Query psy12819
Match_columns 675
No_of_seqs 408 out of 2996
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 20:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12819.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12819hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5c_ f.23.29.1 (C:) Sec-bet 3.4 1.7E+02 0.012 16.3 0.7 20 651-670 9-29 (32)
2 d1x62a2 g.39.1.3 (A:8-42) PDZ 3.1 1.8E+02 0.013 17.1 0.7 17 637-654 18-34 (35)
3 d1jfia_ a.22.1.3 (A:) Negative 2.6 7.4E+02 0.054 16.1 3.9 39 54-93 26-64 (66)
4 d1n1jb_ a.22.1.3 (B:) Nuclear 2.6 8.1E+02 0.059 16.4 5.2 41 54-95 24-64 (78)
5 d1q90r_ f.23.12.1 (R:) ISP sub 2.6 3E+02 0.022 16.7 1.3 17 376-392 19-35 (39)
6 d1q90g_ f.23.26.1 (G:) PetG su 2.1 4.8E+02 0.035 14.4 1.7 16 461-476 7-22 (30)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.1 1E+03 0.073 20.3 5.1 29 449-477 14-42 (248)
8 d1x64a1 g.39.1.3 (A:8-52) PDZ 1.9 3.3E+02 0.024 17.0 0.7 17 637-654 28-44 (45)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 1.8 1.4E+03 0.1 19.6 6.3 31 39-69 400-430 (447)
10 d1v7ba1 a.4.1.9 (A:1-74) Trans 1.8 1E+03 0.073 15.3 3.7 26 69-94 9-34 (74)
No 1
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.36 E-value=1.7e+02 Score=16.28 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=12.2
Q ss_pred ccCcccch-HHHHHHHHHHhh
Q psy12819 651 NAGLTGGI-FLTVLVAVICTH 670 (675)
Q Consensus 651 ~~~~~~~~-~~~~~~~~~~~~ 670 (675)
.|+|+.|+ +..+.|-.|.++
T Consensus 9 kpehvigvtvafviieailty 29 (32)
T d1rh5c_ 9 KPEHVIGVTVAFVIIEAILTY 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEehhhHHHHHhh
Confidence 67887775 345555555554
No 2
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=1.8e+02 Score=17.07 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=11.3
Q ss_pred cccccccccchhhhccCc
Q psy12819 637 SLGTGILSMPYAFRNAGL 654 (675)
Q Consensus 637 ~~g~~~~~~~~~m~~~~~ 654 (675)
.+|+ +.-.....|+|+-
T Consensus 18 IVG~-~VK~rDk~rHPeC 34 (35)
T d1x62a2 18 IVGV-FVKLRDRHRHPEC 34 (35)
T ss_dssp CCSS-CEECSSCEECTTT
T ss_pred cEeE-EEEeccccCCCCC
Confidence 3566 6666677777764
No 3
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.62 E-value=7.4e+02 Score=16.08 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819 54 LTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93 (675)
Q Consensus 54 lli~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 93 (675)
..++....-.+..++.-++.+.. ++.++...+|+|+.+.
T Consensus 26 ~~~~~~a~E~Fi~~l~~~A~~~a-~~~krktI~~~dl~~a 64 (66)
T d1jfia_ 26 PVIISRALELFLESLLKKACQVT-QSRNAKTMTTSHLKQC 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTC---CBCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCcCCHHHHHHH
Confidence 34445555566666666665543 3444456899998763
No 4
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.61 E-value=8.1e+02 Score=16.37 Aligned_cols=41 Identities=7% Similarity=-0.020 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819 54 LTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95 (675)
Q Consensus 54 lli~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 95 (675)
..++.-....+..++.-++.+. +++.++...+|+|+.+..-
T Consensus 24 ~~~i~~a~E~Fi~~l~~~A~~~-a~~~~rkti~~~dl~~av~ 64 (78)
T d1n1jb_ 24 PVLFAKAAQIFITELTLRAWIH-TEDNKRRTLQRNDIAMAIT 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcCCHHHHHHHHh
Confidence 3344444555555555555543 3344445789999999863
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.57 E-value=3e+02 Score=16.70 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=8.7
Q ss_pred hhHHHHHHhhhhhhhhh
Q psy12819 376 SMVANLLMGTGLGITFY 392 (675)
Q Consensus 376 g~~~~~~l~filP~~fy 392 (675)
|+++....+...|-.-|
T Consensus 19 G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 19 GGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhccceeEE
Confidence 55555555555554433
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.14 E-value=4.8e+02 Score=14.44 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=9.8
Q ss_pred cChhHHHHHHHHHHHH
Q psy12819 461 AGLTGGIFLTVLVAVI 476 (675)
Q Consensus 461 ~G~v~g~i~l~~~a~l 476 (675)
+|++.|.+-..+.+++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 4666676666666643
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.11 E-value=1e+03 Score=20.31 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=22.2
Q ss_pred HhhhHHHHHhHhcChhHHHHHHHHHHHHH
Q psy12819 449 TGILSMPYAFRNAGLTGGIFLTVLVAVIC 477 (675)
Q Consensus 449 ~GiL~LP~af~~~G~v~g~i~l~~~a~l~ 477 (675)
.++.+.|.++.++-|.++.+++++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 14 LVGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 34667799999999999877776666554
No 8
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.86 E-value=3.3e+02 Score=16.97 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=10.7
Q ss_pred cccccccccchhhhccCc
Q psy12819 637 SLGTGILSMPYAFRNAGL 654 (675)
Q Consensus 637 ~~g~~~~~~~~~m~~~~~ 654 (675)
.+|+ +.=.....||||-
T Consensus 28 IVG~-~VK~rDK~rHPeC 44 (45)
T d1x64a1 28 IVGA-VVKARDKYRHPEC 44 (45)
T ss_dssp CCSC-CEESSSCEECTTT
T ss_pred cEEE-EEEeccccCCCCC
Confidence 3566 6666666777764
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=1.85 E-value=1.4e+03 Score=19.60 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Q psy12819 39 MPYAFRNAGLTGGIFLTVLVAVICTHCSYIL 69 (675)
Q Consensus 39 LP~af~~~G~~~g~illi~~~~~~~~t~~lL 69 (675)
..+.....|+-.....+..+++++......+
T Consensus 400 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667787655555555555444433333
No 10
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=1.78 E-value=1e+03 Score=15.29 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819 69 LVQCGHVLYRRTKVTSMSFADIGEVA 94 (675)
Q Consensus 69 L~~~~~~~~~~~~~~~~sy~~l~~~~ 94 (675)
+++++.++-.+.+....|..+|++.+
T Consensus 9 Il~aa~~l~~~~G~~~~s~~~Ia~~a 34 (74)
T d1v7ba1 9 ILRTAIDYIGEYSLETLSYDSLAEAT 34 (74)
T ss_dssp HHHHHHHHHHHSCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCHHHHHHHh
Done!