RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12819
         (675 letters)



>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score = 27.3 bits (60), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 489 TDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHY 533
           TDP+A+  TR RN+        D+      +S+    I +++   
Sbjct: 1   TDPIADMLTRIRNATRVYKESTDVP-----ASRFKEEILRILARE 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,549,557
Number of extensions: 120565
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 6
Length of query: 675
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 584
Effective length of database: 1,158,166
Effective search space: 676368944
Effective search space used: 676368944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.7 bits)