BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1282
         (487 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
           Vinosum In The Open State
 pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
           Vinosum In The Open State
          Length = 397

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 309 HELSSSASLTPKSTLPLYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKE 368
           H LSS A      +LP  ++S       V    M+GA Y++ LD      D+L +  S  
Sbjct: 22  HRLSSEAE-----SLPSVIVSSQAAGNAV----MLGAGYFSPLDGFMNLADALSSAQSMT 72

Query: 369 MENGRLF 375
           + +GR F
Sbjct: 73  LTDGRFF 79


>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
          Length = 306

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 233 TWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSV 292
           T +E G + M +  +  L+  V ++ + W   S +++ +N    GT   I + + D  S 
Sbjct: 169 TLTEDGTQKMFEK-QHVLMFAVFDESKSWNQTSSLMYTVNGYVNGTMPDITVCAHDHISW 227

Query: 293 LVV---SYAEL------KQCLDQSFHELSSSASLTPKSTLPLYLLSVHQKRTVVDLMP 341
            ++   S  EL       Q L+Q+ H++S+   ++  ST     +S   + T+  L+P
Sbjct: 228 HLIGMSSGPELFSIHFNGQVLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIP 285


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,551,255
Number of Sequences: 62578
Number of extensions: 609236
Number of successful extensions: 1403
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 10
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)