RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1282
(487 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 3e-07
Identities = 67/475 (14%), Positives = 134/475 (28%), Gaps = 148/475 (31%)
Query: 113 YHDLQDDLTALGKLILAMTCRSLMAVQRENLQTS-IDLMARSYSADLRNLILY-LLSVHQ 170
Y D+ + C+ + + + L ID + S A L L+ L Q
Sbjct: 18 YKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 171 KRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEM---ENGRLFRLLVKLGTIN-ERP 226
+ V + + Y L + + + + M + RL+ N R
Sbjct: 76 EEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 227 E---------LNLDPTWSETGDRY-----M---------LKLFRDYLLHQVQEDGRPWLD 263
+ L L P + + L + Y + + WL+
Sbjct: 135 QPYLKLRQALLELRP------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 264 MSH------IVHCLNKL-----------------------DAGTQEKICLMSRD-EQSVL 293
+ + ++ L KL + + L S+ E +L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 294 V---VSYAE-LK----QC--L----DQS-FHELSS-----------SASLTPKSTLPLYL 327
V V A+ C L + LS+ S +LTP L L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 328 LSVHQK-----RTVVDLMP----MIGAR---------YYTQLDAVQLH---GDSLENELS 366
+ + R V+ P +I + ++ +L SL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 367 KEMENGRLFRLL------VKLGTINERPELNLDPTW---SETGDRYMLKLFRDYLLHQVQ 417
E ++F L + P + L W ++ ++ Y L V+
Sbjct: 369 AEYR--KMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSL--VE 418
Query: 418 EDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSV---LVVSYAELKQCLDQS 469
+ + + + + ++ + +E ++ +V Y + + D
Sbjct: 419 KQ---PKESTISIPSI-------YLELKVKLENEYALHRSIVDHY-NIPKTFDSD 462
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.005
Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 78/253 (30%)
Query: 155 SADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQL-----DAVQLHGDSL--ENELSKEM 207
+ R L L H V L+P +QL + + ++E +
Sbjct: 3 AYSTRPLTL----SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 208 ENGRLFRLLVK-LGTINERPELNLDPTWSETGD-----RYMLKLF-RDYLLHQVQEDGRP 260
E L+ K LG ++ E S+ G L F YL D
Sbjct: 59 E------LVGKFLGYVSSLVE------PSKVGQFDQVLNLCLTEFENCYLEG---ND--- 100
Query: 261 WLDMSHIVHCL-NKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTP 319
+H L KL + + L+ +Y + + F + S+SA
Sbjct: 101 -------IHALAAKLLQENDTTL-----VKTKELIKNYITARIMAKRPFDKKSNSA---- 144
Query: 320 KSTLPLYLLSVHQKRTVVDLMPMIG-----ARYYTQL------------DAVQLHGDSLE 362
L + L+ + G Y+ +L D ++ ++L
Sbjct: 145 -------LFRAVGEGN-AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 363 NELSKEMENGRLF 375
+ ++ ++F
Sbjct: 197 ELIRTTLDAEKVF 209
Score = 35.8 bits (82), Expect = 0.036
Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 47/172 (27%)
Query: 321 STLPLYLLSVHQKRTVVDLMPMIGARYYTQL-----DAVQLHGDSL--ENELSKEMENGR 373
ST PL LS H V L+P +QL + + ++E + E
Sbjct: 5 STRPL-TLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--- 59
Query: 374 LFRLLVK-LGTINERPELNLDPTWSETGD-----RYMLKLF-RDYLLHQVQEDGRPWLDM 426
L+ K LG ++ E S+ G L F YL D
Sbjct: 60 ---LVGKFLGYVSSLVE------PSKVGQFDQVLNLCLTEFENCYLEG---ND------- 100
Query: 427 SHIVHCL-NKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSA 477
+H L KL + + L+ +Y + + F + S+SA
Sbjct: 101 ---IHALAAKLLQENDTTL-----VKTKELIKNYITARIMAKRPFDKKSNSA 144
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.4 bits (73), Expect = 0.41
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 12 FGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPP 60
G + + S G P ++ +PG L++P S PGY+ P P
Sbjct: 1525 LGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP 1573
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 100 PELFPELPLEVDNYHDLQDDLTALGKLILAMTCR-------SLMAVQRENLQTSIDLMAR 152
PE+ L + + D+ ALG ++ + R + + +
Sbjct: 219 PEIID---LYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHD--- 272
Query: 153 SYSADLRNLILYLLSVH-QKR-TVVDLM 178
+ +LI +L V+ ++R ++ +++
Sbjct: 273 TQYTVFHSLIRAMLQVNPEERLSIAEVV 300
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 30.0 bits (68), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 37 GDDLSAPGV--LSSPPG--YTMHPGT---PPHV 62
++SAPGV LS+ P Y GT PHV
Sbjct: 220 QPEVSAPGVDILSTYPDDSYETLMGTAMATPHV 252
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 306 QSFHELSSSASL-TPKSTLPLYLLSVHQKRTV 336
Q+ +L +S L S P L++ K T+
Sbjct: 20 QALKKLQASLKLYADDSA-P--ALAI--KATM 46
Score = 27.2 bits (59), Expect = 8.6
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 468 QSFHELSSSASL-TPKSTLP 486
Q+ +L +S L S P
Sbjct: 20 QALKKLQASLKLYADDSA-P 38
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 29.6 bits (66), Expect = 2.8
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 8/162 (4%)
Query: 10 ENFGGTTYFYQAPSSGTEVPG------AAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVR 63
E++ + + T V G G + S G M H
Sbjct: 434 EDYKVRAANGKVYNRMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDHKD 493
Query: 64 HKPPNAATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYHDLQDDLTAL 123
KP T + + + K A T NPE + + +
Sbjct: 494 FKPEFVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGGV 553
Query: 124 GKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYL 165
G T ++L+ ++ + + + DL L+
Sbjct: 554 GTYY--NTSKALLDTGFWLMEMLEEDSLKLAARDLHELLRCW 593
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 29.2 bits (66), Expect = 2.8
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 17/59 (28%)
Query: 11 NFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGV--LSSPPG--YTMHPGT---PPHV 62
+ G + ++ ++SAPG S+ Y GT PHV
Sbjct: 208 SRGYISTAGDYVIQEGDI----------EISAPGSSVYSTWYNGGYNTISGTSMATPHV 256
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 28.9 bits (65), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 37 GDDLSAPGV--LSSPPG--YTMHPGT---PPHV 62
++SAPGV LS+ P Y GT PHV
Sbjct: 295 QPEVSAPGVDILSTYPDDSYETLMGTAMATPHV 327
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A
{Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Length = 205
Score = 27.9 bits (63), Expect = 6.0
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 188 QLDAVQLHGD 197
QL+AVQLHG+
Sbjct: 76 QLNAVQLHGE 85
Score = 27.9 bits (63), Expect = 6.0
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 350 QLDAVQLHGD 359
QL+AVQLHG+
Sbjct: 76 QLNAVQLHGE 85
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta
barrel, TRPF, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
c.1.2.4
Length = 203
Score = 27.5 bits (62), Expect = 7.6
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 188 QLDAVQLHGD 197
+L QLHG+
Sbjct: 75 RLQVAQLHGE 84
Score = 27.5 bits (62), Expect = 7.6
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 350 QLDAVQLHGD 359
+L QLHG+
Sbjct: 75 RLQVAQLHGE 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,244,773
Number of extensions: 430235
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 19
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)