RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1282
(487 letters)
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor.
Length = 236
Score = 31.9 bits (72), Expect = 0.59
Identities = 21/87 (24%), Positives = 27/87 (31%)
Query: 21 APSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATVDHSSFYMS 80
A +SG P AA A L A G+ PP Y P A T ++
Sbjct: 143 AAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLSTFNPGATATAYGAMTEGFAAPPHP 202
Query: 81 ENIRAEIQHKNALTLVSANPELFPELP 107
L + P+ PE P
Sbjct: 203 HANPPGAVGPPRLQALKDEPQTVPEAP 229
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family
domain in BacillopeptidaseF-like proteins. Bacillus
subtilis produces and secretes proteases and other types
of exoenzymes at the end of the exponential phase of
growth. The ones that make up this group is known as
bacillopeptidase F, encoded by bpr, a serine protease
with high esterolytic activity which is inhibited by
PMSF. Like other members of the peptidases S8 family
these have a Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of these enzymes may be enhanced
by calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity.
Length = 264
Score = 32.0 bits (73), Expect = 0.64
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 37/81 (45%)
Query: 33 GPAPGD----DLSAPGV--LSSPPG--YTMHPGTP---PHVRHKPPNAATVDHSSFYMSE 81
GP+ D+SAPGV S+ PG Y GT PHV A
Sbjct: 194 GPSTYGRIKPDISAPGVNIRSAVPGGGYGSSSGTSMAAPHV------AGVA--------- 238
Query: 82 NIRAEIQHKNALTLVSANPEL 102
AL L SANP L
Sbjct: 239 ----------AL-LWSANPSL 248
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 20 QAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPP 67
P GP P + PGV +PP + G + PP
Sbjct: 59 LPAYGQYAAPPPYGPPPPYYPAPPGVYPTPP--PPNSGYMADPQEPPP 104
>gnl|CDD|114410 pfam05684, DUF819, Protein of unknown function (DUF819). This
family contains proteins of unknown function from
archaeal, bacterial and plant species.
Length = 379
Score = 30.8 bits (70), Expect = 1.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 1 MKYIILCSQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTM 54
+ ++L S N GG P+S + A G + L+ PGVL GY +
Sbjct: 322 LFLLLLASNANIGG-------PTSAPVMATAKGRS----LAPPGVLMGTLGYAI 364
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 30.7 bits (68), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 21 APSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHP----GTPPHVRHKPPNAA 70
P+ P A AP +AP ++PP P TPP PP A
Sbjct: 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.7 bits (69), Expect = 2.5
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 20 QAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATV 72
+P+ P +A P P S P G ++ PG VR +PP+ +
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD--VRRRPPSRSPA 2872
>gnl|CDD|226193 COG3667, PcoB, Uncharacterized protein involved in copper
resistance [Inorganic ion transport and metabolism].
Length = 321
Score = 29.5 bits (66), Expect = 3.7
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 15/57 (26%)
Query: 21 APSSGTEV------PGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAAT 71
AP A PG +++AP M G PH+ H PP T
Sbjct: 38 APMDAPHPAMPGMDHHAHSKMPGPEMAAPQ---------MDHGAMPHMDHAPPPIPT 85
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 29.2 bits (66), Expect = 4.7
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 13 GGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPG--VLSSPPG-----YTMHPGTP---PHV 62
G T G P D+ APG +LSS PG Y H GT P V
Sbjct: 169 GAVTENGTIADFSNYGGPVDGIKP--DIVAPGGNILSSGPGGDLGGYDSHSGTSMAAPLV 226
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 29.8 bits (67), Expect = 4.8
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 21 APSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTP--PHVRHKPPNAAT 71
+ SS +E A +PG S S PP P P + A
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380
>gnl|CDD|225548 COG3002, COG3002, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 880
Score = 29.5 bits (66), Expect = 5.7
Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 197 DSLENELSKEMENGR--LFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQV 254
D +E L + + + T++ R +L ++ + ++K + YL H
Sbjct: 120 DLVEKLLIEASQQPTDPSENWPLLCDTVSSRIDLEHGEALNDAVNHQIIKWSKLYLDHHQ 179
Query: 255 -------QEDG--RPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL--VVSYAELKQC 303
+E+G R W +++ LNK ++K + D ++ + ++ + +
Sbjct: 180 ADWTMPDREEGFFRAWRELAQHDLLLNK--TQVRQKAKGLPEDAEAAIEQTLAQLAIPEE 237
Query: 304 LDQSFHEL 311
+++ E
Sbjct: 238 QQETYLEG 245
Score = 29.5 bits (66), Expect = 5.7
Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 359 DSLENELSKEMENGR--LFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQV 416
D +E L + + + T++ R +L ++ + ++K + YL H
Sbjct: 120 DLVEKLLIEASQQPTDPSENWPLLCDTVSSRIDLEHGEALNDAVNHQIIKWSKLYLDHHQ 179
Query: 417 -------QEDG--RPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVL--VVSYAELKQC 465
+E+G R W +++ LNK ++K + D ++ + ++ + +
Sbjct: 180 ADWTMPDREEGFFRAWRELAQHDLLLNK--TQVRQKAKGLPEDAEAAIEQTLAQLAIPEE 237
Query: 466 LDQSFHEL 473
+++ E
Sbjct: 238 QQETYLEG 245
>gnl|CDD|221384 pfam12027, DUF3514, Protein of unknown function (DUF3514). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 368 to 823 amino acids in length.
Length = 255
Score = 28.9 bits (65), Expect = 5.7
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 197 DSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQE 256
+E+ LSK N +L L+KLG + + M L R +
Sbjct: 5 SEIESFLSKITSNVKLCVFLLKLGIL----------------LQCMSVLGRYKFSDSLIY 48
Query: 257 DGRPWLDMSHIVHCLNKL-DAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSA 315
+ +LD + L +L + MS + +L + Y L EL SS
Sbjct: 49 NALSYLDPYVLDEILVELLNVIQSSSSLSMSI--ERILNIFYDYKDTKLVNVP-ELHSSG 105
Score = 28.9 bits (65), Expect = 5.7
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 359 DSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQE 418
+E+ LSK N +L L+KLG + + M L R +
Sbjct: 5 SEIESFLSKITSNVKLCVFLLKLGIL----------------LQCMSVLGRYKFSDSLIY 48
Query: 419 DGRPWLDMSHIVHCLNKL-DAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSA 477
+ +LD + L +L + MS + +L + Y L EL SS
Sbjct: 49 NALSYLDPYVLDEILVELLNVIQSSSSLSMSI--ERILNIFYDYKDTKLVNVP-ELHSSG 105
>gnl|CDD|216068 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Length = 195
Score = 28.1 bits (63), Expect = 9.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 187 TQLDAVQLHGDS 198
LD VQLHGD
Sbjct: 70 LGLDVVQLHGDE 81
Score = 28.1 bits (63), Expect = 9.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 349 TQLDAVQLHGDS 360
LD VQLHGD
Sbjct: 70 LGLDVVQLHGDE 81
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 28.7 bits (64), Expect = 9.5
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 197 DSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQE 256
+ SK +EN R ++L + +N + S R + K ++ + +
Sbjct: 140 KIILLRESKNIENLR-----IQLINNKVQ-SINGNSHISFEDLRELRKELKELFSGLLGD 193
Query: 257 DGRP------WLDMSHIVHCLNK 273
RP W D +++ L K
Sbjct: 194 TRRPINDVSLW-DQAYMTASLFK 215
Score = 28.7 bits (64), Expect = 9.5
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 359 DSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQE 418
+ SK +EN R ++L + +N + S R + K ++ + +
Sbjct: 140 KIILLRESKNIENLR-----IQLINNKVQ-SINGNSHISFEDLRELRKELKELFSGLLGD 193
Query: 419 DGRP------WLDMSHIVHCLNK 435
RP W D +++ L K
Sbjct: 194 TRRPINDVSLW-DQAYMTASLFK 215
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.4 bits (63), Expect = 9.9
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 21 APSSGTEVPGAAGPAPGDDLSAPGVLSSP-PGYTMHPGTPPHVRHKPPNAATVDHSSFY 78
PS+ T P PAP ++AP ++P T P TP P NA +S Y
Sbjct: 223 TPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRY 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,430,015
Number of extensions: 2358879
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1947
Number of HSP's successfully gapped: 24
Length of query: 487
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 386
Effective length of database: 6,457,848
Effective search space: 2492729328
Effective search space used: 2492729328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)