BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1282
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q640Q5|PAN3_MOUSE PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Mus
musculus GN=Pan3 PE=2 SV=3
Length = 837
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 127/201 (63%), Positives = 166/201 (82%), Gaps = 1/201 (0%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-RTVV 175
Q DL +LGK++LA+ C SL +QRENLQ +++L+ +YS+DL+NLILYLL+ + R+V
Sbjct: 630 QADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVN 689
Query: 176 DLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWS 235
D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KLGTINERPE DPTWS
Sbjct: 690 DIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWS 749
Query: 236 ETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVV 295
ETGDRY+LKLFRD+L HQV E G PW+D+SHI+ CLNKLDAG EKI L+SRDE+SVLVV
Sbjct: 750 ETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVV 809
Query: 296 SYAELKQCLDQSFHELSSSAS 316
+Y++LK+C + +F EL ++A+
Sbjct: 810 TYSDLKRCFENTFQELIAAAN 830
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 323 LPLYLLSVHQK-RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
L LYLL+ + R+V D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KL
Sbjct: 674 LILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKL 733
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
GTINERPE DPTWSETGDRY+LKLFRD+L HQV E G PW+D+SHI+ CLNKLDAG
Sbjct: 734 GTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVP 793
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
EKI L+SRDE+SVLVV+Y++LK+C + +F EL ++A+
Sbjct: 794 EKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAAN 830
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 9 QENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPN 68
+E GGTTYFY D AP P Y ++P T PHV + P
Sbjct: 341 KETVGGTTYFYT-----------------DTTPAPLTGMVFPNYHIYPPTAPHVAYMQPK 383
Query: 69 AATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYH 114
A + SF+M++ +R E+ +++ +T+ + P +P EVD+YH
Sbjct: 384 A---NAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYH 426
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 8 SQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPP 67
SQ N + + PS G+ P AG APG LSA P T H P R P
Sbjct: 253 SQSNMSAFSQVFSHPSMGS--PATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTP 310
Query: 68 NAAT 71
N A+
Sbjct: 311 NPAS 314
>sp|Q58A45|PAN3_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Homo
sapiens GN=PAN3 PE=1 SV=3
Length = 887
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 127/201 (63%), Positives = 166/201 (82%), Gaps = 1/201 (0%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-RTVV 175
Q DL +LGK++LA+ C SL +QRENLQ +++L+ +YS+DL+NLILYLL+ + R+V
Sbjct: 684 QADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVN 743
Query: 176 DLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWS 235
D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KLGTINERPE DPTWS
Sbjct: 744 DIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWS 803
Query: 236 ETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVV 295
ETGDRY+LKLFRD+L HQV E G PW+D+SHI+ CLNKLDAG EKI L+SRDE+SVLVV
Sbjct: 804 ETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVV 863
Query: 296 SYAELKQCLDQSFHELSSSAS 316
+Y++LK+C + +F EL ++A+
Sbjct: 864 TYSDLKRCFENTFQELIAAAN 884
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 323 LPLYLLSVHQK-RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
L LYLL+ + R+V D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KL
Sbjct: 728 LILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKL 787
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
GTINERPE DPTWSETGDRY+LKLFRD+L HQV E G PW+D+SHI+ CLNKLDAG
Sbjct: 788 GTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVP 847
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
EKI L+SRDE+SVLVV+Y++LK+C + +F EL ++A+
Sbjct: 848 EKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAAN 884
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 9 QENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPN 68
+E GGTTYFY D AP P Y ++P T PHV + P
Sbjct: 395 KETVGGTTYFYT-----------------DTTPAPLTGMVFPNYHIYPPTAPHVAYMQPK 437
Query: 69 AATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYH 114
A + SF+M++ +R E+ +++ +T+ + P +P EVD+YH
Sbjct: 438 A---NAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYH 480
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 8 SQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPP 67
SQ N + + PS G+ P AG APG LSA P T H P R P
Sbjct: 307 SQSNMSAFSQVFSHPSMGS--PATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTP 364
Query: 68 NAAT 71
N A+
Sbjct: 365 NPAS 368
>sp|A1L1C7|PAN3_XENTR PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Xenopus
tropicalis GN=pan3 PE=2 SV=1
Length = 787
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 127/201 (63%), Positives = 165/201 (82%), Gaps = 1/201 (0%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-RTVV 175
Q DL +LGK++LA+ C SL +QRENLQ +++L+ +YS+DL+NLILYLL+ + R+V
Sbjct: 584 QADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTEQNRMRSVN 643
Query: 176 DLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWS 235
D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KLGTINERPE DP WS
Sbjct: 644 DIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPAWS 703
Query: 236 ETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVV 295
ETGDRY+LKLFRD+L HQV E G PW+D+SHIV CLNKLDAG EKI L+SRDE+SVLVV
Sbjct: 704 ETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLISRDEKSVLVV 763
Query: 296 SYAELKQCLDQSFHELSSSAS 316
+Y++LK+C + +F EL ++A+
Sbjct: 764 TYSDLKRCFENTFQELVAAAN 784
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%), Gaps = 1/157 (0%)
Query: 323 LPLYLLSVHQK-RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
L LYLL+ + R+V D+MPMIGAR+YTQLDA Q+ D +E +L+KE++NGRLFRLL KL
Sbjct: 628 LILYLLTEQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKL 687
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
GTINERPE DP WSETGDRY+LKLFRD+L HQV E G PW+D+SHIV CLNKLDAG
Sbjct: 688 GTINERPEFQKDPAWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVP 747
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
EKI L+SRDE+SVLVV+Y++LK+C + +F EL ++A+
Sbjct: 748 EKISLISRDEKSVLVVTYSDLKRCFENTFQELVAAAN 784
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 6 LCSQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHK 65
+ + GGTTYFY D AP P Y ++P T PH+ +
Sbjct: 294 IIQKATVGGTTYFYT-----------------DTTPAPLTGMVFPNYHIYPPTAPHIAYM 336
Query: 66 PPNAATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYH 114
P A + SF+M++ +R E+ +++ +T+ + P +P EVD+YH
Sbjct: 337 QPKA---NAPSFFMADELRQELINRHLITMAQIDQADMPGVPAEVDSYH 382
>sp|P0CP50|PAN3_CRYNJ PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAN3 PE=3 SV=1
Length = 684
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 147/203 (72%), Gaps = 5/203 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSV---HQKRT 173
Q+DL + GKLI+++TC +L ++ ++R YS+DL NLILYL+S Q ++
Sbjct: 478 QEDLLSFGKLIISLTCDFFQPTLPFSL--PLEHISRHYSSDLSNLILYLISKPAQGQIKS 535
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
+ +++ M+G R +LDAVQ + D LENEL E+ENGR+ RLL KLG INER E LDP
Sbjct: 536 IDEVVKMMGPRILNELDAVQSYADVLENELGAEVENGRIVRLLTKLGFINERAEFELDPR 595
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WS+TGDRY+LKLFRDY+ H V DG+P LD+SH++ CLNKLDAG E++ L+SRD+QS L
Sbjct: 596 WSDTGDRYILKLFRDYVFHSVGVDGKPILDLSHVLVCLNKLDAGLDERVMLVSRDDQSCL 655
Query: 294 VVSYAELKQCLDQSFHELSSSAS 316
VVSY E+K C++ +F+EL ++ +
Sbjct: 656 VVSYREIKHCIEAAFNELKNAGN 678
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 120/161 (74%), Gaps = 3/161 (1%)
Query: 321 STLPLYLLSV---HQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRL 377
S L LYL+S Q +++ +++ M+G R +LDAVQ + D LENEL E+ENGR+ RL
Sbjct: 518 SNLILYLISKPAQGQIKSIDEVVKMMGPRILNELDAVQSYADVLENELGAEVENGRIVRL 577
Query: 378 LVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLD 437
L KLG INER E LDP WS+TGDRY+LKLFRDY+ H V DG+P LD+SH++ CLNKLD
Sbjct: 578 LTKLGFINERAEFELDPRWSDTGDRYILKLFRDYVFHSVGVDGKPILDLSHVLVCLNKLD 637
Query: 438 AGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
AG E++ L+SRD+QS LVVSY E+K C++ +F+EL ++ +
Sbjct: 638 AGLDERVMLVSRDDQSCLVVSYREIKHCIEAAFNELKNAGN 678
>sp|P0CP51|PAN3_CRYNB PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAN3 PE=3 SV=1
Length = 684
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 147/203 (72%), Gaps = 5/203 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSV---HQKRT 173
Q+DL + GKLI+++TC +L ++ ++R YS+DL NLILYL+S Q ++
Sbjct: 478 QEDLLSFGKLIISLTCDFFQPTLPFSL--PLEHISRHYSSDLSNLILYLISKPAQGQIKS 535
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
+ +++ M+G R +LDAVQ + D LENEL E+ENGR+ RLL KLG INER E LDP
Sbjct: 536 IDEVVKMMGPRILNELDAVQSYADVLENELGAEVENGRIVRLLTKLGFINERAEFELDPR 595
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WS+TGDRY+LKLFRDY+ H V DG+P LD+SH++ CLNKLDAG E++ L+SRD+QS L
Sbjct: 596 WSDTGDRYILKLFRDYVFHSVGVDGKPILDLSHVLVCLNKLDAGLDERVMLVSRDDQSCL 655
Query: 294 VVSYAELKQCLDQSFHELSSSAS 316
VVSY E+K C++ +F+EL ++ +
Sbjct: 656 VVSYREIKHCIEAAFNELKNAGN 678
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 120/161 (74%), Gaps = 3/161 (1%)
Query: 321 STLPLYLLSV---HQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRL 377
S L LYL+S Q +++ +++ M+G R +LDAVQ + D LENEL E+ENGR+ RL
Sbjct: 518 SNLILYLISKPAQGQIKSIDEVVKMMGPRILNELDAVQSYADVLENELGAEVENGRIVRL 577
Query: 378 LVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLD 437
L KLG INER E LDP WS+TGDRY+LKLFRDY+ H V DG+P LD+SH++ CLNKLD
Sbjct: 578 LTKLGFINERAEFELDPRWSDTGDRYILKLFRDYVFHSVGVDGKPILDLSHVLVCLNKLD 637
Query: 438 AGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
AG E++ L+SRD+QS LVVSY E+K C++ +F+EL ++ +
Sbjct: 638 AGLDERVMLVSRDDQSCLVVSYREIKHCIEAAFNELKNAGN 678
>sp|P0CD65|PAN3_DICDI PAB-dependent poly(A)-specific ribonuclease subunit 3
OS=Dictyostelium discoideum GN=DDB_G0279129 PE=3 SV=1
Length = 746
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 138/201 (68%), Gaps = 2/201 (0%)
Query: 118 DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLS--VHQKRTVV 175
+DL G+LIL + CRS + NL SI+ ++ YS +L NLI+YLL+ V +
Sbjct: 544 EDLLLFGRLILTLACRSAQSTTTTNLSKSIEYVSNQYSKELYNLIVYLLTKPVINLPNID 603
Query: 176 DLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWS 235
+++ MI R + + + + D LE ELSKE ENGRLFRL+ KLG INERP ++DP WS
Sbjct: 604 EVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRLVTKLGFINERPLYDMDPRWS 663
Query: 236 ETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVV 295
ETGDRY++KLFRDY+ HQV +DG P LD H+V LNKLD G EKI LMSRDEQS+LVV
Sbjct: 664 ETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLDCGVDEKILLMSRDEQSLLVV 723
Query: 296 SYAELKQCLDQSFHELSSSAS 316
SY +LK+C+D +F EL S S
Sbjct: 724 SYKDLKKCIDSAFSELVSQKS 744
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 112/159 (70%), Gaps = 2/159 (1%)
Query: 322 TLPLYLLS--VHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLV 379
L +YLL+ V + +++ MI R + + + + D LE ELSKE ENGRLFRL+
Sbjct: 586 NLIVYLLTKPVINLPNIDEVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRLVT 645
Query: 380 KLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAG 439
KLG INERP ++DP WSETGDRY++KLFRDY+ HQV +DG P LD H+V LNKLD G
Sbjct: 646 KLGFINERPLYDMDPRWSETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLDCG 705
Query: 440 TQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSAS 478
EKI LMSRDEQS+LVVSY +LK+C+D +F EL S S
Sbjct: 706 VDEKILLMSRDEQSLLVVSYKDLKKCIDSAFSELVSQKS 744
>sp|P34653|YOT7_CAEEL Uncharacterized protein ZK632.7 OS=Caenorhabditis elegans
GN=ZK632.7 PE=4 SV=3
Length = 632
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 135/194 (69%)
Query: 118 DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRTVVDL 177
+DL G LI+A+ +++ Q + +YS DLRN+I +L + ++T+ ++
Sbjct: 430 EDLNMFGNLIVALATGRANGWRKDLYQQLKKFIEDTYSMDLRNVIGFLHNNSTRKTINEI 489
Query: 178 MPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSET 237
MPMIG R++T ++ +Q D LE ELS+EMENGRLFRL+ K+ T+ ER E D WSET
Sbjct: 490 MPMIGGRFFTVMENMQAKTDVLEAELSREMENGRLFRLVAKMNTVLERVEHGTDDAWSET 549
Query: 238 GDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSY 297
GDR+MLKLFRDY+ HQV + G+ WLDM+HIV CLNKLD G+QEKI ++SR + +++ Y
Sbjct: 550 GDRFMLKLFRDYVFHQVTDQGKAWLDMAHIVQCLNKLDCGSQEKIEMVSRSGDTQIIIDY 609
Query: 298 AELKQCLDQSFHEL 311
A LK+CLD+SF +L
Sbjct: 610 ATLKRCLDKSFRDL 623
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 112/148 (75%)
Query: 326 YLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTIN 385
+L + ++T+ ++MPMIG R++T ++ +Q D LE ELS+EMENGRLFRL+ K+ T+
Sbjct: 476 FLHNNSTRKTINEIMPMIGGRFFTVMENMQAKTDVLEAELSREMENGRLFRLVAKMNTVL 535
Query: 386 ERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKIC 445
ER E D WSETGDR+MLKLFRDY+ HQV + G+ WLDM+HIV CLNKLD G+QEKI
Sbjct: 536 ERVEHGTDDAWSETGDRFMLKLFRDYVFHQVTDQGKAWLDMAHIVQCLNKLDCGSQEKIE 595
Query: 446 LMSRDEQSVLVVSYAELKQCLDQSFHEL 473
++SR + +++ YA LK+CLD+SF +L
Sbjct: 596 MVSRSGDTQIIIDYATLKRCLDKSFRDL 623
>sp|Q6MY57|PAN3_ASPFU PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pan3 PE=3 SV=2
Length = 662
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 6/205 (2%)
Query: 115 DLQ-DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-- 171
DLQ DL G+LI+ + S + N +++ R+YS L+N + +LL+ QK
Sbjct: 456 DLQRQDLVNFGQLIVTLGANSPTVMH--NPTKAMEHFTRAYSPQLKNSVFWLLNGMQKDQ 513
Query: 172 -RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 514 DRNIDVFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMAKLNFVNERPEYEH 573
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT+EKI L+SRDEQ
Sbjct: 574 DRQWSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVITCLNKLDAGTEEKITLISRDEQ 633
Query: 291 SVLVVSYAELKQCLDQSFHELSSSA 315
S +VSY ELK+ L+ SF L A
Sbjct: 634 SCFIVSYKELKKALESSFQALMKPA 658
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 102/156 (65%), Gaps = 3/156 (1%)
Query: 325 LYLLSVHQK---RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
+LL+ QK R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL
Sbjct: 503 FWLLNGMQKDQDRNIDVFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMAKL 562
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
+NERPE D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT+
Sbjct: 563 NFVNERPEYEHDRQWSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVITCLNKLDAGTE 622
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSA 477
EKI L+SRDEQS +VSY ELK+ L+ SF L A
Sbjct: 623 EKITLISRDEQSCFIVSYKELKKALESSFQALMKPA 658
>sp|Q2KFH6|PAN3_MAGO7 PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAN3 PE=3 SV=1
Length = 680
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 130/198 (65%), Gaps = 5/198 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQ---KRT 173
++D A GKLI+++ + NL +I+ M R++S+ L++++L+LL+ Q ++T
Sbjct: 456 EEDFVAFGKLIVSLATNT--PPTGLNLGKAIEQMGRNHSSTLKDMVLWLLNPPQASGQKT 513
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
V +L+ I T DA Q D L +EL +E+ENGR+ RLL+KL TINER E + D
Sbjct: 514 VKNLVAGINEHVMTAFDAQQRQSDMLYSELYREVENGRVLRLLMKLATINERTEYDKDAG 573
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WSE GDRYMLKLFRDY+ HQV GRP LD H++ CL+KLD GT+E+I L SRD ++
Sbjct: 574 WSENGDRYMLKLFRDYVFHQVDAQGRPVLDPGHMLRCLSKLDVGTEERIKLTSRDCETDF 633
Query: 294 VVSYAELKQCLDQSFHEL 311
+V+Y +LK + +F EL
Sbjct: 634 LVTYKDLKGAVQSAFGEL 651
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 304 LDQSFHELSSSASLTPKSTLPLYLLSVHQ---KRTVVDLMPMIGARYYTQLDAVQLHGDS 360
L ++ ++ + S T K + L+LL+ Q ++TV +L+ I T DA Q D
Sbjct: 480 LGKAIEQMGRNHSSTLKDMV-LWLLNPPQASGQKTVKNLVAGINEHVMTAFDAQQRQSDM 538
Query: 361 LENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDG 420
L +EL +E+ENGR+ RLL+KL TINER E + D WSE GDRYMLKLFRDY+ HQV G
Sbjct: 539 LYSELYREVENGRVLRLLMKLATINERTEYDKDAGWSENGDRYMLKLFRDYVFHQVDAQG 598
Query: 421 RPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 473
RP LD H++ CL+KLD GT+E+I L SRD ++ +V+Y +LK + +F EL
Sbjct: 599 RPVLDPGHMLRCLSKLDVGTEERIKLTSRDCETDFLVTYKDLKGAVQSAFGEL 651
>sp|A1D1Y5|PAN3_NEOFI PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pan3 PE=3 SV=2
Length = 661
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 126/201 (62%), Gaps = 6/201 (2%)
Query: 115 DLQ-DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-- 171
DLQ DL G+LI+ + S + N +++ R+YS L+N + +LL+ QK
Sbjct: 455 DLQRQDLVNFGQLIVTLGANSPTVMH--NPTKAMEHFTRAYSPQLKNSVFWLLNGMQKDQ 512
Query: 172 -RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 513 DRNIDIFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKLNFVNERPEYEH 572
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT+EKI L+SRDEQ
Sbjct: 573 DRQWSENGERYFLKIFRDYVFHQVDVQGDPVVDLGHVISCLNKLDAGTEEKITLISRDEQ 632
Query: 291 SVLVVSYAELKQCLDQSFHEL 311
S +VSY ELK+ L+ SF L
Sbjct: 633 SCFIVSYKELKKALESSFQAL 653
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 325 LYLLSVHQK---RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
+LL+ QK R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL
Sbjct: 502 FWLLNGMQKDQDRNIDIFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKL 561
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
+NERPE D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT+
Sbjct: 562 NFVNERPEYEHDRQWSENGERYFLKIFRDYVFHQVDVQGDPVVDLGHVISCLNKLDAGTE 621
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 473
EKI L+SRDEQS +VSY ELK+ L+ SF L
Sbjct: 622 EKITLISRDEQSCFIVSYKELKKALESSFQAL 653
>sp|Q0D0A1|PAN3_ASPTN PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pan3 PE=3 SV=2
Length = 653
Score = 171 bits (434), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 126/201 (62%), Gaps = 6/201 (2%)
Query: 115 DLQ-DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-- 171
DLQ DL + G+LI+ + S + N +++ R+YS ++N + +LL+ QK
Sbjct: 447 DLQHQDLVSFGQLIVTLGANSPSVMH--NPTKAMEHFTRAYSPQMKNSVFWLLNSMQKDQ 504
Query: 172 -RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
T+ + I ++ + D+ D L ++LS+E+ENGRL RL+ KL INERPE
Sbjct: 505 DHTIDIFITGISSQLMSTFDSALHMDDQLTSDLSRELENGRLVRLMTKLNFINERPEYEH 564
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAG+ EKI L+SRDEQ
Sbjct: 565 DRQWSENGERYFLKIFRDYVFHQVDAHGDPVVDLGHVLACLNKLDAGSDEKITLVSRDEQ 624
Query: 291 SVLVVSYAELKQCLDQSFHEL 311
S +VSY E+K+ L+ SF L
Sbjct: 625 SCFIVSYKEIKKALESSFQAL 645
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 100/152 (65%), Gaps = 3/152 (1%)
Query: 325 LYLLSVHQK---RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
+LL+ QK T+ + I ++ + D+ D L ++LS+E+ENGRL RL+ KL
Sbjct: 494 FWLLNSMQKDQDHTIDIFITGISSQLMSTFDSALHMDDQLTSDLSRELENGRLVRLMTKL 553
Query: 382 GTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQ 441
INERPE D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAG+
Sbjct: 554 NFINERPEYEHDRQWSENGERYFLKIFRDYVFHQVDAHGDPVVDLGHVLACLNKLDAGSD 613
Query: 442 EKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 473
EKI L+SRDEQS +VSY E+K+ L+ SF L
Sbjct: 614 EKITLVSRDEQSCFIVSYKEIKKALESSFQAL 645
>sp|Q1E2S2|PAN3_COCIM PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Coccidioides immitis (strain RS) GN=PAN3 PE=3 SV=3
Length = 657
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 124/203 (61%), Gaps = 10/203 (4%)
Query: 115 DLQ-DDLTALGKLILAMTCRS--LMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK 171
DLQ DL G+LIL + S LM N + + RSYSA L N + +LLS QK
Sbjct: 452 DLQHQDLVNFGQLILTLGANSPSLM----HNPTKATEHFNRSYSAQLNNSVYWLLSGMQK 507
Query: 172 ---RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPEL 228
RT+ + I ++ + D+ D L ++LS+E+EN RL RLL KL INERPE
Sbjct: 508 DQERTIDIFISGISSQLMSTFDSSLHLDDQLISDLSRELENARLVRLLTKLNFINERPEY 567
Query: 229 NLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRD 288
D WSE G+RY LKLFRDY+ HQV P +D+ H++ CLNKLDAGT EK+ L+SRD
Sbjct: 568 EHDRQWSENGERYFLKLFRDYVFHQVDAQNAPVVDLGHVLTCLNKLDAGTDEKVTLISRD 627
Query: 289 EQSVLVVSYAELKQCLDQSFHEL 311
EQS +VSY ELK+ ++ SF L
Sbjct: 628 EQSCFIVSYKELKKAVEASFQAL 650
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 95/142 (66%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
Q+RT+ + I ++ + D+ D L ++LS+E+EN RL RLL KL INERPE
Sbjct: 509 QERTIDIFISGISSQLMSTFDSSLHLDDQLISDLSRELENARLVRLLTKLNFINERPEYE 568
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
D WSE G+RY LKLFRDY+ HQV P +D+ H++ CLNKLDAGT EK+ L+SRDE
Sbjct: 569 HDRQWSENGERYFLKLFRDYVFHQVDAQNAPVVDLGHVLTCLNKLDAGTDEKVTLISRDE 628
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
QS +VSY ELK+ ++ SF L
Sbjct: 629 QSCFIVSYKELKKAVEASFQAL 650
>sp|A2QAQ3|PAN3_ASPNC PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pan3 PE=3 SV=2
Length = 664
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 122/198 (61%), Gaps = 5/198 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK---RT 173
+ DL G+LI+ + + N +++ R+Y+A L+N + +LL+ QK R
Sbjct: 459 RQDLVNFGQLIVTLGANQPNVMH--NPTKAMEHFTRAYTAQLKNSVFWLLNGLQKDQERN 516
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
+ + I + + D+ D L ++LS+E+ENGRL RL+ KL +NERPE D
Sbjct: 517 IDIFITGISSTLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKLNFVNERPEYEHDRQ 576
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT EKI L+SRDEQS
Sbjct: 577 WSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVLMCLNKLDAGTDEKITLISRDEQSCF 636
Query: 294 VVSYAELKQCLDQSFHEL 311
VVSY ELK+ L+ SF L
Sbjct: 637 VVSYKELKKALESSFQAL 654
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
Q+R + + I + + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 513 QERNIDIFITGISSTLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKLNFVNERPEYE 572
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT EKI L+SRDE
Sbjct: 573 HDRQWSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVLMCLNKLDAGTDEKITLISRDE 632
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
QS VVSY ELK+ L+ SF L
Sbjct: 633 QSCFVVSYKELKKALESSFQAL 654
>sp|Q5BFB1|PAN3_EMENI PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pan3 PE=3 SV=3
Length = 661
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 6/201 (2%)
Query: 115 DLQ-DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-- 171
DLQ DL G+LIL + + N +++ R+YS L+N +++LL QK
Sbjct: 455 DLQRQDLVNFGQLILTLGANQPNVIH--NPSKAMEHFTRAYSPQLKNTVMWLLGGMQKDQ 512
Query: 172 -RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
R + L+ I ++ + D+ D L ++L +E+ENGRL RLL KL INERPE
Sbjct: 513 ERNIDILINGISSQLMSTFDSALHLDDQLTSDLGRELENGRLVRLLTKLNFINERPEHEH 572
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
D WSE G+R+ LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT E+I L+SRDEQ
Sbjct: 573 DRQWSENGERFYLKIFRDYVFHQVDASGDPVVDLGHVLTCLNKLDAGTDERITLVSRDEQ 632
Query: 291 SVLVVSYAELKQCLDQSFHEL 311
+ VVSY ELK+ L+ SF L
Sbjct: 633 TCFVVSYKELKKGLESSFQAL 653
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 96/142 (67%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
Q+R + L+ I ++ + D+ D L ++L +E+ENGRL RLL KL INERPE
Sbjct: 512 QERNIDILINGISSQLMSTFDSALHLDDQLTSDLGRELENGRLVRLLTKLNFINERPEHE 571
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
D WSE G+R+ LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT E+I L+SRDE
Sbjct: 572 HDRQWSENGERFYLKIFRDYVFHQVDASGDPVVDLGHVLTCLNKLDAGTDERITLVSRDE 631
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
Q+ VVSY ELK+ L+ SF L
Sbjct: 632 QTCFVVSYKELKKGLESSFQAL 653
>sp|Q2U0M4|PAN3_ASPOR PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pan3 PE=3 SV=2
Length = 662
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 123/198 (62%), Gaps = 5/198 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK---RT 173
+ DL G+LI+ + + + N +++ R+YS L+N + +LL+ QK R
Sbjct: 459 RQDLVNFGQLIVTLGANTPSVMH--NPTKAMEHFTRAYSPQLKNSVFWLLNGLQKDQDRN 516
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
+ + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE D
Sbjct: 517 IDIFITGISSQLMSTFDSALHLDDELTSDLSRELENGRLVRLVTKLNFVNERPEYEHDRQ 576
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT EKI L+SRDEQS
Sbjct: 577 WSENGERYFLKMFRDYVFHQVDAQGDPVVDLGHVLSCLNKLDAGTDEKITLVSRDEQSCF 636
Query: 294 VVSYAELKQCLDQSFHEL 311
VVSY ++K+ L+ SF L
Sbjct: 637 VVSYKDIKKALESSFQAL 654
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 95/142 (66%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
Q R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 513 QDRNIDIFITGISSQLMSTFDSALHLDDELTSDLSRELENGRLVRLVTKLNFVNERPEYE 572
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
D WSE G+RY LK+FRDY+ HQV G P +D+ H++ CLNKLDAGT EKI L+SRDE
Sbjct: 573 HDRQWSENGERYFLKMFRDYVFHQVDAQGDPVVDLGHVLSCLNKLDAGTDEKITLVSRDE 632
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
QS VVSY ++K+ L+ SF L
Sbjct: 633 QSCFVVSYKDIKKALESSFQAL 654
>sp|A1CP31|PAN3_ASPCL PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pan3 PE=3 SV=2
Length = 659
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 124/201 (61%), Gaps = 6/201 (2%)
Query: 115 DLQ-DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK-- 171
DLQ DL G+LI+ + S + N +++ R+YS ++N + +LL+ QK
Sbjct: 453 DLQRQDLVNFGQLIVTLGANSPTVMH--NPTKAMEHFTRAYSPQMKNSVFWLLNGLQKDQ 510
Query: 172 -RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 511 DRNIDIFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKLNLVNERPEYEH 570
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
D WSE G+RY LK+FRDY+ HQV G +D+ H++ CLNKLDAG+ EKI L+SRDEQ
Sbjct: 571 DRQWSENGERYFLKIFRDYVFHQVDAQGDAVVDLGHVLSCLNKLDAGSDEKITLVSRDEQ 630
Query: 291 SVLVVSYAELKQCLDQSFHEL 311
S +VSY ELK+ L+ SF L
Sbjct: 631 SCFIVSYKELKKALESSFQAL 651
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 94/142 (66%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
Q R + + I ++ + D+ D L ++LS+E+ENGRL RL+ KL +NERPE
Sbjct: 510 QDRNIDIFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMTKLNLVNERPEYE 569
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
D WSE G+RY LK+FRDY+ HQV G +D+ H++ CLNKLDAG+ EKI L+SRDE
Sbjct: 570 HDRQWSENGERYFLKIFRDYVFHQVDAQGDAVVDLGHVLSCLNKLDAGSDEKITLVSRDE 629
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
QS +VSY ELK+ L+ SF L
Sbjct: 630 QSCFIVSYKELKKALESSFQAL 651
>sp|Q6CBZ0|PAN3_YARLI PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PAN3
PE=3 SV=1
Length = 670
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 16/201 (7%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRT--- 173
Q DL LG L+L + C S+ A + N++ S+ + ++L+ ++ YLLS + +T
Sbjct: 479 QQDLRNLGLLVLCLACNSVEATK--NVEQSLTRL----DSELQEIVQYLLSSNTSKTASR 532
Query: 174 -VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERP--ELNL 230
+ L P++ A + L+ DSLE+EL +E+ENGRL RL+ KL I ERP + +
Sbjct: 533 VLASLTPLLTATFNESLNT----NDSLEHELRRELENGRLVRLMAKLNFITERPGPDPEM 588
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
WSETGDRY++KLFRDY+ HQ E G+P +D+ H+V LNKLDAG E+I L+SR+ Q
Sbjct: 589 SQQWSETGDRYLIKLFRDYVFHQQDEMGKPVMDLGHVVRTLNKLDAGIDERITLISRNGQ 648
Query: 291 SVLVVSYAELKQCLDQSFHEL 311
+ L+VS+ +LKQC++ + +L
Sbjct: 649 NCLIVSFKDLKQCIESALRDL 669
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 103/154 (66%), Gaps = 10/154 (6%)
Query: 326 YLLSVHQKRT----VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKL 381
YLLS + +T + L P++ A + L+ DSLE+EL +E+ENGRL RL+ KL
Sbjct: 520 YLLSSNTSKTASRVLASLTPLLTATFNESLNT----NDSLEHELRRELENGRLVRLMAKL 575
Query: 382 GTINERP--ELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAG 439
I ERP + + WSETGDRY++KLFRDY+ HQ E G+P +D+ H+V LNKLDAG
Sbjct: 576 NFITERPGPDPEMSQQWSETGDRYLIKLFRDYVFHQQDEMGKPVMDLGHVVRTLNKLDAG 635
Query: 440 TQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 473
E+I L+SR+ Q+ L+VS+ +LKQC++ + +L
Sbjct: 636 IDERITLISRNGQNCLIVSFKDLKQCIESALRDL 669
>sp|Q2H401|PAN3_CHAGB PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAN3 PE=3 SV=2
Length = 648
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVH---QKRT 173
Q+DL GKLILA+ + A N+Q ++D + YSA+L++ + +L++ + ++
Sbjct: 439 QEDLVKFGKLILALATGAPPA-HLNNIQVALDSLVTKYSANLKDAVAWLIAPSNPGESKS 497
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
+ + + I D GD + L++E+ENGR+ R ++KL TI ER E +
Sbjct: 498 IENFISGIATHMTAFFDLALQDGDEKQFHLARELENGRIARSMMKLMTIIERAEPGGAQS 557
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WSETG+RY LKLFRDY+ H+V+ DG+P L + H++ CL+KLDAG E + L SRD ++V
Sbjct: 558 WSETGERYQLKLFRDYVFHRVEADGKPNLAVGHMLSCLSKLDAGIDEMVVLTSRDNETVF 617
Query: 294 VVSYAELKQCLDQSFHEL 311
V+SY ELKQ D++F+EL
Sbjct: 618 VLSYRELKQMFDRAFNEL 635
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 93/142 (65%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
+ +++ + + I D GD + L++E+ENGR+ R ++KL TI ER E
Sbjct: 494 ESKSIENFISGIATHMTAFFDLALQDGDEKQFHLARELENGRIARSMMKLMTIIERAEPG 553
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
+WSETG+RY LKLFRDY+ H+V+ DG+P L + H++ CL+KLDAG E + L SRD
Sbjct: 554 GAQSWSETGERYQLKLFRDYVFHRVEADGKPNLAVGHMLSCLSKLDAGIDEMVVLTSRDN 613
Query: 452 QSVLVVSYAELKQCLDQSFHEL 473
++V V+SY ELKQ D++F+EL
Sbjct: 614 ETVFVLSYRELKQMFDRAFNEL 635
>sp|Q0V0I4|PAN3_PHANO PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAN3 PE=3 SV=2
Length = 669
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 30/221 (13%)
Query: 118 DDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLS---------- 167
DD LG++IL + + A +Q S+D + R+Y+A L+ I +LL+
Sbjct: 443 DDFVQLGRMILCIANNNTTA--HLQMQKSMDHVTRNYTARLKECIQWLLNPQPPLGTPSS 500
Query: 168 ----VHQKRTVVDLMPMIGARYYTQLDAVQLHG-DSLENELSKEMENGRLFRLLVKLGTI 222
+ + + + I + + D+ +LH D+L N L +E+E+ R+ RLLVKL +
Sbjct: 501 PTTPAPGSKDIDNFLGGISDQLASVFDS-ELHAQDTLTNTLGRELESSRIVRLLVKLNMV 559
Query: 223 NERPEL------------NLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHC 270
NERPEL N W+ETG+RY LKLFRDY+ HQV +G P D++H++ C
Sbjct: 560 NERPELDASQQMSGGNTSNPSSVWAETGERYYLKLFRDYVFHQVDANGHPVTDLAHVLDC 619
Query: 271 LNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 311
LNKLDAGT EKI L+SRDEQ+VL+VS+ E+K+ L+ +F +L
Sbjct: 620 LNKLDAGTDEKIALISRDEQNVLIVSFREVKRGLEIAFQDL 660
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 93/132 (70%), Gaps = 13/132 (9%)
Query: 355 QLHG-DSLENELSKEMENGRLFRLLVKLGTINERPEL------------NLDPTWSETGD 401
+LH D+L N L +E+E+ R+ RLLVKL +NERPEL N W+ETG+
Sbjct: 529 ELHAQDTLTNTLGRELESSRIVRLLVKLNMVNERPELDASQQMSGGNTSNPSSVWAETGE 588
Query: 402 RYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAE 461
RY LKLFRDY+ HQV +G P D++H++ CLNKLDAGT EKI L+SRDEQ+VL+VS+ E
Sbjct: 589 RYYLKLFRDYVFHQVDANGHPVTDLAHVLDCLNKLDAGTDEKIALISRDEQNVLIVSFRE 648
Query: 462 LKQCLDQSFHEL 473
+K+ L+ +F +L
Sbjct: 649 VKRGLEIAFQDL 660
>sp|Q75BU9|PAN3_ASHGO PAB-dependent poly(A)-specific ribonuclease subunit PAN3 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAN3 PE=3 SV=1
Length = 612
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 8/196 (4%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRTVVD 176
Q D +A+G L++ + R M R+ S+D+ + ++ YLLS +K+T+ +
Sbjct: 424 QADYSAVGALLMDLAQR--MLGTRDQPLDSMDI-----DPLFKRVLAYLLS-DEKKTIAE 475
Query: 177 LMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSE 236
+ + + + Q + + +E LS+E+ENGRLFRL+ KL I R E ++D WSE
Sbjct: 476 FTALFSHKMLDIISSSQTYSEYIEQHLSRELENGRLFRLMCKLNFIFGRMESSMDIHWSE 535
Query: 237 TGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVS 296
GD++ + LF DY+ HQV E+G+ +D++H++ CLNKLD G EKI L++ DE + +++S
Sbjct: 536 AGDKFPIILFYDYVFHQVDENGKSVMDLTHVLRCLNKLDTGVSEKIILVTPDEMNCIIIS 595
Query: 297 YAELKQCLDQSFHELS 312
Y ELK +D +F ++
Sbjct: 596 YKELKDSIDSTFRSMT 611
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 326 YLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTIN 385
YLLS +K+T+ + + + + + Q + + +E LS+E+ENGRLFRL+ KL I
Sbjct: 464 YLLS-DEKKTIAEFTALFSHKMLDIISSSQTYSEYIEQHLSRELENGRLFRLMCKLNFIF 522
Query: 386 ERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKIC 445
R E ++D WSE GD++ + LF DY+ HQV E+G+ +D++H++ CLNKLD G EKI
Sbjct: 523 GRMESSMDIHWSEAGDKFPIILFYDYVFHQVDENGKSVMDLTHVLRCLNKLDTGVSEKII 582
Query: 446 LMSRDEQSVLVVSYAELKQCLDQSFHELS 474
L++ DE + +++SY ELK +D +F ++
Sbjct: 583 LVTPDEMNCIIISYKELKDSIDSTFRSMT 611
>sp|Q7SDP4|PAN3_NEUCR PAB-dependent poly(A)-specific ribonuclease subunit pan-3
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pan-3 PE=3 SV=2
Length = 656
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 118/202 (58%), Gaps = 4/202 (1%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLL---SVHQKRT 173
Q+D G++ILA+ + + N+ ++ + YS LR ++ +L+ + + +T
Sbjct: 447 QEDFVKFGRIILALATNT-PTLNFNNIDAALATIVPRYSTQLRGVLEWLIKPSAPGETKT 505
Query: 174 VVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT 233
V L+ I + V D E L +E+ENGR+ RL+ KL +NER +
Sbjct: 506 VETLLGGITTHLANFANFVMQESDEKEFHLMRELENGRIARLMFKLSVVNERGDSCGVHN 565
Query: 234 WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL 293
WSETG+R +LKLFRDY+ HQV DG+ LD +H ++CL+KLDA ++E+I L SRD +V
Sbjct: 566 WSETGERLLLKLFRDYVFHQVDADGKARLDTNHYLNCLSKLDASSEEQILLTSRDNATVF 625
Query: 294 VVSYAELKQCLDQSFHELSSSA 315
VVSY ++Q LD+++ EL +
Sbjct: 626 VVSYRSIRQMLDRAYGELGKES 647
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 91/146 (62%)
Query: 332 QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELN 391
+ +TV L+ I + V D E L +E+ENGR+ RL+ KL +NER +
Sbjct: 502 ETKTVETLLGGITTHLANFANFVMQESDEKEFHLMRELENGRIARLMFKLSVVNERGDSC 561
Query: 392 LDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDE 451
WSETG+R +LKLFRDY+ HQV DG+ LD +H ++CL+KLDA ++E+I L SRD
Sbjct: 562 GVHNWSETGERLLLKLFRDYVFHQVDADGKARLDTNHYLNCLSKLDASSEEQILLTSRDN 621
Query: 452 QSVLVVSYAELKQCLDQSFHELSSSA 477
+V VVSY ++Q LD+++ EL +
Sbjct: 622 ATVFVVSYRSIRQMLDRAYGELGKES 647
>sp|P36102|PAN3_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAN3 PE=1 SV=1
Length = 679
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 146 SIDLMARSYSADLRNLILYLLSVH--QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENEL 203
SID M R ++++ YL+S + K+++ DL + + L++ Q + + +E+ L
Sbjct: 511 SIDDM-RQIDDKFKDVLKYLISDNGDSKKSIHDLTSHFYDKMFMVLESSQTYTEYMESVL 569
Query: 204 SKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLD 263
S+E+ENGRLFRL+ KL I R E +D WSE+G ++ + LF DY+ HQV +G+P +D
Sbjct: 570 SRELENGRLFRLVNKLNCIFGRIESRIDINWSESGTKFPIILFYDYVFHQVDSNGKPIMD 629
Query: 264 MSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELS 312
++H++ CLNKLDAG QEK+ L++ DE + +++SY ELK ++ +F ++
Sbjct: 630 LTHVLRCLNKLDAGIQEKLMLVTPDELNCIIISYKELKDLIESTFRSIT 678
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Query: 326 YLLSVH--QKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGT 383
YL+S + K+++ DL + + L++ Q + + +E+ LS+E+ENGRLFRL+ KL
Sbjct: 528 YLISDNGDSKKSIHDLTSHFYDKMFMVLESSQTYTEYMESVLSRELENGRLFRLVNKLNC 587
Query: 384 INERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEK 443
I R E +D WSE+G ++ + LF DY+ HQV +G+P +D++H++ CLNKLDAG QEK
Sbjct: 588 IFGRIESRIDINWSESGTKFPIILFYDYVFHQVDSNGKPIMDLTHVLRCLNKLDAGIQEK 647
Query: 444 ICLMSRDEQSVLVVSYAELKQCLDQSFHELS 474
+ L++ DE + +++SY ELK ++ +F ++
Sbjct: 648 LMLVTPDELNCIIISYKELKDLIESTFRSIT 678
>sp|Q6BRV5|PAN3_DEBHA PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAN3 PE=3 SV=2
Length = 660
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 7/205 (3%)
Query: 114 HDLQD-DLTALGKLILAMTCRSLMAVQRENLQTS-IDLMARSYSADLRNLILYLLSVHQK 171
H+LQ D+ GKLIL + L R + I L+ S + + + LL+
Sbjct: 455 HELQQADIKKFGKLILDLAALCLPNNARNHEPKDLISLLKTSTTVNFSGEFINLLTELNM 514
Query: 172 RTVVDLMPM----IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPE 227
T DL + R Q D +E++LS E+EN R+FRL+ KL I +RPE
Sbjct: 515 NTS-DLQEFNRNHLSRRILNFCSNAQDSQDFMESQLSTELENARVFRLITKLNFIIDRPE 573
Query: 228 LNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSR 287
+ DP W E G++Y++KLFRDY+ Q E G+P D+S ++ LNKLDAG EK L+++
Sbjct: 574 YDNDPNWQENGNKYIIKLFRDYIFFQYDEFGKPVCDLSRVLTNLNKLDAGIDEKFLLVNK 633
Query: 288 DEQSVLVVSYAELKQCLDQSFHELS 312
DE++ ++VSY E++ +D +F L+
Sbjct: 634 DEKNCIIVSYKEIRDIIDSAFRTLT 658
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 83/116 (71%)
Query: 359 DSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQE 418
D +E++LS E+EN R+FRL+ KL I +RPE + DP W E G++Y++KLFRDY+ Q E
Sbjct: 543 DFMESQLSTELENARVFRLITKLNFIIDRPEYDNDPNWQENGNKYIIKLFRDYIFFQYDE 602
Query: 419 DGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELS 474
G+P D+S ++ LNKLDAG EK L+++DE++ ++VSY E++ +D +F L+
Sbjct: 603 FGKPVCDLSRVLTNLNKLDAGIDEKFLLVNKDEKNCIIVSYKEIRDIIDSAFRTLT 658
>sp|Q6FKP2|PAN3_CANGA PAB-dependent poly(A)-specific ribonuclease subunit PAN3 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAN3 PE=3 SV=1
Length = 717
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 11/166 (6%)
Query: 155 SADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAV-------QLHGDSLENELSKEM 207
S L+NLI L + Q V++ +I Y LD V Q + + EN LS+E+
Sbjct: 554 SEKLKNLIKSL-AFEQLHDYVNVATII--EKYIGLDVVFKVMEAQQTYSEYAENVLSREL 610
Query: 208 ENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQED-GRPWLDMSH 266
ENGRLFRL+ KL I R E LD WSE GD++++ LF DY+ HQ+ + G+P D++H
Sbjct: 611 ENGRLFRLICKLNFIFGRVENRLDINWSEPGDKFVIVLFYDYVFHQIDPNTGKPVTDLTH 670
Query: 267 IVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELS 312
++ CLNKLDAG +E I L++ DE + VVSY ++K+ +D++F ++
Sbjct: 671 VLRCLNKLDAGVEENILLVTPDELNTAVVSYKKVKELVDKTFRAMT 716
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Query: 348 YTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKL 407
+ ++A Q + + EN LS+E+ENGRLFRL+ KL I R E LD WSE GD++++ L
Sbjct: 589 FKVMEAQQTYSEYAENVLSRELENGRLFRLICKLNFIFGRVENRLDINWSEPGDKFVIVL 648
Query: 408 FRDYLLHQVQED-GRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCL 466
F DY+ HQ+ + G+P D++H++ CLNKLDAG +E I L++ DE + VVSY ++K+ +
Sbjct: 649 FYDYVFHQIDPNTGKPVTDLTHVLRCLNKLDAGVEENILLVTPDELNTAVVSYKKVKELV 708
Query: 467 DQSFHELS 474
D++F ++
Sbjct: 709 DKTFRAMT 716
>sp|A3LQL9|PAN3_PICST PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAN3 PE=3 SV=2
Length = 630
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 117 QDDLTALGKLILAMTCRSLMAVQRENLQTSI-DLMARSYSADLRNLILYLLSVHQKRTVV 175
++D+ LG+++L+++ ++ R N + + S + + + +L+V + TV
Sbjct: 430 REDIKKLGRILLSLSTLTIPNTLRNNDTGELLRHLKTSSTISFSDEFIQVLTVLNEDTVE 489
Query: 176 DLMPMIGARY-----YTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNL 230
+ RY ++ ++ ++ D +E++++ E+EN RLFRLL KL I +RPE
Sbjct: 490 FDLDRFSQRYLTTRLFSTINNLEDSTDFMESQITTELENARLFRLLTKLNFIIDRPEAK- 548
Query: 231 DPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQ 290
W+E ++Y++KLFRDY+ Q E G+P +D+S ++ LNKLDAG EK L+SRDE+
Sbjct: 549 --DWTENSNKYIIKLFRDYIFFQHDEYGKPVVDLSRVLTNLNKLDAGIDEKFLLVSRDEK 606
Query: 291 SVLVVSYAELKQCLDQSFHELS 312
+ ++VSY E++ +D F L+
Sbjct: 607 NCIIVSYKEIRDTIDSVFRNLT 628
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 88/132 (66%), Gaps = 3/132 (2%)
Query: 343 IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDR 402
+ R ++ ++ ++ D +E++++ E+EN RLFRLL KL I +RPE W+E ++
Sbjct: 500 LTTRLFSTINNLEDSTDFMESQITTELENARLFRLLTKLNFIIDRPEAK---DWTENSNK 556
Query: 403 YMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAEL 462
Y++KLFRDY+ Q E G+P +D+S ++ LNKLDAG EK L+SRDE++ ++VSY E+
Sbjct: 557 YIIKLFRDYIFFQHDEYGKPVVDLSRVLTNLNKLDAGIDEKFLLVSRDEKNCIIVSYKEI 616
Query: 463 KQCLDQSFHELS 474
+ +D F L+
Sbjct: 617 RDTIDSVFRNLT 628
>sp|Q6CP23|PAN3_KLULA PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAN3 PE=3
SV=1
Length = 656
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Query: 151 ARSYSAD--LRNLILYLL-SVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEM 207
+SY D + I YL + + + + D + + + ++++Q + + LE +LS+E+
Sbjct: 491 VKSYHIDPLFKKCIQYLQDTSNNNKNIEDFTKLFSHKVLSVVNSLQYNSEYLEQQLSREL 550
Query: 208 ENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHI 267
EN RLFRL+ KL I R E +D W+E+G+++ + LF DY+ HQ + G+ +D++H+
Sbjct: 551 ENARLFRLMCKLNAIYGRLESRIDINWAESGEKFPIILFFDYVFHQKDDTGKNVMDLTHV 610
Query: 268 VHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELS 312
+ CLNKLDAG E++ L++ DE + +++SY ELK +D +F L+
Sbjct: 611 LRCLNKLDAGVSERLMLVTPDEMNCIIISYKELKDLIDSTFRALT 655
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 94/144 (65%)
Query: 331 HQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPEL 390
+ + + D + + + ++++Q + + LE +LS+E+EN RLFRL+ KL I R E
Sbjct: 512 NNNKNIEDFTKLFSHKVLSVVNSLQYNSEYLEQQLSRELENARLFRLMCKLNAIYGRLES 571
Query: 391 NLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRD 450
+D W+E+G+++ + LF DY+ HQ + G+ +D++H++ CLNKLDAG E++ L++ D
Sbjct: 572 RIDINWAESGEKFPIILFFDYVFHQKDDTGKNVMDLTHVLRCLNKLDAGVSERLMLVTPD 631
Query: 451 EQSVLVVSYAELKQCLDQSFHELS 474
E + +++SY ELK +D +F L+
Sbjct: 632 EMNCIIISYKELKDLIDSTFRALT 655
>sp|A5DCP8|PAN3_PICGU PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAN3
PE=3 SV=2
Length = 620
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 17/214 (7%)
Query: 106 LPLEVDNYHDLQDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILY- 164
LP ++N Q+D+ + +L++ +T VQ + + ++ + A +++L
Sbjct: 414 LPTYMENLQ--QEDIRNMARLMVDLTTVMNPVVQNDIFKLKSSGLSTDFVAAVQDLSNTD 471
Query: 165 -LLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTIN 223
L S +K + L+ ++ D ++ D LE++LS E+EN RL RL+ K+ I
Sbjct: 472 DLESYIRKHLAIRLLDVV--------DMLEDSNDYLESQLSTELENARLVRLMTKINFIV 523
Query: 224 ERPELNLDPT-----WSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGT 278
+RPE + + T W+E G +Y+LKLFRD++ Q E G+P D+S ++ LNKLDAG
Sbjct: 524 DRPEWDNEATAAAAGWTENGPKYLLKLFRDFVFFQTDEMGKPVTDLSRVLVTLNKLDAGI 583
Query: 279 QEKICLMSRDEQSVLVVSYAELKQCLDQSFHELS 312
EK L+SRDE++ +VVSY E++ L+ F ++
Sbjct: 584 DEKFLLVSRDEKTCIVVSYKEIRDLLESVFRTIT 617
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 85/129 (65%), Gaps = 5/129 (3%)
Query: 351 LDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPT-----WSETGDRYML 405
+D ++ D LE++LS E+EN RL RL+ K+ I +RPE + + T W+E G +Y+L
Sbjct: 489 VDMLEDSNDYLESQLSTELENARLVRLMTKINFIVDRPEWDNEATAAAAGWTENGPKYLL 548
Query: 406 KLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQC 465
KLFRD++ Q E G+P D+S ++ LNKLDAG EK L+SRDE++ +VVSY E++
Sbjct: 549 KLFRDFVFFQTDEMGKPVTDLSRVLVTLNKLDAGIDEKFLLVSRDEKTCIVVSYKEIRDL 608
Query: 466 LDQSFHELS 474
L+ F ++
Sbjct: 609 LESVFRTIT 617
>sp|O13865|PAN3L_SCHPO PAB-dependent poly(A)-specific ribonuclease subunit pan3-like
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1B1.04c PE=1 SV=2
Length = 681
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 153 SYSADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRL 212
S A L LI L+ + R + L+P + + ++V L D E L++++EN RL
Sbjct: 500 STDASLVELIEVLIFNEELR-IQTLLPTMLSYMVNNYESVLLMEDVYETYLAEQVENDRL 558
Query: 213 FRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLH-QVQEDG------------- 258
RLL+KL +++RPE DP WS +G ++++LFR Y+ Q +D
Sbjct: 559 LRLLLKLEFLDDRPEYVDDPDWSASGVYFVIRLFRKYMFQVQTIDDASKKPTLQSTTTPP 618
Query: 259 RPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 311
R L+ +H++ CLNKLDAGT E+I L DE + +++S+ E+K ++ +F EL
Sbjct: 619 RKLLNKAHLLSCLNKLDAGTDEQILL--EDEFTRIIMSFKEVKTTINTAFMEL 669
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 16/161 (9%)
Query: 327 LLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINE 386
+L +++ + L+P + + ++V L D E L++++EN RL RLL+KL +++
Sbjct: 511 VLIFNEELRIQTLLPTMLSYMVNNYESVLLMEDVYETYLAEQVENDRLLRLLLKLEFLDD 570
Query: 387 RPELNLDPTWSETGDRYMLKLFRDYLLH-QVQEDG-------------RPWLDMSHIVHC 432
RPE DP WS +G ++++LFR Y+ Q +D R L+ +H++ C
Sbjct: 571 RPEYVDDPDWSASGVYFVIRLFRKYMFQVQTIDDASKKPTLQSTTTPPRKLLNKAHLLSC 630
Query: 433 LNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 473
LNKLDAGT E+I L DE + +++S+ E+K ++ +F EL
Sbjct: 631 LNKLDAGTDEQILL--EDEFTRIIMSFKEVKTTINTAFMEL 669
>sp|Q9UST1|PAN3_SCHPO PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ppk26 PE=3 SV=1
Length = 589
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 7/194 (3%)
Query: 117 QDDLTALGKLILAM-TCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLS-VHQKRTV 174
+ D LG +I + T R+ M ++ ++ + +YS + +LY +S V + + +
Sbjct: 395 KQDFVDLGVVIANLATGRTDM-----DMSSAARAIYSTYSREFYKAVLYFVSEVPEDKNL 449
Query: 175 VDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTW 234
+ ++ + + + + +E ++S ++GR F +L K+ I + + +
Sbjct: 450 ELFLQNHIESFFPIMSSPYVECEKMERKISDAFQHGRFFNILCKIMFIIDNNRASREYPI 509
Query: 235 SETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLV 294
+ + ++ L RDYL HQ+ ED P +D+ +++ L KLDAG + I L+SRDE +
Sbjct: 510 AREKEISLIYLLRDYLFHQIDEDECPVIDLYQVLNRLGKLDAGINQAIALISRDELDCVS 569
Query: 295 VSYAELKQCLDQSF 308
VSY ELK LD +
Sbjct: 570 VSYGELKAWLDNVY 583
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 69/124 (55%)
Query: 347 YYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLK 406
++ + + + + +E ++S ++GR F +L K+ I + + + + + ++
Sbjct: 460 FFPIMSSPYVECEKMERKISDAFQHGRFFNILCKIMFIIDNNRASREYPIAREKEISLIY 519
Query: 407 LFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCL 466
L RDYL HQ+ ED P +D+ +++ L KLDAG + I L+SRDE + VSY ELK L
Sbjct: 520 LLRDYLFHQIDEDECPVIDLYQVLNRLGKLDAGINQAIALISRDELDCVSVSYGELKAWL 579
Query: 467 DQSF 470
D +
Sbjct: 580 DNVY 583
>sp|A5E2Y4|PAN3_LODEL PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAN3 PE=3
SV=1
Length = 794
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Query: 145 TSIDLMARSYSADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELS 204
T L+ YS D+ IL +S H + T ++ +Q D +E +LS
Sbjct: 646 TDPSLLQEPYSFDMDQFILQYISSH---------------FMTLMNKLQNSHDWVELQLS 690
Query: 205 KEMENGRLFRLLVKLG-TINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLD 263
E+EN RLFRL+ K+ I+E P +L+ ++K+F++ L + V +G+ ++
Sbjct: 691 TELENARLFRLMTKINFIISEMPTYDLN----SQNRLKIIKVFQENLFNSVGPNGKKVVN 746
Query: 264 MSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHEL 311
M ++ LNKLD G EK L+S E +++++ E+K+ +D F L
Sbjct: 747 MDRVLVNLNKLDCGIDEKTLLISDKE--CMIITFKEIKELIDTQFRLL 792
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 339 LMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLG-TINERPELNLDPTWS 397
++ I + + T ++ +Q D +E +LS E+EN RLFRL+ K+ I+E P +L+
Sbjct: 663 ILQYISSHFMTLMNKLQNSHDWVELQLSTELENARLFRLMTKINFIISEMPTYDLN---- 718
Query: 398 ETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVV 457
++K+F++ L + V +G+ ++M ++ LNKLD G EK L+S E +++
Sbjct: 719 SQNRLKIIKVFQENLFNSVGPNGKKVVNMDRVLVNLNKLDCGIDEKTLLISDKE--CMII 776
Query: 458 SYAELKQCLDQSFHEL 473
++ E+K+ +D F L
Sbjct: 777 TFKEIKELIDTQFRLL 792
>sp|Q5AK10|PAN3_CANAL PAB-dependent poly(A)-specific ribonuclease subunit PAN3 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAN3 PE=3
SV=1
Length = 698
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 184 RYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYML 243
+ + +D++Q D +E +L+ E+EN RLFRL+ KL L S + + ++
Sbjct: 579 KMFNIIDSLQNSSDFIEGQLTSELENARLFRLMTKLNY--------LIHDNSNSENDKII 630
Query: 244 KLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQC 303
KLF +Y+ + + + ++++ ++ LNKLD G EKI L++ DE +++SY ELK+
Sbjct: 631 KLFLNYVYNCYDSNNKKVINLNKVLINLNKLDCGIDEKILLVNNDE--CIIISYKELKEI 688
Query: 304 LDQSF 308
+D F
Sbjct: 689 IDTKF 693
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 346 RYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYML 405
+ + +D++Q D +E +L+ E+EN RLFRL+ KL L S + + ++
Sbjct: 579 KMFNIIDSLQNSSDFIEGQLTSELENARLFRLMTKLNY--------LIHDNSNSENDKII 630
Query: 406 KLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQC 465
KLF +Y+ + + + ++++ ++ LNKLD G EKI L++ DE +++SY ELK+
Sbjct: 631 KLFLNYVYNCYDSNNKKVINLNKVLINLNKLDCGIDEKILLVNNDE--CIIISYKELKEI 688
Query: 466 LDQSF 470
+D F
Sbjct: 689 IDTKF 693
>sp|Q2J4A0|YIDD_FRASC Putative membrane protein insertion efficiency factor OS=Frankia
sp. (strain CcI3) GN=Francci3_4546 PE=3 SV=2
Length = 152
Score = 38.1 bits (87), Expect = 0.18, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 29 PGAAG---PAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATVD----HSSFYMSE 81
P AAG P PG D PG++ P G T PG PP R A V H S+
Sbjct: 79 PLAAGGYDPVPGTD-PGPGIVRRPRGATADPGGPPDGRSAGDPAVAVPPVHRHGPPSPSQ 137
Query: 82 NIRAEI 87
+RAEI
Sbjct: 138 GMRAEI 143
>sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo
sapiens GN=SAMD9L PE=1 SV=2
Length = 1584
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 35 APGDDLSAPGVL-SSPPGYTMHPGTPPHVRHKPPNA--ATVDH-----------SSFYMS 80
+P D PG L +S P T H P H + + N+ + +D+ S M
Sbjct: 79 SPESDNHDPGQLDNSKPSKTEHQKNPKHTKKEEENSMSSNIDYDPREIRDIKQEESILMK 138
Query: 81 ENIRAEIQHKNALTLVSANPELFPELPLEVDNYHD 115
EN+ E+ + PE +P D +HD
Sbjct: 139 ENVLDEVANAKHKKKGKLKPEQLTCMPYPFDQFHD 173
>sp|P06451|ATPI_SPIOL ATP synthase subunit a, chloroplastic OS=Spinacia oleracea GN=atpI
PE=1 SV=1
Length = 247
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 181 IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDR 240
+G +Y Q+ Q+HG L + + + +L+ I R + PT +
Sbjct: 22 VGQHFYWQIGGFQIHGQVL-------ITSWVVIAILLGSAAIAVRSPQTI-PTGGQNFFE 73
Query: 241 YMLKLFRDYLLHQVQEDGRPWL 262
Y+L+ RD Q+ E+ RPW+
Sbjct: 74 YVLEFIRDVSKTQIGEEYRPWV 95
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 343 IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDR 402
+G +Y Q+ Q+HG L + + + +L+ I R + PT +
Sbjct: 22 VGQHFYWQIGGFQIHGQVL-------ITSWVVIAILLGSAAIAVRSPQTI-PTGGQNFFE 73
Query: 403 YMLKLFRDYLLHQVQEDGRPWL 424
Y+L+ RD Q+ E+ RPW+
Sbjct: 74 YVLEFIRDVSKTQIGEEYRPWV 95
>sp|Q99234|DFG16_YEAST Protein DFG16 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DFG16 PE=1 SV=1
Length = 619
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 30 GAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATVDH 74
GA A + P ++ PPG+ + PPH H+PP +D+
Sbjct: 21 GAYEKAARKRIQPPDLIPGPPGHKLGDERPPHYDHRPPYKKHIDN 65
>sp|B2XWN7|ATPI_FAGEA ATP synthase subunit a, chloroplastic OS=Fagopyrum esculentum
subsp. ancestrale GN=atpI PE=3 SV=1
Length = 247
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 167 SVHQKRTVVDLMPM-IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINER 225
S++ R + D+ + +G +Y Q+ Q+HG L + + + +L+ I R
Sbjct: 7 SINTLRGLYDISGVEVGQHFYWQIGGFQVHGQVL-------ITSWVVIAILLSSAAIAVR 59
Query: 226 PELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWL 262
+ PT + Y+L+ RD Q+ E+ RPW+
Sbjct: 60 NPQTI-PTDGQNFFEYVLEFIRDVSKTQIGEEYRPWV 95
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 329 SVHQKRTVVDLMPM-IGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINER 387
S++ R + D+ + +G +Y Q+ Q+HG L + + + +L+ I R
Sbjct: 7 SINTLRGLYDISGVEVGQHFYWQIGGFQVHGQVL-------ITSWVVIAILLSSAAIAVR 59
Query: 388 PELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWL 424
+ PT + Y+L+ RD Q+ E+ RPW+
Sbjct: 60 NPQTI-PTDGQNFFEYVLEFIRDVSKTQIGEEYRPWV 95
>sp|Q58195|Y785_METJA Uncharacterized protein MJ0785 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0785 PE=4 SV=1
Length = 375
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 184 RYYTQLDAVQLHGD-----SLENELSKEMENGRLFRLLVKLGTINERPELNLDP--TWSE 236
+Y ++ V++ GD +E E + +E+ R + +K G I+E L L W
Sbjct: 2 KYTYKISKVKISGDLMVFGKIEEEFKEFLESRRKYNEFIKNGLIDEDEALKLFKIDNW-- 59
Query: 237 TGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVS 296
R LKLF + +V++ + ++++ +H N + CL
Sbjct: 60 ---RDYLKLFD--IASRVRDYFKKKIEITSTIHITNICHVNPK---CLYCGFAAGTSKEG 111
Query: 297 YAELKQCLDQSFHELSSSASLTPKSTLPLYLLSV---HQKRTVVDLMPMIGARYYTQLDA 353
Y E + D+ E+ SA +S + S +Q + V+ + ++ + YT L+
Sbjct: 112 YYEPFRLTDE---EIKKSAIAIEESGIKRVSCSSAHGYQGKEVIRALKIV--KKYTNLEV 166
Query: 354 VQLHGDSLENELSKEMENGRLFRLLVKLGTINE 386
+ G L E KE++ + + L TINE
Sbjct: 167 LVNAGADLTEESIKELKKYGIDTICCNLETINE 199
>sp|A6NI79|CCD69_HUMAN Coiled-coil domain-containing protein 69 OS=Homo sapiens GN=CCDC69
PE=2 SV=1
Length = 296
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 218 KLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAG 277
+LG +N + + SE +R+ + R +L Q +E+ + W L D
Sbjct: 33 ELGPLNGDTAITVQLCASEEAERHQKDITR--ILQQHEEEKKKWAQQVEKERELELRDRL 90
Query: 278 TQEKICLMSRDEQS--VLVVSYAELKQCLDQSFHELSSSASLT 318
+++ L ++E++ VL SY + K+ L SF E SS+ T
Sbjct: 91 DEQQRVLEGKNEEALQVLRASYEQEKEALTHSFREASSTQQET 133
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 380 KLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAG 439
+LG +N + + SE +R+ + R +L Q +E+ + W L D
Sbjct: 33 ELGPLNGDTAITVQLCASEEAERHQKDITR--ILQQHEEEKKKWAQQVEKERELELRDRL 90
Query: 440 TQEKICLMSRDEQS--VLVVSYAELKQCLDQSFHELSSSASLT 480
+++ L ++E++ VL SY + K+ L SF E SS+ T
Sbjct: 91 DEQQRVLEGKNEEALQVLRASYEQEKEALTHSFREASSTQQET 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,732,323
Number of Sequences: 539616
Number of extensions: 7890524
Number of successful extensions: 22373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 22072
Number of HSP's gapped (non-prelim): 275
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)