111 112234677789999999999999999 99999
Q ss_pred HHHhhhhhhhhheeeccc
Q psy12819 381 LLMGTGLGITFYYIVYKV 398 (675)
Q Consensus 381 ~~l~filP~~fy~~~~~~ 398 (675)
..++|++|+.+|+|..|.
T Consensus 358 ~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 358 TSISFILPALYYLKASKK 375 (411)
T ss_pred hhhHHHHHHHhhheeecc
Confidence 999999999999998883
No 8
>KOG4303|consensus
Probab=99.98 E-value=4.3e-35 Score=289.85 Aligned_cols=346 Identities=15% Similarity=0.206 Sum_probs=279.8
Q ss_pred CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCCCCHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRT--KVTSMSFADIGEV 93 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~--~~~~~sy~~l~~~ 93 (675)
.+.+.+++..|..|++-|.=+++||+|....||+ ++..++.+|.+|.||..+|++|..+-++.- -+..+||.++|..
T Consensus 115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 4678999999999999999999999999999997 999999999999999999999997654210 0124799999999
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
++ +| ..|.+.+.+.+.+.+..+|+.|++..+|.++..++. ...+.+.|+.+..+.++|.+++|+++..
T Consensus 194 C~--~P-------~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~---~svd~~sWm~i~~a~LLpc~FLk~Lk~V 261 (524)
T KOG4303|consen 194 CY--KP-------GLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG---LSVDKASWMMITSASLLPCSFLKDLKIV 261 (524)
T ss_pred hc--CC-------CcchheeeHHHHHHHHHHHHhhhheechhhhccCCC---CCccccchhhhhhHHHhhhHHHHHHHHH
Confidence 97 33 234567889999999999999999999999888764 3578999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhheeEEEEcccCCCC--CCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819 174 APVSMVANLLMGTGLGITFYYIVWDLHKP--MEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI 251 (675)
Q Consensus 174 ~~~S~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~ 251 (675)
+.+|++..++-++.-++++.|+.....++ +..+...|...+|..+|+++|+|..|...|.++.+ |
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN------------M- 328 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN------------M- 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc------------c-
Confidence 99999999988877777777776554443 34444457788999999999999999999999999 9
Q ss_pred cCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee--E
Q psy12819 252 GNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS--V 316 (675)
Q Consensus 252 ~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~--~ 316 (675)
++|.+|+. .+.|+-+...+ +||++|||.||+ |+|+. -+...+++++.+-.++|||+ +.+ .
T Consensus 329 ~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q--sfk~~VN~fLV~KALLSYPLPfyAAvel 403 (524)
T KOG4303|consen 329 KNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ--SFKILVNLFLVVKALLSYPLPFYAAVEL 403 (524)
T ss_pred CChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc--chhhhhhHHHHHHHHHcCCchHHHHHHH
Confidence 99999997 66665443332 299999999998 99985 68899999999999999999 555 5
Q ss_pred EeHHHhhhcCCCCcccc-chhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhhee
Q psy12819 317 YTVIIAKNFSKSSKISI-RISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFYYI 394 (675)
Q Consensus 317 l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy~~ 394 (675)
+++.+....++.+..+- ......++| .+-+|+. +++.+.++|+++|+|..++++ |++.+..++|+.|++||++
T Consensus 404 Le~nlF~g~p~t~Fpscys~Dg~Lk~W---gltlR~~--lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ 478 (524)
T KOG4303|consen 404 LENNLFLGYPQTPFPSCYSPDGSLKEW---GLTLRII--LVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLY 478 (524)
T ss_pred HHHhhhcCCCCCCCceeeCCCcchhhh---eeeeeeH--HHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence 66665543332221110 000111222 3556776 488899999999999999998 8888889999999999999
Q ss_pred ecc
Q psy12819 395 VYK 397 (675)
Q Consensus 395 ~~~ 397 (675)
++.
T Consensus 479 ik~ 481 (524)
T KOG4303|consen 479 IKE 481 (524)
T ss_pred HHH
Confidence 886
No 9
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=251.94 Aligned_cols=350 Identities=17% Similarity=0.140 Sum_probs=251.2
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
+..+++.+..++++++.+|++|+|+|++|++++..|++++++++++.+.+++++.+++.|+.++.+++ ..+|.+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~ 78 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLV 78 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999876432 24999999
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCC-ccHHHHHHHHHHHHHHhhcccCc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE-LDIRVYISAFLIPLILLSWVPNL 170 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~-~~~~~~~~i~~~~~~pl~~~~~l 170 (675)
++.+ ||++++++++.+.+.+|+.+++|.+..+|.+++.+++....+ .+++.+.+++..++.++++.++.
T Consensus 79 ~~~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~ 148 (415)
T COG0814 79 EDYL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTL 148 (415)
T ss_pred HHHh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchh
Confidence 9998 788999999999999999999999999999999999865544 67888888889999999999999
Q ss_pred cccchhhhHHHHHHHHHhheeEEEEcccCCC-CCCCCC--CCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819 171 KSLAPVSMVANLLMGTGLGITFYYIVWDLHK-PMEMPQ--IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR 247 (675)
Q Consensus 171 ~~L~~~S~~~~~~~~~~~~ii~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~ 247 (675)
..++..|.+....+....+...+......++ ....+. ..++..+..++|+++|||+||++++++++|
T Consensus 149 ~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~---------- 218 (415)
T COG0814 149 AVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNY---------- 218 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHH----------
Confidence 9999999999887665554444433221111 111111 235667899999999999999999999999
Q ss_pred hhhhcCCCC--cccccceeEEeEEE---EEee----chhchhHHhhc----CCCCC------------chhhHHHHHHHH
Q psy12819 248 ELMIGNGRD--HNVQCGHVLYRRTK---VTSM----SFADIGEVAFA----KGPAW------------GRRYARFARICI 302 (675)
Q Consensus 248 ~~M~~~p~~--~~~~~~v~~~~~~i---v~~l----GY~~fG~~~~~----nlp~~------------~~~~~~~~~l~~ 302 (675)
| |++++ .+| ....+..+ +++. +|..+|+++.+ |.+++ .+......+++-
T Consensus 219 --~-~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 292 (415)
T COG0814 219 --M-RKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFA 292 (415)
T ss_pred --h-ccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9 55544 555 33322221 1111 89999988776 44433 033555666666
Q ss_pred HHHHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHH
Q psy12819 303 LLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANL 381 (675)
Q Consensus 303 ~l~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~ 381 (675)
.+++..||--++.-+.+.+.+.+++++.+..|.+.. .....+..+..++.+..++...|+.+.+++. |+....
T Consensus 293 ~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~ 366 (415)
T COG0814 293 LFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTG------LLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIP 366 (415)
T ss_pred HHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhh------hhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666543344423444444443322111121110 0112233334566778888999988877764 666666
Q ss_pred HHhhhhhhhhheeecc
Q psy12819 382 LMGTGLGITFYYIVYK 397 (675)
Q Consensus 382 ~l~filP~~fy~~~~~ 397 (675)
.+.++.|..+++|...
T Consensus 367 ~ll~~~p~~~~~~~~~ 382 (415)
T COG0814 367 ALLFIKPRKLIYKLPA 382 (415)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 7777777666655444
No 10
>PTZ00206 amino acid transporter; Provisional
Probab=99.85 E-value=4.8e-21 Score=212.02 Aligned_cols=217 Identities=13% Similarity=0.093 Sum_probs=145.7
Q ss_pred CCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhh-hhh
Q psy12819 432 PVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALC-VRF 510 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~-~~~ 510 (675)
+.+..++++|++|+.+|+|+|+||+||+++||++|++++++++.++.||+++|.+++++++.++|+|.++.+.+-. +..
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~ 138 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY 138 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999988777776677777766653110 000
Q ss_pred -------ccceeee-ehHHHHHHHHHHHhhhcC-----CCC-cchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy12819 511 -------DLYSRFE-LSSKISIRISQVINHYTG-----TEL-DIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 576 (675)
Q Consensus 511 -------g~~~~~~-~~i~~~~~l~~~~~~~~~-----~~~-~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~ 576 (675)
..++.+. +.++++|++++++..... ... ++..+..+..++++|++++||+++|+|+|.+|++++++
T Consensus 139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~ 218 (467)
T PTZ00206 139 VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVY 218 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHH
Confidence 0111111 226799999888753211 111 22233344566779999999999999999999999998
Q ss_pred HHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhc--cCc
Q psy12819 577 GLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRN--AGL 654 (675)
Q Consensus 577 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~--~~~ 654 (675)
.++.++++.+.+.. + ++.+ .++.. ..+..++..|. ..-+.+..++..+|+|++ -.. ++++++.||| |++
T Consensus 219 ~vi~ivi~~~~~~~--~-~~~~-~~~~~-~~~~~~~~~f~-~~~~~~~algi~~faF~~--h~~-~~~i~~~M~~~t~~~ 289 (467)
T PTZ00206 219 LVIVIVVHSCMNGL--P-ENIK-NVSVG-KDDNAEIILFN-SGNRAIEGLGVFIFAYVF--QIT-AYEVYMDMTNRSVGK 289 (467)
T ss_pred HHhhhhhhhhcccC--c-cccc-ccccC-CCCCCceEEec-CchHHHhhhhHHHhhhhh--hhh-hHHHHHhhcccchhH
Confidence 88877766543211 0 0111 01100 00111121220 001234567889999988 777 8899999988 455
Q ss_pred ccc
Q psy12819 655 TGG 657 (675)
Q Consensus 655 ~~~ 657 (675)
+..
T Consensus 290 ~~~ 292 (467)
T PTZ00206 290 FVL 292 (467)
T ss_pred HHH
Confidence 554
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.84 E-value=2.3e-21 Score=207.11 Aligned_cols=337 Identities=9% Similarity=0.063 Sum_probs=235.0
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
..++++.+..++++-+..|+||+|+|+||.+.++.|+.++++++++++..+.||..++.|+..+.+ +..++..++
T Consensus 5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma 79 (414)
T PRK10483 5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTIT 79 (414)
T ss_pred ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999987653 247999999
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
|+.+ ||.++.+.+++..+..|+.+++|+.-.+|.+++.+++ .+.+.+.+.-.+++.++.-...+.. .+
T Consensus 80 ~~~L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~~i~~~~~~llF~~~~~~iv~~g-t~ 147 (414)
T PRK10483 80 KDLL----------GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSLNVPARAAGFGFALLVAFVVWLS-TK 147 (414)
T ss_pred HHHc----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHhh-hh
Confidence 9998 7889999999999999999999999999999999987 3445566665566666665555543 24
Q ss_pred ccchhhhHHHHHHHHHhheeEEEEcccCC--CCCCC--CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819 172 SLAPVSMVANLLMGTGLGITFYYIVWDLH--KPMEM--PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR 247 (675)
Q Consensus 172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~ 247 (675)
...+.+.+=....+..++..+.....+.. ...+. ....++...+.++|++++||+.|+++|++.+.
T Consensus 148 ~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y---------- 217 (414)
T PRK10483 148 AVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY---------- 217 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHH----------
Confidence 44444433333232222222111111111 00011 11112345789999999999999999999888
Q ss_pred hhhhcCCCCcccccceeEEeEEEEEeechhchhHHhh--------------c-CC----------CCCchhhHHHHHHHH
Q psy12819 248 ELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAF--------------A-KG----------PAWGRRYARFARICI 302 (675)
Q Consensus 248 ~~M~~~p~~~~~~~~v~~~~~~iv~~lGY~~fG~~~~--------------~-nl----------p~~~~~~~~~~~l~~ 302 (675)
+++|++|.+| ++..+..+..++ |+.|--.+. + |+ .++ ........++.
T Consensus 218 --~~~d~~kir~---~I~iGs~Iplv~-yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~-~~i~~~~~~Fa 290 (414)
T PRK10483 218 --YGKDPKTIVK---CLVYGTLMALAL-YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNS-RSLDLLLVVFS 290 (414)
T ss_pred --hCcCHHHHHH---HHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCC-hHHHHHHHHHH
Confidence 7556676666 444433322221 222211111 1 22 122 35557778888
Q ss_pred HHHHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHH
Q psy12819 303 LLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVAN 380 (675)
Q Consensus 303 ~l~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~ 380 (675)
.+++.+||--+..-+.|.+.|.++.+++...|.+ +.++++++|.++|...|+ |=..+++ |.. +
T Consensus 291 ~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~~~r~~--------------~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~ 355 (414)
T PRK10483 291 NFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFK--------------TALLTFLPPVVGGLLFPNGFLYAIGYAGLA-A 355 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccee--------------eehhhHhhHHHHHHHhHHHHHHHHHHHHHH-H
Confidence 8899888855322447778887776654334432 223469999999999999 7777788 655 5
Q ss_pred HHHhhhhhhhhheeecc
Q psy12819 381 LLMGTGLGITFYYIVYK 397 (675)
Q Consensus 381 ~~l~filP~~fy~~~~~ 397 (675)
..+.-++|+..-+|.||
T Consensus 356 ~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 356 TIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57778999999999886
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.84 E-value=2e-21 Score=207.44 Aligned_cols=334 Identities=11% Similarity=0.062 Sum_probs=229.4
Q ss_pred CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 95 (675)
+|.+...+++-+..|+||+|+|+||.+-++.|+.++++++++++..+.||..++.|+..+++ +..++..++|+.+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHc
Confidence 44588889999999999999999999999999999999999999999999999999987653 3479999999998
Q ss_pred hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccch
Q psy12819 96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP 175 (675)
Q Consensus 96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~ 175 (675)
||.++.+.++...+..|+.+++|+.-.++.+++.++...+.+.+.+...+++.++.-+..+..+ +...+
T Consensus 82 ----------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~ 150 (415)
T PRK09664 82 ----------GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASR 150 (415)
T ss_pred ----------ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHH
Confidence 7889999999999999999999999999999999986444455666555556665555555442 44444
Q ss_pred hhhHHHHHHHHHhheeEEEEcccC--CCCCCCCCCCC----CCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhh
Q psy12819 176 VSMVANLLMGTGLGITFYYIVWDL--HKPMEMPQIAD----ISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISREL 249 (675)
Q Consensus 176 ~S~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~ 249 (675)
.+.+=....+.+++..+.....+. +...+.+...+ +..+..++|++++||+.|+++|++.+.
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y------------ 218 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC------------ 218 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHH------------
Confidence 433222222222222111111111 00111111111 224778999999999999999999998
Q ss_pred hhcCCCCcccccceeEEeEEEEEeechhchhHHhhc---------------CCC----------CCchhhHHHHHHHHHH
Q psy12819 250 MIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFA---------------KGP----------AWGRRYARFARICILL 304 (675)
Q Consensus 250 M~~~p~~~~~~~~v~~~~~~iv~~lGY~~fG~~~~~---------------nlp----------~~~~~~~~~~~l~~~l 304 (675)
+++|++|.+| .+..+..+..+ .|..+-..+.+ |++ ++ .+......++..+
T Consensus 219 ~~~d~~~~~k---aIl~Gs~IpLv-iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~-~~i~~~~~~Fa~~ 293 (415)
T PRK09664 219 YGKRKDKLIK---SVVFGSLLALV-IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQH-GIIEFCLLVFSNL 293 (415)
T ss_pred hCccHHHHHH---HHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccC-hHHHHHHHHHHHH
Confidence 7456666665 22222211111 23222111111 221 22 4566677788888
Q ss_pred HHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHHHH
Q psy12819 305 GLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVANLL 382 (675)
Q Consensus 305 ~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~~~ 382 (675)
++.+||--+...+.|.+.|.++.+++...|.+ +.++++++|++++...|+ |=..+++ |.. +.+
T Consensus 294 Ai~TSFlGv~LGL~D~l~D~~~~~~~~~~r~~--------------~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i 358 (415)
T PRK09664 294 AVASSFFGVTLGLFDYLADLFKIDNSHGGRFK--------------TVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI 358 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccee--------------eehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence 88888855333447778887766654444432 223469999999999999 7777888 664 668
Q ss_pred Hhhhhhhhhheeecc
Q psy12819 383 MGTGLGITFYYIVYK 397 (675)
Q Consensus 383 l~filP~~fy~~~~~ 397 (675)
+.-++|++.-||.||
T Consensus 359 l~~ilP~lM~~~~Rk 373 (415)
T PRK09664 359 WAVIIPAVLAIKARK 373 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888999999999886
No 13
>PLN03074 auxin influx permease; Provisional
Probab=99.83 E-value=1.3e-20 Score=207.72 Aligned_cols=205 Identities=13% Similarity=0.115 Sum_probs=141.9
Q ss_pred cCCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-----ccCCCC-----chhHh
Q psy12819 428 KLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-----RNTDPL-----AESFT 497 (675)
Q Consensus 428 ~~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-----~~~~~~-----~~~~~ 497 (675)
...+++|..+|.+|++|..+|+|||+||+||+++||++|++++++++++++||.++|.+ |.|++. .+...
T Consensus 41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 34567899999999999999999999999999999999999999999999999999864 222222 22335
Q ss_pred hHHHHHHHhhhhhccce----eeeeh--------HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhH
Q psy12819 498 RYRNSIHALCVRFDLYS----RFELS--------SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP 565 (675)
Q Consensus 498 ~~~~~~~~~~~~~g~~~----~~~~~--------i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~ 565 (675)
+|.|.+....++.+... .+... +..++++.++ +..++.+.|+++..++.+|++++|++++++|
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-----~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~ 195 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-----CCCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence 67777654422211111 11111 1233443333 2456788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccc---hhhhhhhhcccccccc
Q psy12819 566 VSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTD---GETLTHLLKASLGTGI 642 (675)
Q Consensus 566 ~S~~a~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~---~~~~~~~~~~~~g~~~ 642 (675)
+|.++..++++..++++.....+- .++.++ ++ ... +.+.++ +..+|+++| .|+ .
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~-------~~~~~~-----~~-~~~-------~~~~~f~~~~~i~faf~g--~~v-~ 252 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHG-------QVEGVK-----HS-GPT-------KLVLYFTGATNILYTFGG--HAV-T 252 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------CCCCCC-----CC-Cch-------hHHHHHHHHHHHHHHhcc--ccc-H
Confidence 999999987765554443222211 111111 00 000 133344 347999999 999 9
Q ss_pred cccchhhhccCcccchHH
Q psy12819 643 LSMPYAFRNAGLTGGIFL 660 (675)
Q Consensus 643 ~~~~~~m~~~~~~~~~~~ 660 (675)
++++++||||++|.+...
T Consensus 253 ~~I~~~M~~P~~F~~~~~ 270 (473)
T PLN03074 253 VEIMHAMWKPQKFKYIYL 270 (473)
T ss_pred HHHHHhccChhcccchHH
Confidence 999999999999997643
No 14
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=9e-21 Score=204.62 Aligned_cols=334 Identities=15% Similarity=0.168 Sum_probs=233.1
Q ss_pred CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 95 (675)
++.+.+++++.+..+++|+|+|+||.+.+..|++++++.+++++.++++|..++.|...+.. +..+|.+++++.+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~l 75 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYL 75 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999887543 2589999999998
Q ss_pred hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccch
Q psy12819 96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP 175 (675)
Q Consensus 96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~ 175 (675)
||++++++.+...+..|+.+++|..-.++.+++.++...+.+.+.+...+++.++...+.+.. .+...+
T Consensus 76 ----------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~ 144 (394)
T PF03222_consen 76 ----------GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG-TKAVDR 144 (394)
T ss_pred ----------ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 789999999999999999999999999999999999876555666665555444443333332 223344
Q ss_pred hhhHHHHHHHHHhheeEEEEccc--CCCCCC-CCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819 176 VSMVANLLMGTGLGITFYYIVWD--LHKPME-MPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIG 252 (675)
Q Consensus 176 ~S~~~~~~~~~~~~ii~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~ 252 (675)
.+.+-+...+..+.....+...+ .+...+ .+...++...+.++|++++||+.|+.+|++.+. +++
T Consensus 145 ~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~------------~~~ 212 (394)
T PF03222_consen 145 INRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKY------------LGG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHH------------hCc
Confidence 43333332332222222111111 111111 112346778899999999999999999999988 755
Q ss_pred CCCCcccccceeEEeEEEEEeechhc-----hh--------------HHhhc------CCCCCchhhHHHHHHHHHHHHH
Q psy12819 253 NGRDHNVQCGHVLYRRTKVTSMSFAD-----IG--------------EVAFA------KGPAWGRRYARFARICILLGLF 307 (675)
Q Consensus 253 ~p~~~~~~~~v~~~~~~iv~~lGY~~-----fG--------------~~~~~------nlp~~~~~~~~~~~l~~~l~~~ 307 (675)
|++|.+| .+.++..+..++ |.. .| ++..+ +..++ .+......++-.+++.
T Consensus 213 d~~k~~~---ai~~Gs~i~lv~-yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~fa~~Ai~ 287 (394)
T PF03222_consen 213 DPKKIRK---AIIIGSLIPLVM-YLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGS-PWISILGSIFAFFAIA 287 (394)
T ss_pred cHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCC-cHHHHHHHHHHHHHHH
Confidence 7777776 333332221111 111 12 01111 22233 4667778899999999
Q ss_pred hhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHHHHHhh
Q psy12819 308 LAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVANLLMGT 385 (675)
Q Consensus 308 ~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~~~l~f 385 (675)
+||--+...+.|.+.|.++.+++...|.+ .....+++++++|...|+ |-..+++ | .+...+..
T Consensus 288 TSFlGv~lgl~d~l~d~~k~~~~~~~r~~--------------~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ 352 (394)
T PF03222_consen 288 TSFLGVYLGLFDFLADLFKLKNNSSGRLK--------------TWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLG 352 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccchHH--------------HHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHH
Confidence 99854222447777777765443333322 333468889999999998 6677788 7 78889999
Q ss_pred hhhhhhheeecc
Q psy12819 386 GLGITFYYIVYK 397 (675)
Q Consensus 386 ilP~~fy~~~~~ 397 (675)
++|++..||.|+
T Consensus 353 ilP~~m~~~~r~ 364 (394)
T PF03222_consen 353 ILPALMVWKARK 364 (394)
T ss_pred HHHHHHHHHHHc
Confidence 999999999776
No 15
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.81 E-value=3.4e-20 Score=199.16 Aligned_cols=331 Identities=13% Similarity=0.123 Sum_probs=223.4
Q ss_pred CChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819 18 GKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK 97 (675)
Q Consensus 18 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 97 (675)
.+..++++.+..|++|+|+|+||.+.+..|++++++++++++.++.|+++++.|+..+. ++..++.+++++.+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-----~~~~~~~~~a~~~L-- 75 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-----PADTGLGTLAKRYL-- 75 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCHHHHHHHHh--
Confidence 37889999999999999999999999999999999999999999999999999965432 23478999999998
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819 98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS 177 (675)
Q Consensus 98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S 177 (675)
||+++++..+...+..|..+++|..-.++.+.+.++++.+.+.+.+...+++.++.....+.. .+...+.+
T Consensus 76 --------G~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n 146 (403)
T PRK15132 76 --------GRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG-TSSVDLFN 146 (403)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 788999999999999999999999999999999998765545555544444444433333332 23333333
Q ss_pred hHHHHHHHHHhheeEEEEcccC--CCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCC
Q psy12819 178 MVANLLMGTGLGITFYYIVWDL--HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGR 255 (675)
Q Consensus 178 ~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~ 255 (675)
-+=+...+..++....+...+. ....+.++ +.+.++..+|++.+||+.|+++|++.+. ++++++
T Consensus 147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y------------~~~~~~ 212 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSY------------MGGNIR 212 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHH------------hCcCHH
Confidence 3322222222222111111111 11111111 1224889999999999999999999998 745667
Q ss_pred CcccccceeEEeEEEEEeechhchhHHhhc-------------C------------CCCCchhhHHHHHHHHHHHHHhhh
Q psy12819 256 DHNVQCGHVLYRRTKVTSMSFADIGEVAFA-------------K------------GPAWGRRYARFARICILLGLFLAY 310 (675)
Q Consensus 256 ~~~~~~~v~~~~~~iv~~lGY~~fG~~~~~-------------n------------lp~~~~~~~~~~~l~~~l~~~~s~ 310 (675)
|.+| ++..+..+..+ .|+.|--.+.+ | ..++ .+...++.++..+++.+||
T Consensus 213 ~~~k---~i~~Gs~i~li-~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~fa~~Ai~TSF 287 (403)
T PRK15132 213 KLRW---VFIIGSAIPLV-AYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVAS-PHVELAVHLFADLALATSF 287 (403)
T ss_pred HHHH---HHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccC-hHHHHHHHHHHHHHHHHHH
Confidence 7776 44333322221 12222111111 1 1123 4666777888888888888
Q ss_pred cceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchhhhHHHHHHhhhhhh
Q psy12819 311 FGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPVSMVANLLMGTGLGI 389 (675)
Q Consensus 311 Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~g~~~~~~l~filP~ 389 (675)
--+...+.|.+.|.++++++...|.+ +.+.++++++++|...|+ |...+++++.....+.+++|+
T Consensus 288 lGv~lgl~d~l~d~~~~~~~~~~r~~--------------~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~ 353 (403)
T PRK15132 288 LGVALGLFDYLADLFQRRNTVGGRLQ--------------TGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPS 353 (403)
T ss_pred HHHHHHHHHHHHHHHccCccccCCch--------------hehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55222447777776654433222221 223468999999999999 677777833456788999999
Q ss_pred hhheeecc
Q psy12819 390 TFYYIVYK 397 (675)
Q Consensus 390 ~fy~~~~~ 397 (675)
+.-||.|+
T Consensus 354 ~m~~~~r~ 361 (403)
T PRK15132 354 LLVWQSRK 361 (403)
T ss_pred HHHHHHhh
Confidence 99999876
No 16
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.77 E-value=6.2e-20 Score=201.21 Aligned_cols=227 Identities=20% Similarity=0.210 Sum_probs=157.5
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHhhHHHHHHHh
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD----PLAESFTRYRNSIHAL 506 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~----~~~~~~~~~~~~~~~~ 506 (675)
||+|++++++|++|+++|+|+|+||+||+++||+.|++++++++.++.||.++|.+++++ ++.++|+|.++...+.
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999887664 2344555544433211
Q ss_pred -hhhhc-------cceee-eehHHHHHHHHHHHhhhcC-CCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy12819 507 -CVRFD-------LYSRF-ELSSKISIRISQVINHYTG-TELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 576 (675)
Q Consensus 507 -~~~~g-------~~~~~-~~~i~~~~~l~~~~~~~~~-~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~ 576 (675)
.+.+. .++.. .+.++++|+++++.+...+ ...++..+.++..++++|++++||+++++++|.++++++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~ 160 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFY 160 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccce
Confidence 00000 01111 1124588888888766543 35677888888888889999999999999999999999988
Q ss_pred HHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhccCccc
Q psy12819 577 GLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTG 656 (675)
Q Consensus 577 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~~~~ 656 (675)
.+..+.++........+.+...+. .++...+ .+.+..++...|++.+ -+. +.++.+.||+|+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~i~~faf~~--~~~-~~~i~~~m~~~~~~~ 225 (409)
T PF01490_consen 161 FIVIVVIYIISYGPGEPSGVPSPP-----VWPFISF-------SGFFSAFGIIIFAFSC--HPN-LPPIQSEMKDPSKFK 225 (409)
T ss_pred eeeeecceeeeeeccccccccccc-----ccccchh-------hHHHHhhhhhhhhhhc--ccc-cceeeeeccCCcccc
Confidence 644444444443321111111110 1111222 2466788999999988 777 999999999999977
Q ss_pred chHHHHHHHHHHhhhc
Q psy12819 657 GIFLTVLVAVICTHCS 672 (675)
Q Consensus 657 ~~~~~~~~~~~~~~~~ 672 (675)
..-..+...++++..+
T Consensus 226 ~~~~~~~~s~~~~~~~ 241 (409)
T PF01490_consen 226 KMKKVLSISMIICFII 241 (409)
T ss_pred ccceeeeehhhhhhHH
Confidence 4444444444433333
No 17
>KOG1303|consensus
Probab=99.76 E-value=4.7e-18 Score=183.31 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=116.6
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHhhHHHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDP---LAESFTRYRNSIHA 505 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~---~~~~~~~~~~~~~~ 505 (675)
.+++.||++|.+|.+++.+|.|+|+||+|++++||+.|+++++..++++.||..+|.++.+.. ..+.+.+|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 456689999999999999999999999999999999999999999999999999886543322 12233455555555
Q ss_pred hhhhhccceeeeeh---------------HHHHHHHHHHHhhhcCC--CCcchhHHHHHHHHHHHhhcCCCCCchhHHHH
Q psy12819 506 LCVRFDLYSRFELS---------------SKISIRISQVINHYTGT--ELDIRVYISAFLIPLILLSWVPNLKSLAPVSM 568 (675)
Q Consensus 506 ~~~~~g~~~~~~~~---------------i~~~~~l~~~~~~~~~~--~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~ 568 (675)
. +|...+.+++ +..++|++.+.+..... +++.+.|+++..++++|++++||++.++|.|.
T Consensus 114 a---fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 114 A---FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred H---hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 4 4433333322 45899999998765433 45678999999999999999999999999998
Q ss_pred HHHHHHH-HHHhheee
Q psy12819 569 VANLLMG-TGLGITFY 583 (675)
Q Consensus 569 ~a~~~i~-~~~~~v~~ 583 (675)
.+.+..+ ++.+.+..
T Consensus 191 ~~avmS~~~a~~~~~~ 206 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVL 206 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766554 34444433
No 18
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.72 E-value=1.9e-18 Score=187.71 Aligned_cols=325 Identities=13% Similarity=0.111 Sum_probs=217.1
Q ss_pred HHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcCCcccc
Q psy12819 24 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGR 103 (675)
Q Consensus 24 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g~~~~~ 103 (675)
+...+++++|+|++++|.++++.|...+.+.+++.+.++.++...+.|...+.+ +..++.+.+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-----~~~~~~~~~~~~~-------- 69 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-----GGASFNTIAKDLL-------- 69 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh--------
Confidence 345678999999999999999999999999999999999999999999876542 2479999999998
Q ss_pred cchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhhHHHHH
Q psy12819 104 RYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLL 183 (675)
Q Consensus 104 ~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~~~~~~ 183 (675)
||++++++++...+.++..+++|.+..++.+..+++.+...+.+.+...+++..++.++. .+..+...+++.+.+..
T Consensus 70 --G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~ 146 (381)
T TIGR00837 70 --GKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFG 146 (381)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988654444455544444444444444 44556777777666665
Q ss_pred HHHHhheeEEEEccc--CCCCCCCCC-CCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCCCcccc
Q psy12819 184 MGTGLGITFYYIVWD--LHKPMEMPQ-IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQ 260 (675)
Q Consensus 184 ~~~~~~ii~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~~~~~ 260 (675)
.+..++........+ .....+... ...+.++..++++..++|++|.+++++.++ +++++||.+|
T Consensus 147 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~------------~~~~~k~i~r- 213 (381)
T TIGR00837 147 KIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKY------------YDGNVKKVKK- 213 (381)
T ss_pred HHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHH------------hccCHHHHHH-
Confidence 444332222111111 110000000 124556788899999999999999998888 7224445555
Q ss_pred cceeEEeEEEEEee---------chhchhH---Hhhc--C----------CCCCchhhHHHHHHHHHHHHHhhhcc--ee
Q psy12819 261 CGHVLYRRTKVTSM---------SFADIGE---VAFA--K----------GPAWGRRYARFARICILLGLFLAYFG--TC 314 (675)
Q Consensus 261 ~~v~~~~~~iv~~l---------GY~~fG~---~~~~--n----------lp~~~~~~~~~~~l~~~l~~~~s~Pl--~p 314 (675)
....+..+++++ |.....+ ..++ | .-++ .+...++.++..+++..|+.- .+
T Consensus 214 --aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~v~~~~~~al~tS~~g~~l~ 290 (381)
T TIGR00837 214 --SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKS-SAIELALELFSNFALASSFLGVTLG 290 (381)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443433332222 2222111 1111 1 0111 345667777777888888765 33
Q ss_pred eEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCcc-ccchh-hhHHHHHHhhhhhhhhh
Q psy12819 315 SVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLK-SLAPV-SMVANLLMGTGLGITFY 392 (675)
Q Consensus 315 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~-~v~~~-g~~~~~~l~filP~~fy 392 (675)
. .|.+.+.+++++++..|. +..+...+++.++|.+.|+.. ..+++ | .+...+.+++|++++
T Consensus 291 ~--~d~l~~~~~~~~~~~~~~--------------~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 291 L--FDYLADLFKFDDSKKGRF--------------KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLA 353 (381)
T ss_pred H--HHHHHHHhCCCcccCCCc--------------hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3 566666665533222221 122335788899999999966 77777 6 777789999999999
Q ss_pred eeecc
Q psy12819 393 YIVYK 397 (675)
Q Consensus 393 ~~~~~ 397 (675)
+|.||
T Consensus 354 ~~~r~ 358 (381)
T TIGR00837 354 WKARK 358 (381)
T ss_pred HHHHh
Confidence 99775
No 19
>KOG4303|consensus
Probab=99.56 E-value=1.3e-15 Score=152.13 Aligned_cols=162 Identities=16% Similarity=0.095 Sum_probs=128.0
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCC-----chhHhhHHHHHH
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPL-----AESFTRYRNSIH 504 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~-----~~~~~~~~~~~~ 504 (675)
..|.+.++|.+|..|++.|.-|++||+|...+||+ |+..++.+|.+|.||.++|++|..+++ ++..++|-.++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 34678999999999999999999999999999999 599999999999999999999887776 345566666664
Q ss_pred HhhhhhccceeeeehHHHHHHHHHHH--------------hhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q psy12819 505 ALCVRFDLYSRFELSSKISIRISQVI--------------NHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVA 570 (675)
Q Consensus 505 ~~~~~~g~~~~~~~~i~~~~~l~~~~--------------~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a 570 (675)
.+ ..-+..++.. .+++.+.-++ ..+++.+.+++-|+.+....++|.+|+|+++-++.+|.++
T Consensus 193 ~C-~~P~lGgr~V---~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c 268 (524)
T KOG4303|consen 193 FC-YKPGLGGRWV---LAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC 268 (524)
T ss_pred Hh-cCCCcchhee---eHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 33 2222222321 1233222221 1244456789999999999999999999999999999999
Q ss_pred HHHHHHHHhheeeeeecccccccccc
Q psy12819 571 NLLMGTGLGITFYYIVYKVAVVPAKI 596 (675)
Q Consensus 571 ~~~i~~~~~~v~~~~~~~~~~~~~~~ 596 (675)
.++.++.-++++.||......|.+..
T Consensus 269 t~sH~viN~i~v~YCLs~~~dW~wsk 294 (524)
T KOG4303|consen 269 TISHLVINLIMVLYCLSFVSDWSWSK 294 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccee
Confidence 99999999999999999888887654
No 20
>KOG1305|consensus
Probab=99.55 E-value=1e-14 Score=156.85 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=146.2
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR 509 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (675)
++++|...+++|+.|+++|+||+++|+||++.|++.|+++++++|.++.++.+++.++.++.+.++|.+.++...+..+.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 45678999999999999999999999999999999999999999999999999998877777666666666655321110
Q ss_pred --------hccceeeeehHHHHHHHHHHHhhhcCCC------Ccchh-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q psy12819 510 --------FDLYSRFELSSKISIRISQVINHYTGTE------LDIRV-YISAFLIPLILLSWVPNLKSLAPVSMVANLLM 574 (675)
Q Consensus 510 --------~g~~~~~~~~i~~~~~l~~~~~~~~~~~------~~~~~-~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i 574 (675)
....+...+.+.++|.+..+.......+ .+++. +++....++.||++.|++++|+++|.++..++
T Consensus 83 ~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~ 162 (411)
T KOG1305|consen 83 VDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASV 162 (411)
T ss_pred eeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 0011111122336777775544322211 12333 46777888899999999999999999999999
Q ss_pred HHHHhheeeeeecccccccccccCcceeeccccCCCC-CcccccccCCCCccchhhhhhhhcccccccccccchhhhccC
Q psy12819 575 GTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDY-WDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG 653 (675)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~ 653 (675)
++.++++.++.+..... ..+.....+ +.+. +..+ -..|.++.+..||.. ..++.+.||||+
T Consensus 163 ~~fv~~vv~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~----~~~pi~~faf~Ch~n-------~~~i~~El~~~s 224 (411)
T KOG1305|consen 163 VYFVVLVVYKYFQGPCA--LGRLSYLVP-----NLSSFSSLF----YALPIFVFAFTCHSN-------VFPIYNELKDRS 224 (411)
T ss_pred HHHHHHHHHHHHhcccc--cCCcccccC-----Ccchhhhhh----hhhhhhheeeecccc-------ceeeeeeeeCch
Confidence 99999988877664320 111111111 1111 2222 148899999999985 468888999998
Q ss_pred c
Q psy12819 654 L 654 (675)
Q Consensus 654 ~ 654 (675)
.
T Consensus 225 ~ 225 (411)
T KOG1305|consen 225 V 225 (411)
T ss_pred H
Confidence 7
No 21
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.51 E-value=1.6e-14 Score=154.67 Aligned_cols=360 Identities=16% Similarity=0.108 Sum_probs=211.9
Q ss_pred CCCCCCCCCCCCccC-CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q psy12819 1 METFLPQDGSKTESN-NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR 79 (675)
Q Consensus 1 ~~~~~p~~~~~~~~~-~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~ 79 (675)
|++-|..-.++.+.. =+..+..-.+.+..+++|+|+|+||-.....|.+++++++++++.+++|+...|.|...+.
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~--- 77 (443)
T PRK13629 1 MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG--- 77 (443)
T ss_pred CCCchhhhhcccccCCCccccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 444454433322222 2344556668999999999999999999999999999999999999999999999976543
Q ss_pred cCCCCCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC-CccHHHHHHHHH
Q psy12819 80 TKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT-ELDIRVYISAFL 158 (675)
Q Consensus 80 ~~~~~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~-~~~~~~~~~i~~ 158 (675)
+++..++.+++++.| ||.++.+..+..++..|..+.+|...+.+.+++.+.+..+. +.+++...+++.
T Consensus 78 -~~~~~~i~~v~~~~l----------G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv 146 (443)
T PRK13629 78 -SNPSGNITETVEEHF----------GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLL 146 (443)
T ss_pred -CCCCCCHHHHHHHHc----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHH
Confidence 134579999999998 78899999999999999999999988888887765554432 345544444444
Q ss_pred HHHHHhhcccCccccchhhhHHHHHHHHHhheeEEEEccc--CCCCCCC-----CCCCCC---CchhhHhHHHHhhhccc
Q psy12819 159 IPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWD--LHKPMEM-----PQIADI---STMPTFFSIVIFAIEAI 228 (675)
Q Consensus 159 ~~~~pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~~--~~~~~~~-----~~~~~~---~~~~~~~~i~~faf~~h 228 (675)
+.+....+..+ +..-+++-+=+...+..++....+...+ .....+. +...+. ..+..++|+++|||+.|
T Consensus 147 ~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~ 225 (443)
T PRK13629 147 LLMAFVIWFGK-DLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFS 225 (443)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhcc
Confidence 44444444332 4444444333332332232222222211 1111111 111111 23778999999999999
Q ss_pred eEeeeeccccccCCCchhhhhhh----cC--CCCcccccceeEEeEEEEEee---------chhc---hhHHhhcCCC--
Q psy12819 229 GVVISFRTATLLSRPVISRELMI----GN--GRDHNVQCGHVLYRRTKVTSM---------SFAD---IGEVAFAKGP-- 288 (675)
Q Consensus 229 ~~i~~i~~~~~~~~~~~~~~~M~----~~--p~~~~~~~~v~~~~~~iv~~l---------GY~~---fG~~~~~nlp-- 288 (675)
+.+|++... +|+.++ +| ++|.+| ++.++..+..++ |-+. +-+..++|.+
T Consensus 226 ~iIssl~~y--------~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~L 294 (443)
T PRK13629 226 PIVSSFVVS--------KREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVL 294 (443)
T ss_pred ccchHHHHH--------HHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHH
Confidence 999998776 222120 12 223333 444433322211 1111 1111111322
Q ss_pred --------C--Cc-----hhhHHHHHHHHHHHHHhhhcceeeEEeHHHhhhcC----CCCccccchhhhhccccCccchh
Q psy12819 289 --------A--WG-----RRYARFARICILLGLFLAYFGTCSVYTVIIAKNFS----KSSKISIRISQVINHYTGTELDI 349 (675)
Q Consensus 289 --------~--~~-----~~~~~~~~l~~~l~~~~s~Pl~p~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 349 (675)
+ +. ........++..+++..||--+-.-++|.+.+... +.++++...++ .-
T Consensus 295 s~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~----------~~ 364 (443)
T PRK13629 295 SYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGK----------LN 364 (443)
T ss_pred HHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHH----------HH
Confidence 1 00 12456666677778888875522222444333221 11111111111 11
Q ss_pred hH-HHHHHHHHHHHHhhcCCccccch-h-hhHHHHHHhhhhhhhhheeecc
Q psy12819 350 RV-YISAFLIPLILLSWVPNLKSLAP-V-SMVANLLMGTGLGITFYYIVYK 397 (675)
Q Consensus 350 r~-~~~~~~~~~~lA~~vP~~~~v~~-~-g~~~~~~l~filP~~fy~~~~~ 397 (675)
|. .+..++.++++++.=|++=++++ + |=+.+ .+.|++|...-+|.+.
T Consensus 365 ~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia-~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 365 TISMIFIMGSTWVVAYANPNILDLIEAMGAPIIA-SLLCLLPMYAIRKAPS 414 (443)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHH-HHHHHHHHHHHHccHH
Confidence 22 22357777899999999888886 4 44444 7788999988887665
No 22
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.43 E-value=2.7e-13 Score=147.61 Aligned_cols=221 Identities=14% Similarity=0.141 Sum_probs=153.5
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR 509 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (675)
+.+.+..++++++.++.+|+|+|+||+|++..|++++++++++.+.++++|.+++.|+.++.+.+. .++.+.+++.
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~--- 81 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDY--- 81 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHH---
Confidence 445688999999999999999999999999999999999999999999999999988665544331 3444554443
Q ss_pred hccceeee---------------ehHHHHHHHHHHHhhhcCCC-CcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q psy12819 510 FDLYSRFE---------------LSSKISIRISQVINHYTGTE-LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLL 573 (675)
Q Consensus 510 ~g~~~~~~---------------~~i~~~~~l~~~~~~~~~~~-~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~ 573 (675)
+|+.++.+ +.+..++.+++.+++....+ .+++.+.++...++.++++.++...++..|.+....
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 22222211 12348888998888755444 788888899999999999999999999999999999
Q ss_pred HHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhccC
Q psy12819 574 MGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG 653 (675)
Q Consensus 574 i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~ 653 (675)
+.+.++.+.++.... +.......+. .. +..|.- .=..+..++|+|.+ .+. +-++.+.||+++
T Consensus 162 v~~~~~l~~~~~~~~-~~~~l~~~~~-~~------~~~~~~-------~~~~ipv~vfsF~~--h~~-i~si~~~~~~~~ 223 (415)
T COG0814 162 VIYLVLLVVYLIPHW-NPANLFALPS-AS------QSFWKY-------LLLAIPVFVFSFGF--HGN-IPSLVNYMRKNS 223 (415)
T ss_pred HHHHHHHHHHHhccc-CHHHHhcccc-cc------hhhHHH-------HHHHhhHHHhhhhC--Ccc-chHHHHHhccch
Confidence 998887777755432 1000000000 00 111110 11455888899988 888 999999999877
Q ss_pred cccchHHHHHHHHHHhhhcc
Q psy12819 654 LTGGIFLTVLVAVICTHCSY 673 (675)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~ 673 (675)
.= ..--...+|.+...++|
T Consensus 224 ~~-~~~k~~~~~~~~~~vly 242 (415)
T COG0814 224 KK-AVRKAILIGSLIALVLY 242 (415)
T ss_pred hH-HHHHHHHHHHHHHHHHH
Confidence 63 22333334444443333
No 23
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.35 E-value=1.4e-12 Score=140.83 Aligned_cols=341 Identities=16% Similarity=0.126 Sum_probs=210.1
Q ss_pred ChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcC
Q psy12819 19 KDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKG 98 (675)
Q Consensus 19 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g 98 (675)
.+..-.+.+..+++|+|+|++|...++.||+..++..++...+++++..++.|..... +.+..++.|++++.|
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~----~~p~~~i~~~~~~~f--- 76 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS----KNPCEDITEVVEEHF--- 76 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHc---
Confidence 4556778999999999999999999999999888888888889899999998874322 223689999999998
Q ss_pred CcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhh
Q psy12819 99 PAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSM 178 (675)
Q Consensus 99 ~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~ 178 (675)
||++..+..+...+..+..+.+|....++.+.+.+.+....+.+.+....+..+.+.-.......+.+.+++.
T Consensus 77 -------Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~ 149 (397)
T TIGR00814 77 -------GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMG 149 (397)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 7889999999999999999999999999999988887544344445333333333323333445566666665
Q ss_pred HHHHHHHHHhheeEEEEcccC--CCCCCCCCC-CCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcC--
Q psy12819 179 VANLLMGTGLGITFYYIVWDL--HKPMEMPQI-ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGN-- 253 (675)
Q Consensus 179 ~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~-- 253 (675)
+-+...++.++.+..+...+. ......+.. ..+.++..++++.++||.+|+.+++...+ +||.. ++
T Consensus 150 il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~--------~~~~~-~~~~ 220 (397)
T TIGR00814 150 PLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAIS--------YREEY-GDKE 220 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHH--------HHHHc-CCcc
Confidence 555433333333332222111 111111111 12456889999999999999999998744 11112 21
Q ss_pred --CCCcccccceeEEeEEEEEee---------chhchhHHhh----cCC---------CCCchhhHHHHHHHHHHHHHhh
Q psy12819 254 --GRDHNVQCGHVLYRRTKVTSM---------SFADIGEVAF----AKG---------PAWGRRYARFARICILLGLFLA 309 (675)
Q Consensus 254 --p~~~~~~~~v~~~~~~iv~~l---------GY~~fG~~~~----~nl---------p~~~~~~~~~~~l~~~l~~~~s 309 (675)
++|.+| ....+..+..++ +.+. .++.+ +|+ .++ .....+..++-.+++..|
T Consensus 221 ~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~~~l~-~~~~~~a~~~nis~Ls~l~~~~~~-~~i~~~~~~f~~~Ai~tS 295 (397)
T TIGR00814 221 FAERKCLR---IMKGASLILVATVMFFVFSCVLSLS-PAEAVAAKEQNISILSYLANHFNA-AWISYAGPIVAIVAISKS 295 (397)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHH
Confidence 223333 333333222211 2221 11211 122 222 356666777777788888
Q ss_pred hcceeeEEeHHHhhhcC---CCCccccchhhhhccccCccchhh-HHHHHHHHHHHHHhhcCCccccch-h-hhHHHHHH
Q psy12819 310 YFGTCSVYTVIIAKNFS---KSSKISIRISQVINHYTGTELDIR-VYISAFLIPLILLSWVPNLKSLAP-V-SMVANLLM 383 (675)
Q Consensus 310 ~Pl~p~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~lA~~vP~~~~v~~-~-g~~~~~~l 383 (675)
|--+-..+.+.+.+.+. +.+.++...|+. -| +....++.++.+|+.=|++=++.+ + |=+.+ .+
T Consensus 296 FlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a-~i 364 (397)
T TIGR00814 296 FFGHYLGAREGLNGIVLNSLKMKGKKINIRKL----------NRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIA-MI 364 (397)
T ss_pred HHHHHHhHHHHHHHHHHHHhcccccccCHHHH----------HHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHH-HH
Confidence 76522222444333221 111111111111 11 222357777899999999888886 4 44444 77
Q ss_pred hhhhhhhhheeeccc
Q psy12819 384 GTGLGITFYYIVYKV 398 (675)
Q Consensus 384 ~filP~~fy~~~~~~ 398 (675)
.|++|...-+|.+..
T Consensus 365 ~~~~p~~~~~~v~~l 379 (397)
T TIGR00814 365 LFLMPMYAIYKVPAL 379 (397)
T ss_pred HHHHHHHHHHccHHH
Confidence 889999888887753
No 24
>KOG3832|consensus
Probab=98.72 E-value=6.2e-08 Score=90.89 Aligned_cols=219 Identities=14% Similarity=0.217 Sum_probs=130.4
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhh----------hcCCCCC-
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYR----------RTKVTSM- 85 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~----------~~~~~~~- 85 (675)
.-|..-....+.|-++|+|.|+||.||+.+||++++.++.+.+++++.+....+++....+. ++.++..
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 34555566788999999999999999999999999999999999999999999887643220 1001111
Q ss_pred ------------CHHHHHHHH------------H------hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhh
Q psy12819 86 ------------SFADIGEVA------------F------AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKN 135 (675)
Q Consensus 86 ------------sy~~l~~~~------------~------~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~ 135 (675)
.|+.--++- | +.|.+....+.|.+-.+..+++++++||-...|--.+--.
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 122111110 0 1111222345677788888999999999999887665544
Q ss_pred HHHHHHhhcC------------CC----c--------cHHHHHHHHHHHH-HHhhcc--cCccccchhhhHHHHHHHHHh
Q psy12819 136 FSKVINHYTG------------TE----L--------DIRVYISAFLIPL-ILLSWV--PNLKSLAPVSMVANLLMGTGL 188 (675)
Q Consensus 136 l~~l~~~~~~------------~~----~--------~~~~~~~i~~~~~-~pl~~~--~~l~~L~~~S~~~~~~~~~~~ 188 (675)
.-++.....+ .+ | ..|++.+|+.+++ +|+.+. ++-+++.....+.-..-. ..
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~-~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAF-IL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhc-cc
Confidence 4443332111 01 1 2466677765544 577663 344555544444333211 11
Q ss_pred heeEEEEcccCCC-CCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819 189 GITFYYIVWDLHK-PMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA 237 (675)
Q Consensus 189 ~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 237 (675)
.+.+.- .+...+ ....++....-++-..++..+|+|.||.+.|.....
T Consensus 250 g~~l~t-mqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~ga 298 (319)
T KOG3832|consen 250 GISLAT-MQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGA 298 (319)
T ss_pred hhhhhh-hhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCC
Confidence 111110 000001 111222234556777888999999999999988776
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.45 E-value=5.1e-06 Score=94.57 Aligned_cols=220 Identities=11% Similarity=0.087 Sum_probs=115.6
Q ss_pred CCccCCCCChHHHHHHHHHhhhccccchHHHHH--HhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819 11 KTESNNIGKDGETLTHLLKASLGTGILSMPYAF--RNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA 88 (675)
Q Consensus 11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~ 88 (675)
+++.+++.+.++.+..-+.+++|+|+..+|-.. ...|-. .++..++.++.+...+....|.....++ ....|.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~----sGg~Y~ 97 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPK----AGSAYL 97 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCccee
Confidence 345677899999999999999999999999643 347754 4445556666666655555555443322 112232
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC-----------CCccH-HHHHHH
Q psy12819 89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG-----------TELDI-RVYISA 156 (675)
Q Consensus 89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~-----------~~~~~-~~~~~i 156 (675)
-. ++++ |+...+++.....+.....+.+.....++.+..++....+ ..... .....+
T Consensus 98 y~-~~~~----------G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~ 166 (557)
T TIGR00906 98 YS-YVTV----------GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV 166 (557)
T ss_pred eH-HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHH
Confidence 22 2334 5566666666665544433333333334444444432100 00101 111222
Q ss_pred HHHHHHHhhcccCccccchhhhHHHHHHHHHhheeEEEEc--ccCCCCC-----CCCCC--CCCCchhhHhHHHHhhhcc
Q psy12819 157 FLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIV--WDLHKPM-----EMPQI--ADISTMPTFFSIVIFAIEA 227 (675)
Q Consensus 157 ~~~~~~pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~--~~~~~~~-----~~~~~--~~~~~~~~~~~i~~faf~~ 227 (675)
..+.++-....+..+..++++.+.....+..+++++.... .+..++. ....+ ..+.++..+.....|+|.|
T Consensus 167 ~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~G 246 (557)
T TIGR00906 167 CLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIG 246 (557)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhh
Confidence 2222222334456666666665554433332222221111 1111111 00011 1234567778889999999
Q ss_pred ceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819 228 IGVVISFRTATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 228 h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
--.+...-.| + |||+| .++
T Consensus 247 fd~v~~~aeE------------~-knP~r~iP~ 266 (557)
T TIGR00906 247 FDAIATTGEE------------V-KNPQRAIPI 266 (557)
T ss_pred HHHHHHhHHh------------c-cCccccccH
Confidence 9888888888 8 99987 444
No 26
>PRK10655 potE putrescine transporter; Provisional
Probab=97.96 E-value=1.9e-05 Score=87.47 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=45.4
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCG 73 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~ 73 (675)
++++.+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.......+.|..
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~ 62 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCG 62 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999988886 355566666666665555555543
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=97.94 E-value=3.5e-05 Score=85.16 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=120.8
Q ss_pred CCCCChHHHHHHHHHhhhccccchHHHHHH-hcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
+++.+.++.+...+++++|+|++.+|.... ..|.. +.+..++.+++.......+.|...+.++ ....-+-.++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPV-----AGSPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcceeeHHH
Confidence 467889999999999999999999997644 44542 4445555666666666666665544322 1222233444
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHH-----------HHHHHHHHHH
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRV-----------YISAFLIPLI 162 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~-----------~~~i~~~~~~ 162 (675)
.+ ||...+++.....+.....+..+....++.+..+++.. +.+.+... +..+....++
T Consensus 76 ~~----------G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (429)
T TIGR00909 76 AM----------GELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV-GLDLPAVLTAKPGNGGVFNLPALLIVLFL 144 (429)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccCchhhhcCCcccccccHHHHHHHHHH
Confidence 55 56666666666666655555666666667766666521 11111111 1112222223
Q ss_pred HhhcccCccccchhhhHHHHHHHHHhheeEEEEcc--cCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeecccccc
Q psy12819 163 LLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVW--DLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLL 240 (675)
Q Consensus 163 pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~ 240 (675)
-....+..+...+++.+.....+..+++++..... +.++.++..+ .++.++..++....|+|.+.-.....-.|
T Consensus 145 ~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E--- 220 (429)
T TIGR00909 145 TYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMP-MGFGGVGAATALVFFAFIGFEAISTAAEE--- 220 (429)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCC-CcHHHHHHHHHHHHHHHhhHHHHHhhHHh---
Confidence 33344556666666665555443333221111111 1111111111 23445677788899999999888888888
Q ss_pred CCCchhhhhhhcCCCC-ccc
Q psy12819 241 SRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 241 ~~~~~~~~~M~~~p~~-~~~ 259 (675)
+ |||+| .+|
T Consensus 221 ---------~-~~p~r~ip~ 230 (429)
T TIGR00909 221 ---------V-KNPERDIPK 230 (429)
T ss_pred ---------c-cCccccccH
Confidence 8 89865 455
No 28
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.90 E-value=1.9e-05 Score=85.79 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=88.4
Q ss_pred HHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHhhHHHHHHHhh-hhhccceee
Q psy12819 439 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN-TDPLAESFTRYRNSIHALC-VRFDLYSRF 516 (675)
Q Consensus 439 ~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 516 (675)
.....++.+|+|++++|.+++..|...+.+.+++.++++.++..++.+.. +.|+..++.+|.+...+-. +....+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999887643 4455567777777763211 101001110
Q ss_pred ee--------hHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhheee
Q psy12819 517 EL--------SSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFY 583 (675)
Q Consensus 517 ~~--------~i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~ 583 (675)
.. .+..++.+.+++++....+.+.....++..+++.++.+ +..+..++++.+.....+..++.+..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01134666666654333333444444444444445444 56678888777766665555444433
No 29
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.90 E-value=9.1e-05 Score=80.07 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHhhHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD-PLAESFTRYRNS 502 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~-~~~~~~~~~~~~ 502 (675)
+|.+..++..-+.-+.||+|+|+||.+-+..|+.+++++++++.++.+||..++.|.+.+ +...++.++.|.
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~ 79 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKD 79 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 344778899999999999999999999999999999999999999999999999875443 333344444433
No 30
>PRK10483 tryptophan permease; Provisional
Probab=97.77 E-value=0.00027 Score=76.50 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHhhHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD-PLAESFTRYRNS 502 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~-~~~~~~~~~~~~ 502 (675)
++.+.+++.+-+.-+.||+|+|+||.+-++.|.++++++++++..+.+|+..+++|.+.+ +...++.++.|.
T Consensus 9 ~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~ 81 (414)
T PRK10483 9 TSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKD 81 (414)
T ss_pred CCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999885444 333344444443
No 31
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.74 E-value=0.0002 Score=77.74 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy12819 434 TDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD 490 (675)
Q Consensus 434 s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~ 490 (675)
+..++.+.+.-+.+|+|+|+||.+....|.+++++++++++.+.+|+.+++.|.+.+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~ 60 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH 60 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678899999999999999999999999999999999999999999999999885444
No 32
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.70 E-value=0.00022 Score=77.54 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819 433 VTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN 488 (675)
Q Consensus 433 ~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~ 488 (675)
.+.+++.+.+.-+.+|+|+|+||.+.+..|.+++.+.++++..+.+|+..++.|..
T Consensus 3 ~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~ 58 (394)
T PF03222_consen 3 NSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVS 58 (394)
T ss_pred chHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999987744
No 33
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.66 E-value=6.2e-05 Score=81.14 Aligned_cols=208 Identities=11% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA 96 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 96 (675)
+.|..|.++.+..+++|+|++.+|...++.+---+.+..++.++.+.....++.+...+. +..+.-|..++++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~------p~~~~~~~~~~~~- 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF------PEKNFSEILSKYL- 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHh-
Confidence 567889999999999999999999987664333355566677777777777777765543 2347889999998
Q ss_pred cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchh
Q psy12819 97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV 176 (675)
Q Consensus 97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~ 176 (675)
||+...++......+....+.......+|.++... -.+.+. ....+..+...-....+.++..+.+
T Consensus 75 ---------Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~tp~-~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 75 ---------GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LPRTPI-IVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCH-HHHHHHHHHHHHHHHHccHHHHHHH
Confidence 66667777766665555444333333333333221 112222 2222222222333344567777776
Q ss_pred hhHHHHHHHHHh-heeEEEEcccCCCCCCCCC-C-CCCCchhhHh-HHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819 177 SMVANLLMGTGL-GITFYYIVWDLHKPMEMPQ-I-ADISTMPTFF-SIVIFAIEAIGVVISFRTATLLSRPVISRELMIG 252 (675)
Q Consensus 177 S~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~ 252 (675)
+.+-....+... +++......+ .+.+...+ + .++.+..... +...++|.+.........+ + +
T Consensus 141 ~~i~~~~~i~~~~~il~~~~~~~-~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~------------~-~ 206 (359)
T TIGR00912 141 AEILLIIFLILFILVLILLAPKL-GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPL------------L-S 206 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH------------h-C
Confidence 666554443331 2221111111 11111111 1 2333333333 3667888766655555555 6 7
Q ss_pred CCCCccc
Q psy12819 253 NGRDHNV 259 (675)
Q Consensus 253 ~p~~~~~ 259 (675)
+|++.+|
T Consensus 207 ~~~~~~k 213 (359)
T TIGR00912 207 KKKKIKK 213 (359)
T ss_pred ChhhhHH
Confidence 7777776
No 34
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.61 E-value=0.00028 Score=78.63 Aligned_cols=214 Identities=13% Similarity=0.061 Sum_probs=117.4
Q ss_pred CCccCCCCChHHHHHHHHHhhhccccchHH-HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHH
Q psy12819 11 KTESNNIGKDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFAD 89 (675)
Q Consensus 11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~ 89 (675)
.++.+++.+..+..+..+.+++|+|++.+| .+.+++|-. +++..++.+++....+..+.|.....+ +..+.-+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P-----~~Gg~~~ 80 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANP-----DTGSFST 80 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHH
Confidence 466788999999999999999999999999 678888853 566666666666655555555443322 2345566
Q ss_pred HHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccC
Q psy12819 90 IGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPN 169 (675)
Q Consensus 90 l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 169 (675)
.+++.+ ||...+++.....+.....+.+.....++.++...+ +.+...+.++...+ .-......
T Consensus 81 ~~~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~-~~~~n~~g 144 (452)
T TIGR01773 81 YADDAI----------GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-----DIPLWLFSLILTIV-LTLTNLYS 144 (452)
T ss_pred HHHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHH-HHHHHHHh
Confidence 677776 555666666655554444444433344444443322 22222222222222 22223334
Q ss_pred ccccchhhhHHHHHHHH---HhheeEE-EEcccCCC-----CCCC---C-C-CCCCCchhhHhHHHHhhhccceEeeeec
Q psy12819 170 LKSLAPVSMVANLLMGT---GLGITFY-YIVWDLHK-----PMEM---P-Q-IADISTMPTFFSIVIFAIEAIGVVISFR 235 (675)
Q Consensus 170 l~~L~~~S~~~~~~~~~---~~~ii~~-~~~~~~~~-----~~~~---~-~-~~~~~~~~~~~~i~~faf~~h~~i~~i~ 235 (675)
.+..+.+.....+..+. .++++.. ......++ .++. . . ...+.++..++....|+|.|--.+...-
T Consensus 145 v~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a 224 (452)
T TIGR01773 145 VKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAA 224 (452)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHH
Confidence 44444444332222111 1111100 00011110 0110 0 0 1122347778888999999999999988
Q ss_pred cccccCCCchhhhhhhcCCCC-ccc
Q psy12819 236 TATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 236 ~~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
.| + |||+| .+|
T Consensus 225 ~E------------~-k~P~r~iPr 236 (452)
T TIGR01773 225 AE------------S-SNPIKSITR 236 (452)
T ss_pred Hh------------h-cChhhHHHH
Confidence 88 8 99976 455
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=97.48 E-value=0.00077 Score=75.20 Aligned_cols=212 Identities=10% Similarity=0.044 Sum_probs=109.6
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
+.+++.+.++..+.-+.++||+|++..|.. .+.+|- ..++..++.+++.+..+.-+.|..... ++..++.+-+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-----P~sGg~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-----PVTGSFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence 366779999999999999999999998875 666775 344555666666666666665544433 2245677777
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
++.+ |+....++.....+.....+.+.....+..++... + +.....+..+...++.-+ ..+..+
T Consensus 81 ~~~~----------g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~----p-~~~~~~~~~~~~~~~~~l-N~~gv~ 144 (461)
T PRK10746 81 HRYM----------SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF----P-EMAQWIPALIAVALVALA-NLAAVR 144 (461)
T ss_pred HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C-CCchHHHHHHHHHHHHHH-HHHhHH
Confidence 7777 44444555554444433333332223333333222 1 233333333322222222 222333
Q ss_pred ccchhhh----HHHHHHHH----HhheeEEEEcccCC--CCCCCC----C-CCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819 172 SLAPVSM----VANLLMGT----GLGITFYYIVWDLH--KPMEMP----Q-IADISTMPTFFSIVIFAIEAIGVVISFRT 236 (675)
Q Consensus 172 ~L~~~S~----~~~~~~~~----~~~ii~~~~~~~~~--~~~~~~----~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~ 236 (675)
..+.+.. +-+..++. ++.+.......+.+ +.++.. . ...+.++..++....|+|.+--.+...-.
T Consensus 145 ~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~ 224 (461)
T PRK10746 145 LYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAG 224 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3333221 11111111 11111111000100 011110 1 11244567888999999999888888888
Q ss_pred ccccCCCchhhhhhhcCCCCc-cc
Q psy12819 237 ATLLSRPVISRELMIGNGRDH-NV 259 (675)
Q Consensus 237 ~~~~~~~~~~~~~M~~~p~~~-~~ 259 (675)
| + |||+|- +|
T Consensus 225 E------------~-knP~k~iP~ 235 (461)
T PRK10746 225 E------------A-KNPQVTLRS 235 (461)
T ss_pred H------------h-cChhhHHHH
Confidence 8 8 898754 44
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.44 E-value=0.00036 Score=77.45 Aligned_cols=214 Identities=10% Similarity=0.038 Sum_probs=112.5
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
++.+++.+.++.+..-+..++|....+.+.+.++.|+..-+...++.+++....+..+.|.....++ ....-.-+
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-----~Gg~y~~~ 77 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-----AGGGYGFA 77 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHH
Confidence 3456778899998888888998555666888899998644444455555544445555554443321 23344455
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
++.+ ||...+++.....+.......++....++.+..+++. .......++...+. -+...+..+
T Consensus 78 ~~~~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-----~~~~~~~~~~~~~~-~~ln~~g~~ 141 (442)
T TIGR00908 78 RRAF----------GPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-----GPGWLAALVFYIVF-IGINILGVG 141 (442)
T ss_pred HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CchhHHHHHHHHHH-HHHHHHHHH
Confidence 5566 5666666666665555544555555566666555432 12222222221111 122333444
Q ss_pred ccchhhhHHHHHHHHHhheeEEEEcccC------CC-CCCCCCC--CCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819 172 SLAPVSMVANLLMGTGLGITFYYIVWDL------HK-PMEMPQI--ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR 242 (675)
Q Consensus 172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~------~~-~~~~~~~--~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~ 242 (675)
..+++..+..+..++.+++.......+. ++ .++...+ ..+.++..++....|+|.|.-.+...-+|
T Consensus 142 ~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----- 216 (442)
T TIGR00908 142 EAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE----- 216 (442)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4444444333222222111110000000 00 0001111 11224566777788999999888888888
Q ss_pred CchhhhhhhcCCCC-ccc
Q psy12819 243 PVISRELMIGNGRD-HNV 259 (675)
Q Consensus 243 ~~~~~~~M~~~p~~-~~~ 259 (675)
+ |||+| .+|
T Consensus 217 -------~-k~P~r~ipr 226 (442)
T TIGR00908 217 -------T-KNPKRDIPR 226 (442)
T ss_pred -------h-cCcccccCH
Confidence 8 99976 455
No 37
>KOG1287|consensus
Probab=97.33 E-value=0.00014 Score=79.07 Aligned_cols=342 Identities=15% Similarity=0.131 Sum_probs=170.6
Q ss_pred CCccCCCCChHHHHHHHHHhhhccccchHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819 11 KTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAG--LTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA 88 (675)
Q Consensus 11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~ 88 (675)
..+.+++.+.+.++..++.+++|+|+..-|....+.+ ...++++-+++|+++...+....|-.-.. ++...+|.
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i----pksGgd~a 82 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI----PKSGGDYA 82 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCcchh
Confidence 4556788999999999999999999999999865544 55566677778888888877776644322 22234565
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhh-HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q psy12819 89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKN-FSKVINHYTGTELDIRVYISAFLIPLILLSWV 167 (675)
Q Consensus 89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~-l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 167 (675)
-+.+ +| |+- ++-....+......-..+..+-+..++. +++.++. + +.++...-.+..+++..+ ..
T Consensus 83 yi~~-af--g~~-------~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c--~~p~~~~~lla~~~l~~l-t~ 148 (479)
T KOG1287|consen 83 YISE-AF--GPF-------PAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-C--DVPRVASKLLAAALLVLL-TL 148 (479)
T ss_pred hHHH-Hh--ccc-------hhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-C--CCchHHHHHHHHHHHHHH-HH
Confidence 5554 34 221 2222222222222222223444444444 4555442 1 222222222222222222 33
Q ss_pred cCccccchhhhHHHHHH---HHHhhee----EEEEcccCCC-CCCC---CCCCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819 168 PNLKSLAPVSMVANLLM---GTGLGIT----FYYIVWDLHK-PMEM---PQIADISTMPTFFSIVIFAIEAIGVVISFRT 236 (675)
Q Consensus 168 ~~l~~L~~~S~~~~~~~---~~~~~ii----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~ 236 (675)
.+...+++.+.+-.+++ +.++..+ .+...++..+ .++. ..-.+..++..++=.-.|||.+=..+=-+..
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vte 228 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTE 228 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchH
Confidence 34555555544433322 2222221 1222222111 1111 0112344577888888999999888878888
Q ss_pred ccccCCCchhhhhhhcCCCCc-ccccceeEEeEEEEEee------chhc---hhHHhhc----------CCCCCchhhHH
Q psy12819 237 ATLLSRPVISRELMIGNGRDH-NVQCGHVLYRRTKVTSM------SFAD---IGEVAFA----------KGPAWGRRYAR 296 (675)
Q Consensus 237 ~~~~~~~~~~~~~M~~~p~~~-~~~~~v~~~~~~iv~~l------GY~~---fG~~~~~----------nlp~~~~~~~~ 296 (675)
| + |||+|- ++ .+..++.++++. .|.+ ..|-..+ .++. +..
T Consensus 229 E------------i-knP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~----~~~ 288 (479)
T KOG1287|consen 229 E------------I-KNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGV----FAW 288 (479)
T ss_pred h------------h-cCccccchH---HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccc----hHH
Confidence 8 8 999875 44 444555444433 2221 1111111 1111 113
Q ss_pred HHHHHHHHHHHhhhcc--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccch
Q psy12819 297 FARICILLGLFLAYFG--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP 374 (675)
Q Consensus 297 ~~~l~~~l~~~~s~Pl--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~ 374 (675)
...++.+++.+-+.-- +.. -+.++. -.++.+...-... ++ .++.--|..+.+-.+..++..+++|++.+++
T Consensus 289 ~ip~~ValS~~G~~n~~ifs~--SR~~~~-~areG~LP~~~s~-i~---~~~~TP~~allf~~~~~i~~~~~~d~~~LIn 361 (479)
T KOG1287|consen 289 AIPFSVALSLIGSLNSVIFSS--SRLFYA-GAREGHLPAFFSM-IS---VRRFTPRPALLFSGLLSIVLSLIGDFDQLIN 361 (479)
T ss_pred HHHHHHHHHhhhhhhhHHHHH--HHHHHH-HHHccCccHHHHh-hc---CCCCCChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333333333333221 111 011110 0011110000000 00 0000112333344555667777889999999
Q ss_pred h-hhHHHHHHhhhhhhhhheeecc
Q psy12819 375 V-SMVANLLMGTGLGITFYYIVYK 397 (675)
Q Consensus 375 ~-g~~~~~~l~filP~~fy~~~~~ 397 (675)
+ +...+....+.+-+++|+|.++
T Consensus 362 y~sf~~~l~~~l~~~gll~lR~k~ 385 (479)
T KOG1287|consen 362 YVSFAYWLFRGLSMAGLLWLRWKH 385 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9 9999999999999999999776
No 38
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.28 E-value=0.0033 Score=70.59 Aligned_cols=211 Identities=15% Similarity=0.078 Sum_probs=109.0
Q ss_pred CCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
++.+.++.....+..++|+|++..|. +.+++|-...++..++.+++......-+.|.....++ ....|.+.+++.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~----~gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV----VSGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCHHHHHHHH
Confidence 56788888999999999999998775 5667774333455666666666666666555443321 234677777777
Q ss_pred HhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccc
Q psy12819 95 FAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLA 174 (675)
Q Consensus 95 ~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~ 174 (675)
+ |+...+++.....+.....+.+.....+..+... .+ +.....+..+...+ .-+...+..+..+
T Consensus 78 ~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~-~~~in~~gv~~~~ 141 (478)
T TIGR00913 78 V----------DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYW----TD-KVNPAVWIAIFYVF-IVIINLFGVKGYG 141 (478)
T ss_pred c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHH-HHHHHHhcchHHH
Confidence 7 4555555555554444333333333333333321 11 22333333322222 2222344455544
Q ss_pred hhhhHHHHHH---HHHhheeE-EEEcccCCCC--------CCCCCCC------CCCchhhHhHHHHhhhccceEeeeecc
Q psy12819 175 PVSMVANLLM---GTGLGITF-YYIVWDLHKP--------MEMPQIA------DISTMPTFFSIVIFAIEAIGVVISFRT 236 (675)
Q Consensus 175 ~~S~~~~~~~---~~~~~ii~-~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~i~~faf~~h~~i~~i~~ 236 (675)
.+........ +..++++. .....+.+.. .+...+. .+.++..++....|+|.|--.....-+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 4443332111 11111110 0000111100 0001111 134466777778999999888888888
Q ss_pred ccccCCCchhhhhhhcCCCC-ccc
Q psy12819 237 ATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 237 ~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
| + |||+| .+|
T Consensus 222 E------------~-knP~r~iPr 232 (478)
T TIGR00913 222 E------------A-ANPRKSIPR 232 (478)
T ss_pred h------------h-cChhhHHHH
Confidence 8 8 99976 444
No 39
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.18 E-value=0.00078 Score=74.63 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=43.4
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR 79 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~ 79 (675)
+++++.+.++.+...+.+++|+|++.+|...++.|-. .+...++.++.+. .+..|..|+..+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l----~~al~~aEL~s~ 63 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAM----SLAYVYARLATK 63 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 3567899999999999999999999999999987753 3444444444444 344444444433
No 40
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.16 E-value=0.00083 Score=75.17 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=114.5
Q ss_pred CCCCCCCCccCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCC
Q psy12819 5 LPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVT 83 (675)
Q Consensus 5 ~p~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~ 83 (675)
|+|+...++.+++.+.++.....+.++||+|++..|. +.+++|. ..+...++.+++......-+.| +... ...
T Consensus 9 ~~~~~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aE----l~s~-~~~ 82 (469)
T PRK11049 9 DDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGE----LLLS-NLE 82 (469)
T ss_pred hhccccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHH----HHHh-cCC
Confidence 3444434557788999999999999999999999876 6788886 3455555666655555544443 3221 112
Q ss_pred CCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy12819 84 SMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLIL 163 (675)
Q Consensus 84 ~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~p 163 (675)
..++.+.+++.+ ||...+++.....+...-...+.....+..++...+ +.....+.++...++.
T Consensus 83 ~~~~~~ya~~~~----------g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p-----~~~~~~~~~~~~~~~~- 146 (469)
T PRK11049 83 YKSFSDFASDLL----------GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP-----DLSDWVASLAVVLLLL- 146 (469)
T ss_pred CCcHHHHHHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHH-
Confidence 235566777777 556666666665544432222222223333332222 1223222222222222
Q ss_pred hhcccCccccchhhhHHHHHHH---HHhheeEEEEc-c--cCCC-----CCCC----CC-CCCCCchhhHhHHHHhhhcc
Q psy12819 164 LSWVPNLKSLAPVSMVANLLMG---TGLGITFYYIV-W--DLHK-----PMEM----PQ-IADISTMPTFFSIVIFAIEA 227 (675)
Q Consensus 164 l~~~~~l~~L~~~S~~~~~~~~---~~~~ii~~~~~-~--~~~~-----~~~~----~~-~~~~~~~~~~~~i~~faf~~ 227 (675)
+......+..+.+..+.....+ +.+++...... . +.++ .++. .. ...+.++..++....|+|.|
T Consensus 147 ~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G 226 (469)
T PRK11049 147 SLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVG 226 (469)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 2223334444444433222211 11111100000 0 0010 1110 01 11234577888899999999
Q ss_pred ceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819 228 IGVVISFRTATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 228 h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
--.+...-+| + |||+| .+|
T Consensus 227 ~e~~~~~a~E------------~-knP~r~iPr 246 (469)
T PRK11049 227 IELVGTTAAE------------T-KDPEKSLPR 246 (469)
T ss_pred HHHHHHHHHH------------h-cCHhhHHHH
Confidence 9999888888 8 99987 455
No 41
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.13 E-value=0.0011 Score=73.73 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=42.3
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCG 73 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~ 73 (675)
.+.+++.+.++.+...+++++|+|++.+|...++.|-. .+...++.++........+.|..
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~ 64 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMS 64 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999999999998887632 33344444444444444444433
No 42
>PRK11021 putative transporter; Provisional
Probab=97.13 E-value=0.002 Score=70.85 Aligned_cols=208 Identities=13% Similarity=0.048 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHhhhccccchHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819 19 KDGETLTHLLKASLGTGILSMPYAFRN-AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK 97 (675)
Q Consensus 19 s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 97 (675)
+.++++...+++++|+|++.+|-...+ +|- ..++..++.++........+.|...++++ ....-.-+++.+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-----aGG~y~y~~~~~-- 73 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-----AGGPAHFVGMAF-- 73 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHhHHHHh--
Confidence 567888999999999999999986544 453 45566666666666666666665554432 234444556666
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819 98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS 177 (675)
Q Consensus 98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S 177 (675)
||...+.+.............+......+.+..+++. .+.. .....+....++-+...+..+..+++.
T Consensus 74 --------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~ 141 (410)
T PRK11021 74 --------GPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---SSWQ-LLLAELLTLALLWLLNLRGASSSANLQ 141 (410)
T ss_pred --------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333444443333211111111111122233333221 1111 122211122222223344445555444
Q ss_pred hHHHHHHHHHhheeEEEEcccCCCCCCC-CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCCC
Q psy12819 178 MVANLLMGTGLGITFYYIVWDLHKPMEM-PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRD 256 (675)
Q Consensus 178 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~ 256 (675)
.+..+..+..+.........+..+.+.. ....++.++..++....|+|.+.-.+...-+| + |||+|
T Consensus 142 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E------------~-k~P~k 208 (410)
T PRK11021 142 TVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASE------------F-KNPER 208 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHh------------c-cCccc
Confidence 4333222211111111000011111000 01124456778888999999999999999999 8 99976
Q ss_pred -ccc
Q psy12819 257 -HNV 259 (675)
Q Consensus 257 -~~~ 259 (675)
.+|
T Consensus 209 ~iPr 212 (410)
T PRK11021 209 DFPR 212 (410)
T ss_pred cccH
Confidence 455
No 43
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.09 E-value=0.0013 Score=73.64 Aligned_cols=218 Identities=10% Similarity=0.072 Sum_probs=108.7
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAG-LTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.+++.+.++.++..+++++|+|++.+|....+.| -...++..++.++........+.|.....+++ ....-+-++
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~----sGG~y~y~~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL----DGGIYAYAR 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHH
Confidence 4677999999999999999999999999977644 22233445555555555555555544433220 122333445
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHH-HHHHHHHHHhhcccCcc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYI-SAFLIPLILLSWVPNLK 171 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~ 171 (675)
+.+ ||...+++.............++.....+.+..+++... .+.....+. .+....+.-....+..+
T Consensus 81 ~~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~~~~~~~~~~~~~~~~~~~ln~~Gi~ 149 (473)
T TIGR00905 81 EGF----------GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SGNPVPSILGASVLLWVFTFLVLRGVR 149 (473)
T ss_pred hHc----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence 566 455555555544333322233333333444444444211 111111111 11122222233444555
Q ss_pred ccchhhhHHHHHHHHHh---heeEEEEcccC--C-CCCC--CCC-CCCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819 172 SLAPVSMVANLLMGTGL---GITFYYIVWDL--H-KPME--MPQ-IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR 242 (675)
Q Consensus 172 ~L~~~S~~~~~~~~~~~---~ii~~~~~~~~--~-~~~~--~~~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~ 242 (675)
..+.+..+.....+..+ ++......+.. . +... .+. ...+..+..++....|+|.|--.....-+|
T Consensus 150 ~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----- 224 (473)
T TIGR00905 150 QAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGR----- 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHH-----
Confidence 55555554443322111 11111001110 0 0000 000 012334566777789999998888888888
Q ss_pred CchhhhhhhcCCCCccc
Q psy12819 243 PVISRELMIGNGRDHNV 259 (675)
Q Consensus 243 ~~~~~~~M~~~p~~~~~ 259 (675)
+ ||+++.+|
T Consensus 225 -------~-k~~r~iPr 233 (473)
T TIGR00905 225 -------A-KNKSDVGK 233 (473)
T ss_pred -------H-hccccchH
Confidence 8 67555555
No 44
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.08 E-value=0.00099 Score=74.53 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHHHhhhccccchHHHHHH-hcChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q psy12819 16 NIGKDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTHCSYILVQCGH 74 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~illi~~~~~~~~t~~lL~~~~~ 74 (675)
++.+.++.+...+.++||+|++.+|.... .+|....++..++.++........+.|...
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s 60 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLAN 60 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999998755 445332344455566655555554544433
No 45
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.07 E-value=0.0038 Score=67.87 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=46.0
Q ss_pred HHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819 439 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN 488 (675)
Q Consensus 439 ~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~ 488 (675)
...+.-+.+|+|+|+||-.....|.++++++++++..+++|+.+.|.|.+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~ 74 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLC 74 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37799999999999999999999999999999999999999999887743
No 46
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.96 E-value=0.0005 Score=75.90 Aligned_cols=202 Identities=13% Similarity=0.070 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819 19 KDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC-THCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK 97 (675)
Q Consensus 19 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 97 (675)
+.++++...+++++|+|+...| ...+.|.. ..+..++.+.+. ........|.. ++ .++....-+-.++++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~----~~-~p~~GG~y~~~~~~~-- 72 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELS----SA-YPSAGGIYVWVSRAF-- 72 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHH----TT-TTSSTTHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHh----cc-CCCcCeeeehhhhcc--
Confidence 5678888999999999999999 77777765 444444444443 34444444433 22 222345556667777
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819 98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS 177 (675)
Q Consensus 98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S 177 (675)
||...+++.....+.......++.....+.+...+......+......+.+..+...-....+..|..+++.
T Consensus 73 --------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 73 --------GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred --------cccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhh
Confidence 566667777777666666555555555555544443211100001112222222223333344555556555
Q ss_pred hHHHHHHH-HHhhe---eEEEEcc-cCCC---CC-CCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819 178 MVANLLMG-TGLGI---TFYYIVW-DLHK---PM-EMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA 237 (675)
Q Consensus 178 ~~~~~~~~-~~~~i---i~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 237 (675)
.......+ ..+++ ....... +..+ .+ +......+......++...|+|.|--.....-+|
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 213 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEE 213 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGG
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhccccccccccccc
Confidence 54444333 12111 1111111 1100 00 1111123445778889999999999888888888
No 47
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.90 E-value=0.0026 Score=70.96 Aligned_cols=212 Identities=13% Similarity=0.087 Sum_probs=110.7
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
+.+++.+.++..+.-++++||+|++..|-. .+++|- ..++..++.+++....+.-+.|.....+ ...++-+-+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P-----~aGg~y~~~ 82 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEP-----VAGSFSHFA 82 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHHHH
Confidence 477889999999999999999999988876 445564 3444445555555444444444333222 234555555
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
++.+ ||...+++.....+.....+.+.....++.++...+ +.+...+..+...+...+. ....|
T Consensus 83 ~~~~----------g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~i~~~~~~~lN-~~gv~ 146 (456)
T PRK10238 83 YKYW----------GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-----EIPTWVSAAVFFVVINAIN-LTNVK 146 (456)
T ss_pred HHHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHHHH-HHhHH
Confidence 5555 677777777777666555555544444554443322 2333333333222222222 22233
Q ss_pred ccchhhhHHHHHHH---HHhhe-eEE--EEcccCCC--CCCCC----C-CCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819 172 SLAPVSMVANLLMG---TGLGI-TFY--YIVWDLHK--PMEMP----Q-IADISTMPTFFSIVIFAIEAIGVVISFRTAT 238 (675)
Q Consensus 172 ~L~~~S~~~~~~~~---~~~~i-i~~--~~~~~~~~--~~~~~----~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~ 238 (675)
....+..+.....+ +.+++ .+. ......++ .++.. + ...+.++...++...|+|.|--.....-.|
T Consensus 147 ~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE- 225 (456)
T PRK10238 147 VFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAE- 225 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHh-
Confidence 33333332222111 11111 000 00011111 11100 0 011224456677889999998888888888
Q ss_pred ccCCCchhhhhhhcCCCC-ccc
Q psy12819 239 LLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 239 ~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
+ |||+| .+|
T Consensus 226 -----------~-knP~r~iPr 235 (456)
T PRK10238 226 -----------A-DNPEQSIPK 235 (456)
T ss_pred -----------h-cChhhHHHH
Confidence 8 89976 455
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.88 E-value=0.0055 Score=66.65 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred HHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhc-cCCCC-chhHhhHHHHHHHhhhhhccce
Q psy12819 437 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWR-NTDPL-AESFTRYRNSIHALCVRFDLYS 514 (675)
Q Consensus 437 ~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~-~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 514 (675)
.=.+.+..+.+|+|+|++|....+.||+..++..++...+++++.+++.|. ..+++ ..++.++.+.. +|+++
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~------fGk~~ 80 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEH------FGKNW 80 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH------cCHHH
Confidence 345678999999999999999999999997777777777777777766553 22222 34455554444 22221
Q ss_pred eeeeh---------------HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q psy12819 515 RFELS---------------SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLG 579 (675)
Q Consensus 515 ~~~~~---------------i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~ 579 (675)
..+.. .-.++.+.+.+.+....+...+....+..+..+-....+..+.+...+-+-....++.++
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 11111 113344444444333233333433333333332333444667777777555544455555
Q ss_pred heeeeeecc
Q psy12819 580 ITFYYIVYK 588 (675)
Q Consensus 580 ~v~~~~~~~ 588 (675)
.+..+...+
T Consensus 161 ~l~~~lip~ 169 (397)
T TIGR00814 161 LLSLYLIPH 169 (397)
T ss_pred HHHHHHHHH
Confidence 555444433
No 49
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0036 Score=67.24 Aligned_cols=203 Identities=13% Similarity=0.030 Sum_probs=121.1
Q ss_pred cCCCCChHHHHHHHHHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
-+++.+..+--+.-+...||+|.. +--.+.+.+|-- -++..+++|++.+.=++.|.|-..+ +++..|+.+.++
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-----~p~~gSF~~~a~ 84 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-----NPVSGSFSDYAR 84 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHH
Confidence 456677778788889999999974 455567777732 2334566777777767777664432 344679999999
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHH--HHhhcccCc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPL--ILLSWVPNL 170 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l 170 (675)
+.+ |+++.++++..-.....-.+.+-+..++..++..++. .+.+.+.++..+++ .=+...|..
T Consensus 85 ~~l----------G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-----vP~Wv~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 85 KYL----------GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-----VPQWVFALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred HHh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 6777777777777776666666666666666555543 35555554443333 334456666
Q ss_pred cccch-hhhHHHHHHHHH----hheeEEEEcccC--CCCCCCCC-----CCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819 171 KSLAP-VSMVANLLMGTG----LGITFYYIVWDL--HKPMEMPQ-----IADISTMPTFFSIVIFAIEAIGVVISFRTA 237 (675)
Q Consensus 171 ~~L~~-~S~~~~~~~~~~----~~ii~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 237 (675)
.++-+ ++++=+..++.. ...+......+. .+.+.... +..+.++..++-+.+|||.+.-.+--.-.|
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 66664 444433332211 111111111111 11122111 124456788999999999987666555555
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.83 E-value=0.0021 Score=68.16 Aligned_cols=204 Identities=12% Similarity=0.123 Sum_probs=113.4
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhc---ChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNA---GLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
+-|..|....+..+.+|+|++.+|...++. ||+ +. ++.+.....-..+..+..++. +..+..|..++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~---ll~~~~~l~~~~l~~~l~~~~------p~~~l~~~~~~ 70 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SV---LLGGLIGLLLALLIYYLLKRF------PGKTLVEISEK 70 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HH---HHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHH
Confidence 357889999999999999999999997665 454 33 333333333334444433322 34799999999
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
.+ ||+...++.....++.+......+...+|.++..+- .+.+. ..+........-....+.++.+
T Consensus 71 ~~----------Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p~TP~-~~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 71 LF----------GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----PETPI-WVIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcCCH-HHHHHHHHHHHHHHHhcCHHHH
Confidence 88 677777777777777766665555555555544322 12232 3333333333444456677777
Q ss_pred chhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCC--CCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819 174 APVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQI--ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI 251 (675)
Q Consensus 174 ~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~ 251 (675)
+..+.+-....+...+.+......+. +++...+. .++.++....-...+.|.+-....-+... +
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~-~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~------------~- 201 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNI-DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPF------------V- 201 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH------------c-
Confidence 76554444433333333222222221 12222221 24455566555556666655444444444 5
Q ss_pred cCCCCccc
Q psy12819 252 GNGRDHNV 259 (675)
Q Consensus 252 ~~p~~~~~ 259 (675)
++|+|.+|
T Consensus 202 ~~~~~~~k 209 (320)
T PF03845_consen 202 KDKKKLKK 209 (320)
T ss_pred CCchHHHH
Confidence 66666665
No 51
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.67 E-value=0.0046 Score=69.26 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=56.0
Q ss_pred CCCCCCCccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCC
Q psy12819 6 PQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTS 84 (675)
Q Consensus 6 p~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~ 84 (675)
|.+++.++.+++.+.++.....+.+++|+|++..|-. .+.+|-...++..++.+++......-+.|....+++ .
T Consensus 4 ~~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-----a 78 (471)
T PRK11387 4 PTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-----T 78 (471)
T ss_pred CCCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----C
Confidence 3344334567889999999999999999999988876 466774334555566666666666666665544322 2
Q ss_pred CCHHHHHHHHH
Q psy12819 85 MSFADIGEVAF 95 (675)
Q Consensus 85 ~sy~~l~~~~~ 95 (675)
..+-+-+++.+
T Consensus 79 GG~y~y~~~~~ 89 (471)
T PRK11387 79 GAFHVYAARYL 89 (471)
T ss_pred CCHHHHHHHhc
Confidence 34445555566
No 52
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.65 E-value=0.0061 Score=67.74 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=45.5
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHHH-HhcChh-hHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYAF-RNAGLT-GGIFLTVLVAVICTHCSYILVQCGHVLY 77 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~illi~~~~~~~~t~~lL~~~~~~~~ 77 (675)
+.+|+.+.++.+...+.+++|+|++..|... +..|-. ..++..++.++++........|....++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P 71 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYP 71 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3567789999999999999999999999864 445532 2444456666666666666666555443
No 53
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.63 E-value=0.0075 Score=72.59 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=121.5
Q ss_pred CCCCChHHHHHHH-HHhhhccccch-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 15 NNIGKDGETLTHL-LKASLGTGILS-MPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 15 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.++.++++.++.- +.+++|+|+.- +++...++|...+++..++.++++..+..-+.+.+.. ...+....|.-+.
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTn---g~p~aGG~Y~yis- 150 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATN---GVVKGGGAYYLIS- 150 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCccHHHHHHH-
Confidence 4466777777666 99999999965 5567779998878888888888888888777665432 0111223454443
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC----CCc-cHHHHHHHHHHHHHHhhcc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG----TEL-DIRVYISAFLIPLILLSWV 167 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~----~~~-~~~~~~~i~~~~~~pl~~~ 167 (675)
++| |+.....+.+...+.+...+..|.+..++.+..++..... ... +.+.+.++..+++..+ ..
T Consensus 151 ral----------Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I-n~ 219 (953)
T TIGR00930 151 RSL----------GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI-SF 219 (953)
T ss_pred HHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-HH
Confidence 344 5555666666666666666778887788887777653210 111 2233333322232222 23
Q ss_pred cCccccchhhhHHHHHHHHHhheeEEEEc---ccCCC----------CCCC--CCCCCC-CchhhHhHHHHhhhccceEe
Q psy12819 168 PNLKSLAPVSMVANLLMGTGLGITFYYIV---WDLHK----------PMEM--PQIADI-STMPTFFSIVIFAIEAIGVV 231 (675)
Q Consensus 168 ~~l~~L~~~S~~~~~~~~~~~~ii~~~~~---~~~~~----------~~~~--~~~~~~-~~~~~~~~i~~faf~~h~~i 231 (675)
...+..+++..+..+..+++++.++...+ .+.+. ..+. +.+.+. .++...++++.+||.|....
T Consensus 220 ~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444433322222111111 11000 0000 111111 22677778888899888777
Q ss_pred eeeccccccCCCchhhhhhhcCCCCc
Q psy12819 232 ISFRTATLLSRPVISRELMIGNGRDH 257 (675)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~M~~~p~~~ 257 (675)
..+-.| + |+|+|-
T Consensus 300 an~sgE------------l-KnP~r~ 312 (953)
T TIGR00930 300 ANISGD------------L-KDPQKA 312 (953)
T ss_pred HHHHHh------------c-cChhhh
Confidence 777777 8 999874
No 54
>PRK10249 phenylalanine transporter; Provisional
Probab=96.51 E-value=0.0062 Score=67.92 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=108.3
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
+.+++.+.++..+..+..++|+|++..|-. .+++|- ..++..++.+++....+.-+.|...+.+ ...+.-+.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P-----~~Gg~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEP-----VSGSFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHH
Confidence 345677889999999999999999999875 555675 3555566666666666666655544332 234566667
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK 171 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 171 (675)
++.+ |+...+++.....+.......+.....+..++... + +.....+..+...++. ....+..+
T Consensus 92 ~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~~~l~~-~lN~~gv~ 155 (458)
T PRK10249 92 YKYW----------GPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF----P-DVPTWIWAAAFFIIIN-AVNLVNVR 155 (458)
T ss_pred HHHh----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-cCcHHHHHHHHHHHHH-HHHHhcch
Confidence 7776 45555555555444332222222222222222221 1 2222222222222222 22333444
Q ss_pred ccchhhhHHHHH---HHHHhhee-EE--EEcccCC--CCCCCC-----CCCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819 172 SLAPVSMVANLL---MGTGLGIT-FY--YIVWDLH--KPMEMP-----QIADISTMPTFFSIVIFAIEAIGVVISFRTAT 238 (675)
Q Consensus 172 ~L~~~S~~~~~~---~~~~~~ii-~~--~~~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~ 238 (675)
..+.+.....+. .++.++++ +. ......+ +.+... ....+.++..++....|+|.|--.+...-.|
T Consensus 156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E- 234 (458)
T PRK10249 156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE- 234 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH-
Confidence 444433222111 11111110 00 0000001 111100 0123455678888899999999888888888
Q ss_pred ccCCCchhhhhhhcCCCCc-cc
Q psy12819 239 LLSRPVISRELMIGNGRDH-NV 259 (675)
Q Consensus 239 ~~~~~~~~~~~M~~~p~~~-~~ 259 (675)
+ |||+|- +|
T Consensus 235 -----------~-~~P~k~iPr 244 (458)
T PRK10249 235 -----------A-RDPEKSIPK 244 (458)
T ss_pred -----------h-cCHhhHHHH
Confidence 8 898874 44
No 55
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.48 E-value=0.0089 Score=66.69 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=61.7
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADI 90 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l 90 (675)
++.+++.+.++.....+.+++|+|++.+|.. .+.+|-. .++..++.+++....+..+.|...+.+. ....-+-
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~-----~Gg~y~y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPA-----ASSFSRY 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHH
Confidence 3456778999999999999999999999876 5566753 5666666666667666666665544321 2344445
Q ss_pred HHHHHhcCCcccccchhhhHHHHHHHHHHH
Q psy12819 91 GEVAFAKGPAWGRRYARFARICILLGLFLA 120 (675)
Q Consensus 91 ~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~ 120 (675)
+++.+ ||...+++.....+.
T Consensus 79 ~~~~~----------G~~~gf~~gw~~~~~ 98 (457)
T PRK10580 79 AQENL----------GPLAGYITGWTYCFE 98 (457)
T ss_pred HHHHc----------CcHHHHHHHHHHHHH
Confidence 56665 555566666555443
No 56
>PRK10836 lysine transporter; Provisional
Probab=96.48 E-value=0.011 Score=66.47 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVL 76 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~ 76 (675)
.+.+++.+.++.....+.++||+|++.+|. +.+++|-...++..++.++++...+.-+.|.....
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~ 76 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM 76 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345577899999999999999999999997 67777864456677777777777777676655544
No 57
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.35 E-value=0.0068 Score=65.27 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHhHhHhhhHHHHHhHh----cChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 432 PVTDGETLTHLLKASLGTGILSMPYAFRN----AGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~~----~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
+-|.+|..+.+..+.+|+|++.+|....+ .+|+. .++-.+.+....++...+.++ .|+ ++..+|.+..
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~-~ll~~~~~~~~~~~~~~l~~~--~p~-~~~~~~~~~~ 73 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWIS-IILGGLIIIFLLCLMIKIMSK--FPE-KNFSEILSKY 73 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHH-HHHHHHHHHHHHHHHHHHHHH--CCC-CCHHHHHHHH
Confidence 45788999999999999999999997544 55653 444455555556666666543 343 3455666655
No 58
>KOG3832|consensus
Probab=95.80 E-value=0.0094 Score=56.67 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=40.4
Q ss_pred HHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHH
Q psy12819 438 TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYI 483 (675)
Q Consensus 438 a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~l 483 (675)
...-++|-++|+|-|+||+||+..||+.++.+|.+.++++.-+.-.
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatf 62 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATF 62 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999999999998877644
No 59
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=95.76 E-value=0.037 Score=62.48 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=43.9
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChh-hHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLT-GGIFLTVLVAVICTHCSYILVQCGHVL 76 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~g~illi~~~~~~~~t~~lL~~~~~~~ 76 (675)
++.+++.+.++.+...+.+++|+|++..|.. .+++|-. ..++..++.+++....+..+.|.....
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~ 104 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI 104 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778999999999999999999999875 5556743 122334555666666666666655433
No 60
>PRK10655 potE putrescine transporter; Provisional
Probab=95.62 E-value=0.055 Score=59.98 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHH
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICT 478 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~ 478 (675)
+++-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~ 52 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSM 52 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHH
Confidence 4567899999999999999999999999988886 34555455444433
No 61
>PRK15049 L-asparagine permease; Provisional
Probab=95.57 E-value=0.029 Score=63.32 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=51.9
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.+++.+.++..+.-+.++||+|++..|. +.+++|- .+++..++.+++....+.-+.|.....+ ...+.-+-++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P-----~aGg~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRP-----SSGSFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHH
Confidence 3456788899999999999999998888 6777785 3555566666666666655655443322 2345556666
Q ss_pred HHH
Q psy12819 93 VAF 95 (675)
Q Consensus 93 ~~~ 95 (675)
+.+
T Consensus 100 ~~~ 102 (499)
T PRK15049 100 EFL 102 (499)
T ss_pred HHh
Confidence 666
No 62
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.36 E-value=0.15 Score=52.75 Aligned_cols=135 Identities=14% Similarity=0.171 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhhccccchHHHH---HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819 21 GETLTHLLKASLGTGILSMPYA---FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK 97 (675)
Q Consensus 21 ~~a~~~l~~~~iG~GiL~LP~a---f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 97 (675)
.+-.+-.+.+++|+|-=+==.. |..-|+. |....++.+.+-..+...+.+..++.+ ..+|+|+-++.+
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~-- 76 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVS-- 76 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHh--
Confidence 4455667779999997664443 3345665 666677777777777777777666543 579999999998
Q ss_pred CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819 98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS 177 (675)
Q Consensus 98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S 177 (675)
|++..++.|+.+.+..++.++.-+--.++.+++.++ ++.+.-.++....+..+-++++.+.+-.+.
T Consensus 77 --------~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~------lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 77 --------GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG------LPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 678888999999999999999999888888877764 344443344444445555666666655444
Q ss_pred h
Q psy12819 178 M 178 (675)
Q Consensus 178 ~ 178 (675)
.
T Consensus 143 ~ 143 (349)
T COG3949 143 G 143 (349)
T ss_pred e
Confidence 3
No 63
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=95.15 E-value=0.088 Score=58.95 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=38.8
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYIL 484 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL 484 (675)
.+|+.+.++...-.+.+.||+|++-.|. +++++|- ..++..++.+++......-+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~ 73 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAM 73 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999998765 8888887 33545555555444444333
No 64
>PRK11387 S-methylmethionine transporter; Provisional
Probab=95.13 E-value=0.12 Score=58.03 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=43.1
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcChhHHHHHHHHHHHHHH---HHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICT---HCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~v~g~i~l~~~a~l~~---y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
.+|+.+.++...--+.+++|+|++..|.. .+++|-...++..++.+++.. +|.-.|.. +.|...+...|.+..
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas--~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSV--AMPETGAFHVYAARY 88 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCHHHHHHHh
Confidence 34567899999999999999999877765 567774322333344443333 33333433 334333444554444
No 65
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=94.75 E-value=0.057 Score=60.02 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=97.3
Q ss_pred HHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcCCcccccch
Q psy12819 28 LKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYA 106 (675)
Q Consensus 28 ~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g~~~~~~~g 106 (675)
+.++||+|++..|- +.++.|- ..++..++.+++....+..+.|.....+ +....-+-+++.+ |
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P-----~~Gg~y~y~~~~~----------G 67 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATP-----DTGSFSTYADKAI----------G 67 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHc----------C
Confidence 46889999999998 6888885 3666666667766666666655544332 2345556666666 5
Q ss_pred hhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhhHHHHHH--
Q psy12819 107 RFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLM-- 184 (675)
Q Consensus 107 ~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~~~~~~~-- 184 (675)
|....++.....+.....+.......+..+ ..+.+ +.+...+..+...++. +......|..+.+..+.....
T Consensus 68 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~ 141 (446)
T PRK10197 68 RWAGYTIGWLYWWFWVLVIPLEANIAAMIL----HSWVP-GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVI 141 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc-cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHH
Confidence 555555555554433222221111111111 11211 2233232222222222 222333444433333322211
Q ss_pred -HHHhhee---EEEEcccCCCC-------CCCC-CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819 185 -GTGLGIT---FYYIVWDLHKP-------MEMP-QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIG 252 (675)
Q Consensus 185 -~~~~~ii---~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~ 252 (675)
++.+++. ......+..+. +... ....+.++..++....|+|.|--.+...-.| + |
T Consensus 142 ~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E------------~-k 208 (446)
T PRK10197 142 AILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAE------------S-D 208 (446)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHH------------h-c
Confidence 1111111 01100000000 0000 0112346778888999999999999888888 8 9
Q ss_pred CCCC-ccc
Q psy12819 253 NGRD-HNV 259 (675)
Q Consensus 253 ~p~~-~~~ 259 (675)
||+| .+|
T Consensus 209 nP~r~iPr 216 (446)
T PRK10197 209 TPEKHIVR 216 (446)
T ss_pred ChhhhHHH
Confidence 9987 445
No 66
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=94.70 E-value=0.096 Score=58.02 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=44.8
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChh--HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLT--GGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNS 502 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v--~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~ 502 (675)
++|+-+.++.....+.+++|+|++.+|...++.|-. .+-+...+.++....|.-.|.. +.|...+...|.+.
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s--~~P~~GG~y~y~~~ 76 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLAT--KNPQQGGPIAYAGE 76 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCCCChhHHHHH
Confidence 345678999999999999999999999999987752 2222222233333444444433 34443344445443
No 67
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=94.40 E-value=0.14 Score=56.91 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=48.0
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILGWR-NTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~-~~~~~~~~~~~~~~~~ 503 (675)
.+|+-+..+..+..+.+.+|+|++.+| .+.+++|-. +.+..++.+++.......+.+- .+.|...+..+|.+..
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 445678899999999999999999999 778898864 4555555555544433333332 2334444444554443
No 68
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=94.25 E-value=0.98 Score=49.36 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy12819 15 NNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLY 77 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~ 77 (675)
+++.|.+++.+..+.+.+|+| ++++|-|.+..| ..+++-+-+.+++..-+.+.-+-..+++.
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr 106 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYR 106 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 345899999999999999998 999999988888 44777777777776666666666566654
No 69
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=94.14 E-value=0.074 Score=59.22 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=108.7
Q ss_pred ccCCCCChHH-HHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 13 ESNNIGKDGE-TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 13 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
+.+++.+.++ .......+++|.|++.+|......+ ....+..++.+++....+....|...+.+ +...+-+-+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-----~~GG~y~~~ 82 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-----SAGGAYAYA 82 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCeeeeh
Confidence 3445556666 7888888999999999999988776 22222234444444444444544443221 223344445
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHH--HHHHHHHhhcccC
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISA--FLIPLILLSWVPN 169 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~ 169 (675)
++.+ ||...+.+.....+.......+.....++.+...++.......+...+..+ ....+.-+...+.
T Consensus 83 ~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G 152 (466)
T COG0531 83 KRAL----------GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRG 152 (466)
T ss_pred hhhc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhh
Confidence 5555 443345666666665555555555555555555444210000111122221 1222222233444
Q ss_pred ccccchhhhHHHHHHHHHhheeEEEE-cccCCC-CCCCC----CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCC
Q psy12819 170 LKSLAPVSMVANLLMGTGLGITFYYI-VWDLHK-PMEMP----QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRP 243 (675)
Q Consensus 170 l~~L~~~S~~~~~~~~~~~~ii~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~ 243 (675)
.+...+...+.....+...+++.... .....+ ..... .......+...+....++|.|-....+.-+|
T Consensus 153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E------ 226 (466)
T COG0531 153 IKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEE------ 226 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHH------
Confidence 55555544444333322222111110 000100 01111 1112234677788889999999888888888
Q ss_pred chhhhhhhcCCCCc-cc
Q psy12819 244 VISRELMIGNGRDH-NV 259 (675)
Q Consensus 244 ~~~~~~M~~~p~~~-~~ 259 (675)
+ |||+|. +|
T Consensus 227 ------~-knp~r~ip~ 236 (466)
T COG0531 227 ------V-KNPKRTIPR 236 (466)
T ss_pred ------h-cCccccccH
Confidence 8 998655 55
No 70
>KOG1286|consensus
Probab=93.95 E-value=0.21 Score=56.50 Aligned_cols=209 Identities=12% Similarity=0.052 Sum_probs=101.4
Q ss_pred CCCCChHHHHHHHHHhhhccccchH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTGILSM-PYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~GiL~L-P~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
++..+.+.-.+.=+.+++|+|++-. ..+.++.|=..-++-.++++..++.++.-+.|-..+.+.. ..++-.-+.
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~----aGs~~~ya~- 103 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS----AGSFYTYAY- 103 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc----cccceeeee-
Confidence 4455555555666889999998754 5567777765455555556666666666565544333210 112222222
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH--Hhhc-C-CCccHHHHHHH--HHHHHHHhhcc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI--NHYT-G-TELDIRVYISA--FLIPLILLSWV 167 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~--~~~~-~-~~~~~~~~~~i--~~~~~~pl~~~ 167 (675)
|..|+....++.....+...-.+.+-....+..++... +... . .+.+...|..+ ..++++.+.-.
T Consensus 104 ---------~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 104 ---------RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred ---------eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 22345555666666666655555555555555555543 0000 0 11222233322 22222333334
Q ss_pred cCccccchhhhHHHHHHHHHh---heeEEE-Ecc-cCCCCC------C-CCCCC-CCCchhhHhHHHHhhhccceEeeee
Q psy12819 168 PNLKSLAPVSMVANLLMGTGL---GITFYY-IVW-DLHKPM------E-MPQIA-DISTMPTFFSIVIFAIEAIGVVISF 234 (675)
Q Consensus 168 ~~l~~L~~~S~~~~~~~~~~~---~ii~~~-~~~-~~~~~~------~-~~~~~-~~~~~~~~~~i~~faf~~h~~i~~i 234 (675)
+-.-.....+...-+.+.+.+ .+++.. ... |..++. + ..... .++++...+-+..|+|.|--.+-..
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 433333433333322222222 222211 111 111111 1 01111 2677888999999999987777666
Q ss_pred ccc
Q psy12819 235 RTA 237 (675)
Q Consensus 235 ~~~ 237 (675)
-.|
T Consensus 255 a~E 257 (554)
T KOG1286|consen 255 AEE 257 (554)
T ss_pred HHh
Confidence 666
No 71
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.85 E-value=0.36 Score=53.46 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=116.9
Q ss_pred cCCCCChHHHHHHHHHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
-+++.....-.+.-+...||+|++ +.-.+.+++|-...++..++++.+.+..+.-|.|-+..++. ..+|..-+.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-----sGsF~~ya~ 116 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-----SGSFSTYAT 116 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhhhhh
Confidence 446667777778889999999985 77889999999988888999999999999999987776542 356887777
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc--ccCc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW--VPNL 170 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l 170 (675)
+-.+ | -....+...-.+...-++..-+...+. +++.+.+.+.+...|++++.++++.+.. .|..
T Consensus 117 rfvd--p--------a~GFa~gWnYw~~w~v~~~~El~aa~~----vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~f 182 (541)
T COG0833 117 RFVD--P--------AFGFALGWNYWLNWAVTLPLELTAASL----VIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGF 182 (541)
T ss_pred hhcC--c--------hHHHHHHHHHHHHHHHHhhHHHHHHHH----hhhhhcCCCCChHHHHHHHHHHHHHHHHhccccc
Confidence 7652 2 122222222222222221111222222 2333332335777888887776665554 4555
Q ss_pred cccc-hhhhHHHHHHHH--Hhhee-EEEEcccCCC-----CCC-CCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819 171 KSLA-PVSMVANLLMGT--GLGIT-FYYIVWDLHK-----PME-MPQIADISTMPTFFSIVIFAIEAIGVVISFRTA 237 (675)
Q Consensus 171 ~~L~-~~S~~~~~~~~~--~~~ii-~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 237 (675)
.+-- |+|.+=++.++. .+.++ +.....++.. +.+ ......+.++...+-+..|||.|.-.+--.-.|
T Consensus 183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE 259 (541)
T COG0833 183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE 259 (541)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence 5544 344443333221 11111 1211121111 111 112233456677777788999887776555555
No 72
>PRK15049 L-asparagine permease; Provisional
Probab=93.75 E-value=0.41 Score=54.00 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=47.0
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
+|+.+.++..+--+.++||+|++..|. +++++|= .+++..++.+++..-.+.-+.+ ....|...+...|.+..
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 455688899999999999999988776 7888885 3455555555544444444433 23345444555555544
No 73
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=93.66 E-value=1.5 Score=46.46 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=115.1
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHH----HHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC----THCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~----~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
+++.+..+.+=..++-|+|-+-=|-.-++-||+++.+.+++-+.+. -|...+.. -| .+.+|.+|+++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S-------vR--~~G~Si~~i~~ 121 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS-------VR--HKGKSIGEIAG 121 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh-------hc--CCCccHHHHHH
Confidence 5677788888899999999999999999999999988776654443 33322221 12 23579999999
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+.. ||++|.+..+...+.+.-...++....++.+...- ......++.+...+.+-+...|.=-+
T Consensus 122 ~~l----------G~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p------~~~~~~~~~I~~Ai~~G~~~y~~~~~ 185 (376)
T PF02554_consen 122 KYL----------GKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSP------WAATSSLLFIPIAILFGLLVYKRGGN 185 (376)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh------hHHHHHHHHHHHHHHHhHhheecCCc
Confidence 988 78899999999888888777777665555543311 11223344444444444445455555
Q ss_pred cchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819 173 LAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA 237 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 237 (675)
+...|.+++..++.++..-.+. |- +. .+ ....-.+++.|.....+.|+-.=
T Consensus 186 ~~~~t~i~vvll~~~v~~G~~~-----p~-~~------~~--~~~W~~ii~~Y~~iAs~lPVw~L 236 (376)
T PF02554_consen 186 LGPATIIGVVLLLLAVWLGMYF-----PI-SL------LS--VTTWIIIIFIYYFIASVLPVWKL 236 (376)
T ss_pred hHhhHHHHHHHHHHHHHhhhhc-----cc-cc------Cc--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778888877655444433221 10 00 01 12223356666666667777663
No 74
>PRK10836 lysine transporter; Provisional
Probab=93.23 E-value=0.52 Score=53.05 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYR 500 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~ 500 (675)
.+|+.+.++.....+.++||+|++.+|. +.+++|-...++..++.++++.-...-+.+ ..+.|...+...|.
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~ 86 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYG 86 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 3456788999999999999999999995 788888643455555556555544444433 22334433443443
No 75
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.02 E-value=0.27 Score=59.53 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHH-HHHhHhHhhh-HHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHh
Q psy12819 430 AHPVTDGETLTHL-LKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILG 485 (675)
Q Consensus 430 ~~~~s~~~a~~nl-~k~~iG~GiL-~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~ 485 (675)
.++-++++.++.- +..++|+|+. -+++...+.|...+.+..++.++++..+..-+.
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~s 132 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMS 132 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888777 8999999965 556667799977667777776666666665543
No 76
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=92.97 E-value=0.87 Score=51.14 Aligned_cols=117 Identities=11% Similarity=-0.019 Sum_probs=61.2
Q ss_pred CccCCCCChHHHHHHHHHhhhc--cccch-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLG--TGILS-MPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA 88 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~ 88 (675)
.+.+++.+.++.+.--+. .+| .|+.. .+.+.++.|-...+...++.+++....+..+.|.....+ +....-
T Consensus 8 ~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P-----~~Gg~y 81 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP-----TSGGQY 81 (482)
T ss_pred ceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCC-----CCccHH
Confidence 345566777766544443 454 55533 445677778654455666677776666666666544332 223444
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH
Q psy12819 89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140 (675)
Q Consensus 89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~ 140 (675)
+-+++++ |++ +|+...+++.....+.....+.+.....++.+..+.
T Consensus 82 ~~~~~~~--g~~----~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~ 127 (482)
T TIGR00907 82 FWSAKLA--PPR----QMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIV 127 (482)
T ss_pred HHHHHhc--ccc----cccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 333 355555565555555444444443334444444433
No 77
>PRK10238 aromatic amino acid transporter; Provisional
Probab=92.70 E-value=0.72 Score=51.42 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
.+|+-+.++..+--+.+.||+|++..|. +.+++|- ..++..++.+++..-...-+.+ ..+.|...++.+|.+..
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4456788899999999999999977765 5566664 3344444444444444443433 23445555555555544
No 78
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=92.54 E-value=0.75 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcCh
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGL 463 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~ 463 (675)
.+|+-+.++.+...+.+++|+|++.+|......|-
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~ 40 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG 40 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH
Confidence 44567899999999999999999999998888763
No 79
>PRK11021 putative transporter; Provisional
Probab=92.47 E-value=1.2 Score=48.81 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHhHhHhhhHHHHHhH-hcChhHHHHHHHHHH---HHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 434 TDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVA---VICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 434 s~~~a~~nl~k~~iG~GiL~LP~af~-~~G~v~g~i~l~~~a---~l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
+.+++....+.+++|+|++.+|.... +.|= ..++..++.+ ....+|.-.|..+ .|...+...|.+..
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~--~P~aGG~y~y~~~~ 72 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH--FPHAGGPAHFVGMA 72 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHhHHHH
Confidence 57889999999999999999987544 4452 2233333333 3334444444333 34334444555544
No 80
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=92.40 E-value=1.7 Score=45.99 Aligned_cols=145 Identities=13% Similarity=0.161 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHHhHhHhhhHHHHHhHhc---ChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819 433 VTDGETLTHLLKASLGTGILSMPYAFRNA---GLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR 509 (675)
Q Consensus 433 ~s~~~a~~nl~k~~iG~GiL~LP~af~~~---G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (675)
-|..|...-+..+.+|+|++.+|....+. ||+. .++-.+.+.+..|....+.++.++ ++..++.+..
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~------ 71 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKL------ 71 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHH------
Confidence 46789999999999999999999987555 6875 666666777777777666544332 3345555544
Q ss_pred hccceeeeeh--------HHHHHHHHHHHh---hhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q psy12819 510 FDLYSRFELS--------SKISIRISQVIN---HYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGL 578 (675)
Q Consensus 510 ~g~~~~~~~~--------i~~~~~l~~~~~---~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~ 578 (675)
+|++....+. ...+..++...+ ...-.+.+ ...+.....+..-..--+.++.++..+.+.....+...
T Consensus 72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP-~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~ 150 (320)
T PF03845_consen 72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETP-IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILL 150 (320)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2221111100 113333333332 21111112 22222222233344455778888887766666666666
Q ss_pred hheeeeeecc
Q psy12819 579 GITFYYIVYK 588 (675)
Q Consensus 579 ~~v~~~~~~~ 588 (675)
+.+......+
T Consensus 151 ~~i~~~~~~~ 160 (320)
T PF03845_consen 151 LLILLLSIPN 160 (320)
T ss_pred HHHHHHhccc
Confidence 6666544443
No 81
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=91.90 E-value=0.41 Score=54.03 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.6
Q ss_pred cCCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcCh
Q psy12819 428 KLAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGL 463 (675)
Q Consensus 428 ~~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~ 463 (675)
+.+|+-+.++...-.+.+++|+|++..|.. .+++|-
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~ 75 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGS 75 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCC
Confidence 345667889999888999999999888864 666774
No 82
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=91.49 E-value=0.95 Score=51.06 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVI 61 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~ 61 (675)
++++.+.++-+...+.+++|.+ .+|.++++.|.. +++..++.+.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~ 49 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAIL 49 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHH
Confidence 3567899999988899999976 568889988864 44444444433
No 83
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=90.90 E-value=1 Score=50.58 Aligned_cols=61 Identities=10% Similarity=-0.078 Sum_probs=36.3
Q ss_pred CccCCCCChHHHHHHHHHh-hhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819 12 TESNNIGKDGETLTHLLKA-SLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCG 73 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~-~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~ 73 (675)
.+-+|+.+.++.+..-++. .+|+|+.++|.. ..+.|- ..+...++.++.......-+.|..
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~ 71 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELA 71 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888887666665 488998888765 455664 234444444444444444444433
No 84
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=90.81 E-value=3.2 Score=47.52 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHh--HhcChh--HHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAF--RNAGLT--GGIFLTVLVAVICTHCSYILGWRN 488 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af--~~~G~v--~g~i~l~~~a~l~~y~~~lL~~~~ 488 (675)
+|+-+.++.+..-+.+++|+|+..+|... +..|-. .+.++-.+.+.+...|.-.+..+.
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~ 89 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARV 89 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45578999999999999999999999643 346632 233333333444455555554433
No 85
>PRK10249 phenylalanine transporter; Provisional
Probab=90.61 E-value=1.3 Score=49.33 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=44.1
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
+|+.+.++..+-.+.+.+|+|++.+|. +.+++|-. .++..++.+++......-+.+ ..+.|...+..+|.+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~ 94 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY 94 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345677888888999999999988775 55666752 444555555554444444433 22334444445555444
No 86
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=90.37 E-value=0.46 Score=53.27 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=43.8
Q ss_pred HHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819 28 LKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95 (675)
Q Consensus 28 ~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 95 (675)
+.+++|+|++ +.+.+..+.|.....+..++.+++...++.-+.|..++.++ ..++-+.+++.+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~l 70 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGL 70 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhcc
Confidence 4566777765 45668888998767777888888888888888887766542 245555555665
No 87
>PRK10580 proY putative proline-specific permease; Provisional
Probab=90.22 E-value=2.4 Score=47.24 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
.+|+-+.++..+..+.+.+|+|++.+|.. .+.+|-- ..+..++.+++.......+.+ ..+.|...+..+|.+..
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34557888999999999999999999765 5666752 344444444444444433332 12344444444454443
No 88
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=89.80 E-value=3.4 Score=46.22 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcC-h---hHHHHHHHHHHHHHHHHHHHHhhc
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAG-L---TGGIFLTVLVAVICTHCSYILGWR 487 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G-~---v~g~i~l~~~a~l~~y~~~lL~~~ 487 (675)
+|+-|.+++.+..+.+++|+|++.+|......| - +.+-++..+...+..++.-.|..+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~ 67 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK 67 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999876544 2 122222233333444555555433
No 89
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=89.04 E-value=2.2 Score=47.21 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHH---HHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAV---ICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~---l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
.+|+-|.++...--+.+.+|....+.+.+++.+|+..-.+..++.++ ...+|.-.|..+ .|...+...|.+..
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~--~P~~Gg~y~~~~~~ 80 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM--IPTAGGGYGFARRA 80 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Confidence 34556788887777788888445666889999998643334343333 334445555433 34333344444433
No 90
>TIGR00909 2A0306 amino acid transporter.
Probab=88.84 E-value=1.7 Score=47.80 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhH-hcChhHHHHHHHHHHHHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTH 479 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~-~~G~v~g~i~l~~~a~l~~y 479 (675)
|+.+.++.++-.+.+.+|+|++.+|.... .+|.. ..+..++.+++...
T Consensus 3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~ 51 (429)
T TIGR00909 3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALF 51 (429)
T ss_pred ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHH
Confidence 55788999999999999999999995544 44542 23444444444433
No 91
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=87.94 E-value=5.8 Score=43.48 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHhHhHh-hhHHHHHhHhcChhHHH----HHHHHHHHHHHHHHHHHhh
Q psy12819 432 PVTDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGI----FLTVLVAVICTHCSYILGW 486 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG~G-iL~LP~af~~~G~v~g~----i~l~~~a~l~~y~~~lL~~ 486 (675)
+.|.+++++..+.+.+|+| |++.|.|.+.+| +|- -...+.+..+.|.-.-|..
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG--pGAvFWMWI~allGm~~~~~e~~L~~ 103 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG--PGAVFWMWVTAFIGMATKFVESTLAQ 103 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998 999999999888 333 3334444455555544443
No 92
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=86.65 E-value=4.2 Score=45.44 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHhHhHhhhHHHHHhH-hcC
Q psy12819 432 PVTDGETLTHLLKASLGTGILSMPYAFR-NAG 462 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~-~~G 462 (675)
+-+.++.....+.+++|+|++.+|.... ..|
T Consensus 2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag 33 (468)
T TIGR03810 2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAA 33 (468)
T ss_pred CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhc
Confidence 4678899999999999999999988754 444
No 93
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=85.28 E-value=1.9 Score=47.95 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCCCChHH-HHHHHHHHhHhHhhhHHHHHhHhcC--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 430 AHPVTDGE-TLTHLLKASLGTGILSMPYAFRNAG--LTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 430 ~~~~s~~~-a~~nl~k~~iG~GiL~LP~af~~~G--~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
+++.+.++ ...-.....+|.|++.+|......+ ...+.+...++..+..++...+.+ +.|...+..+|.+..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~--~~p~~GG~y~~~~~~ 85 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSS--AIPSAGGAYAYAKRA 85 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeeehhhh
Confidence 34456666 6667788899999999999988775 222212222222233455555544 344444444555544
No 94
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=84.98 E-value=3.8 Score=45.94 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHH---HHHHHHHHHhhccCCC-CchhHhhHHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAV---ICTHCSYILGWRNTDP-LAESFTRYRNSI 503 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~---l~~y~~~lL~~~~~~~-~~~~~~~~~~~~ 503 (675)
|+.+.++.....+.+.+|+|++..| .+.+++|-..-++..++.++ ...+|.-.|.. ..| ...++..|.+..
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s--~~P~~gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMAT--FYPVVSGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCHHHHHHHH
Confidence 3467788888899999999998765 67778874322333444443 33344444433 333 233454454443
No 95
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=84.18 E-value=8.9 Score=42.54 Aligned_cols=115 Identities=7% Similarity=-0.011 Sum_probs=66.1
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHh--cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRN--AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~--~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
++|+.+.++-+..-....+....+.+-...-. .++..+++..++..++...-+-+.... ..|. ..++.-+.
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~----G~r~---Gl~~~v~s 82 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRA----GAKY---GLPFPVLS 82 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhh----HHHh---CCCcchhh
Confidence 44444554444444444444333333333222 344444444444433333333333222 2222 36888889
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG 145 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~ 145 (675)
|..| |++|..+..++..+...|=...-....++.+..+++...+
T Consensus 83 R~~F----------G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~ 126 (442)
T TIGR00800 83 RASF----------GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP 126 (442)
T ss_pred hhhh----------hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 9988 6778888888888888888888888888888888876543
No 96
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=83.90 E-value=6.2 Score=43.74 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=37.6
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHh-HhcC----hhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAF-RNAG----LTGGIFLTVLVAVICTHCSYILGWRN 488 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af-~~~G----~v~g~i~l~~~a~l~~y~~~lL~~~~ 488 (675)
.+|+-+.++.+.-.+.+.+|+|++..|... +..| .+.+.++-.+......+|.-.|..+.
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~ 70 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY 70 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999888999999999999763 4444 22223333333444455555554433
No 97
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=82.42 E-value=9.6 Score=42.49 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA 96 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 96 (675)
+++.+..+-+=..++-|+|-+-=|.--+|-||.+|.+-+++-..+.----..++- . .+ .|++..|-+|++++-+
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L-~--~S--vR~~G~Si~~ia~~~l- 124 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSL-M--LS--VRHGGKSIGEIAGKYL- 124 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhe-e--ee--eccCCccHHHHHHHHh-
Confidence 4677788888899999999999999999999999998876655443211111111 0 11 2334589999999988
Q ss_pred cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCcc-HHHHHHH--HHHHHHHhhcccCc-cc
Q psy12819 97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELD-IRVYISA--FLIPLILLSWVPNL-KS 172 (675)
Q Consensus 97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~-~~~~~~i--~~~~~~pl~~~~~l-~~ 172 (675)
|+..+.+..+...+...-...++...+.+. +.+ .++. ....+.+ ....-+ ..|.+ .+
T Consensus 125 ---------G~~a~~~~~~~~l~iliiv~Avfa~vv~~~----l~~---~p~~~f~v~~tipiA~~~G~---~~~~~rg~ 185 (575)
T COG1966 125 ---------GRTAKVFFLLLALILLILVGAVFAAVIAKL----LAN---SPWGVFTVFLTIPLAVLMGI---YLYRLRGN 185 (575)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh---CChhHHHHHHHHHHHHHHHH---HHHHhccc
Confidence 677888777776666554433333222222 111 1111 1111111 111112 23333 56
Q ss_pred cchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819 173 LAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRT 236 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~ 236 (675)
..-.|.++...++.++..--+.. -..+.+ +.+.-....-++.+.|.....+.|+-.
T Consensus 186 ~~~~siig~~ll~~ai~~g~~v~-------~~~~~~-~~~~~~~~w~ii~~~Y~fiAsvLPVW~ 241 (575)
T COG1966 186 MGISSVIGLALLILAIYLGSVVP-------IDAPIF-TGSLVILVWIIILFIYAFIASVLPVWL 241 (575)
T ss_pred ccccchHHHHHHHHHHHhccccc-------cccccc-cccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 77788888776655544332211 011111 233334445556655655666666655
No 98
>KOG1287|consensus
Probab=81.17 E-value=1.4 Score=48.47 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcC-hh-HHHHHHHHHHHHHHH---HHHHHhhccCCCC
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG-LT-GGIFLTVLVAVICTH---CSYILGWRNTDPL 492 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G-~v-~g~i~l~~~a~l~~y---~~~lL~~~~~~~~ 492 (675)
.+|+.+.+..+..++..++|+||...|.....-+ =+ .+.+.-+++|+++.- |.--|...-.+++
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG 78 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG 78 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4566788899999999999999999999876554 33 233334455555544 4444544444554
No 99
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=80.24 E-value=6.4 Score=43.18 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHH----HHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 434 TDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVA----VICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 434 s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a----~l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
|+++++...+.+.+|+|+...| +..+.|... .+..++.+ +...++...+.++ .|...+...|.+..
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~-~~~~~i~~~~~~l~~a~~~~el~~~--~p~~GG~y~~~~~~ 71 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPSA-ILAWIIAALLFFLPIALSYAELSSA--YPSAGGIYVWVSRA 71 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHH-HHHHHHHHHHHHHHHHHHHHHHHTT--TTSSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhcc--CCCcCeeeehhhhc
Confidence 5788889999999999999999 777777652 33222222 3444555455332 45444444555544
No 100
>PRK10746 putative transport protein YifK; Provisional
Probab=78.55 E-value=15 Score=40.94 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
|+-+..+..+--+.+.||+|++..| .+.+.+|- ...+..++.+++..-.+.-+.+ ....|...++.+|.+..
T Consensus 10 r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 10 RGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred ccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4567888888899999999988755 56777776 2344445555554444444433 23345555566666554
No 101
>PRK15015 carbon starvation protein A; Provisional
Probab=78.42 E-value=15 Score=42.07 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819 17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA 96 (675)
Q Consensus 17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 96 (675)
+++.+--+-|=..++-|+|-+-=|..-++-||+++.+-+++-..+.----....-. .+ .|.+.+|.+|++++-.
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~---~S--~R~~GrSig~ia~~~i- 155 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLF---VS--TRRDGRSLGELVKEEM- 155 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhee---ee--ecCCCccHHHHHHHHh-
Confidence 34555667788899999999999999999999999988776544332111111100 01 1234589999999988
Q ss_pred cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCcc-HHHHHHHHHHHHHHhhc-ccCccccc
Q psy12819 97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELD-IRVYISAFLIPLILLSW-VPNLKSLA 174 (675)
Q Consensus 97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~-~~~~~~i~~~~~~pl~~-~~~l~~L~ 174 (675)
|+.++.+..+.+.+.+.-...++-..+.+.+. + .++. ...++.+-..+++-..+ -++.....
T Consensus 156 ---------G~~~~~lfli~i~~iliiviAvfalvvv~al~----~---sP~~~fsv~~tIpiAl~mG~~l~~~r~g~v~ 219 (701)
T PRK15015 156 ---------GPTAGVIALVACFMIMVIILAVLAMIVVKALT----H---SPWGTYTVAFTIPLALFMGIYLRYLRPGRIG 219 (701)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h---CcHHHHHHHHHHHHHHHHHHHheeecCCchH
Confidence 77888887777777666555554444443331 1 1111 12222222222222222 23455566
Q ss_pred hhhhHHHHHHHHHhhee
Q psy12819 175 PVSMVANLLMGTGLGIT 191 (675)
Q Consensus 175 ~~S~~~~~~~~~~~~ii 191 (675)
..|.+|++.++.++..-
T Consensus 220 ~~SiiGvvll~~aI~~G 236 (701)
T PRK15015 220 EVSVIGLVFLIFAIISG 236 (701)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888665554443
No 102
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=77.59 E-value=13 Score=41.32 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 443 LKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 443 ~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
+.+.||+|++..|. +.++.|-. .++..++.+++.........+ ..+.|...+...|.+..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~ 65 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKA 65 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35789999998887 88899963 455555555555444444333 22344444555565554
No 103
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=75.24 E-value=9 Score=42.77 Aligned_cols=134 Identities=17% Similarity=0.309 Sum_probs=81.3
Q ss_pred HHHHHHHHHhHhHh-hhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHHHH-h---hhhh
Q psy12819 437 ETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSIHA-L---CVRF 510 (675)
Q Consensus 437 ~a~~nl~k~~iG~G-iL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~~~-~---~~~~ 510 (675)
.-.+--+-+.|||| .++.-.+++++|=..-++...+++.+.+..+.-|.+ .+.-|...++.+|+.+-.+ . ...+
T Consensus 50 Hl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gW 129 (541)
T COG0833 50 HLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGW 129 (541)
T ss_pred HHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHH
Confidence 34455567889999 578999999999998888888999988888888866 4455655668888777532 1 1111
Q ss_pred ccceeeeehHHHHHHH---HHHHhhhcCCCCcchhHHHHHHHHHHHhhcC--CCCCchh-HHHHHHHH
Q psy12819 511 DLYSRFELSSKISIRI---SQVINHYTGTELDIRVYISAFLIPLILLSWV--PNLKSLA-PVSMVANL 572 (675)
Q Consensus 511 g~~~~~~~~i~~~~~l---~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~i--r~l~~L~-~~S~~a~~ 572 (675)
-.|..+.+. ++-.+ ..+++.++....+...|+.+..++++.+.++ |-..+-- |+|.+=.+
T Consensus 130 nYw~~w~v~--~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 130 NYWLNWAVT--LPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred HHHHHHHHH--hhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 112222111 12111 1223334323357788888888877666654 4444333 34444333
No 104
>PRK11017 codB cytosine permease; Provisional
Probab=71.76 E-value=24 Score=38.55 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy12819 84 SMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLIL 163 (675)
Q Consensus 84 ~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~p 163 (675)
..++.-++|..| |++|.++..+...+...|=...-....++.++++.+ .+...+.+++.++..+
T Consensus 70 G~~~~v~sR~~F----------G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~------~~~~~~~~i~~~l~~~ 133 (404)
T PRK11017 70 GLSTHLLARFSF----------GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG------LDINLLIVLSGLLMTV 133 (404)
T ss_pred CcCHHHHHHHHh----------chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHH
Confidence 369999999999 556666666655555544322222223343333321 2333345555555555
Q ss_pred hhc--ccCccccchhhh
Q psy12819 164 LSW--VPNLKSLAPVSM 178 (675)
Q Consensus 164 l~~--~~~l~~L~~~S~ 178 (675)
.+. .|.++++..++.
T Consensus 134 ~~~~G~~~i~~~~~~~~ 150 (404)
T PRK11017 134 TAYFGISALTILSRIAV 150 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 554 344544444443
No 105
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=71.64 E-value=43 Score=36.50 Aligned_cols=152 Identities=11% Similarity=0.087 Sum_probs=83.0
Q ss_pred CCCChHHHHHHHHHhhhcc-ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
++.+++...+++..+.+|+ ..++.|-...+.|+. +....+..+........++.+-.+ +.+..|..|.-++-
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r------~~~~~T~~e~~~~R 78 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLR------RSGAVTIPEYLEKR 78 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHH------HTT--SHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhc------ccchhhhhhhhhhh
Confidence 5567788888888888876 467889988888976 333333333333333344433222 12357888888776
Q ss_pred HhcCCcccccchhhh--HHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 95 FAKGPAWGRRYARFA--RICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 95 ~~~g~~~~~~~g~~~--~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
| |+.. +.+..+...+.........+...+..++.+++ ++....+++..+++.......-++.
T Consensus 79 y----------g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g------i~~~~~~~i~~~i~~iYt~~GGl~a 142 (406)
T PF00474_consen 79 Y----------GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG------IPYNTAILIVGVIVIIYTFFGGLRA 142 (406)
T ss_dssp T-----------HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHTTCTT----
T ss_pred c----------CCchhhhhhcccccchhhhhhhhccccccccchhhccc------hhhhHHHHHHHHHHHHhhhhhhHhh
Confidence 6 5555 55555555555555555555555555555432 4566666666777777888888888
Q ss_pred cchhhhHHHHHHHHHhhe
Q psy12819 173 LAPVSMVANLLMGTGLGI 190 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~i 190 (675)
..+...+=.+.++++.++
T Consensus 143 v~~td~iQ~~i~~~~~~~ 160 (406)
T PF00474_consen 143 VAWTDFIQGVIMIIGAIV 160 (406)
T ss_dssp --SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 888887765544444333
No 106
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=71.38 E-value=49 Score=37.09 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCCChHHHHHHHHHhhhcc-ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++.+.+...+.+..+.+|+ ..++.|-...+.|+.. ................++..-..+..+| .+..|..|.-++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILARK--YNAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHH
Confidence 44556777778887777665 5677887666667642 1111110111111222222211112222 245899999887
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
-|+ ++..+.+..+...+..++...+-+...+..++.+++ ++....+++..+++...+...-++..
T Consensus 117 Ryg---------~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g------i~~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 117 RYQ---------SRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG------ISYETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred HhC---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 772 244566666655555555445555555666665542 45555555556666677788888888
Q ss_pred chhhhHHHHHHHH
Q psy12819 174 APVSMVANLLMGT 186 (675)
Q Consensus 174 ~~~S~~~~~~~~~ 186 (675)
.+...+=.+.++.
T Consensus 182 ~~TD~iQ~~i~~~ 194 (483)
T PRK09442 182 VLTDALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8777665444433
No 107
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=69.51 E-value=23 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy12819 84 SMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLIL 163 (675)
Q Consensus 84 ~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~p 163 (675)
..++.-+.|..| |++|.++..+...+...|--..-....++.++.+.+...+.+ +...++.+..++..+
T Consensus 57 Gl~~~v~sR~~F----------G~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~-~~~~~~~i~~~l~~~ 125 (386)
T TIGR02358 57 GLSAMGSLKLSL----------GSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE-SPMLWILIVGILVTL 125 (386)
T ss_pred CcCHHHHHHHHH----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 368999999999 566777777777777776666666677888888876543321 222334444444444
Q ss_pred hhcccCccccchhhhHHHHHHHH
Q psy12819 164 LSWVPNLKSLAPVSMVANLLMGT 186 (675)
Q Consensus 164 l~~~~~l~~L~~~S~~~~~~~~~ 186 (675)
.+.. ..+.++++..++...+..
T Consensus 126 ~~~~-G~~~i~~~~~~~~~~~~i 147 (386)
T TIGR02358 126 WLLS-GPLAFVWLNNWSVWLLLI 147 (386)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4432 345555555555554433
No 108
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=66.14 E-value=73 Score=35.57 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=21.2
Q ss_pred HHHhhhccceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819 220 IVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 220 i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
.+.|+|.|--.+...-+| + |||+| .+|
T Consensus 202 ~~~~af~G~e~~~~~a~E------------~-knP~r~iPr 229 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKD------------V-DNPDKNYPI 229 (474)
T ss_pred HHHHHHhchhHhHHHHHh------------c-cCcccchhH
Confidence 356899998888888888 8 99976 455
No 109
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=64.63 E-value=72 Score=35.60 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++.+.+...+++..+.+|++ .++.|-...+.|+.+...... .....+.....+.+-..+..+| .+..|..|.-++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRK--YNAITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHH
Confidence 356788888889988888765 456787777777642111110 0011111212221111111222 245788888887
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
-|+ +|..+.+..+...+.+++...+-+...+..++.+++ ++....+++..+++.......-++..
T Consensus 116 Ryg---------~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g------i~~~~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 116 RYN---------NKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG------LSYLTALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred HcC---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 662 244567777777776666555555555555555542 45555555666666677778888888
Q ss_pred chhhhHHHHHHHHH
Q psy12819 174 APVSMVANLLMGTG 187 (675)
Q Consensus 174 ~~~S~~~~~~~~~~ 187 (675)
.+...+=...++..
T Consensus 181 ~~td~iQ~~v~~~~ 194 (471)
T TIGR02119 181 ALTDAIQGIVMFTG 194 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777655544433
No 110
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=63.51 E-value=94 Score=35.01 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=96.7
Q ss_pred CCCChHHHHHHHHHhhhc-cccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLG-TGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
|+.+.+-..++...+.++ .-.+++|-...+.|+...-.... ..........++.+-..++.+ +++..|..|.-++=
T Consensus 38 R~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~--~~~~~T~~d~l~~R 114 (493)
T COG0591 38 RSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG-LLIGAFLLWLLFAPRLRRLAK--ARGATTIPDFLEAR 114 (493)
T ss_pred CcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--ccCCccHHHHHHHH
Confidence 334455677777778887 88999999999999763333222 212333333333332333332 23467888888776
Q ss_pred HhcCCcccccch-hhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 95 FAKGPAWGRRYA-RFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 95 ~~~g~~~~~~~g-~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
| | +..|.+..+...+..++-+..-+...+..++..++ .+...-+.+...++.....+--+++.
T Consensus 115 f----------~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g------i~~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 115 F----------GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG------ISYVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred c----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CCHHHHHHHHHHHHHHHHHHcChhHH
Confidence 6 5 78899999999999998888888888877755543 35555555556666777777778888
Q ss_pred chhhhHHH
Q psy12819 174 APVSMVAN 181 (675)
Q Consensus 174 ~~~S~~~~ 181 (675)
.+...+=-
T Consensus 179 ~~Td~iqg 186 (493)
T COG0591 179 VWTDFIQG 186 (493)
T ss_pred HHHHHHHH
Confidence 87776533
No 111
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=62.83 E-value=84 Score=35.12 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHhHh--Hhh-hHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 432 PVTDGETLTHLLKASLG--TGI-LSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG--~Gi-L~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
+-+.++.+ .+.-+.+| +|+ ...+.+.+++|-..-++..++.+++......-+.| ..+.|...+...|.+..
T Consensus 13 ~l~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 13 EFSLWSIF-GFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred ccchhHHH-HHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 34555443 33333454 554 34456787887654344444444444444433333 22344444444454443
No 112
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=62.41 E-value=7.7 Score=42.51 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q psy12819 106 ARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWV 167 (675)
Q Consensus 106 g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 167 (675)
|+.|..+..+++.+.|+-++++-....+|.++++.++ .+++.|..++.++-+.++..
T Consensus 272 G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-----isY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 272 GSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-----ISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998863 57888887766665555544
No 113
>KOG1286|consensus
Probab=61.29 E-value=18 Score=41.21 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHhHhHhh-hHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCc-hhHhhHHH
Q psy12819 434 TDGETLTHLLKASLGTGI-LSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLA-ESFTRYRN 501 (675)
Q Consensus 434 s~~~a~~nl~k~~iG~Gi-L~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~-~~~~~~~~ 501 (675)
+...-.+-=+-+.+|+|+ .....+.+++|=..-++..++.+..+..++..+.+ .++.|.. .++..|..
T Consensus 33 ~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 33 KTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred CcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeee
Confidence 333333334567789995 57788899988665445555555555555555543 3455542 34444433
No 114
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=59.18 E-value=12 Score=40.44 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q psy12819 87 FADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW 166 (675)
Q Consensus 87 y~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~ 166 (675)
..+++++.| |+.|+.+..+.+.+.|++++++.....+|.++++.++ .+.+.|.++..+..+.++.
T Consensus 257 l~~~a~~~~----------G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-----~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 257 LSAYSQHLF----------GSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-----LSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHH
Confidence 445666666 8999999999999999999999999988888887652 5777877776665554444
Q ss_pred ccCccccchhhh
Q psy12819 167 VPNLKSLAPVSM 178 (675)
Q Consensus 167 ~~~l~~L~~~S~ 178 (675)
. .++.+-.++.
T Consensus 322 ~-Gl~~Ii~~~~ 332 (378)
T TIGR00796 322 L-GLTQIISISI 332 (378)
T ss_pred h-CHHHHHHHHH
Confidence 3 4555554444
No 115
>KOG1289|consensus
Probab=58.80 E-value=53 Score=36.90 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=47.8
Q ss_pred CchhHHHHHHHHHHHHHHhheeeeeecccccccccccCc-ceeeccccCCCCCcccccccCCCCccchhhhhhhhccccc
Q psy12819 561 KSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDE-AVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLG 639 (675)
Q Consensus 561 ~~L~~~S~~a~~~i~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g 639 (675)
+.+++.+-++....++.+++.++-......+ ..|++. ..-+.+..|.++|.+ .-.+.+.+| -+.+.
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~--k~gFns~~~iF~~f~N~sgw~~----------~G~afil~f-~~~~w 263 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSK--KTGFNSGSFIFGKFNNYSGWKN----------NGWAFILGF-FNPAW 263 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCCCCCceeeecccccCCCCc----------chHHHHHhh-cccee
Confidence 4555555555555555555444422221111 113332 233334457888873 223333333 22344
Q ss_pred ccccccchh------hhccCc--ccchHHHHHHHHHHhhhcc
Q psy12819 640 TGILSMPYA------FRNAGL--TGGIFLTVLVAVICTHCSY 673 (675)
Q Consensus 640 ~~~~~~~~~------m~~~~~--~~~~~~~~~~~~~~~~~~~ 673 (675)
| +-....+ -|||++ =.|+..++.+|.+.-.|+.
T Consensus 264 t-~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~ 304 (550)
T KOG1289|consen 264 T-MSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIII 304 (550)
T ss_pred E-EeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHH
Confidence 4 3333222 567766 4577788888766555543
No 116
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=57.86 E-value=49 Score=37.44 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=23.9
Q ss_pred hhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819 215 PTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRD-HNV 259 (675)
Q Consensus 215 ~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~ 259 (675)
...+..++|+|.|--.....-+| + |||+| ++|
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E------------~-knP~r~~Pr 229 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINE------------L-ENPGRDYPL 229 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHH------------c-cCCcccccH
Confidence 33444568899998888888888 9 99976 555
No 117
>PRK11375 allantoin permease; Provisional
Probab=57.31 E-value=74 Score=35.75 Aligned_cols=49 Identities=12% Similarity=-0.061 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHH-HHHhccceeeeeeehhhHHHHHHh
Q psy12819 84 SMSFADIGEVAFAKGPAWGRRYARFARICILLGLF-LAYFGTCSVYTVIIAKNFSKVINH 142 (675)
Q Consensus 84 ~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~-~~~~g~~v~Y~i~i~~~l~~l~~~ 142 (675)
..++.-+.|..| |.+|.++..+... +..+|=...-....++.+..+++.
T Consensus 88 Gl~~~v~sR~sF----------G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 88 GVPFAMILRASY----------GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred CCChhHhHHHHH----------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999 4445555555542 233333333333455556655544
No 118
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=55.08 E-value=1.3e+02 Score=32.86 Aligned_cols=150 Identities=18% Similarity=0.122 Sum_probs=88.5
Q ss_pred CCCChHHHHHHHHHhhhcc-ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
|+.+.+...+++..+.+|+ ..++.|....+.|+. +....+..........++..+..+ |.+..|..|.-++-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI------NNGAYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HcCCCchhHHHHHH
Confidence 4556677777777766664 467788777777753 222222222222223333333211 22357888888876
Q ss_pred HhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccc
Q psy12819 95 FAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLA 174 (675)
Q Consensus 95 ~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~ 174 (675)
|+ +|..|.+..+...+..+....+.+...+..++.+++ ++....+++...++.......-++...
T Consensus 76 yg---------~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g------i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 76 FG---------KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG------LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred hC---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 62 235777777777777777666667666776666543 444555555555666677777888877
Q ss_pred hhhhHHHHHHHHH
Q psy12819 175 PVSMVANLLMGTG 187 (675)
Q Consensus 175 ~~S~~~~~~~~~~ 187 (675)
+...+=.+.++.+
T Consensus 141 ~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 141 WTDTIQAVIMILG 153 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 7777665544433
No 119
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=54.52 E-value=29 Score=37.61 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhh
Q psy12819 106 ARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSM 178 (675)
Q Consensus 106 g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~ 178 (675)
|+.|+.+..+++.+.|+-++++-+...+|.++++.++ ++++.|..++.++-+..+... ++++-..|.
T Consensus 274 G~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-----~SY~~~v~if~i~sflvan~G-L~~Ii~isv 340 (431)
T COG1114 274 GSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-----LSYKTWVIIFTLISFLVANLG-LEQIIKISV 340 (431)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 8899999999999999999999999999999998874 567777766665555444432 444444443
No 120
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=51.94 E-value=1.6e+02 Score=32.29 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCccCCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Q psy12819 11 KTESNNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSY 67 (675)
Q Consensus 11 ~~~~~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~ 67 (675)
+++++++-|.+|+...-+.+.+|+| +-+..-|..-.|- .+++.+-+++++..-+-+
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~ 68 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKY 68 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHH
Confidence 3556678999999999999999999 4567777877774 366666666665544333
No 121
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=50.00 E-value=2.1e+02 Score=30.74 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=41.8
Q ss_pred cCCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHH----HHHHHHHHHHHH
Q psy12819 428 KLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVL----VAVICTHCSYIL 484 (675)
Q Consensus 428 ~~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~----~a~l~~y~~~lL 484 (675)
...-+++.+.-+-|=+.++-|+|=+-=|-.=..-||+++.+=+++ .+..=.|.....
T Consensus 47 vDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~ 107 (376)
T PF02554_consen 47 VDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA 107 (376)
T ss_pred CCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh
Confidence 344567788899999999999997777777799999997765543 444555555444
No 122
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=48.22 E-value=2.4e+02 Score=31.39 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHH-hHhHhhhHHHH-HhHhcCh
Q psy12819 431 HPVTDGETLTHLLKA-SLGTGILSMPY-AFRNAGL 463 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~-~iG~GiL~LP~-af~~~G~ 463 (675)
|+-|.++.+..-+.. .+|+|+.+++. +..++|=
T Consensus 13 R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp 47 (475)
T TIGR03428 13 RKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP 47 (475)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 445677776655555 48888877664 4556665
No 123
>PRK12488 acetate permease; Provisional
Probab=47.98 E-value=1.9e+02 Score=33.02 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=86.9
Q ss_pred CCCCChHHHHHHHHHhhhcccc-chHHHHHHhcChhhHHHHHHHHHHHHHHH-HHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTGI-LSMPYAFRNAGLTGGIFLTVLVAVICTHC-SYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~illi~~~~~~~~t-~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.++.+++...+.+..+.++++. ++.|-...+.|+- +.... ....+.+.- ..++. .+.. | ....|..|.-+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a---~~lr-~--~g~~T~~d~l~ 137 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIA---ERLR-N--LGKYTFADVVS 137 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHH---HHHH-H--CCCcchHHHHH
Confidence 3566777888888888777664 7899888888864 22211 111111111 11222 2221 1 22467878776
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+=|+ +|..|.+..+...+..+.-...-+...+..++.++ +++...-+++..+++...+...-++.
T Consensus 138 ~Rf~---------s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~------gi~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 138 YRLA---------QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF------GISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHcC---------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHhccchhH
Confidence 6552 35577777776666655544444444555555553 24555555556666666777888888
Q ss_pred cchhhhHHHHHHHHHhh
Q psy12819 173 LAPVSMVANLLMGTGLG 189 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~ 189 (675)
..+...+=.+.++.+.+
T Consensus 203 v~~td~iQ~~im~~~~i 219 (549)
T PRK12488 203 TTWVQIIKAVLLLSGTS 219 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877775554444333
No 124
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=46.58 E-value=75 Score=34.85 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHhHhHh-hhHHHHHhHhcChhHHHH---HHHHHHHHHHHHHHHHhh
Q psy12819 429 LAHPVTDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIF---LTVLVAVICTHCSYILGW 486 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~G-iL~LP~af~~~G~v~g~i---~l~~~a~l~~y~~~lL~~ 486 (675)
.++..|.+|++..-+.+.+|+| |-+.+.|.+-+|=-. +. +.-+.+..+-|.--.|.+
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGA-vFWMWi~Al~Gmat~f~E~~La~ 119 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGA-VFWMWIVALFGMATKFAESTLAQ 119 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCcc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445789999999999999999 899999999998221 22 223344455566566643
No 125
>PRK11375 allantoin permease; Provisional
Probab=45.57 E-value=1.6e+02 Score=33.08 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhheeeeeecc
Q psy12819 546 AFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYK 588 (675)
Q Consensus 546 i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~~~~~~ 588 (675)
+..++.++..+ +..+.+.+++.++...++..++.+.++.+.+
T Consensus 164 i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~ 205 (484)
T PRK11375 164 IFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISL 205 (484)
T ss_pred HHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567765 5577777777777777666555555444443
No 126
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=44.30 E-value=51 Score=36.34 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=47.0
Q ss_pred ccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc--ccCccccchhhhHH
Q psy12819 103 RRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW--VPNLKSLAPVSMVA 180 (675)
Q Consensus 103 ~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~L~~~S~~~ 180 (675)
..+|++|.++..+...+.+.|-...-.+..++.... ..+.+...++++..+++...+. .|-++.+..++..-
T Consensus 89 ~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~------~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~ 162 (442)
T COG1457 89 YPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS------GTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPL 162 (442)
T ss_pred ccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc------CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344889999999999999999888877777776111 1245666666666655555554 34455555444443
Q ss_pred H
Q psy12819 181 N 181 (675)
Q Consensus 181 ~ 181 (675)
.
T Consensus 163 ~ 163 (442)
T COG1457 163 L 163 (442)
T ss_pred H
Confidence 3
No 127
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=42.12 E-value=1.4e+02 Score=33.31 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=36.0
Q ss_pred HHHhHhHh-hhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 443 LKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 443 ~k~~iG~G-iL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
+-+.+|+| .++.+.+..++|....++..++.+++...++.-+.+ .++.|...++..|.+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~ 69 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRG 69 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhc
Confidence 34568888 456777999999876666666666655555554433 22233334444554443
No 128
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=41.49 E-value=2.1e+02 Score=31.67 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHhHhHh-hhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHhhHHHHH
Q psy12819 433 VTDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWR-NTDPLAESFTRYRNSI 503 (675)
Q Consensus 433 ~s~~~a~~nl~k~~iG~G-iL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~-~~~~~~~~~~~~~~~~ 503 (675)
.+.-+--+-=+-+.||+| .|+-..+.+..|=-. ++...++|++...-++.|.+. ..+|..+++.+|.+..
T Consensus 15 L~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~ 86 (462)
T COG1113 15 LKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY 86 (462)
T ss_pred hHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 344455555677889999 577788888888554 555677888888888888763 3446667888887776
No 129
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=40.57 E-value=3.9e+02 Score=29.90 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=77.5
Q ss_pred CCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++.+++...+.+..+.+++. .++.|-...+.|+.. ........+........+.+-.++..+ .|.+..|-.|.-++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHHHH
Confidence 455677888888888877654 567887767778742 222221122222233334332222221 02335677777776
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
=||+. .|..+.+..+...+........-+...+..++.++ +++....+++..++....+...-++..
T Consensus 113 Ryg~~-------~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~------gi~~~~~iii~~~i~~~Yt~~GGl~av 179 (487)
T TIGR02121 113 RFNDK-------SRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF------GLDYKTGLLIGALIIVIYTFFGGFLAV 179 (487)
T ss_pred HhCCC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 66311 12334344443333332222222333344444443 244444455555566666677777777
Q ss_pred chhhhHHHHHH
Q psy12819 174 APVSMVANLLM 184 (675)
Q Consensus 174 ~~~S~~~~~~~ 184 (675)
.+...+=.+.+
T Consensus 180 ~~TD~iQ~~i~ 190 (487)
T TIGR02121 180 SWTDFVQGLLM 190 (487)
T ss_pred HHHHHHHHHHH
Confidence 77666544433
No 130
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=37.86 E-value=71 Score=24.03 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 467 IFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 467 ~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
.+.++++-++--|-.|+ -+.++.+.+.|+.|++++
T Consensus 6 ~~ti~lvv~LYgY~yhL--Yrsek~G~rdYEKY~~LA 40 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHL--YRSQKKGERDYEKYANLA 40 (56)
T ss_pred HHHHHHHHHHHHHHHHh--hhhhcccccCHHHHhhhh
Confidence 34444555555666666 466777778999999988
No 131
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=37.57 E-value=2e+02 Score=27.20 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=24.4
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhheeeeeec
Q psy12819 556 WVPNLKSLAPVSMVANLLMGTGLGITFYYIVY 587 (675)
Q Consensus 556 ~ir~l~~L~~~S~~a~~~i~~~~~~v~~~~~~ 587 (675)
.+|.+.++.+-.++..+|+.+.-.+-+-|++.
T Consensus 122 ~~~~~~~l~~nTiiT~~CiyiLyGlFIGYSIs 153 (173)
T PF11085_consen 122 MIKPVTELDWNTIITTLCIYILYGLFIGYSIS 153 (173)
T ss_pred CChhhhhCchhHHHHHHHHHHHHHHHhceeeh
Confidence 56788888888888888887766666666654
No 132
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=37.33 E-value=58 Score=35.95 Aligned_cols=114 Identities=9% Similarity=-0.026 Sum_probs=62.5
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNA--GLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG 91 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~--G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 91 (675)
++|+.+..+-+..-....+....+.+-...... ++.-+++.+++..++...-.-+... ...|+ ..++..++
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~----~G~r~---Gl~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGI----IGPRT---GLPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTH----HHHCC------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcc----ccccc---CCCchhcc
Confidence 445556666665555555555555544443233 3444444444444333322222222 33333 35777888
Q ss_pred HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhc
Q psy12819 92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYT 144 (675)
Q Consensus 92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~ 144 (675)
|..| |.+|..+..+...+...|-...-..+.++.+..+.+...
T Consensus 78 R~~F----------G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 78 RASF----------GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp TTTS-----------TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhcc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 8777 677888888888888887777777778888888887653
No 133
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=37.20 E-value=4.7e+02 Score=28.73 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHHhHhHh-hhHHHHHhHhcC
Q psy12819 430 AHPVTDGETLTHLLKASLGTG-ILSMPYAFRNAG 462 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~G-iL~LP~af~~~G 462 (675)
+++.|-+||+..-+.+.+|+| |.+...|...+|
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG 49 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGG 49 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc
Confidence 345789999999999999999 999999999988
No 134
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=33.02 E-value=1.9e+02 Score=32.75 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=38.2
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVA 474 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a 474 (675)
..-+++.+..+-|=+-++-|+|=+-=|--=++-||++|.+=+++=+
T Consensus 48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~ 93 (575)
T COG1966 48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGC 93 (575)
T ss_pred ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhh
Confidence 3446778888889999999999999999999999999887665533
No 135
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.73 E-value=2.3e+02 Score=24.81 Aligned_cols=54 Identities=11% Similarity=-0.077 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHH-HHHh
Q psy12819 432 PVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCS-YILG 485 (675)
Q Consensus 432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~-~lL~ 485 (675)
+.|.-.-..-..-+...-=++++|.+...++|.....++++..++..... ..|.
T Consensus 17 GlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~ 71 (111)
T TIGR03750 17 GLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLA 71 (111)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33433333333333333357889988888899988777766665555544 4453
No 136
>PRK09395 actP acetate permease; Provisional
Probab=32.35 E-value=4.2e+02 Score=30.27 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=77.5
Q ss_pred CCCCChHHHHHHHHHhhhcc-ccchHHHHHHhcChhhHHHHHHHHHHHHH-HHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICT-HCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~illi~~~~~~~-~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.++.+++...+.+..+.+++ ..++.|-...+.|+. +....+ ...+.. ....++. .+.. +.+..++.|.-+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~-~~~~g~~~~~~~~~---~~~r---~~g~~T~~d~l~ 139 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSI-GFLVGWPIILFLIA---ERLR---NLGKYTFADVAS 139 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHH-HHHHHHHHHHHHHH---HHHh---hCCCccHHHHHH
Confidence 34556666777777777764 457888777777864 222111 111111 1112222 2221 223478888777
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+=|+ +|..|.+..+...+..+....+-+.-.+..++.++ +++...-+++..+++...+...-++.
T Consensus 140 ~Ryg---------s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~------gi~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 140 YRLK---------QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF------GLNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHcC---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 6552 24567776665555443333333333344444443 24555555555666666667777777
Q ss_pred cchhhhHHHHHHH
Q psy12819 173 LAPVSMVANLLMG 185 (675)
Q Consensus 173 L~~~S~~~~~~~~ 185 (675)
..+...+=.+.++
T Consensus 205 v~~TD~iQ~iim~ 217 (551)
T PRK09395 205 TTWVQIIKAVLLL 217 (551)
T ss_pred HHHHHHHHHHHHH
Confidence 7666665444333
No 137
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=31.73 E-value=5.8e+02 Score=28.70 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=77.8
Q ss_pred CCCCChHHHHHHHHHhhhcccc-chHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTGI-LSMPYAFRNAGLTGGIFLTVLVAVIC-THCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~illi~~~~~~-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.++.+++...+++..+.+++.. ++.|-...+.|+-. .. ..+...+. .....++..-.+.... .+.+..|..|.-+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~-~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SW-IAIGLTLGAWINWKLVAGRLRVHTE-YNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCceeHHHHHH
Confidence 4566777788888877776654 56888878888642 11 11111111 1111222111111111 1223467777766
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+=|+.. .|..+.+..+.+.+....-+.+-+...+..++.++ +++....+++..+++...+...-++.
T Consensus 116 ~Ry~~~-------~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~------gi~~~~~iii~~~iv~iYt~~GGl~a 182 (502)
T PRK15419 116 GRFEDK-------SRILRIISALVILLFFTIYCASGIVAGARLFESTF------GMSYETALWAGAAATILYTFIGGFLA 182 (502)
T ss_pred HHhCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 655211 13344444444444433322222333344444433 24555555666667777778888888
Q ss_pred cchhhhHHHHHH
Q psy12819 173 LAPVSMVANLLM 184 (675)
Q Consensus 173 L~~~S~~~~~~~ 184 (675)
..+...+=.+.+
T Consensus 183 V~~TD~iQ~~im 194 (502)
T PRK15419 183 VSWTDTVQASLM 194 (502)
T ss_pred HHHHHHHHHHHH
Confidence 887776654433
No 138
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=31.23 E-value=4.6e+02 Score=29.96 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=77.6
Q ss_pred CCCCChHHHHHHHHHhhhc-cccchHHHHHHhcChhhHHHHHHHHHHHHH-HHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLG-TGILSMPYAFRNAGLTGGIFLTVLVAVICT-HCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~illi~~~~~~~-~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
.++...+...+.+..+.++ ...++.|-...+.|+- +....+ ...+.+ ....++.+ +. +| ....+..|.-+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~---~l-rr--~g~~T~~d~l~ 137 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAE---RL-RN--LGRYTFADVAS 137 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHH---HH-HH--cCCccHHHHHH
Confidence 3455566666677777665 5678899877777864 322221 111111 11222222 22 12 22478888776
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+=|+ +|..|.+..+...+.+..-....+.-.+..++.+++ ++...-+++...++...+...-++.
T Consensus 138 ~Rf~---------s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 138 YRLK---------QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG------LNYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHcC---------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5442 355677666665555444334444444444444432 3444445555556666666777777
Q ss_pred cchhhhHHHHHH
Q psy12819 173 LAPVSMVANLLM 184 (675)
Q Consensus 173 L~~~S~~~~~~~ 184 (675)
..+...+=.+.+
T Consensus 203 v~~td~iQ~~im 214 (549)
T TIGR02711 203 TTWVQIIKAVLL 214 (549)
T ss_pred HHHHHHHHHHHH
Confidence 666666544333
No 139
>PRK15015 carbon starvation protein A; Provisional
Probab=30.29 E-value=2.2e+02 Score=32.96 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHH
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVL 472 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~ 472 (675)
.+++-+--+=|=+.++-|+|=+-=|.-=.+-||++|.+=+++
T Consensus 81 vPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~ 122 (701)
T PRK15015 81 VPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLA 122 (701)
T ss_pred CcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHH
Confidence 344445566678899999998888888889999998776554
No 140
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=29.52 E-value=5.2e+02 Score=29.52 Aligned_cols=150 Identities=9% Similarity=0.029 Sum_probs=79.5
Q ss_pred CCCCChHHHHHHHHHhhhcc-ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++.+++...+.+..+.+++ ..++.|-...+.|+- +.....-..........++.+-.+ | .+..|-.|.-++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~r----r--~~~~T~~e~l~~ 103 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLR----K--FGKYTVPDFIGD 103 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHH----H--CCCccHHHHHHH
Confidence 45677888888888888865 567888777777763 211111111111112233333222 2 234566666555
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
=|+ +|..|.+..+...+..+.....-+...+..++.+.+ ++...-+++..++....+...-++..
T Consensus 104 Rf~---------s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g------i~~~~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 104 RYY---------SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE------VDFETGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred HhC---------CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 552 244466655555554444333333344444444432 45555555555666666777777777
Q ss_pred chhhhHHHHHHHH
Q psy12819 174 APVSMVANLLMGT 186 (675)
Q Consensus 174 ~~~S~~~~~~~~~ 186 (675)
.+.-.+=.+.++.
T Consensus 169 ~~TD~iQ~iim~i 181 (552)
T TIGR03648 169 TWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 7777665443433
No 141
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=28.97 E-value=4.5e+02 Score=24.00 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=35.8
Q ss_pred hhHHHHHHhhhhhhhhheeeccccccccccchhhhhhcccCCCCCCCccccccCCCCCChHHHHHHHHHHhHhHhh
Q psy12819 376 SMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGI 451 (675)
Q Consensus 376 g~~~~~~l~filP~~fy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~nl~k~~iG~Gi 451 (675)
+.+-+..+++.+...+.+..||....|++.++-|.++.+. +..-..+-|+|.-..-..-+.++.|+
T Consensus 40 aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAG----------e~GfFsP~SwWPl~la~~~al~~lGl 105 (137)
T PF12270_consen 40 ALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAG----------ELGFFSPHSWWPLVLAAAAALVFLGL 105 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCC----------CcCcCCCccHhHHHHHHHHHHHHHHH
Confidence 5555667777888777777777666666543333222111 01123456888865444444444443
No 142
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.11 E-value=2.9e+02 Score=24.63 Aligned_cols=58 Identities=14% Similarity=-0.060 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChh-HHHHHHHHHHHHHHHHHHHHhhccC
Q psy12819 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLT-GGIFLTVLVAVICTHCSYILGWRNT 489 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v-~g~i~l~~~a~l~~y~~~lL~~~~~ 489 (675)
++.|.-.-..-..-+.+-.-++++|.|+- .||+ .++.++++..++..+-.--++++.+
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlK 77 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLK 77 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444443333333334446899999998 5555 6777777766666665555444433
No 143
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=26.13 E-value=3.2e+02 Score=30.13 Aligned_cols=54 Identities=7% Similarity=0.002 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCCC--Cc------chhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q psy12819 521 KISIRISQVINHYTGTE--LD------IRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLM 574 (675)
Q Consensus 521 ~~~~~l~~~~~~~~~~~--~~------~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i 574 (675)
..++.++++++...+.. .+ .....++...+.+++..+.-.+-.......+....
T Consensus 112 ~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~~~ 173 (442)
T TIGR00800 112 VGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVVPP 173 (442)
T ss_pred HhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 35677777766543221 11 12222344444556555554444444444444333
No 144
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=25.28 E-value=5.6e+02 Score=28.80 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=82.8
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHH----HHhc---C--------hhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYA----FRNA---G--------LTGGIFLTVLVAVICTHCSYILVQCGHVL 76 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a----f~~~---G--------~~~g~illi~~~~~~~~t~~lL~~~~~~~ 76 (675)
+|++.+-|.++-...++.+-+|+|++--..+ ..+. | .-.+.....+-+.+..|+.+.+.-..-.+
T Consensus 69 ~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 69 DDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAY 148 (485)
T ss_dssp TSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhe
Confidence 3445567888888999999999999865321 1111 1 12355555666666666666554433222
Q ss_pred hhhcCCCCCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHH--H
Q psy12819 77 YRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVY--I 154 (675)
Q Consensus 77 ~~~~~~~~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~--~ 154 (675)
-...+++..+..+..+-.+|+ |..|+. ..++|+...+...+....-+-+....+..-++...+.+-+.... +
T Consensus 149 ~~y~k~~~~~~ss~l~pl~g~-----~~~g~~-g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~i 222 (485)
T PF02028_consen 149 FFYNKGKPLRISSALYPLLGD-----RINGPL-GKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIII 222 (485)
T ss_dssp HHHTS---SSGGGGCHHHHHH-----HHHSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHH
T ss_pred eeeecCCCCchhhhhhhhcCC-----cccCcc-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 111122234444444444421 122444 45667776666666555555555566666666655443333222 2
Q ss_pred HHHHHHHHHhhcccCccc-cchhhhHHHH
Q psy12819 155 SAFLIPLILLSWVPNLKS-LAPVSMVANL 182 (675)
Q Consensus 155 ~i~~~~~~pl~~~~~l~~-L~~~S~~~~~ 182 (675)
++....++-.+...-+++ .+++|-+.+.
T Consensus 223 i~~~~~i~~~S~~~Gl~kGIk~LS~~n~~ 251 (485)
T PF02028_consen 223 IIVITVIFTISAVSGLDKGIKRLSNINVY 251 (485)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 223334444555555533 5555544443
No 145
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=23.86 E-value=96 Score=34.22 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=50.6
Q ss_pred cchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819 104 RYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS 177 (675)
Q Consensus 104 ~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S 177 (675)
.+|++++.+..+.+.+.|+-++++-....+|.+++.++ .+++.|..+..++.++++... ++.+-..+
T Consensus 274 ~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~------isY~~~v~i~~l~S~~lSn~G-~~~II~~s 340 (439)
T PRK15433 274 TFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP------LSYRTLVFILGGFSMVVSNLG-LSQLIQIS 340 (439)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 44899999999999999999999999988888888753 567777777776666666653 33333333
No 146
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.77 E-value=1.2e+02 Score=25.26 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCCCccccccCCCCCChHHHHHHHHHHhHhHhhhH
Q psy12819 419 DYWDPFKERKLAHPVTDGETLTHLLKASLGTGILS 453 (675)
Q Consensus 419 ~~~~~~~~~~~~~~~s~~~a~~nl~k~~iG~GiL~ 453 (675)
+.++|.-+.--+.+++-..+..--+.+.+|+||.+
T Consensus 47 p~YePWF~Pl~EPpSGEIESLLFslQaaiGa~IIg 81 (97)
T COG1930 47 PGYEPWFQPLWEPPSGEIESLLFSLQAAIGAGIIG 81 (97)
T ss_pred CCCCcccccccCCCCccHHHHHHHHHHHhcceeee
Confidence 33555433333456777888888899999999864
No 147
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=23.37 E-value=1e+03 Score=26.31 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=37.8
Q ss_pred ccCCCCChHHHHHHHHHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCS 66 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~ 66 (675)
+++++-|.+|+...-+.+.+|+|=+ +..-|.+-.|- .+++.+=+.|++..-|.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~ 111 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATK 111 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHH
Confidence 5667789999999999999999954 56777777663 35665555555544333
No 148
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=22.90 E-value=2.9e+02 Score=29.97 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=75.4
Q ss_pred CCCChHHHHHHHHHHhHhH-hhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhh-----HHHHH-
Q psy12819 431 HPVTDGETLTHLLKASLGT-GILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTR-----YRNSI- 503 (675)
Q Consensus 431 ~~~s~~~a~~nl~k~~iG~-GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~-----~~~~~- 503 (675)
|+.+++...+.+..+.+|+ .+++.|-..-+.|+.. ...-+.......-....+.+|.|+.+..+..| |++..
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~ 84 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKAL 84 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchh
Confidence 3467888888888888887 4889998888888864 33323323322233333344444443333222 33333
Q ss_pred HHhhhhhccceeee-ehHHHHHH---HHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q psy12819 504 HALCVRFDLYSRFE-LSSKISIR---ISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLG 579 (675)
Q Consensus 504 ~~~~~~~g~~~~~~-~~i~~~~~---l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~ 579 (675)
... .+...... .....+.. ...+++...+ ++...-+++..++.+..+..--++...++..+=.+.++++.+
T Consensus 85 ~~~---~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~ 159 (406)
T PF00474_consen 85 LRI---LAAIIIIVFMIPYLAAQLVGGGALLSVLFG--IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAI 159 (406)
T ss_dssp HHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHH
T ss_pred hhh---hcccccchhhhhhhhccccccccchhhccc--hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHH
Confidence 111 11000000 00001111 1222333333 344555556666667788999999999999999998888888
Q ss_pred heeeeeeccc
Q psy12819 580 ITFYYIVYKV 589 (675)
Q Consensus 580 ~v~~~~~~~~ 589 (675)
++.++.+.+.
T Consensus 160 ~~~~~~~~~~ 169 (406)
T PF00474_consen 160 VVLIFVLSAV 169 (406)
T ss_dssp HHHHHHHHHH
T ss_pred Hhhhccchhc
Confidence 8887776544
No 149
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.62 E-value=1.5e+02 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCCCCccccccCCCCCChHHHHHHHHHHhHhHhhhH
Q psy12819 418 KDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILS 453 (675)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~~~a~~nl~k~~iG~GiL~ 453 (675)
+++++|.-+.--+.+++-..+..--+.+.+|+||++
T Consensus 48 ~p~Y~PWf~PlwEPpsGEiESlLFaLQAaiGagiIg 83 (91)
T TIGR01165 48 GPDYKPWFSPLWEPPSGEIESLLFALQAALGALVIG 83 (91)
T ss_pred CCCCcccccccccCCcchHHHHHHHHHHHhhheeee
Confidence 344556543333456777888888899999999975
No 150
>KOG2083|consensus
Probab=20.99 E-value=1.7e+02 Score=33.34 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=35.9
Q ss_pred CChHHHHH-----HHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHH---HHHhhccCCCCc
Q psy12819 433 VTDGETLT-----HLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCS---YILGWRNTDPLA 493 (675)
Q Consensus 433 ~s~~~a~~-----nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~---~lL~~~~~~~~~ 493 (675)
-+||+.++ |+...++ .|=+++-..+.|...|.+++.++..+++-|. .-++.|++...+
T Consensus 30 fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G 95 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG 95 (643)
T ss_pred EeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC
Confidence 35666655 3333222 4667888889999988888777665555544 444556665443
Done!