RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1282
         (487 letters)



>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
           kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 28.5 bits (63), Expect = 1.6
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 68  NAATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYHDLQDDLTALGKLI 127
           N   +    F     ++  +      T V + PE      +    YH     + +LG L+
Sbjct: 146 NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEW-----IRYHRYHGRSAAVWSLGILL 200

Query: 128 LAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKR 172
             M C  +     E +        +  S++ ++LI + L++    
Sbjct: 201 YDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSD 245


>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
           reductase {Lactobacillus leichmannii [TaxId: 28039]}
          Length = 721

 Score = 28.0 bits (61), Expect = 3.6
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 14/62 (22%)

Query: 226 PELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLM 285
           PE      W ET  R +              +G   LD         +L     E+   +
Sbjct: 37  PEKGRSENWDETVKRVV--------------EGNINLDPRLQDSPSLELKQSLTEEAERL 82

Query: 286 SR 287
            +
Sbjct: 83  YK 84



 Score = 28.0 bits (61), Expect = 3.6
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 14/62 (22%)

Query: 388 PELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLM 447
           PE      W ET  R +              +G   LD         +L     E+   +
Sbjct: 37  PEKGRSENWDETVKRVV--------------EGNINLDPRLQDSPSLELKQSLTEEAERL 82

Query: 448 SR 449
            +
Sbjct: 83  YK 84


>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score = 26.2 bits (58), Expect = 7.2
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 112 NYHDLQDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQK 171
               +++ L+ALG +I    C   +A+   ++             +   LI  +L V   
Sbjct: 93  KIQRVEERLSALGNVIC---CNDYVALVHPDI-----------DRETEELISDVLGVEVF 138

Query: 172 RTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTIN 223
           R  +    ++G+          +H  +   +  +E+ +  L ++ +  GT+N
Sbjct: 139 RQTISGNILVGSYCSLSNQGGLVHPQTSVQDQ-EELSS--LLQVPLVAGTVN 187


>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 144

 Score = 25.7 bits (56), Expect = 9.1
 Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 33 GPAPGDDLSAPGVLSSPP-GYTMHPGTPPHVRHKPPNAA 70
          GP      + P V + P   Y      P    +  P   
Sbjct: 1  GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 39


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
          [TaxId: 562]}
          Length = 571

 Score = 26.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 21 APSSGTEVPGAAGPAPGDDLSAPGVLSSPPG 51
          AP  G+  P A    PG   +APG L +P  
Sbjct: 4  APEDGSHRPAAEPTPPGAQPTAPGSLKAPDT 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,742,861
Number of extensions: 78516
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 7
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)