Query psy12819
Match_columns 675
No_of_seqs 408 out of 2996
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:39:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.5 8.6E-08 2.9E-12 104.7 5.3 216 13-259 5-226 (445)
2 3gia_A Uncharacterized protein 97.9 9.5E-06 3.2E-10 88.3 7.0 214 14-259 4-223 (444)
3 4djk_A Probable glutamate/gamm 97.2 0.00062 2.1E-08 75.3 8.4 214 12-259 7-236 (511)
4 3l1l_A Arginine/agmatine antip 96.1 0.021 7E-07 61.6 10.6 74 429-503 6-80 (445)
5 3gia_A Uncharacterized protein 91.9 0.23 7.9E-06 53.3 7.2 72 430-502 5-78 (444)
6 2jln_A MHP1; hydantoin, transp 90.3 1.1 3.6E-05 49.1 10.5 152 14-184 23-175 (501)
7 4djk_A Probable glutamate/gamm 72.0 15 0.0005 39.7 10.3 70 429-503 9-82 (511)
8 3dh4_A Sodium/glucose cotransp 44.5 2.2E+02 0.0076 30.7 13.6 154 15-191 19-174 (530)
9 2jln_A MHP1; hydantoin, transp 39.2 59 0.002 35.1 7.8 63 522-586 125-187 (501)
10 2xq2_A Sodium/glucose cotransp 32.9 3.6E+02 0.012 29.4 13.1 149 16-187 49-199 (593)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.47 E-value=8.6e-08 Score=104.70 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=122.5
Q ss_pred ccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 13 ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
+++++.+.++.+...+.+++|+|++.+|...++.|.. +++..++.++.+......+.|...+.+ +..++-+..+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p-----~~Gg~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDP-----SPGGSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CTTTHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCchhhHH
Confidence 4567889999999999999999999999998888864 677777777777777776766554432 2345666667
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
+.+ ||....++.....+.......++....++.+...++.. +.++.... ..+....+.-....+..|.
T Consensus 79 ~~~----------G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~in~~g~~~ 146 (445)
T 3l1l_A 79 RCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPWVLTI-TCVVVLWIFVLLNIVGPKM 146 (445)
T ss_dssp HHS----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred hHc----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-cccHHHHH-HHHHHHHHHHHHHHhchHH
Confidence 776 66677777777666555444445444444443332221 00111111 1122222222333445555
Q ss_pred cchhhhHHHHHHHHHhheeEEEEccc-CCC-CCC-CC--CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819 173 LAPVSMVANLLMGTGLGITFYYIVWD-LHK-PME-MP--QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR 247 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~ii~~~~~~~-~~~-~~~-~~--~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~ 247 (675)
...+..+.....+..++.++...... .++ ..+ .. ...++.++..++....|+|.+...+...-.|
T Consensus 147 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e---------- 216 (445)
T 3l1l_A 147 ITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV---------- 216 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGG----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----------
Confidence 55555444433322222111111111 111 100 00 0113456788889999999999999999898
Q ss_pred hhhhcCCCC-ccc
Q psy12819 248 ELMIGNGRD-HNV 259 (675)
Q Consensus 248 ~~M~~~p~~-~~~ 259 (675)
+ |||+| .+|
T Consensus 217 --~-k~p~r~ip~ 226 (445)
T 3l1l_A 217 --V-KNPKRNVPI 226 (445)
T ss_dssp --B-SSHHHHHHH
T ss_pred --h-cCccccccH
Confidence 8 89865 454
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.93 E-value=9.5e-06 Score=88.35 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=116.1
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
++++.+.++.+...+.+++|+|++.+|.. .+.+|- .+.+..++.++++......+.|...+.+ +....-+.++
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-----~~Gg~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-----SNAGPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CTTTHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCcHHHhHH
Confidence 45778999999999999999999998754 556676 5667777777777777777766554332 2345556777
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHH--HHHHHHHHHHHhhcccCc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRV--YISAFLIPLILLSWVPNL 170 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~--~~~i~~~~~~pl~~~~~l 170 (675)
+.+| +++ .+.. +.....+.....+..+....++.+...++. ..+... .+.+....++-....+..
T Consensus 78 ~~~G--~~~------~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~in~~g~ 144 (444)
T 3gia_A 78 KAIG--DNI------ITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGIVAFFTALNFFGS 144 (444)
T ss_dssp HHHC--SSH------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhC--cch------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHhH
Confidence 7772 211 0222 223333333333444455555555554432 111111 111222222223334455
Q ss_pred cccchhhhHHHHHHHHHhheeEEEEc-c-cCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhh
Q psy12819 171 KSLAPVSMVANLLMGTGLGITFYYIV-W-DLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRE 248 (675)
Q Consensus 171 ~~L~~~S~~~~~~~~~~~~ii~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~ 248 (675)
|....+..+.....+..++..+.... . +..+..+.....++.++...+....|+|.|.-.+...-.|
T Consensus 145 ~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e----------- 213 (444)
T 3gia_A 145 KAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEH----------- 213 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH-----------
Confidence 55555554443332222221111011 1 1111111111112345677788889999999999888888
Q ss_pred hhhcCCCC-ccc
Q psy12819 249 LMIGNGRD-HNV 259 (675)
Q Consensus 249 ~M~~~p~~-~~~ 259 (675)
+ |||+| .+|
T Consensus 214 -~-k~P~r~ip~ 223 (444)
T 3gia_A 214 -I-ENPKKNVPR 223 (444)
T ss_dssp -B-SSHHHHHHH
T ss_pred -c-cCcccchhH
Confidence 8 99976 455
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.17 E-value=0.00062 Score=75.27 Aligned_cols=214 Identities=9% Similarity=-0.003 Sum_probs=99.7
Q ss_pred CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHH-HHHHHHHHhhHHHhh--hcCCCCCCHH
Q psy12819 12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICT-HCSYILVQCGHVLYR--RTKVTSMSFA 88 (675)
Q Consensus 12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~-~t~~lL~~~~~~~~~--~~~~~~~sy~ 88 (675)
.+.+++.+.++.+...+++++| +.++|. .+..|.. +++..++.+.+.. .....+.|. +. +. + ....-
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael----~s~~~~-P-~GG~y 76 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEM----ATVDGW-E-EGGVF 76 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHH----HTTSCC-----CHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHH----cccccC-C-CCChh
Confidence 4456788999999998988886 677775 5677753 3333333332222 234444443 32 21 1 34555
Q ss_pred HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH--HhhcCCCccHHHHHHHHHHHHHHhhc
Q psy12819 89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI--NHYTGTELDIRVYISAFLIPLILLSW 166 (675)
Q Consensus 89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~--~~~~~~~~~~~~~~~i~~~~~~pl~~ 166 (675)
+-+++.+ |+....++.....+.......++....++.+...+ +......+....+. +....++-...
T Consensus 77 ~~~~~~~----------g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~in 145 (511)
T 4djk_A 77 AWVSNTL----------GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAA-LIILWALALTQ 145 (511)
T ss_dssp HHHHHHH----------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHH-HHHHHHHHHHH
T ss_pred hhHHhhc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHH-HHHHHHHHHHH
Confidence 5666666 55556666666666555544555444444443331 11111111122222 22222222333
Q ss_pred ccCccccchhhhHHHHH-H---HHHhhee-EEEEcccCCC---CCCCCCCCCC--CchhhHhHHHHhhhccceEeeeecc
Q psy12819 167 VPNLKSLAPVSMVANLL-M---GTGLGIT-FYYIVWDLHK---PMEMPQIADI--STMPTFFSIVIFAIEAIGVVISFRT 236 (675)
Q Consensus 167 ~~~l~~L~~~S~~~~~~-~---~~~~~ii-~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~i~~faf~~h~~i~~i~~ 236 (675)
.+..|....+..+.... . +..+++. +.....+.+. .+....+.+. .+....+....|+|.|.-.....-.
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~ 225 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVN 225 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44455555544443221 1 1111111 1000011110 0111111111 2344567788999999999999999
Q ss_pred ccccCCCchhhhhhhcCCCCc-cc
Q psy12819 237 ATLLSRPVISRELMIGNGRDH-NV 259 (675)
Q Consensus 237 ~~~~~~~~~~~~~M~~~p~~~-~~ 259 (675)
| + |||+|- +|
T Consensus 226 E------------~-k~P~k~ip~ 236 (511)
T 4djk_A 226 E------------M-SNPGRDYPL 236 (511)
T ss_dssp S------------S-SCCTTTHHH
T ss_pred h------------c-cCcccchhH
Confidence 9 9 999764 44
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.08 E-value=0.021 Score=61.65 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=48.1
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~ 503 (675)
.+|+-+.++..+..+.+.+|+|++.+|....+.|-. +.+..++.++++........+ ..+.|...+..+|.+..
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 345678999999999999999999999998888864 566666655555544443332 12233333444454443
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=91.92 E-value=0.23 Score=53.27 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHH
Q psy12819 430 AHPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNS 502 (675)
Q Consensus 430 ~~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~ 502 (675)
+|+-+.++..+-.+.+.+|+|++.+| .+.+++|- ...+..++.++++......+.+ ..+.|...+..+|.+.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 78 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHK 78 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHH
Confidence 45678999999999999999999876 45566665 4455555555555544444433 2233443334444444
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=90.27 E-value=1.1 Score=49.12 Aligned_cols=152 Identities=9% Similarity=0.031 Sum_probs=93.5
Q ss_pred cCCCCChHHHHHHHHHhhhccccchHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819 14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRN-AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE 92 (675)
Q Consensus 14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 92 (675)
++++.+.++-+..-+...++.+.+.+...+.. .++..+++.+++..++...-+-+...... |. ..+|.++.|
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~---Gl~~~v~~R 95 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RW---GINFTVAAR 95 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HH---CCCHHHHTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hc---CCChhhhhH
Confidence 45556777777777777777777777665554 23455555555544444433333333222 22 257999999
Q ss_pred HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
..| |++|..+..+...+.++|-...-....++.+..+++...+. .+.....+++.++.++..+. ..+.
T Consensus 96 ~~F----------G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-~~~~v~~~i~~~l~~~~~~~-G~~~ 163 (501)
T 2jln_A 96 MPF----------GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-TNLPLWIVIFGAIQVVTTFY-GITF 163 (501)
T ss_dssp TTS----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred hhc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHh-CHHH
Confidence 887 67788888888888888877777777788888877644321 12344455555666666643 3566
Q ss_pred cchhhhHHHHHH
Q psy12819 173 LAPVSMVANLLM 184 (675)
Q Consensus 173 L~~~S~~~~~~~ 184 (675)
++++..+....+
T Consensus 164 i~~~~~~~~p~~ 175 (501)
T 2jln_A 164 IRWMNVFASPVL 175 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655554433
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=71.96 E-value=15 Score=39.72 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHH----HHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819 429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVI----CTHCSYILGWRNTDPLAESFTRYRNSI 503 (675)
Q Consensus 429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l----~~y~~~lL~~~~~~~~~~~~~~~~~~~ 503 (675)
.+|+-+.++...-.+.+++| +.++|. ..++|... ++..++.+++ ..++.-.+....+.| ..+...|.+..
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~-~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~ 82 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSL-VFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNT 82 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHH-HHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhh
Confidence 34567889988888888885 667775 56777643 3333333322 334444453311445 44444454443
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=44.46 E-value=2.2e+02 Score=30.70 Aligned_cols=154 Identities=9% Similarity=0.024 Sum_probs=79.2
Q ss_pred CCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 15 NNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 15 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
.++.+++...+++..+.+++. .+++|-...+.|+........ .++........+..- . +| .+..|..|.-++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~---~-~~--~~~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPI---F-IE--KGIYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHH---H-HH--TTCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHH---H-HH--cCCccHHHHHHH
Confidence 456788888888888887664 678898888888753321111 111111112222221 1 12 235889988887
Q ss_pred HHhcCCcccccchhhhHHHHHHHHHH-HHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819 94 AFAKGPAWGRRYARFARICILLGLFL-AYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS 172 (675)
Q Consensus 94 ~~~~g~~~~~~~g~~~~~~v~i~i~~-~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 172 (675)
-| |+..|.+..+...+ +.+..+.+-+...+..++.+ . +++....+++..++....+...-++.
T Consensus 92 Rf----------g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~----~--Gi~~~~~i~i~~~i~~~Yt~~GGl~a 155 (530)
T 3dh4_A 92 RF----------NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI----L--GIPLMYSILGLALFALVYSIYGGLSA 155 (530)
T ss_dssp HT----------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----T--TCCHHHHHHHHHHHHHHTTC------
T ss_pred Hc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--CCCHHHHHHHHHHHHHHHHHhcchHH
Confidence 66 56666666554332 22111111111122223332 2 25555556666666677788888888
Q ss_pred cchhhhHHHHHHHHHhhee
Q psy12819 173 LAPVSMVANLLMGTGLGIT 191 (675)
Q Consensus 173 L~~~S~~~~~~~~~~~~ii 191 (675)
..+...+=.+.++.+.+++
T Consensus 156 V~~TD~iQ~~im~~g~~~v 174 (530)
T 3dh4_A 156 VVWTDVIQVFFLVLGGFMT 174 (530)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877666555444433
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=39.18 E-value=59 Score=35.08 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhheeeeee
Q psy12819 522 ISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIV 586 (675)
Q Consensus 522 ~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~~~~ 586 (675)
.++.++++++...+.. +..+.+++..++.++.++ .-++.+.++..++...+++.++.+.++.+
T Consensus 125 gg~al~~~~~~~~g~~-~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~i~~i~~~~~~l 187 (501)
T 2jln_A 125 GALALDEITRLLTGFT-NLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASPVLLAMGVYMVYLML 187 (501)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666654332221 134445556666677774 55788888888777666666655555443
No 10
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=32.89 E-value=3.6e+02 Score=29.43 Aligned_cols=149 Identities=9% Similarity=0.037 Sum_probs=75.3
Q ss_pred CCCChHHHHHHHHHhhhcccc-chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 16 NIGKDGETLTHLLKASLGTGI-LSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 16 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
++.+++...+++..+.+++.. ++.|-...+.|+........ .+.........+..- . +| .+..|..|.-++=
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~---~-~r--~~~~T~~e~l~~R 121 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPI---F-IE--KGIYTIPEFVEKR 121 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHH---H-HH--TTCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHH---H-Hh--CCCCCcHHHHHHH
Confidence 566788888888887777665 68888878888753322111 111111111222211 1 12 2357888888765
Q ss_pred HhcCCcccccchhhhHHHHHHHHHH-HHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819 95 FAKGPAWGRRYARFARICILLGLFL-AYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL 173 (675)
Q Consensus 95 ~~~g~~~~~~~g~~~~~~v~i~i~~-~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L 173 (675)
| |+..|.+..+...+ ..+.....-+...+..++.++ +++....+++..++....+...-++..
T Consensus 122 f----------g~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~------Gi~~~~~i~i~~~i~~~Yt~~GGl~av 185 (593)
T 2xq2_A 122 F----------NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL------GIPLMYSILGLALFALVYSIYGGLSAV 185 (593)
T ss_dssp T----------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHTTC---C
T ss_pred c----------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5 56666665544332 222111111112233344433 245555555566666677778888888
Q ss_pred chhhhHHHHHHHHH
Q psy12819 174 APVSMVANLLMGTG 187 (675)
Q Consensus 174 ~~~S~~~~~~~~~~ 187 (675)
.+.-.+=.+.++.+
T Consensus 186 ~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 186 VWTDVIQVFFLVLG 199 (593)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77776655544433
Done!